####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 55 ( 220), selected 55 , name T0575AL396_1-D1 # Molecule2: number of CA atoms 63 ( 499), selected 55 , name T0575-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0575AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 55 9 - 63 1.74 1.74 LCS_AVERAGE: 87.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 55 9 - 63 1.74 1.74 LCS_AVERAGE: 87.30 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 16 - 45 1.00 1.90 LCS_AVERAGE: 38.96 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 55 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 9 L 9 3 55 55 2 5 9 13 20 33 42 53 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT P 10 P 10 21 55 55 9 17 27 44 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT E 11 E 11 24 55 55 11 19 31 44 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT E 12 E 12 24 55 55 11 19 31 44 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT K 13 K 13 24 55 55 9 19 31 44 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT R 14 R 14 24 55 55 9 19 31 44 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT S 15 S 15 24 55 55 11 19 31 45 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT R 16 R 16 30 55 55 11 19 31 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT L 17 L 17 30 55 55 11 19 34 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT I 18 I 18 30 55 55 11 20 35 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT D 19 D 19 30 55 55 11 22 37 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT V 20 V 20 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT L 21 L 21 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT L 22 L 22 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT D 23 D 23 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT E 24 E 24 30 55 55 8 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT F 25 F 25 30 55 55 8 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT A 26 A 26 30 55 55 10 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Q 27 Q 27 30 55 55 8 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT N 28 N 28 30 55 55 8 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT D 29 D 29 30 55 55 3 10 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Y 30 Y 30 30 55 55 3 23 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT D 31 D 31 30 55 55 3 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT S 32 S 32 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT V 33 V 33 30 55 55 3 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT S 34 S 34 30 55 55 3 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT I 35 I 35 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT N 36 N 36 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT R 37 R 37 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT I 38 I 38 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT T 39 T 39 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT E 40 E 40 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT R 41 R 41 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT A 42 A 42 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT G 43 G 43 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT I 44 I 44 30 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT A 45 A 45 30 55 55 3 13 25 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT K 46 K 46 17 55 55 3 5 9 27 47 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT G 47 G 47 17 55 55 3 5 17 45 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT S 48 S 48 17 55 55 9 17 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT F 49 F 49 17 55 55 6 16 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Y 50 Y 50 17 55 55 6 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Q 51 Q 51 17 55 55 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Y 52 Y 52 17 55 55 10 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT F 53 F 53 17 55 55 6 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT A 54 A 54 17 55 55 5 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT D 55 D 55 17 55 55 9 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT K 56 K 56 17 55 55 9 24 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT K 57 K 57 17 55 55 9 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT D 58 D 58 17 55 55 9 23 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT C 59 C 59 17 55 55 9 23 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Y 60 Y 60 17 55 55 9 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT L 61 L 61 17 55 55 9 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT Y 62 Y 62 17 55 55 8 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_GDT L 63 L 63 17 55 55 8 22 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 LCS_AVERAGE LCS_A: 71.19 ( 38.96 87.30 87.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 25 41 46 50 53 54 54 55 55 55 55 55 55 55 55 55 55 55 55 GDT PERCENT_AT 17.46 39.68 65.08 73.02 79.37 84.13 85.71 85.71 87.30 87.30 87.30 87.30 87.30 87.30 87.30 87.30 87.30 87.30 87.30 87.30 GDT RMS_LOCAL 0.23 0.75 1.01 1.19 1.38 1.51 1.57 1.57 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 GDT RMS_ALL_AT 2.01 1.88 1.89 1.80 1.75 1.75 1.75 1.75 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 9 L 9 5.954 4 0.672 0.672 7.248 23.690 11.845 LGA P 10 P 10 2.981 3 0.600 0.600 2.981 61.071 34.898 LGA E 11 E 11 2.768 5 0.068 0.068 2.823 59.048 26.243 LGA E 12 E 12 2.409 5 0.090 0.090 2.595 62.857 27.937 LGA K 13 K 13 2.386 5 0.015 0.015 2.424 64.762 28.783 LGA R 14 R 14 2.257 7 0.064 0.064 2.330 64.762 23.550 LGA S 15 S 15 2.037 2 0.029 0.029 2.175 68.810 45.873 LGA R 16 R 16 1.703 7 0.033 0.033 1.842 75.000 27.273 LGA L 17 L 17 1.660 4 0.010 0.010 1.704 75.000 37.500 LGA I 18 I 18 1.540 4 0.024 0.024 1.622 77.143 38.571 LGA D 19 D 19 1.360 4 0.091 0.091 1.360 85.952 42.976 LGA V 20 V 20 0.679 3 0.074 0.074 0.987 90.476 51.701 LGA L 21 L 21 0.902 4 0.086 0.086 0.998 90.476 45.238 LGA L 22 L 22 0.790 4 0.046 0.046 0.893 90.476 45.238 LGA D 23 D 23 0.231 4 0.052 0.052 0.676 97.619 48.810 LGA E 24 E 24 0.748 5 0.019 0.019 0.955 92.857 41.270 LGA F 25 F 25 0.988 7 0.105 0.105 1.664 83.810 30.476 LGA A 26 A 26 0.767 1 0.125 0.125 0.767 90.476 72.381 LGA Q 27 Q 27 0.713 5 0.216 0.216 0.755 90.476 40.212 LGA N 28 N 28 1.099 4 0.680 0.680 3.342 73.571 36.786 LGA D 29 D 29 1.521 4 0.034 0.034 1.521 79.286 39.643 LGA Y 30 Y 30 1.180 8 0.013 0.013 1.302 83.690 27.897 LGA D 31 D 31 0.839 4 0.025 0.025 0.987 90.476 45.238 LGA S 32 S 32 0.663 2 0.126 0.126 0.775 92.857 61.905 LGA V 33 V 33 1.051 3 0.073 0.073 1.051 92.976 53.129 LGA S 34 S 34 0.981 2 0.119 0.119 0.981 90.476 60.317 LGA I 35 I 35 0.868 4 0.185 0.185 0.997 90.476 45.238 LGA N 36 N 36 0.987 4 0.033 0.033 1.169 85.952 42.976 LGA R 37 R 37 0.807 7 0.082 0.082 1.214 88.214 32.078 LGA I 38 I 38 0.973 4 0.052 0.052 1.096 85.952 42.976 LGA T 39 T 39 1.144 3 0.046 0.046 1.326 81.429 46.531 LGA E 40 E 40 1.043 5 0.049 0.049 1.264 81.429 36.190 LGA R 41 R 41 1.036 7 0.043 0.043 1.036 88.214 32.078 LGA A 42 A 42 1.030 1 0.060 0.060 1.041 85.952 68.762 LGA G 43 G 43 1.010 0 0.115 0.115 1.026 85.952 85.952 LGA I 44 I 44 0.963 4 0.019 0.019 1.732 81.548 40.774 LGA A 45 A 45 1.929 1 0.049 0.049 2.146 72.976 58.381 LGA K 46 K 46 3.461 5 0.647 0.647 5.105 45.833 20.370 LGA G 47 G 47 2.751 0 0.126 0.126 3.173 57.262 57.262 LGA S 48 S 48 2.345 2 0.183 0.183 2.345 66.786 44.524 LGA F 49 F 49 2.249 7 0.097 0.097 2.318 64.762 23.550 LGA Y 50 Y 50 1.683 8 0.035 0.035 1.858 77.143 25.714 LGA Q 51 Q 51 1.015 5 0.108 0.108 1.273 85.952 38.201 LGA Y 52 Y 52 1.378 8 0.072 0.072 1.420 81.429 27.143 LGA F 53 F 53 1.611 7 0.142 0.142 1.968 72.857 26.494 LGA A 54 A 54 1.906 1 0.155 0.155 1.906 75.000 60.000 LGA D 55 D 55 1.249 4 0.075 0.075 1.642 79.286 39.643 LGA K 56 K 56 1.237 5 0.051 0.051 1.249 81.429 36.190 LGA K 57 K 57 1.333 5 0.106 0.106 1.333 83.690 37.196 LGA D 58 D 58 1.294 4 0.019 0.019 1.377 81.429 40.714 LGA C 59 C 59 1.303 2 0.016 0.016 1.303 81.429 54.286 LGA Y 60 Y 60 1.443 8 0.050 0.050 1.691 77.143 25.714 LGA L 61 L 61 1.430 4 0.060 0.060 1.432 81.429 40.714 LGA Y 62 Y 62 1.456 8 0.025 0.025 1.664 77.143 25.714 LGA L 63 L 63 1.696 4 0.026 0.026 1.747 72.857 36.429 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 55 220 220 100.00 431 220 51.04 63 SUMMARY(RMSD_GDC): 1.738 1.718 1.718 68.556 35.516 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 55 63 4.0 54 1.57 71.429 79.992 3.236 LGA_LOCAL RMSD: 1.569 Number of atoms: 54 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.749 Number of assigned atoms: 55 Std_ASGN_ATOMS RMSD: 1.738 Standard rmsd on all 55 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.945553 * X + 0.302853 * Y + -0.119203 * Z + 9.256224 Y_new = -0.303840 * X + 0.952668 * Y + 0.010250 * Z + -30.353029 Z_new = 0.116665 * X + 0.026526 * Y + 0.992817 * Z + 49.571915 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.310914 -0.116931 0.026712 [DEG: -17.8141 -6.6997 1.5305 ] ZXZ: -1.656576 0.119930 1.347226 [DEG: -94.9148 6.8715 77.1903 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0575AL396_1-D1 REMARK 2: T0575-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0575AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 55 63 4.0 54 1.57 79.992 1.74 REMARK ---------------------------------------------------------- MOLECULE T0575AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1pb6_A ATOM 1 N LEU 9 31.567 11.223 50.708 1.00 0.00 N ATOM 2 CA LEU 9 30.693 10.300 51.506 1.00 0.00 C ATOM 3 C LEU 9 29.224 10.730 51.574 1.00 0.00 C ATOM 4 O LEU 9 28.330 9.883 51.706 1.00 0.00 O ATOM 5 N PRO 10 28.986 12.041 51.596 1.00 0.00 N ATOM 6 CA PRO 10 27.622 12.562 51.612 1.00 0.00 C ATOM 7 C PRO 10 27.097 12.320 50.197 1.00 0.00 C ATOM 8 O PRO 10 25.952 11.914 50.002 1.00 0.00 O ATOM 9 N GLU 11 27.966 12.539 49.215 1.00 0.00 N ATOM 10 CA GLU 11 27.608 12.313 47.829 1.00 0.00 C ATOM 11 C GLU 11 27.392 10.821 47.666 1.00 0.00 C ATOM 12 O GLU 11 26.502 10.397 46.935 1.00 0.00 O ATOM 13 N GLU 12 28.212 10.029 48.347 1.00 0.00 N ATOM 14 CA GLU 12 28.108 8.586 48.251 1.00 0.00 C ATOM 15 C GLU 12 26.783 8.063 48.784 1.00 0.00 C ATOM 16 O GLU 12 26.330 6.997 48.383 1.00 0.00 O ATOM 17 N LYS 13 26.187 8.792 49.717 1.00 0.00 N ATOM 18 CA LYS 13 24.910 8.402 50.311 1.00 0.00 C ATOM 19 C LYS 13 23.729 8.867 49.475 1.00 0.00 C ATOM 20 O LYS 13 22.776 8.118 49.259 1.00 0.00 O ATOM 21 N ARG 14 23.754 10.134 49.074 1.00 0.00 N ATOM 22 CA ARG 14 22.676 10.678 48.275 1.00 0.00 C ATOM 23 C ARG 14 22.547 9.796 47.054 1.00 0.00 C ATOM 24 O ARG 14 21.450 9.621 46.526 1.00 0.00 O ATOM 25 N SER 15 23.671 9.222 46.633 1.00 0.00 N ATOM 26 CA SER 15 23.712 8.343 45.477 1.00 0.00 C ATOM 27 C SER 15 23.198 6.943 45.793 1.00 0.00 C ATOM 28 O SER 15 22.429 6.379 45.019 1.00 0.00 O ATOM 29 N ARG 16 23.632 6.376 46.916 1.00 0.00 N ATOM 30 CA ARG 16 23.187 5.041 47.322 1.00 0.00 C ATOM 31 C ARG 16 21.668 5.030 47.443 1.00 0.00 C ATOM 32 O ARG 16 21.006 4.120 46.969 1.00 0.00 O ATOM 33 N LEU 17 21.130 6.044 48.114 1.00 0.00 N ATOM 34 CA LEU 17 19.691 6.184 48.305 1.00 0.00 C ATOM 35 C LEU 17 18.925 6.306 46.969 1.00 0.00 C ATOM 36 O LEU 17 17.925 5.615 46.759 1.00 0.00 O ATOM 37 N ILE 18 19.353 7.220 46.099 1.00 0.00 N ATOM 38 CA ILE 18 18.695 7.397 44.806 1.00 0.00 C ATOM 39 C ILE 18 18.652 6.118 43.980 1.00 0.00 C ATOM 40 O ILE 18 17.639 5.811 43.366 1.00 0.00 O ATOM 41 N ASP 19 19.734 5.356 43.972 1.00 0.00 N ATOM 42 CA ASP 19 19.705 4.154 43.176 1.00 0.00 C ATOM 43 C ASP 19 18.878 3.110 43.873 1.00 0.00 C ATOM 44 O ASP 19 18.351 2.206 43.223 1.00 0.00 O ATOM 45 N VAL 20 18.754 3.237 45.190 1.00 0.00 N ATOM 46 CA VAL 20 17.952 2.296 45.970 1.00 0.00 C ATOM 47 C VAL 20 16.495 2.664 45.751 1.00 0.00 C ATOM 48 O VAL 20 15.609 1.806 45.768 1.00 0.00 O ATOM 49 N LEU 21 16.258 3.959 45.575 1.00 0.00 N ATOM 50 CA LEU 21 14.922 4.458 45.328 1.00 0.00 C ATOM 51 C LEU 21 14.464 3.926 43.984 1.00 0.00 C ATOM 52 O LEU 21 13.392 3.329 43.895 1.00 0.00 O ATOM 53 N LEU 22 15.296 4.130 42.956 1.00 0.00 N ATOM 54 CA LEU 22 15.006 3.695 41.592 1.00 0.00 C ATOM 55 C LEU 22 14.651 2.237 41.591 1.00 0.00 C ATOM 56 O LEU 22 13.558 1.861 41.163 1.00 0.00 O ATOM 57 N ASP 23 15.599 1.434 42.061 1.00 0.00 N ATOM 58 CA ASP 23 15.452 -0.010 42.134 1.00 0.00 C ATOM 59 C ASP 23 14.212 -0.456 42.886 1.00 0.00 C ATOM 60 O ASP 23 13.537 -1.380 42.455 1.00 0.00 O ATOM 61 N GLU 24 13.912 0.184 44.013 1.00 0.00 N ATOM 62 CA GLU 24 12.742 -0.212 44.788 1.00 0.00 C ATOM 63 C GLU 24 11.422 0.282 44.195 1.00 0.00 C ATOM 64 O GLU 24 10.439 -0.465 44.161 1.00 0.00 O ATOM 65 N PHE 25 11.380 1.529 43.743 1.00 0.00 N ATOM 66 CA PHE 25 10.154 2.062 43.150 1.00 0.00 C ATOM 67 C PHE 25 9.730 1.298 41.901 1.00 0.00 C ATOM 68 O PHE 25 8.551 1.002 41.716 1.00 0.00 O ATOM 69 N ALA 26 10.682 1.029 41.017 1.00 0.00 N ATOM 70 CA ALA 26 10.388 0.289 39.804 1.00 0.00 C ATOM 71 C ALA 26 10.054 -1.147 40.151 1.00 0.00 C ATOM 72 O ALA 26 9.582 -1.902 39.311 1.00 0.00 O ATOM 73 N GLN 27 10.267 -1.517 41.402 1.00 0.00 N ATOM 74 CA GLN 27 9.972 -2.864 41.834 1.00 0.00 C ATOM 75 C GLN 27 8.559 -2.982 42.385 1.00 0.00 C ATOM 76 O GLN 27 7.760 -3.786 41.907 1.00 0.00 O ATOM 77 N ASN 28 8.226 -2.139 43.352 1.00 0.00 N ATOM 78 CA ASN 28 6.920 -2.216 43.985 1.00 0.00 C ATOM 79 C ASN 28 5.974 -1.032 43.771 1.00 0.00 C ATOM 80 O ASN 28 4.848 -1.052 44.258 1.00 0.00 O ATOM 81 N ASP 29 6.398 -0.042 42.998 1.00 0.00 N ATOM 82 CA ASP 29 5.551 1.111 42.749 1.00 0.00 C ATOM 83 C ASP 29 5.565 2.090 43.906 1.00 0.00 C ATOM 84 O ASP 29 5.903 1.698 45.014 1.00 0.00 O ATOM 85 N TYR 30 5.192 3.347 43.663 1.00 0.00 N ATOM 86 CA TYR 30 5.198 4.363 44.707 1.00 0.00 C ATOM 87 C TYR 30 4.556 3.965 46.038 1.00 0.00 C ATOM 88 O TYR 30 5.146 4.161 47.095 1.00 0.00 O ATOM 89 N ASP 31 3.297 3.538 45.985 1.00 0.00 N ATOM 90 CA ASP 31 2.549 3.137 47.173 1.00 0.00 C ATOM 91 C ASP 31 2.970 1.769 47.657 1.00 0.00 C ATOM 92 O ASP 31 2.832 1.446 48.837 1.00 0.00 O ATOM 93 N SER 32 3.423 0.947 46.721 1.00 0.00 N ATOM 94 CA SER 32 3.874 -0.382 47.066 1.00 0.00 C ATOM 95 C SER 32 5.163 -0.373 47.869 1.00 0.00 C ATOM 96 O SER 32 5.413 -1.322 48.611 1.00 0.00 O ATOM 97 N VAL 33 5.974 0.677 47.745 1.00 0.00 N ATOM 98 CA VAL 33 7.235 0.732 48.474 1.00 0.00 C ATOM 99 C VAL 33 7.192 1.517 49.768 1.00 0.00 C ATOM 100 O VAL 33 6.454 2.487 49.905 1.00 0.00 O ATOM 101 N SER 34 8.016 1.083 50.713 1.00 0.00 N ATOM 102 CA SER 34 8.132 1.722 52.010 1.00 0.00 C ATOM 103 C SER 34 9.475 2.447 52.019 1.00 0.00 C ATOM 104 O SER 34 10.469 1.923 51.540 1.00 0.00 O ATOM 105 N ILE 35 9.495 3.666 52.537 1.00 0.00 N ATOM 106 CA ILE 35 10.711 4.454 52.596 1.00 0.00 C ATOM 107 C ILE 35 11.783 3.778 53.469 1.00 0.00 C ATOM 108 O ILE 35 12.903 4.265 53.581 1.00 0.00 O ATOM 109 N ASN 36 11.409 2.692 54.138 1.00 0.00 N ATOM 110 CA ASN 36 12.338 1.932 54.970 1.00 0.00 C ATOM 111 C ASN 36 13.145 0.974 54.106 1.00 0.00 C ATOM 112 O ASN 36 14.336 0.781 54.337 1.00 0.00 O ATOM 113 N ARG 37 12.473 0.346 53.141 1.00 0.00 N ATOM 114 CA ARG 37 13.109 -0.591 52.217 1.00 0.00 C ATOM 115 C ARG 37 14.196 0.097 51.393 1.00 0.00 C ATOM 116 O ARG 37 15.109 -0.556 50.896 1.00 0.00 O ATOM 117 N ILE 38 14.035 1.397 51.178 1.00 0.00 N ATOM 118 CA ILE 38 14.989 2.172 50.406 1.00 0.00 C ATOM 119 C ILE 38 16.190 2.433 51.289 1.00 0.00 C ATOM 120 O ILE 38 17.341 2.276 50.868 1.00 0.00 O ATOM 121 N THR 39 15.900 2.853 52.515 1.00 0.00 N ATOM 122 CA THR 39 16.915 3.151 53.512 1.00 0.00 C ATOM 123 C THR 39 17.778 1.923 53.796 1.00 0.00 C ATOM 124 O THR 39 19.004 2.019 53.873 1.00 0.00 O ATOM 125 N GLU 40 17.130 0.773 53.944 1.00 0.00 N ATOM 126 CA GLU 40 17.829 -0.472 54.205 1.00 0.00 C ATOM 127 C GLU 40 18.733 -0.814 53.031 1.00 0.00 C ATOM 128 O GLU 40 19.940 -0.988 53.192 1.00 0.00 O ATOM 129 N ARG 41 18.121 -0.947 51.859 1.00 0.00 N ATOM 130 CA ARG 41 18.825 -1.284 50.633 1.00 0.00 C ATOM 131 C ARG 41 20.010 -0.359 50.395 1.00 0.00 C ATOM 132 O ARG 41 21.073 -0.817 49.967 1.00 0.00 O ATOM 133 N ALA 42 19.817 0.933 50.661 1.00 0.00 N ATOM 134 CA ALA 42 20.866 1.925 50.484 1.00 0.00 C ATOM 135 C ALA 42 21.876 1.920 51.644 1.00 0.00 C ATOM 136 O ALA 42 22.864 2.670 51.626 1.00 0.00 O ATOM 137 N GLY 43 21.604 1.103 52.666 1.00 0.00 N ATOM 138 CA GLY 43 22.480 1.011 53.820 1.00 0.00 C ATOM 139 C GLY 43 22.480 2.211 54.762 1.00 0.00 C ATOM 140 O GLY 43 23.464 2.433 55.456 1.00 0.00 O ATOM 141 N ILE 44 21.414 3.006 54.770 1.00 0.00 N ATOM 142 CA ILE 44 21.306 4.168 55.669 1.00 0.00 C ATOM 143 C ILE 44 20.064 4.044 56.550 1.00 0.00 C ATOM 144 O ILE 44 19.266 3.126 56.388 1.00 0.00 O ATOM 145 N ALA 45 19.938 4.929 57.527 1.00 0.00 N ATOM 146 CA ALA 45 18.778 4.901 58.405 1.00 0.00 C ATOM 147 C ALA 45 17.666 5.746 57.794 1.00 0.00 C ATOM 148 O ALA 45 17.927 6.645 56.980 1.00 0.00 O ATOM 149 N LYS 46 16.429 5.457 58.190 1.00 0.00 N ATOM 150 CA LYS 46 15.274 6.195 57.689 1.00 0.00 C ATOM 151 C LYS 46 15.350 7.682 58.033 1.00 0.00 C ATOM 152 O LYS 46 14.871 8.517 57.267 1.00 0.00 O ATOM 153 N GLY 47 15.936 8.008 59.180 1.00 0.00 N ATOM 154 CA GLY 47 16.087 9.394 59.611 1.00 0.00 C ATOM 155 C GLY 47 17.180 10.086 58.798 1.00 0.00 C ATOM 156 O GLY 47 17.172 11.315 58.631 1.00 0.00 O ATOM 157 N SER 48 18.146 9.299 58.333 1.00 0.00 N ATOM 158 CA SER 48 19.247 9.823 57.540 1.00 0.00 C ATOM 159 C SER 48 18.737 10.046 56.119 1.00 0.00 C ATOM 160 O SER 48 19.026 11.072 55.496 1.00 0.00 O ATOM 161 N PHE 49 17.944 9.100 55.621 1.00 0.00 N ATOM 162 CA PHE 49 17.378 9.219 54.282 1.00 0.00 C ATOM 163 C PHE 49 16.591 10.521 54.199 1.00 0.00 C ATOM 164 O PHE 49 16.841 11.354 53.312 1.00 0.00 O ATOM 165 N TYR 50 15.635 10.662 55.127 1.00 0.00 N ATOM 166 CA TYR 50 14.750 11.828 55.219 1.00 0.00 C ATOM 167 C TYR 50 15.463 13.150 55.251 1.00 0.00 C ATOM 168 O TYR 50 14.843 14.188 55.054 1.00 0.00 O ATOM 169 N GLN 51 16.747 13.126 55.574 1.00 0.00 N ATOM 170 CA GLN 51 17.519 14.343 55.594 1.00 0.00 C ATOM 171 C GLN 51 17.861 14.717 54.186 1.00 0.00 C ATOM 172 O GLN 51 17.971 15.899 53.862 1.00 0.00 O ATOM 173 N TYR 52 18.086 13.704 53.360 1.00 0.00 N ATOM 174 CA TYR 52 18.415 13.925 51.965 1.00 0.00 C ATOM 175 C TYR 52 17.132 14.201 51.190 1.00 0.00 C ATOM 176 O TYR 52 17.061 15.152 50.404 1.00 0.00 O ATOM 177 N PHE 53 16.118 13.364 51.430 1.00 0.00 N ATOM 178 CA PHE 53 14.808 13.480 50.787 1.00 0.00 C ATOM 179 C PHE 53 13.696 13.413 51.845 1.00 0.00 C ATOM 180 O PHE 53 13.357 12.341 52.360 1.00 0.00 O ATOM 181 N ALA 54 13.110 14.580 52.164 1.00 0.00 N ATOM 182 CA ALA 54 12.045 14.860 53.128 1.00 0.00 C ATOM 183 C ALA 54 10.745 14.056 53.063 1.00 0.00 C ATOM 184 O ALA 54 9.957 14.078 54.018 1.00 0.00 O ATOM 185 N ASP 55 10.523 13.341 51.969 1.00 0.00 N ATOM 186 CA ASP 55 9.307 12.540 51.824 1.00 0.00 C ATOM 187 C ASP 55 9.468 11.508 50.727 1.00 0.00 C ATOM 188 O ASP 55 10.335 11.653 49.860 1.00 0.00 O ATOM 189 N LYS 56 8.677 10.436 50.791 1.00 0.00 N ATOM 190 CA LYS 56 8.740 9.395 49.767 1.00 0.00 C ATOM 191 C LYS 56 8.416 10.024 48.428 1.00 0.00 C ATOM 192 O LYS 56 8.897 9.566 47.391 1.00 0.00 O ATOM 193 N LYS 57 7.589 11.065 48.467 1.00 0.00 N ATOM 194 CA LYS 57 7.184 11.800 47.279 1.00 0.00 C ATOM 195 C LYS 57 8.307 12.689 46.727 1.00 0.00 C ATOM 196 O LYS 57 8.380 12.919 45.519 1.00 0.00 O ATOM 197 N ASP 58 9.142 13.235 47.610 1.00 0.00 N ATOM 198 CA ASP 58 10.266 14.084 47.197 1.00 0.00 C ATOM 199 C ASP 58 11.358 13.228 46.569 1.00 0.00 C ATOM 200 O ASP 58 12.017 13.640 45.599 1.00 0.00 O ATOM 201 N CYS 59 11.590 12.063 47.170 1.00 0.00 N ATOM 202 CA CYS 59 12.606 11.147 46.674 1.00 0.00 C ATOM 203 C CYS 59 12.175 10.598 45.306 1.00 0.00 C ATOM 204 O CYS 59 12.982 10.549 44.369 1.00 0.00 O ATOM 205 N TYR 60 10.899 10.221 45.206 1.00 0.00 N ATOM 206 CA TYR 60 10.319 9.666 43.980 1.00 0.00 C ATOM 207 C TYR 60 10.515 10.593 42.790 1.00 0.00 C ATOM 208 O TYR 60 10.999 10.185 41.727 1.00 0.00 O ATOM 209 N LEU 61 10.045 11.821 42.955 1.00 0.00 N ATOM 210 CA LEU 61 10.153 12.834 41.932 1.00 0.00 C ATOM 211 C LEU 61 11.625 13.073 41.610 1.00 0.00 C ATOM 212 O LEU 61 11.966 13.455 40.487 1.00 0.00 O ATOM 213 N TYR 62 12.499 12.801 42.579 1.00 0.00 N ATOM 214 CA TYR 62 13.948 12.966 42.402 1.00 0.00 C ATOM 215 C TYR 62 14.549 11.912 41.448 1.00 0.00 C ATOM 216 O TYR 62 15.392 12.242 40.620 1.00 0.00 O ATOM 217 N LEU 63 14.139 10.652 41.566 1.00 0.00 N ATOM 218 CA LEU 63 14.660 9.638 40.653 1.00 0.00 C ATOM 219 C LEU 63 14.153 9.924 39.227 1.00 0.00 C ATOM 220 O LEU 63 14.860 9.680 38.232 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 220 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 41.26 90.7 108 87.1 124 ARMSMC SECONDARY STRUCTURE . . 12.58 96.9 64 100.0 64 ARMSMC SURFACE . . . . . . . . 43.95 92.0 75 87.2 86 ARMSMC BURIED . . . . . . . . 34.38 87.9 33 86.8 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 50 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.74 (Number of atoms: 55) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.74 55 87.3 63 CRMSCA CRN = ALL/NP . . . . . 0.0316 CRMSCA SECONDARY STRUCTURE . . 1.47 32 100.0 32 CRMSCA SURFACE . . . . . . . . 1.68 38 86.4 44 CRMSCA BURIED . . . . . . . . 1.85 17 89.5 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.72 220 70.3 313 CRMSMC SECONDARY STRUCTURE . . 1.44 128 80.0 160 CRMSMC SURFACE . . . . . . . . 1.68 152 69.7 218 CRMSMC BURIED . . . . . . . . 1.81 68 71.6 95 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 247 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 221 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 124 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 165 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 82 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.72 220 44.1 499 CRMSALL SECONDARY STRUCTURE . . 1.44 128 50.8 252 CRMSALL SURFACE . . . . . . . . 1.68 152 44.6 341 CRMSALL BURIED . . . . . . . . 1.81 68 43.0 158 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.498 1.000 0.500 55 87.3 63 ERRCA SECONDARY STRUCTURE . . 1.326 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 1.503 1.000 0.500 38 86.4 44 ERRCA BURIED . . . . . . . . 1.488 1.000 0.500 17 89.5 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.467 1.000 0.500 220 70.3 313 ERRMC SECONDARY STRUCTURE . . 1.305 1.000 0.500 128 80.0 160 ERRMC SURFACE . . . . . . . . 1.478 1.000 0.500 152 69.7 218 ERRMC BURIED . . . . . . . . 1.442 1.000 0.500 68 71.6 95 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 247 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 221 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 124 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 165 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 82 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.467 1.000 0.500 220 44.1 499 ERRALL SECONDARY STRUCTURE . . 1.305 1.000 0.500 128 50.8 252 ERRALL SURFACE . . . . . . . . 1.478 1.000 0.500 152 44.6 341 ERRALL BURIED . . . . . . . . 1.442 1.000 0.500 68 43.0 158 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 15 44 52 54 55 55 63 DISTCA CA (P) 23.81 69.84 82.54 85.71 87.30 63 DISTCA CA (RMS) 0.81 1.19 1.47 1.58 1.74 DISTCA ALL (N) 67 178 208 216 220 220 499 DISTALL ALL (P) 13.43 35.67 41.68 43.29 44.09 499 DISTALL ALL (RMS) 0.78 1.18 1.44 1.55 1.72 DISTALL END of the results output