####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 51 ( 204), selected 51 , name T0575TS328_1-D1 # Molecule2: number of CA atoms 63 ( 499), selected 51 , name T0575-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0575TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 13 - 63 1.38 1.38 LCS_AVERAGE: 80.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 13 - 63 1.38 1.38 LCS_AVERAGE: 80.95 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 20 - 57 1.00 1.49 LCS_AVERAGE: 54.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 51 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 13 K 13 22 51 51 14 18 27 41 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT R 14 R 14 24 51 51 14 18 27 41 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT S 15 S 15 24 51 51 14 18 28 42 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT R 16 R 16 30 51 51 14 18 29 44 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT L 17 L 17 30 51 51 14 18 31 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT I 18 I 18 30 51 51 14 18 36 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT D 19 D 19 35 51 51 14 23 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT V 20 V 20 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT L 21 L 21 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT L 22 L 22 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT D 23 D 23 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT E 24 E 24 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT F 25 F 25 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT A 26 A 26 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Q 27 Q 27 38 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT N 28 N 28 38 51 51 5 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT D 29 D 29 38 51 51 4 9 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Y 30 Y 30 38 51 51 5 28 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT D 31 D 31 38 51 51 5 28 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT S 32 S 32 38 51 51 10 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT V 33 V 33 38 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT S 34 S 34 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT I 35 I 35 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT N 36 N 36 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT R 37 R 37 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT I 38 I 38 38 51 51 12 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT T 39 T 39 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT E 40 E 40 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT R 41 R 41 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT A 42 A 42 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT G 43 G 43 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT I 44 I 44 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT A 45 A 45 38 51 51 11 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT K 46 K 46 38 51 51 3 13 31 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT G 47 G 47 38 51 51 3 5 25 44 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT S 48 S 48 38 51 51 3 21 39 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT F 49 F 49 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Y 50 Y 50 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Q 51 Q 51 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Y 52 Y 52 38 51 51 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT F 53 F 53 38 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT A 54 A 54 38 51 51 8 23 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT D 55 D 55 38 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT K 56 K 56 38 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT K 57 K 57 38 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT D 58 D 58 28 51 51 8 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT C 59 C 59 28 51 51 8 23 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Y 60 Y 60 17 51 51 8 23 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT L 61 L 61 17 51 51 8 23 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT Y 62 Y 62 17 51 51 8 23 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_GDT L 63 L 63 17 51 51 8 20 36 44 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 LCS_AVERAGE LCS_A: 72.26 ( 54.87 80.95 80.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 32 41 45 49 51 51 51 51 51 51 51 51 51 51 51 51 51 51 51 GDT PERCENT_AT 22.22 50.79 65.08 71.43 77.78 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 80.95 GDT RMS_LOCAL 0.28 0.77 0.96 1.11 1.28 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 GDT RMS_ALL_AT 2.75 1.46 1.44 1.42 1.39 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 1.38 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 13 K 13 2.889 5 0.025 0.025 3.083 55.357 24.603 LGA R 14 R 14 2.812 7 0.043 0.043 2.913 59.048 21.472 LGA S 15 S 15 2.566 2 0.025 0.025 2.699 60.952 40.635 LGA R 16 R 16 2.091 7 0.018 0.018 2.277 68.810 25.022 LGA L 17 L 17 1.936 4 0.019 0.019 2.032 70.833 35.417 LGA I 18 I 18 1.642 4 0.025 0.025 1.804 77.143 38.571 LGA D 19 D 19 1.196 4 0.032 0.032 1.387 85.952 42.976 LGA V 20 V 20 0.584 3 0.050 0.050 0.766 90.476 51.701 LGA L 21 L 21 0.967 4 0.058 0.058 1.056 88.214 44.107 LGA L 22 L 22 0.641 4 0.033 0.033 0.791 92.857 46.429 LGA D 23 D 23 0.165 4 0.026 0.026 0.530 97.619 48.810 LGA E 24 E 24 0.913 5 0.032 0.032 1.207 85.952 38.201 LGA F 25 F 25 1.100 7 0.086 0.086 1.555 81.548 29.654 LGA A 26 A 26 0.786 1 0.019 0.019 0.799 90.476 72.381 LGA Q 27 Q 27 0.724 5 0.119 0.119 0.740 90.476 40.212 LGA N 28 N 28 0.987 4 0.682 0.682 3.186 78.095 39.048 LGA D 29 D 29 1.677 4 0.067 0.067 1.708 72.857 36.429 LGA Y 30 Y 30 1.237 8 0.024 0.024 1.295 83.690 27.897 LGA D 31 D 31 1.106 4 0.139 0.139 1.174 83.690 41.845 LGA S 32 S 32 0.224 2 0.192 0.192 1.140 95.357 63.571 LGA V 33 V 33 0.846 3 0.066 0.066 0.846 92.857 53.061 LGA S 34 S 34 0.926 2 0.111 0.111 0.926 92.857 61.905 LGA I 35 I 35 0.900 4 0.027 0.027 0.961 90.476 45.238 LGA N 36 N 36 0.866 4 0.034 0.034 0.880 90.476 45.238 LGA R 37 R 37 0.562 7 0.040 0.040 0.788 90.476 32.900 LGA I 38 I 38 0.989 4 0.037 0.037 1.025 85.952 42.976 LGA T 39 T 39 1.100 3 0.057 0.057 1.427 81.429 46.531 LGA E 40 E 40 0.880 5 0.028 0.028 1.152 85.952 38.201 LGA R 41 R 41 1.138 7 0.022 0.022 1.138 81.429 29.610 LGA A 42 A 42 0.880 1 0.014 0.014 0.936 90.476 72.381 LGA G 43 G 43 0.898 0 0.053 0.053 0.898 90.476 90.476 LGA I 44 I 44 0.924 4 0.056 0.056 1.417 85.952 42.976 LGA A 45 A 45 1.076 1 0.030 0.030 1.414 83.690 66.952 LGA K 46 K 46 2.267 5 0.639 0.639 4.486 57.976 25.767 LGA G 47 G 47 2.485 0 0.083 0.083 2.527 62.857 62.857 LGA S 48 S 48 2.107 2 0.080 0.080 2.107 68.810 45.873 LGA F 49 F 49 0.868 7 0.070 0.070 1.285 90.595 32.944 LGA Y 50 Y 50 0.506 8 0.189 0.189 1.094 90.595 30.198 LGA Q 51 Q 51 0.457 5 0.203 0.203 0.721 97.619 43.386 LGA Y 52 Y 52 0.901 8 0.056 0.056 0.901 90.476 30.159 LGA F 53 F 53 1.063 7 0.635 0.635 2.531 77.619 28.225 LGA A 54 A 54 1.591 1 0.090 0.090 1.860 72.857 58.286 LGA D 55 D 55 1.210 4 0.026 0.026 1.361 81.429 40.714 LGA K 56 K 56 0.926 5 0.026 0.026 1.048 88.214 39.206 LGA K 57 K 57 1.030 5 0.027 0.027 1.128 83.690 37.196 LGA D 58 D 58 1.028 4 0.017 0.017 1.287 81.429 40.714 LGA C 59 C 59 1.271 2 0.028 0.028 1.365 81.429 54.286 LGA Y 60 Y 60 1.462 8 0.030 0.030 1.742 77.143 25.714 LGA L 61 L 61 1.590 4 0.051 0.051 1.864 72.857 36.429 LGA Y 62 Y 62 1.609 8 0.027 0.027 2.066 70.833 23.611 LGA L 63 L 63 2.186 4 0.038 0.038 2.476 66.786 33.393 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 51 204 204 100.00 405 204 50.37 63 SUMMARY(RMSD_GDC): 1.382 1.417 1.417 66.113 34.387 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 51 63 4.0 51 1.38 71.032 76.511 3.441 LGA_LOCAL RMSD: 1.382 Number of atoms: 51 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.382 Number of assigned atoms: 51 Std_ASGN_ATOMS RMSD: 1.382 Standard rmsd on all 51 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.807108 * X + -0.588264 * Y + 0.050220 * Z + 19.493744 Y_new = -0.590345 * X + -0.802912 * Y + 0.082612 * Z + 29.040901 Z_new = -0.008275 * X + -0.096324 * Y + -0.995316 * Z + 39.325924 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.631512 0.008275 -3.045116 [DEG: -36.1830 0.4741 -174.4723 ] ZXZ: 2.595383 3.044762 -3.055891 [DEG: 148.7045 174.4520 -175.0897 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0575TS328_1-D1 REMARK 2: T0575-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0575TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 51 63 4.0 51 1.38 76.511 1.38 REMARK ---------------------------------------------------------- MOLECULE T0575TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0575 REMARK MODEL 1 REMARK PARENT 2id6_A ATOM 1 N LYS 13 25.870 9.442 50.115 1.00 3.00 N ATOM 2 CA LYS 13 24.674 8.892 50.741 1.00 3.00 C ATOM 3 C LYS 13 23.411 9.258 49.950 1.00 3.00 C ATOM 4 O LYS 13 22.499 8.425 49.788 1.00 3.00 O ATOM 5 N ARG 14 23.359 10.468 49.402 1.00 3.00 N ATOM 6 CA ARG 14 22.227 10.844 48.562 1.00 3.00 C ATOM 7 C ARG 14 22.138 9.907 47.344 1.00 3.00 C ATOM 8 O ARG 14 21.070 9.385 47.031 1.00 3.00 O ATOM 9 N SER 15 23.263 9.702 46.666 1.00 3.00 N ATOM 10 CA SER 15 23.289 8.836 45.470 1.00 3.00 C ATOM 11 C SER 15 22.967 7.371 45.842 1.00 3.00 C ATOM 12 O SER 15 22.337 6.647 45.064 1.00 3.00 O ATOM 13 N ARG 16 23.443 6.923 47.007 1.00 3.00 N ATOM 14 CA ARG 16 23.101 5.572 47.500 1.00 3.00 C ATOM 15 C ARG 16 21.589 5.445 47.705 1.00 3.00 C ATOM 16 O ARG 16 20.982 4.443 47.341 1.00 3.00 O ATOM 17 N LEU 17 20.965 6.464 48.284 1.00 3.00 N ATOM 18 CA LEU 17 19.522 6.447 48.522 1.00 3.00 C ATOM 19 C LEU 17 18.783 6.486 47.174 1.00 3.00 C ATOM 20 O LEU 17 17.818 5.730 46.968 1.00 3.00 O ATOM 21 N ILE 18 19.261 7.338 46.271 1.00 3.00 N ATOM 22 CA ILE 18 18.637 7.427 44.916 1.00 3.00 C ATOM 23 C ILE 18 18.720 6.102 44.165 1.00 3.00 C ATOM 24 O ILE 18 17.733 5.683 43.520 1.00 3.00 O ATOM 25 N ASP 19 19.873 5.433 44.244 1.00 3.00 N ATOM 26 CA ASP 19 20.036 4.094 43.615 1.00 3.00 C ATOM 27 C ASP 19 19.022 3.073 44.129 1.00 3.00 C ATOM 28 O ASP 19 18.371 2.360 43.352 1.00 3.00 O ATOM 29 N VAL 20 18.925 2.982 45.449 1.00 3.00 N ATOM 30 CA VAL 20 17.995 2.068 46.099 1.00 3.00 C ATOM 31 C VAL 20 16.575 2.463 45.765 1.00 3.00 C ATOM 32 O VAL 20 15.737 1.594 45.597 1.00 3.00 O ATOM 33 N LEU 21 16.304 3.767 45.683 1.00 3.00 N ATOM 34 CA LEU 21 14.937 4.223 45.396 1.00 3.00 C ATOM 35 C LEU 21 14.523 3.787 43.982 1.00 3.00 C ATOM 36 O LEU 21 13.440 3.195 43.770 1.00 3.00 O ATOM 37 N LEU 22 15.407 4.002 43.022 1.00 3.00 N ATOM 38 CA LEU 22 15.173 3.523 41.653 1.00 3.00 C ATOM 39 C LEU 22 14.874 2.013 41.627 1.00 3.00 C ATOM 40 O LEU 22 13.921 1.561 40.967 1.00 3.00 O ATOM 41 N ASP 23 15.681 1.225 42.334 1.00 3.00 N ATOM 42 CA ASP 23 15.467 -0.225 42.453 1.00 3.00 C ATOM 43 C ASP 23 14.109 -0.575 43.044 1.00 3.00 C ATOM 44 O ASP 23 13.335 -1.315 42.405 1.00 3.00 O ATOM 45 N GLU 24 13.824 -0.045 44.240 1.00 3.00 N ATOM 46 CA GLU 24 12.597 -0.398 44.958 1.00 3.00 C ATOM 47 C GLU 24 11.338 0.084 44.247 1.00 3.00 C ATOM 48 O GLU 24 10.415 -0.712 44.034 1.00 3.00 O ATOM 49 N PHE 25 11.307 1.357 43.844 1.00 3.00 N ATOM 50 CA PHE 25 10.171 1.879 43.061 1.00 3.00 C ATOM 51 C PHE 25 9.967 1.105 41.744 1.00 3.00 C ATOM 52 O PHE 25 8.830 0.851 41.352 1.00 3.00 O ATOM 53 N ALA 26 11.051 0.713 41.064 1.00 3.00 N ATOM 54 CA ALA 26 10.922 -0.073 39.822 1.00 3.00 C ATOM 55 C ALA 26 10.286 -1.436 40.093 1.00 3.00 C ATOM 56 O ALA 26 9.517 -1.936 39.306 1.00 3.00 O ATOM 57 N GLN 27 10.597 -2.019 41.239 1.00 3.00 N ATOM 58 CA GLN 27 10.147 -3.364 41.571 1.00 3.00 C ATOM 59 C GLN 27 8.720 -3.378 42.104 1.00 3.00 C ATOM 60 O GLN 27 7.953 -4.293 41.800 1.00 3.00 O ATOM 61 N ASN 28 8.360 -2.355 42.873 1.00 3.00 N ATOM 62 CA ASN 28 7.120 -2.390 43.638 1.00 3.00 C ATOM 63 C ASN 28 6.100 -1.334 43.242 1.00 3.00 C ATOM 64 O ASN 28 4.939 -1.414 43.636 1.00 3.00 O ATOM 65 N ASP 29 6.531 -0.359 42.450 1.00 3.00 N ATOM 66 CA ASP 29 5.693 0.801 42.173 1.00 3.00 C ATOM 67 C ASP 29 5.789 1.802 43.320 1.00 3.00 C ATOM 68 O ASP 29 6.344 1.491 44.381 1.00 3.00 O ATOM 69 N TYR 30 5.227 2.998 43.103 1.00 3.00 N ATOM 70 CA TYR 30 5.312 4.090 44.065 1.00 3.00 C ATOM 71 C TYR 30 4.552 3.799 45.351 1.00 3.00 C ATOM 72 O TYR 30 5.075 3.990 46.444 1.00 3.00 O ATOM 73 N ASP 31 3.303 3.385 45.199 1.00 3.00 N ATOM 74 CA ASP 31 2.427 3.187 46.352 1.00 3.00 C ATOM 75 C ASP 31 2.920 2.116 47.301 1.00 3.00 C ATOM 76 O ASP 31 2.981 2.366 48.497 1.00 3.00 O ATOM 77 N SER 32 3.259 0.944 46.764 1.00 3.00 N ATOM 78 CA SER 32 3.698 -0.192 47.554 1.00 3.00 C ATOM 79 C SER 32 5.080 0.021 48.187 1.00 3.00 C ATOM 80 O SER 32 5.300 -0.384 49.332 1.00 3.00 O ATOM 81 N VAL 33 5.981 0.697 47.467 1.00 3.00 N ATOM 82 CA VAL 33 7.351 0.910 47.966 1.00 3.00 C ATOM 83 C VAL 33 7.307 1.609 49.317 1.00 3.00 C ATOM 84 O VAL 33 6.449 2.468 49.560 1.00 3.00 O ATOM 85 N SER 34 8.220 1.239 50.210 1.00 3.00 N ATOM 86 CA SER 34 8.318 1.905 51.499 1.00 3.00 C ATOM 87 C SER 34 9.658 2.606 51.649 1.00 3.00 C ATOM 88 O SER 34 10.681 2.080 51.199 1.00 3.00 O ATOM 89 N ILE 35 9.657 3.782 52.279 1.00 3.00 N ATOM 90 CA ILE 35 10.922 4.465 52.559 1.00 3.00 C ATOM 91 C ILE 35 11.798 3.605 53.475 1.00 3.00 C ATOM 92 O ILE 35 13.030 3.615 53.341 1.00 3.00 O ATOM 93 N ASN 36 11.192 2.834 54.392 1.00 3.00 N ATOM 94 CA ASN 36 12.026 2.022 55.288 1.00 3.00 C ATOM 95 C ASN 36 12.841 0.979 54.506 1.00 3.00 C ATOM 96 O ASN 36 14.023 0.737 54.802 1.00 3.00 O ATOM 97 N ARG 37 12.233 0.385 53.481 1.00 3.00 N ATOM 98 CA ARG 37 12.939 -0.640 52.710 1.00 3.00 C ATOM 99 C ARG 37 13.956 -0.016 51.757 1.00 3.00 C ATOM 100 O ARG 37 14.999 -0.609 51.478 1.00 3.00 O ATOM 101 N ILE 38 13.649 1.182 51.277 1.00 3.00 N ATOM 102 CA ILE 38 14.642 1.959 50.532 1.00 3.00 C ATOM 103 C ILE 38 15.860 2.239 51.436 1.00 3.00 C ATOM 104 O ILE 38 16.996 2.023 51.027 1.00 3.00 O ATOM 105 N THR 39 15.636 2.682 52.673 1.00 3.00 N ATOM 106 CA THR 39 16.773 2.960 53.557 1.00 3.00 C ATOM 107 C THR 39 17.571 1.696 53.852 1.00 3.00 C ATOM 108 O THR 39 18.794 1.708 53.758 1.00 3.00 O ATOM 109 N GLU 40 16.880 0.601 54.169 1.00 3.00 N ATOM 110 CA GLU 40 17.555 -0.681 54.374 1.00 3.00 C ATOM 111 C GLU 40 18.363 -1.094 53.127 1.00 3.00 C ATOM 112 O GLU 40 19.497 -1.549 53.245 1.00 3.00 O ATOM 113 N ARG 41 17.779 -0.932 51.937 1.00 3.00 N ATOM 114 CA ARG 41 18.477 -1.338 50.727 1.00 3.00 C ATOM 115 C ARG 41 19.724 -0.482 50.493 1.00 3.00 C ATOM 116 O ARG 41 20.733 -0.999 50.015 1.00 3.00 O ATOM 117 N ALA 42 19.622 0.798 50.848 1.00 3.00 N ATOM 118 CA ALA 42 20.699 1.800 50.700 1.00 3.00 C ATOM 119 C ALA 42 21.757 1.704 51.795 1.00 3.00 C ATOM 120 O ALA 42 22.858 2.265 51.660 1.00 3.00 O ATOM 121 N GLY 43 21.431 0.988 52.884 1.00 3.00 N ATOM 122 CA GLY 43 22.375 0.833 54.009 1.00 3.00 C ATOM 123 C GLY 43 22.505 2.109 54.821 1.00 3.00 C ATOM 124 O GLY 43 23.594 2.448 55.321 1.00 3.00 O ATOM 125 N ILE 44 21.399 2.844 54.941 1.00 3.00 N ATOM 126 CA ILE 44 21.420 4.095 55.684 1.00 3.00 C ATOM 127 C ILE 44 20.369 4.036 56.787 1.00 3.00 C ATOM 128 O ILE 44 19.396 3.283 56.692 1.00 3.00 O ATOM 129 N ALA 45 20.583 4.823 57.835 1.00 3.00 N ATOM 130 CA ALA 45 19.620 4.895 58.924 1.00 3.00 C ATOM 131 C ALA 45 18.302 5.436 58.391 1.00 3.00 C ATOM 132 O ALA 45 18.287 6.273 57.473 1.00 3.00 O ATOM 133 N LYS 46 17.187 4.953 58.947 1.00 3.00 N ATOM 134 CA LYS 46 15.865 5.328 58.434 1.00 3.00 C ATOM 135 C LYS 46 15.637 6.858 58.402 1.00 3.00 C ATOM 136 O LYS 46 15.019 7.376 57.479 1.00 3.00 O ATOM 137 N GLY 47 16.166 7.561 59.406 1.00 3.00 N ATOM 138 CA GLY 47 16.047 9.017 59.513 1.00 3.00 C ATOM 139 C GLY 47 16.721 9.817 58.412 1.00 3.00 C ATOM 140 O GLY 47 16.411 10.998 58.203 1.00 3.00 O ATOM 141 N SER 48 17.627 9.176 57.679 1.00 3.00 N ATOM 142 CA SER 48 18.424 9.879 56.665 1.00 3.00 C ATOM 143 C SER 48 17.598 10.171 55.429 1.00 3.00 C ATOM 144 O SER 48 17.889 11.100 54.677 1.00 3.00 O ATOM 145 N PHE 49 16.542 9.401 55.236 1.00 3.00 N ATOM 146 CA PHE 49 15.656 9.659 54.108 1.00 3.00 C ATOM 147 C PHE 49 14.907 10.987 54.307 1.00 3.00 C ATOM 148 O PHE 49 14.898 11.831 53.422 1.00 3.00 O ATOM 149 N TYR 50 14.381 11.216 55.506 1.00 3.00 N ATOM 150 CA TYR 50 13.841 12.540 55.841 1.00 3.00 C ATOM 151 C TYR 50 14.906 13.642 55.663 1.00 3.00 C ATOM 152 O TYR 50 14.657 14.703 55.092 1.00 3.00 O ATOM 153 N GLN 51 16.095 13.376 56.183 1.00 3.00 N ATOM 154 CA GLN 51 17.150 14.366 56.214 1.00 3.00 C ATOM 155 C GLN 51 17.403 14.922 54.814 1.00 3.00 C ATOM 156 O GLN 51 17.408 16.132 54.602 1.00 3.00 O ATOM 157 N TYR 52 17.516 14.030 53.841 1.00 3.00 N ATOM 158 CA TYR 52 17.873 14.429 52.480 1.00 3.00 C ATOM 159 C TYR 52 16.661 14.675 51.570 1.00 3.00 C ATOM 160 O TYR 52 16.742 15.460 50.587 1.00 3.00 O ATOM 161 N PHE 53 15.553 13.975 51.828 1.00 3.00 N ATOM 162 CA PHE 53 14.438 13.995 50.864 1.00 3.00 C ATOM 163 C PHE 53 13.052 14.285 51.404 1.00 3.00 C ATOM 164 O PHE 53 12.093 14.264 50.626 1.00 3.00 O ATOM 165 N ALA 54 12.956 14.553 52.703 1.00 3.00 N ATOM 166 CA ALA 54 11.717 15.024 53.377 1.00 3.00 C ATOM 167 C ALA 54 10.633 13.953 53.445 1.00 3.00 C ATOM 168 O ALA 54 10.196 13.592 54.535 1.00 3.00 O ATOM 169 N ASP 55 10.204 13.437 52.286 1.00 3.00 N ATOM 170 CA ASP 55 9.149 12.423 52.239 1.00 3.00 C ATOM 171 C ASP 55 9.262 11.526 51.014 1.00 3.00 C ATOM 172 O ASP 55 10.109 11.763 50.145 1.00 3.00 O ATOM 173 N LYS 56 8.431 10.489 50.952 1.00 3.00 N ATOM 174 CA LYS 56 8.427 9.569 49.813 1.00 3.00 C ATOM 175 C LYS 56 8.117 10.254 48.464 1.00 3.00 C ATOM 176 O LYS 56 8.684 9.880 47.439 1.00 3.00 O ATOM 177 N LYS 57 7.225 11.242 48.462 1.00 3.00 N ATOM 178 CA LYS 57 6.893 11.930 47.226 1.00 3.00 C ATOM 179 C LYS 57 8.125 12.670 46.686 1.00 3.00 C ATOM 180 O LYS 57 8.432 12.587 45.495 1.00 3.00 O ATOM 181 N ASP 58 8.790 13.418 47.563 1.00 3.00 N ATOM 182 CA ASP 58 9.965 14.169 47.158 1.00 3.00 C ATOM 183 C ASP 58 11.103 13.221 46.717 1.00 3.00 C ATOM 184 O ASP 58 11.842 13.538 45.772 1.00 3.00 O ATOM 185 N CYS 59 11.215 12.072 47.374 1.00 3.00 N ATOM 186 CA CYS 59 12.257 11.095 47.023 1.00 3.00 C ATOM 187 C CYS 59 11.990 10.570 45.601 1.00 3.00 C ATOM 188 O CYS 59 12.891 10.521 44.749 1.00 3.00 O ATOM 189 N TYR 60 10.748 10.178 45.357 1.00 3.00 N ATOM 190 CA TYR 60 10.364 9.708 44.004 1.00 3.00 C ATOM 191 C TYR 60 10.659 10.811 42.970 1.00 3.00 C ATOM 192 O TYR 60 11.223 10.547 41.883 1.00 3.00 O ATOM 193 N LEU 61 10.292 12.042 43.311 1.00 3.00 N ATOM 194 CA LEU 61 10.485 13.179 42.393 1.00 3.00 C ATOM 195 C LEU 61 11.959 13.326 42.062 1.00 3.00 C ATOM 196 O LEU 61 12.333 13.435 40.887 1.00 3.00 O ATOM 197 N TYR 62 12.800 13.366 43.093 1.00 3.00 N ATOM 198 CA TYR 62 14.240 13.526 42.894 1.00 3.00 C ATOM 199 C TYR 62 14.844 12.363 42.093 1.00 3.00 C ATOM 200 O TYR 62 15.705 12.575 41.218 1.00 3.00 O ATOM 201 N LEU 63 14.373 11.148 42.348 1.00 3.00 N ATOM 202 CA LEU 63 14.886 10.013 41.582 1.00 3.00 C ATOM 203 C LEU 63 14.458 10.172 40.125 1.00 3.00 C ATOM 204 O LEU 63 15.264 9.911 39.222 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 204 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 38.50 90.0 100 80.6 124 ARMSMC SECONDARY STRUCTURE . . 7.22 100.0 59 92.2 64 ARMSMC SURFACE . . . . . . . . 43.64 86.8 68 79.1 86 ARMSMC BURIED . . . . . . . . 24.17 96.9 32 84.2 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 50 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.38 (Number of atoms: 51) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.38 51 81.0 63 CRMSCA CRN = ALL/NP . . . . . 0.0271 CRMSCA SECONDARY STRUCTURE . . 1.40 30 93.8 32 CRMSCA SURFACE . . . . . . . . 1.47 35 79.5 44 CRMSCA BURIED . . . . . . . . 1.16 16 84.2 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.42 204 65.2 313 CRMSMC SECONDARY STRUCTURE . . 1.39 120 75.0 160 CRMSMC SURFACE . . . . . . . . 1.52 140 64.2 218 CRMSMC BURIED . . . . . . . . 1.16 64 67.4 95 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 247 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 221 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 124 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 165 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 82 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.42 204 40.9 499 CRMSALL SECONDARY STRUCTURE . . 1.39 120 47.6 252 CRMSALL SURFACE . . . . . . . . 1.52 140 41.1 341 CRMSALL BURIED . . . . . . . . 1.16 64 40.5 158 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.769 0.447 0.512 51 81.0 63 ERRCA SECONDARY STRUCTURE . . 1.759 0.444 0.513 30 93.8 32 ERRCA SURFACE . . . . . . . . 1.705 0.432 0.492 35 79.5 44 ERRCA BURIED . . . . . . . . 1.909 0.478 0.556 16 84.2 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.767 0.445 0.509 204 65.2 313 ERRMC SECONDARY STRUCTURE . . 1.760 0.442 0.510 120 75.0 160 ERRMC SURFACE . . . . . . . . 1.697 0.427 0.484 140 64.2 218 ERRMC BURIED . . . . . . . . 1.919 0.485 0.564 64 67.4 95 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 247 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 221 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 124 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 165 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 82 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.767 0.445 0.509 204 40.9 499 ERRALL SECONDARY STRUCTURE . . 1.760 0.442 0.510 120 47.6 252 ERRALL SURFACE . . . . . . . . 1.697 0.427 0.484 140 41.1 341 ERRALL BURIED . . . . . . . . 1.919 0.485 0.564 64 40.5 158 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 24 43 51 51 51 51 63 DISTCA CA (P) 38.10 68.25 80.95 80.95 80.95 63 DISTCA CA (RMS) 0.80 1.07 1.38 1.38 1.38 DISTCA ALL (N) 89 174 201 204 204 204 499 DISTALL ALL (P) 17.84 34.87 40.28 40.88 40.88 499 DISTALL ALL (RMS) 0.76 1.10 1.36 1.42 1.42 DISTALL END of the results output