####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 82 ( 328), selected 82 , name T0576AL285_1-D1 # Molecule2: number of CA atoms 133 ( 1064), selected 82 , name T0576-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0576AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 82 38 - 119 2.58 2.58 LCS_AVERAGE: 61.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 50 70 - 119 1.81 2.82 LCS_AVERAGE: 30.64 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 70 - 95 0.85 2.85 LCS_AVERAGE: 13.04 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 82 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 38 M 38 6 23 82 4 22 42 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT F 39 F 39 6 23 82 4 12 22 27 37 47 65 72 76 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 40 R 40 6 25 82 4 5 13 24 30 38 54 71 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT T 41 T 41 6 25 82 4 8 20 47 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 42 G 42 6 25 82 3 22 37 56 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT M 43 M 43 18 25 82 7 40 53 57 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT C 44 C 44 18 25 82 20 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 45 L 45 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT F 46 F 46 18 25 82 26 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT S 47 S 47 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 48 V 48 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 49 R 49 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT S 50 S 50 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT P 51 P 51 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 52 G 52 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 53 G 53 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 54 V 54 18 25 82 22 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT A 55 A 55 18 25 82 22 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 56 E 56 18 25 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 57 L 57 18 25 82 9 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT Y 58 Y 58 18 25 82 19 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 59 G 59 18 25 82 4 12 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 60 G 60 18 25 82 4 11 47 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 61 E 61 5 25 82 3 4 5 8 14 25 41 60 72 77 81 82 82 82 82 82 82 82 82 82 LCS_GDT A 62 A 62 3 25 82 3 3 16 20 32 50 67 72 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 63 R 63 6 25 82 3 6 16 20 27 41 63 71 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT K 64 K 64 6 31 82 3 7 16 20 27 41 61 71 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 65 V 65 6 33 82 4 11 25 53 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 66 E 66 6 33 82 4 11 25 52 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT I 67 I 67 6 33 82 4 5 17 34 53 64 70 75 75 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT T 68 T 68 6 33 82 4 5 19 49 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 69 G 69 3 33 82 3 3 5 11 23 36 48 68 72 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT T 70 T 70 26 50 82 4 32 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT S 71 S 71 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 72 L 72 26 50 82 20 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT T 73 T 73 26 50 82 19 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT I 74 I 74 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 75 E 75 26 50 82 25 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 76 R 76 26 50 82 25 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 77 E 77 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT D 78 D 78 26 50 82 5 25 41 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT W 79 W 79 26 50 82 22 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT H 80 H 80 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 81 L 81 26 50 82 25 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT H 82 H 82 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT C 83 C 83 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT K 84 K 84 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 85 L 85 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 86 E 86 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT T 87 T 87 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 88 V 88 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT E 89 E 89 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT T 90 T 90 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 91 V 91 26 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 92 V 92 26 50 82 20 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT F 93 F 93 26 50 82 26 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT D 94 D 94 26 50 82 26 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 95 L 95 26 50 82 11 36 53 57 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT S 96 S 96 18 50 82 3 13 24 44 60 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT P 97 P 97 13 50 82 6 13 25 46 60 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT K 98 K 98 13 50 82 3 13 24 39 52 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT D 99 D 99 13 50 82 6 13 22 30 44 57 70 75 75 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT N 100 N 100 13 50 82 5 13 24 37 52 65 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 101 G 101 13 50 82 3 5 20 31 51 63 70 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT G 102 G 102 3 50 82 3 4 24 32 56 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT I 103 I 103 3 50 82 3 9 25 32 38 65 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 104 R 104 16 50 82 4 17 51 57 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT M 105 M 105 16 50 82 21 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT A 106 A 106 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 107 V 107 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 108 V 108 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT F 109 F 109 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 110 R 110 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT D 111 D 111 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT K 112 K 112 16 50 82 20 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT H 113 H 113 16 50 82 25 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT Q 114 Q 114 16 50 82 15 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT A 115 A 115 16 50 82 8 39 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT P 116 P 116 16 50 82 11 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT V 117 V 117 16 50 82 20 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT L 118 L 118 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_GDT R 119 R 119 16 50 82 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 LCS_AVERAGE LCS_A: 35.11 ( 13.04 30.64 61.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 27 51 54 58 63 66 71 75 77 81 81 82 82 82 82 82 82 82 82 82 GDT PERCENT_AT 20.30 38.35 40.60 43.61 47.37 49.62 53.38 56.39 57.89 60.90 60.90 61.65 61.65 61.65 61.65 61.65 61.65 61.65 61.65 61.65 GDT RMS_LOCAL 0.33 0.57 0.66 0.88 1.19 1.33 1.71 2.01 2.25 2.48 2.48 2.58 2.58 2.58 2.58 2.58 2.58 2.58 2.58 2.58 GDT RMS_ALL_AT 2.96 2.91 2.92 2.92 2.81 2.80 2.67 2.65 2.59 2.58 2.58 2.58 2.58 2.58 2.58 2.58 2.58 2.58 2.58 2.58 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 38 M 38 2.820 4 0.139 0.139 3.271 53.571 26.786 LGA F 39 F 39 5.004 7 0.074 0.074 5.454 28.929 10.519 LGA R 40 R 40 6.286 7 0.054 0.054 6.797 19.524 7.100 LGA T 41 T 41 4.186 3 0.186 0.186 4.799 35.714 20.408 LGA G 42 G 42 3.776 0 0.668 0.668 4.041 45.238 45.238 LGA M 43 M 43 1.391 4 0.500 0.500 1.391 83.690 41.845 LGA C 44 C 44 0.438 2 0.082 0.082 0.767 97.619 65.079 LGA L 45 L 45 0.481 4 0.023 0.023 0.481 100.000 50.000 LGA F 46 F 46 0.297 7 0.075 0.075 0.682 95.238 34.632 LGA S 47 S 47 1.186 2 0.108 0.108 1.186 83.690 55.794 LGA V 48 V 48 1.031 3 0.014 0.014 1.168 81.429 46.531 LGA R 49 R 49 0.983 7 0.082 0.082 1.116 88.214 32.078 LGA S 50 S 50 1.066 2 0.089 0.089 1.715 79.286 52.857 LGA P 51 P 51 1.088 3 0.125 0.125 1.709 81.548 46.599 LGA G 52 G 52 1.438 0 0.090 0.090 2.121 75.119 75.119 LGA G 53 G 53 1.406 0 0.042 0.042 1.406 81.429 81.429 LGA V 54 V 54 1.695 3 0.021 0.021 1.735 72.857 41.633 LGA A 55 A 55 1.728 1 0.034 0.034 1.742 75.000 60.000 LGA E 56 E 56 1.548 5 0.010 0.010 2.128 70.833 31.481 LGA L 57 L 57 1.718 4 0.033 0.033 1.718 81.548 40.774 LGA Y 58 Y 58 1.704 8 0.093 0.093 1.864 72.857 24.286 LGA G 59 G 59 2.072 0 0.045 0.045 2.361 66.786 66.786 LGA G 60 G 60 2.595 0 0.628 0.628 4.483 49.048 49.048 LGA E 61 E 61 7.266 5 0.116 0.116 8.570 11.905 5.291 LGA A 62 A 62 5.647 1 0.043 0.043 5.647 23.810 19.048 LGA R 63 R 63 6.395 7 0.327 0.327 6.531 17.262 6.277 LGA K 64 K 64 6.334 5 0.094 0.094 6.443 22.976 10.212 LGA V 65 V 65 2.512 3 0.061 0.061 4.308 50.357 28.776 LGA E 66 E 66 2.714 5 0.083 0.083 3.760 55.595 24.709 LGA I 67 I 67 4.118 4 0.089 0.089 4.869 40.476 20.238 LGA T 68 T 68 3.221 3 0.046 0.046 5.339 37.738 21.565 LGA G 69 G 69 6.385 0 0.222 0.222 7.890 15.952 15.952 LGA T 70 T 70 2.679 3 0.527 0.527 2.882 67.143 38.367 LGA S 71 S 71 1.117 2 0.037 0.037 1.594 81.548 54.365 LGA L 72 L 72 0.646 4 0.023 0.023 0.806 90.476 45.238 LGA T 73 T 73 0.984 3 0.100 0.100 1.239 88.214 50.408 LGA I 74 I 74 0.829 4 0.106 0.106 0.829 90.476 45.238 LGA E 75 E 75 0.817 5 0.053 0.053 0.845 90.476 40.212 LGA R 76 R 76 0.846 7 0.021 0.021 1.571 83.810 30.476 LGA E 77 E 77 2.029 5 0.030 0.030 3.069 61.190 27.196 LGA D 78 D 78 3.487 4 0.228 0.228 3.487 55.357 27.679 LGA W 79 W 79 1.714 10 0.058 0.058 2.201 75.119 21.463 LGA H 80 H 80 1.046 6 0.037 0.037 1.295 83.690 33.476 LGA L 81 L 81 0.646 4 0.014 0.014 0.646 90.476 45.238 LGA H 82 H 82 0.659 6 0.008 0.008 0.732 90.476 36.190 LGA C 83 C 83 0.403 2 0.020 0.020 0.489 100.000 66.667 LGA K 84 K 84 0.504 5 0.113 0.113 0.744 92.857 41.270 LGA L 85 L 85 0.899 4 0.024 0.024 0.969 90.476 45.238 LGA E 86 E 86 0.987 5 0.063 0.063 1.258 85.952 38.201 LGA T 87 T 87 0.846 3 0.030 0.030 0.846 90.476 51.701 LGA V 88 V 88 0.621 3 0.036 0.036 0.947 90.476 51.701 LGA E 89 E 89 1.114 5 0.088 0.088 1.168 83.690 37.196 LGA T 90 T 90 1.324 3 0.016 0.016 1.324 81.429 46.531 LGA V 91 V 91 1.058 3 0.096 0.096 1.482 81.429 46.531 LGA V 92 V 92 1.645 3 0.041 0.041 1.645 81.548 46.599 LGA F 93 F 93 0.785 7 0.059 0.059 1.150 88.214 32.078 LGA D 94 D 94 0.638 4 0.049 0.049 0.638 92.857 46.429 LGA L 95 L 95 0.793 4 0.097 0.097 2.532 80.119 40.060 LGA S 96 S 96 3.024 2 0.123 0.123 3.024 67.500 45.000 LGA P 97 P 97 3.102 3 0.042 0.042 4.014 45.119 25.782 LGA K 98 K 98 3.761 5 0.065 0.065 4.081 43.452 19.312 LGA D 99 D 99 5.098 4 0.073 0.073 5.098 30.119 15.060 LGA N 100 N 100 4.459 4 0.529 0.529 5.329 31.548 15.774 LGA G 101 G 101 4.641 0 0.640 0.640 4.643 46.190 46.190 LGA G 102 G 102 3.210 0 0.591 0.591 3.210 53.571 53.571 LGA I 103 I 103 3.485 4 0.125 0.125 3.485 51.786 25.893 LGA R 104 R 104 1.745 7 0.161 0.161 1.745 81.548 29.654 LGA M 105 M 105 0.914 4 0.082 0.082 1.099 85.952 42.976 LGA A 106 A 106 0.831 1 0.028 0.028 1.127 88.214 70.571 LGA V 107 V 107 0.808 3 0.060 0.060 0.808 90.476 51.701 LGA V 108 V 108 0.758 3 0.098 0.098 1.252 88.214 50.408 LGA F 109 F 109 0.612 7 0.047 0.047 0.733 90.476 32.900 LGA R 110 R 110 0.886 7 0.004 0.004 1.050 88.214 32.078 LGA D 111 D 111 0.604 4 0.021 0.021 1.074 88.214 44.107 LGA K 112 K 112 1.204 5 0.043 0.043 1.467 83.690 37.196 LGA H 113 H 113 0.712 6 0.029 0.029 1.141 88.214 35.286 LGA Q 114 Q 114 1.668 5 0.122 0.122 2.186 72.976 32.434 LGA A 115 A 115 1.787 1 0.083 0.083 1.787 79.405 63.524 LGA P 116 P 116 1.308 3 0.044 0.044 1.542 79.286 45.306 LGA V 117 V 117 0.738 3 0.050 0.050 0.820 90.476 51.701 LGA L 118 L 118 0.626 4 0.064 0.064 0.719 90.476 45.238 LGA R 119 R 119 0.793 7 0.039 0.039 0.810 90.476 32.900 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 82 328 328 100.00 643 328 51.01 133 SUMMARY(RMSD_GDC): 2.577 2.558 2.558 43.826 23.973 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 82 133 4.0 75 2.01 50.000 46.554 3.548 LGA_LOCAL RMSD: 2.014 Number of atoms: 75 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.649 Number of assigned atoms: 82 Std_ASGN_ATOMS RMSD: 2.577 Standard rmsd on all 82 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.207245 * X + -0.057516 * Y + 0.976597 * Z + 5.545448 Y_new = 0.565688 * X + 0.807408 * Y + 0.167598 * Z + 27.274723 Z_new = -0.798152 * X + 0.587183 * Y + -0.134795 * Z + 45.625736 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.921971 0.924221 1.796450 [DEG: 110.1208 52.9540 102.9290 ] ZXZ: 1.740755 1.706003 -0.936524 [DEG: 99.7379 97.7468 -53.6589 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0576AL285_1-D1 REMARK 2: T0576-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0576AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 82 133 4.0 75 2.01 46.554 2.58 REMARK ---------------------------------------------------------- MOLECULE T0576AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3fm2A ATOM 1 N MET 38 18.745 51.023 19.439 1.00 0.00 N ATOM 2 CA MET 38 18.940 50.822 20.875 1.00 0.00 C ATOM 3 C MET 38 20.326 50.311 21.226 1.00 0.00 C ATOM 4 O MET 38 20.724 50.403 22.386 1.00 0.00 O ATOM 5 N PHE 39 21.058 49.781 20.241 1.00 0.00 N ATOM 6 CA PHE 39 22.429 49.334 20.482 1.00 0.00 C ATOM 7 C PHE 39 23.282 50.509 20.970 1.00 0.00 C ATOM 8 O PHE 39 24.265 50.305 21.689 1.00 0.00 O ATOM 9 N ARG 40 22.907 51.729 20.584 1.00 0.00 N ATOM 10 CA ARG 40 23.634 52.935 21.011 1.00 0.00 C ATOM 11 C ARG 40 23.447 53.288 22.495 1.00 0.00 C ATOM 12 O ARG 40 24.147 54.158 23.009 1.00 0.00 O ATOM 13 N THR 41 22.497 52.636 23.169 1.00 0.00 N ATOM 14 CA THR 41 22.184 52.944 24.574 1.00 0.00 C ATOM 15 C THR 41 23.025 52.217 25.628 1.00 0.00 C ATOM 16 O THR 41 22.792 52.390 26.831 1.00 0.00 O ATOM 17 N GLY 42 23.989 51.406 25.196 1.00 0.00 N ATOM 18 CA GLY 42 24.841 50.678 26.119 1.00 0.00 C ATOM 19 C GLY 42 24.078 49.635 26.905 1.00 0.00 C ATOM 20 O GLY 42 23.085 49.093 26.435 1.00 0.00 O ATOM 21 N MET 43 24.529 49.369 28.127 1.00 0.00 N ATOM 22 CA MET 43 23.926 48.330 28.945 1.00 0.00 C ATOM 23 C MET 43 22.534 48.708 29.424 1.00 0.00 C ATOM 24 O MET 43 22.339 49.732 30.069 1.00 0.00 O ATOM 25 N CYS 44 21.564 47.860 29.108 1.00 0.00 N ATOM 26 CA CYS 44 20.198 48.099 29.519 1.00 0.00 C ATOM 27 C CYS 44 19.757 47.055 30.524 1.00 0.00 C ATOM 28 O CYS 44 20.450 46.047 30.782 1.00 0.00 O ATOM 29 N LEU 45 18.593 47.328 31.097 1.00 0.00 N ATOM 30 CA LEU 45 17.935 46.421 31.999 1.00 0.00 C ATOM 31 C LEU 45 16.604 46.127 31.313 1.00 0.00 C ATOM 32 O LEU 45 15.771 47.022 31.153 1.00 0.00 O ATOM 33 N PHE 46 16.454 44.887 30.856 1.00 0.00 N ATOM 34 CA PHE 46 15.267 44.426 30.138 1.00 0.00 C ATOM 35 C PHE 46 14.276 43.912 31.150 1.00 0.00 C ATOM 36 O PHE 46 14.577 42.986 31.893 1.00 0.00 O ATOM 37 N SER 47 13.100 44.527 31.181 1.00 0.00 N ATOM 38 CA SER 47 12.064 44.161 32.126 1.00 0.00 C ATOM 39 C SER 47 10.790 43.656 31.450 1.00 0.00 C ATOM 40 O SER 47 10.140 44.361 30.666 1.00 0.00 O ATOM 41 N VAL 48 10.429 42.424 31.772 1.00 0.00 N ATOM 42 CA VAL 48 9.212 41.816 31.261 1.00 0.00 C ATOM 43 C VAL 48 8.374 41.413 32.464 1.00 0.00 C ATOM 44 O VAL 48 8.860 40.764 33.400 1.00 0.00 O ATOM 45 N ARG 49 7.114 41.818 32.424 1.00 0.00 N ATOM 46 CA ARG 49 6.196 41.582 33.497 1.00 0.00 C ATOM 47 C ARG 49 5.000 40.787 33.011 1.00 0.00 C ATOM 48 O ARG 49 4.418 41.090 31.968 1.00 0.00 O ATOM 49 N SER 50 4.648 39.760 33.767 1.00 0.00 N ATOM 50 CA SER 50 3.447 38.980 33.499 1.00 0.00 C ATOM 51 C SER 50 2.378 39.520 34.444 1.00 0.00 C ATOM 52 O SER 50 2.498 40.629 34.970 1.00 0.00 O ATOM 53 N PRO 51 1.331 38.745 34.676 1.00 0.00 N ATOM 54 CA PRO 51 0.290 39.169 35.596 1.00 0.00 C ATOM 55 C PRO 51 0.783 39.203 37.046 1.00 0.00 C ATOM 56 O PRO 51 0.289 39.987 37.850 1.00 0.00 O ATOM 57 N GLY 52 1.759 38.355 37.374 1.00 0.00 N ATOM 58 CA GLY 52 2.244 38.235 38.748 1.00 0.00 C ATOM 59 C GLY 52 3.758 38.182 38.950 1.00 0.00 C ATOM 60 O GLY 52 4.201 38.083 40.086 1.00 0.00 O ATOM 61 N GLY 53 4.554 38.220 37.882 1.00 0.00 N ATOM 62 CA GLY 53 6.000 38.128 38.021 1.00 0.00 C ATOM 63 C GLY 53 6.715 39.181 37.198 1.00 0.00 C ATOM 64 O GLY 53 6.213 39.649 36.170 1.00 0.00 O ATOM 65 N VAL 54 7.916 39.524 37.650 1.00 0.00 N ATOM 66 CA VAL 54 8.748 40.480 36.961 1.00 0.00 C ATOM 67 C VAL 54 10.128 39.859 36.841 1.00 0.00 C ATOM 68 O VAL 54 10.663 39.323 37.816 1.00 0.00 O ATOM 69 N ALA 55 10.684 39.903 35.640 1.00 0.00 N ATOM 70 CA ALA 55 12.034 39.407 35.403 1.00 0.00 C ATOM 71 C ALA 55 12.794 40.578 34.810 1.00 0.00 C ATOM 72 O ALA 55 12.281 41.266 33.918 1.00 0.00 O ATOM 73 N GLU 56 13.989 40.833 35.327 1.00 0.00 N ATOM 74 CA GLU 56 14.817 41.946 34.865 1.00 0.00 C ATOM 75 C GLU 56 16.167 41.367 34.527 1.00 0.00 C ATOM 76 O GLU 56 16.774 40.709 35.365 1.00 0.00 O ATOM 77 N LEU 57 16.617 41.551 33.294 1.00 0.00 N ATOM 78 CA LEU 57 17.902 41.006 32.880 1.00 0.00 C ATOM 79 C LEU 57 18.780 42.139 32.380 1.00 0.00 C ATOM 80 O LEU 57 18.307 43.052 31.731 1.00 0.00 O ATOM 81 N TYR 58 20.066 42.071 32.703 1.00 0.00 N ATOM 82 CA TYR 58 21.025 43.099 32.324 1.00 0.00 C ATOM 83 C TYR 58 21.677 42.704 31.004 1.00 0.00 C ATOM 84 O TYR 58 22.112 41.568 30.849 1.00 0.00 O ATOM 85 N GLY 59 21.751 43.633 30.061 1.00 0.00 N ATOM 86 CA GLY 59 22.445 43.385 28.806 1.00 0.00 C ATOM 87 C GLY 59 22.220 44.464 27.767 1.00 0.00 C ATOM 88 O GLY 59 21.259 45.225 27.845 1.00 0.00 O ATOM 89 N GLY 60 23.117 44.533 26.792 1.00 0.00 N ATOM 90 CA GLY 60 22.970 45.475 25.687 1.00 0.00 C ATOM 91 C GLY 60 21.982 44.880 24.711 1.00 0.00 C ATOM 92 O GLY 60 21.857 43.665 24.634 1.00 0.00 O ATOM 93 N GLU 61 21.282 45.740 23.979 1.00 0.00 N ATOM 94 CA GLU 61 20.388 45.307 22.924 1.00 0.00 C ATOM 95 C GLU 61 21.302 45.289 21.708 1.00 0.00 C ATOM 96 O GLU 61 21.537 46.316 21.073 1.00 0.00 O ATOM 97 N ALA 62 21.861 44.114 21.436 1.00 0.00 N ATOM 98 CA ALA 62 22.794 43.912 20.337 1.00 0.00 C ATOM 99 C ALA 62 22.570 42.515 19.785 1.00 0.00 C ATOM 100 O ALA 62 21.924 41.688 20.426 1.00 0.00 O ATOM 101 N ARG 63 23.132 42.258 18.607 1.00 0.00 N ATOM 102 CA ARG 63 23.019 40.956 17.948 1.00 0.00 C ATOM 103 C ARG 63 21.572 40.486 17.843 1.00 0.00 C ATOM 104 O ARG 63 21.259 39.315 18.037 1.00 0.00 O ATOM 105 N LYS 64 20.687 41.421 17.512 1.00 0.00 N ATOM 106 CA LYS 64 19.274 41.093 17.334 1.00 0.00 C ATOM 107 C LYS 64 19.104 40.241 16.095 1.00 0.00 C ATOM 108 O LYS 64 19.801 40.441 15.111 1.00 0.00 O ATOM 109 N VAL 65 18.185 39.287 16.153 1.00 0.00 N ATOM 110 CA VAL 65 17.826 38.511 14.981 1.00 0.00 C ATOM 111 C VAL 65 16.320 38.484 14.934 1.00 0.00 C ATOM 112 O VAL 65 15.651 38.605 15.971 1.00 0.00 O ATOM 113 N GLU 66 15.796 38.382 13.722 1.00 0.00 N ATOM 114 CA GLU 66 14.370 38.447 13.507 1.00 0.00 C ATOM 115 C GLU 66 13.871 37.165 12.901 1.00 0.00 C ATOM 116 O GLU 66 14.580 36.489 12.166 1.00 0.00 O ATOM 117 N ILE 67 12.642 36.815 13.214 1.00 0.00 N ATOM 118 CA ILE 67 12.060 35.624 12.625 1.00 0.00 C ATOM 119 C ILE 67 10.563 35.778 12.605 1.00 0.00 C ATOM 120 O ILE 67 9.974 36.392 13.507 1.00 0.00 O ATOM 121 N THR 68 9.948 35.272 11.546 1.00 0.00 N ATOM 122 CA THR 68 8.511 35.287 11.478 1.00 0.00 C ATOM 123 C THR 68 7.995 33.955 11.960 1.00 0.00 C ATOM 124 O THR 68 8.233 32.928 11.327 1.00 0.00 O ATOM 125 N GLY 69 3.539 35.844 14.622 1.00 0.00 N ATOM 126 CA GLY 69 3.998 37.140 14.132 1.00 0.00 C ATOM 127 C GLY 69 5.495 37.276 13.971 1.00 0.00 C ATOM 128 O GLY 69 6.246 36.323 14.171 1.00 0.00 O ATOM 129 N THR 70 5.906 38.488 13.602 1.00 0.00 N ATOM 130 CA THR 70 7.304 38.817 13.383 1.00 0.00 C ATOM 131 C THR 70 7.913 39.181 14.729 1.00 0.00 C ATOM 132 O THR 70 7.426 40.074 15.424 1.00 0.00 O ATOM 133 N SER 71 8.983 38.478 15.078 1.00 0.00 N ATOM 134 CA SER 71 9.667 38.643 16.349 1.00 0.00 C ATOM 135 C SER 71 11.059 39.201 16.230 1.00 0.00 C ATOM 136 O SER 71 11.771 38.884 15.285 1.00 0.00 O ATOM 137 N LEU 72 11.422 40.026 17.216 1.00 0.00 N ATOM 138 CA LEU 72 12.782 40.459 17.426 1.00 0.00 C ATOM 139 C LEU 72 13.264 39.533 18.540 1.00 0.00 C ATOM 140 O LEU 72 12.516 39.206 19.463 1.00 0.00 O ATOM 141 N THR 73 14.514 39.114 18.455 1.00 0.00 N ATOM 142 CA THR 73 15.064 38.175 19.421 1.00 0.00 C ATOM 143 C THR 73 16.528 38.450 19.749 1.00 0.00 C ATOM 144 O THR 73 17.253 39.078 18.980 1.00 0.00 O ATOM 145 N ILE 74 16.949 37.962 20.916 1.00 0.00 N ATOM 146 CA ILE 74 18.354 37.955 21.329 1.00 0.00 C ATOM 147 C ILE 74 18.630 36.676 22.094 1.00 0.00 C ATOM 148 O ILE 74 17.761 36.166 22.802 1.00 0.00 O ATOM 149 N GLU 75 19.855 36.183 21.947 1.00 0.00 N ATOM 150 CA GLU 75 20.337 35.033 22.679 1.00 0.00 C ATOM 151 C GLU 75 21.689 35.407 23.270 1.00 0.00 C ATOM 152 O GLU 75 22.598 35.800 22.541 1.00 0.00 O ATOM 153 N ARG 76 21.808 35.324 24.594 1.00 0.00 N ATOM 154 CA ARG 76 23.085 35.544 25.277 1.00 0.00 C ATOM 155 C ARG 76 23.264 34.330 26.170 1.00 0.00 C ATOM 156 O ARG 76 22.359 33.520 26.288 1.00 0.00 O ATOM 157 N GLU 77 24.419 34.203 26.806 1.00 0.00 N ATOM 158 CA GLU 77 24.657 33.067 27.695 1.00 0.00 C ATOM 159 C GLU 77 23.714 33.125 28.896 1.00 0.00 C ATOM 160 O GLU 77 23.168 32.098 29.323 1.00 0.00 O ATOM 161 N ASP 78 23.496 34.337 29.404 1.00 0.00 N ATOM 162 CA ASP 78 22.655 34.561 30.574 1.00 0.00 C ATOM 163 C ASP 78 21.154 34.585 30.343 1.00 0.00 C ATOM 164 O ASP 78 20.394 34.294 31.270 1.00 0.00 O ATOM 165 N TRP 79 20.712 34.956 29.135 1.00 0.00 N ATOM 166 CA TRP 79 19.278 35.011 28.850 1.00 0.00 C ATOM 167 C TRP 79 18.924 34.999 27.369 1.00 0.00 C ATOM 168 O TRP 79 19.768 35.272 26.511 1.00 0.00 O ATOM 169 N HIS 80 17.669 34.655 27.089 1.00 0.00 N ATOM 170 CA HIS 80 17.124 34.690 25.735 1.00 0.00 C ATOM 171 C HIS 80 15.939 35.663 25.801 1.00 0.00 C ATOM 172 O HIS 80 15.258 35.757 26.821 1.00 0.00 O ATOM 173 N LEU 81 15.722 36.408 24.727 1.00 0.00 N ATOM 174 CA LEU 81 14.691 37.431 24.681 1.00 0.00 C ATOM 175 C LEU 81 13.918 37.355 23.380 1.00 0.00 C ATOM 176 O LEU 81 14.516 37.165 22.323 1.00 0.00 O ATOM 177 N HIS 82 12.596 37.489 23.470 1.00 0.00 N ATOM 178 CA HIS 82 11.720 37.456 22.298 1.00 0.00 C ATOM 179 C HIS 82 10.669 38.540 22.430 1.00 0.00 C ATOM 180 O HIS 82 10.054 38.688 23.490 1.00 0.00 O ATOM 181 N CYS 83 10.474 39.315 21.361 1.00 0.00 N ATOM 182 CA CYS 83 9.462 40.372 21.349 1.00 0.00 C ATOM 183 C CYS 83 8.589 40.231 20.111 1.00 0.00 C ATOM 184 O CYS 83 9.107 40.222 19.004 1.00 0.00 O ATOM 185 N LYS 84 7.271 40.138 20.299 1.00 0.00 N ATOM 186 CA LYS 84 6.364 40.074 19.177 1.00 0.00 C ATOM 187 C LYS 84 6.161 41.528 18.772 1.00 0.00 C ATOM 188 O LYS 84 5.421 42.272 19.411 1.00 0.00 O ATOM 189 N LEU 85 6.860 41.929 17.718 1.00 0.00 N ATOM 190 CA LEU 85 6.820 43.307 17.256 1.00 0.00 C ATOM 191 C LEU 85 5.437 43.774 16.824 1.00 0.00 C ATOM 192 O LEU 85 5.094 44.945 16.997 1.00 0.00 O ATOM 193 N GLU 86 4.627 42.860 16.308 1.00 0.00 N ATOM 194 CA GLU 86 3.308 43.229 15.808 1.00 0.00 C ATOM 195 C GLU 86 2.297 43.576 16.900 1.00 0.00 C ATOM 196 O GLU 86 1.218 44.082 16.599 1.00 0.00 O ATOM 197 N THR 87 2.645 43.330 18.162 1.00 0.00 N ATOM 198 CA THR 87 1.734 43.600 19.275 1.00 0.00 C ATOM 199 C THR 87 1.995 44.932 19.985 1.00 0.00 C ATOM 200 O THR 87 1.254 45.300 20.898 1.00 0.00 O ATOM 201 N VAL 88 3.043 45.638 19.579 1.00 0.00 N ATOM 202 CA VAL 88 3.397 46.916 20.177 1.00 0.00 C ATOM 203 C VAL 88 2.705 48.041 19.424 1.00 0.00 C ATOM 204 O VAL 88 2.935 48.228 18.236 1.00 0.00 O ATOM 205 N GLU 89 1.857 48.785 20.125 1.00 0.00 N ATOM 206 CA GLU 89 1.082 49.867 19.523 1.00 0.00 C ATOM 207 C GLU 89 1.699 51.249 19.763 1.00 0.00 C ATOM 208 O GLU 89 1.461 52.186 19.000 1.00 0.00 O ATOM 209 N THR 90 2.505 51.368 20.811 1.00 0.00 N ATOM 210 CA THR 90 3.120 52.634 21.150 1.00 0.00 C ATOM 211 C THR 90 4.396 52.437 21.956 1.00 0.00 C ATOM 212 O THR 90 4.519 51.460 22.684 1.00 0.00 O ATOM 213 N VAL 91 5.337 53.365 21.802 1.00 0.00 N ATOM 214 CA VAL 91 6.607 53.341 22.523 1.00 0.00 C ATOM 215 C VAL 91 6.777 54.707 23.159 1.00 0.00 C ATOM 216 O VAL 91 6.579 55.721 22.496 1.00 0.00 O ATOM 217 N VAL 92 7.118 54.714 24.447 1.00 0.00 N ATOM 218 CA VAL 92 7.283 55.948 25.213 1.00 0.00 C ATOM 219 C VAL 92 8.609 56.047 25.949 1.00 0.00 C ATOM 220 O VAL 92 9.055 55.085 26.592 1.00 0.00 O ATOM 221 N PHE 93 9.240 57.212 25.855 1.00 0.00 N ATOM 222 CA PHE 93 10.440 57.502 26.641 1.00 0.00 C ATOM 223 C PHE 93 9.993 58.133 27.957 1.00 0.00 C ATOM 224 O PHE 93 9.165 59.053 27.950 1.00 0.00 O ATOM 225 N ASP 94 10.535 57.655 29.076 1.00 0.00 N ATOM 226 CA ASP 94 10.201 58.210 30.396 1.00 0.00 C ATOM 227 C ASP 94 11.381 58.297 31.347 1.00 0.00 C ATOM 228 O ASP 94 12.103 57.324 31.532 1.00 0.00 O ATOM 229 N LEU 95 11.562 59.468 31.956 1.00 0.00 N ATOM 230 CA LEU 95 12.559 59.633 33.001 1.00 0.00 C ATOM 231 C LEU 95 11.754 59.410 34.279 1.00 0.00 C ATOM 232 O LEU 95 10.654 59.957 34.430 1.00 0.00 O ATOM 233 N SER 96 12.276 58.597 35.184 1.00 0.00 N ATOM 234 CA SER 96 11.600 58.315 36.441 1.00 0.00 C ATOM 235 C SER 96 12.552 58.495 37.595 1.00 0.00 C ATOM 236 O SER 96 13.644 59.026 37.432 1.00 0.00 O ATOM 237 N PRO 97 12.116 58.075 38.769 1.00 0.00 N ATOM 238 CA PRO 97 12.945 58.130 39.959 1.00 0.00 C ATOM 239 C PRO 97 12.881 56.755 40.609 1.00 0.00 C ATOM 240 O PRO 97 11.799 56.189 40.764 1.00 0.00 O ATOM 241 N LYS 98 14.041 56.211 40.959 1.00 0.00 N ATOM 242 CA LYS 98 14.115 54.895 41.574 1.00 0.00 C ATOM 243 C LYS 98 13.574 54.942 42.993 1.00 0.00 C ATOM 244 O LYS 98 13.784 55.918 43.721 1.00 0.00 O ATOM 245 N ASP 99 12.870 53.879 43.370 1.00 0.00 N ATOM 246 CA ASP 99 12.332 53.733 44.724 1.00 0.00 C ATOM 247 C ASP 99 13.467 53.739 45.752 1.00 0.00 C ATOM 248 O ASP 99 13.503 54.585 46.647 1.00 0.00 O ATOM 249 N ASN 100 14.399 52.806 45.594 1.00 0.00 N ATOM 250 CA ASN 100 15.547 52.680 46.484 1.00 0.00 C ATOM 251 C ASN 100 16.726 53.411 45.846 1.00 0.00 C ATOM 252 O ASN 100 17.314 52.925 44.876 1.00 0.00 O ATOM 253 N GLY 101 17.056 54.582 46.386 1.00 0.00 N ATOM 254 CA GLY 101 18.164 55.393 45.876 1.00 0.00 C ATOM 255 C GLY 101 17.730 56.814 45.592 1.00 0.00 C ATOM 256 O GLY 101 18.504 57.754 45.775 1.00 0.00 O ATOM 257 N GLY 102 16.487 56.971 45.145 1.00 0.00 N ATOM 258 CA GLY 102 15.951 58.278 44.820 1.00 0.00 C ATOM 259 C GLY 102 16.743 58.904 43.677 1.00 0.00 C ATOM 260 O GLY 102 16.929 60.122 43.638 1.00 0.00 O ATOM 261 N ILE 103 17.215 58.062 42.761 1.00 0.00 N ATOM 262 CA ILE 103 18.001 58.518 41.619 1.00 0.00 C ATOM 263 C ILE 103 17.162 58.445 40.360 1.00 0.00 C ATOM 264 O ILE 103 16.206 57.681 40.282 1.00 0.00 O ATOM 265 N ARG 104 15.904 57.567 36.706 1.00 0.00 N ATOM 266 CA ARG 104 15.919 56.420 35.808 1.00 0.00 C ATOM 267 C ARG 104 15.474 56.873 34.432 1.00 0.00 C ATOM 268 O ARG 104 14.788 57.893 34.298 1.00 0.00 O ATOM 269 N MET 105 15.859 56.092 33.421 1.00 0.00 N ATOM 270 CA MET 105 15.577 56.382 32.025 1.00 0.00 C ATOM 271 C MET 105 15.043 55.109 31.403 1.00 0.00 C ATOM 272 O MET 105 15.766 54.110 31.318 1.00 0.00 O ATOM 273 N ALA 106 13.779 55.161 30.986 1.00 0.00 N ATOM 274 CA ALA 106 13.074 54.011 30.461 1.00 0.00 C ATOM 275 C ALA 106 12.443 54.224 29.093 1.00 0.00 C ATOM 276 O ALA 106 12.091 55.339 28.718 1.00 0.00 O ATOM 277 N VAL 107 12.319 53.119 28.361 1.00 0.00 N ATOM 278 CA VAL 107 11.621 53.070 27.097 1.00 0.00 C ATOM 279 C VAL 107 10.591 51.963 27.329 1.00 0.00 C ATOM 280 O VAL 107 10.958 50.830 27.657 1.00 0.00 O ATOM 281 N VAL 108 9.314 52.309 27.228 1.00 0.00 N ATOM 282 CA VAL 108 8.228 51.361 27.459 1.00 0.00 C ATOM 283 C VAL 108 7.567 51.029 26.139 1.00 0.00 C ATOM 284 O VAL 108 7.280 51.924 25.354 1.00 0.00 O ATOM 285 N PHE 109 7.361 49.738 25.894 1.00 0.00 N ATOM 286 CA PHE 109 6.725 49.242 24.675 1.00 0.00 C ATOM 287 C PHE 109 5.326 48.813 25.080 1.00 0.00 C ATOM 288 O PHE 109 5.155 47.803 25.769 1.00 0.00 O ATOM 289 N ARG 110 4.329 49.609 24.688 1.00 0.00 N ATOM 290 CA ARG 110 2.954 49.352 25.090 1.00 0.00 C ATOM 291 C ARG 110 2.211 48.482 24.098 1.00 0.00 C ATOM 292 O ARG 110 2.465 48.540 22.894 1.00 0.00 O ATOM 293 N ASP 111 1.275 47.695 24.623 1.00 0.00 N ATOM 294 CA ASP 111 0.415 46.843 23.809 1.00 0.00 C ATOM 295 C ASP 111 -0.927 47.563 23.575 1.00 0.00 C ATOM 296 O ASP 111 -1.059 48.752 23.896 1.00 0.00 O ATOM 297 N LYS 112 -1.916 46.858 23.030 1.00 0.00 N ATOM 298 CA LYS 112 -3.225 47.472 22.757 1.00 0.00 C ATOM 299 C LYS 112 -4.031 47.832 24.006 1.00 0.00 C ATOM 300 O LYS 112 -5.031 48.540 23.909 1.00 0.00 O ATOM 301 N HIS 113 -3.627 47.326 25.162 1.00 0.00 N ATOM 302 CA HIS 113 -4.274 47.687 26.421 1.00 0.00 C ATOM 303 C HIS 113 -3.536 48.860 27.090 1.00 0.00 C ATOM 304 O HIS 113 -3.882 49.258 28.205 1.00 0.00 O ATOM 305 N GLN 114 -2.538 49.413 26.397 1.00 0.00 N ATOM 306 CA GLN 114 -1.693 50.499 26.913 1.00 0.00 C ATOM 307 C GLN 114 -0.919 50.051 28.149 1.00 0.00 C ATOM 308 O GLN 114 -0.601 50.851 29.028 1.00 0.00 O ATOM 309 N ALA 115 -0.611 48.756 28.186 1.00 0.00 N ATOM 310 CA ALA 115 0.144 48.155 29.263 1.00 0.00 C ATOM 311 C ALA 115 1.515 47.876 28.693 1.00 0.00 C ATOM 312 O ALA 115 1.635 47.544 27.517 1.00 0.00 O ATOM 313 N PRO 116 2.541 48.014 29.524 1.00 0.00 N ATOM 314 CA PRO 116 3.905 47.805 29.082 1.00 0.00 C ATOM 315 C PRO 116 4.167 46.311 28.932 1.00 0.00 C ATOM 316 O PRO 116 4.021 45.544 29.891 1.00 0.00 O ATOM 317 N VAL 117 4.517 45.902 27.716 1.00 0.00 N ATOM 318 CA VAL 117 4.838 44.511 27.416 1.00 0.00 C ATOM 319 C VAL 117 6.341 44.312 27.560 1.00 0.00 C ATOM 320 O VAL 117 6.820 43.194 27.612 1.00 0.00 O ATOM 321 N LEU 118 7.072 45.416 27.623 1.00 0.00 N ATOM 322 CA LEU 118 8.509 45.396 27.757 1.00 0.00 C ATOM 323 C LEU 118 8.966 46.796 28.167 1.00 0.00 C ATOM 324 O LEU 118 8.465 47.783 27.628 1.00 0.00 O ATOM 325 N ARG 119 9.883 46.878 29.131 1.00 0.00 N ATOM 326 CA ARG 119 10.522 48.156 29.463 1.00 0.00 C ATOM 327 C ARG 119 12.014 47.948 29.367 1.00 0.00 C ATOM 328 O ARG 119 12.517 46.899 29.774 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 328 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 39.00 77.8 162 61.4 264 ARMSMC SECONDARY STRUCTURE . . 23.35 87.5 104 64.2 162 ARMSMC SURFACE . . . . . . . . 43.58 73.3 105 64.0 164 ARMSMC BURIED . . . . . . . . 28.72 86.0 57 57.0 100 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 116 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 103 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 73 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 71 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 87 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.58 (Number of atoms: 82) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.58 82 61.7 133 CRMSCA CRN = ALL/NP . . . . . 0.0314 CRMSCA SECONDARY STRUCTURE . . 2.11 53 65.4 81 CRMSCA SURFACE . . . . . . . . 2.96 53 63.9 83 CRMSCA BURIED . . . . . . . . 1.65 29 58.0 50 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.56 328 50.0 656 CRMSMC SECONDARY STRUCTURE . . 2.12 212 52.6 403 CRMSMC SURFACE . . . . . . . . 2.94 212 52.0 408 CRMSMC BURIED . . . . . . . . 1.66 116 46.8 248 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 532 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 456 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 340 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 324 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 208 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.56 328 30.8 1064 CRMSALL SECONDARY STRUCTURE . . 2.12 212 31.9 664 CRMSALL SURFACE . . . . . . . . 2.94 212 32.3 656 CRMSALL BURIED . . . . . . . . 1.66 116 28.4 408 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.110 1.000 0.500 82 61.7 133 ERRCA SECONDARY STRUCTURE . . 1.718 1.000 0.500 53 65.4 81 ERRCA SURFACE . . . . . . . . 2.499 1.000 0.500 53 63.9 83 ERRCA BURIED . . . . . . . . 1.399 1.000 0.500 29 58.0 50 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.093 1.000 0.500 328 50.0 656 ERRMC SECONDARY STRUCTURE . . 1.724 1.000 0.500 212 52.6 403 ERRMC SURFACE . . . . . . . . 2.472 1.000 0.500 212 52.0 408 ERRMC BURIED . . . . . . . . 1.400 1.000 0.500 116 46.8 248 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 532 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 456 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 340 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 324 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 208 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.093 1.000 0.500 328 30.8 1064 ERRALL SECONDARY STRUCTURE . . 1.724 1.000 0.500 212 31.9 664 ERRALL SURFACE . . . . . . . . 2.472 1.000 0.500 212 32.3 656 ERRALL BURIED . . . . . . . . 1.400 1.000 0.500 116 28.4 408 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 52 62 76 82 82 133 DISTCA CA (P) 15.79 39.10 46.62 57.14 61.65 133 DISTCA CA (RMS) 0.81 1.28 1.48 2.13 2.58 DISTCA ALL (N) 70 214 257 309 328 328 1064 DISTALL ALL (P) 6.58 20.11 24.15 29.04 30.83 1064 DISTALL ALL (RMS) 0.76 1.29 1.54 2.19 2.56 DISTALL END of the results output