####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 102 ( 408), selected 102 , name T0575AL285_1-D2 # Molecule2: number of CA atoms 127 ( 1015), selected 102 , name T0575-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0575AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 102 64 - 179 3.72 3.72 LCS_AVERAGE: 80.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 54 125 - 178 1.92 4.03 LCS_AVERAGE: 29.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 128 - 151 0.98 5.32 LCS_AVERAGE: 12.91 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 102 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 64 I 64 11 23 102 11 12 21 42 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 65 Q 65 11 23 102 11 12 15 37 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 66 L 66 11 23 102 11 12 14 24 41 54 70 75 82 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT G 67 G 67 11 23 102 11 12 14 37 47 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT I 68 I 68 11 23 102 11 12 15 31 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT E 69 E 69 11 23 102 11 12 14 20 26 54 66 75 82 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 70 Q 70 11 23 102 11 12 14 20 26 38 64 74 79 87 91 95 96 99 100 102 102 102 102 102 LCS_GDT K 71 K 71 11 23 102 11 12 14 20 41 58 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT T 72 T 72 11 23 102 11 12 14 19 26 38 54 75 80 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 73 A 73 11 23 102 11 12 13 19 24 38 48 65 73 84 91 95 95 99 100 102 102 102 102 102 LCS_GDT F 74 F 74 11 23 102 11 12 13 19 26 38 50 66 78 85 91 95 96 99 100 102 102 102 102 102 LCS_GDT D 85 D 85 16 23 102 10 15 21 35 45 62 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT M 86 M 86 16 23 102 10 15 21 35 45 58 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 87 F 87 16 23 102 10 15 19 35 45 56 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 88 A 88 16 23 102 10 15 21 35 48 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Y 89 Y 89 16 23 102 11 15 21 37 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 90 L 90 16 23 102 11 15 21 35 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT R 91 R 91 16 23 102 11 15 21 35 48 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT W 92 W 92 16 23 102 11 15 21 35 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 93 L 93 16 23 102 11 15 33 42 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 94 L 94 16 23 102 11 15 21 40 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT D 95 D 95 16 23 102 11 15 21 35 48 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 96 V 96 16 23 102 11 15 21 35 48 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT G 97 G 97 16 17 102 11 15 21 36 48 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT I 98 I 98 16 17 102 11 15 21 35 44 55 65 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 99 Q 99 16 17 102 11 15 21 35 45 55 65 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 100 F 100 16 17 102 3 15 20 36 43 51 64 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT P 105 P 105 11 17 102 6 10 11 11 11 12 17 27 59 76 86 92 95 96 100 102 102 102 102 102 LCS_GDT R 106 R 106 11 13 102 9 10 11 11 18 32 40 66 74 80 89 95 95 99 100 102 102 102 102 102 LCS_GDT L 107 L 107 11 13 102 9 10 13 20 28 46 57 75 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 108 A 108 11 13 102 9 11 11 13 21 28 38 66 78 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 109 Q 109 11 13 102 9 10 18 22 31 46 65 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT I 110 I 110 11 13 102 9 10 14 32 45 57 67 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 111 A 111 11 13 102 9 10 11 11 16 49 59 75 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Y 112 Y 112 11 13 102 9 10 11 11 11 16 56 67 80 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT K 113 K 113 11 13 102 9 10 11 11 16 52 64 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 114 A 114 11 13 102 9 10 11 11 11 12 13 17 27 45 80 91 96 99 100 102 102 102 102 102 LCS_GDT L 115 L 115 11 13 102 3 8 11 11 11 14 18 27 34 57 82 91 96 99 100 102 102 102 102 102 LCS_GDT Y 116 Y 116 4 13 102 3 3 9 10 11 14 18 27 31 43 62 85 95 98 100 102 102 102 102 102 LCS_GDT D 117 D 117 4 13 102 3 3 4 7 10 14 18 29 46 75 86 91 96 99 100 102 102 102 102 102 LCS_GDT D 118 D 118 4 5 102 3 4 4 16 34 38 47 59 74 85 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 119 V 119 4 5 102 3 4 4 5 11 52 70 74 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT P 120 P 120 4 5 102 3 27 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 121 L 121 4 5 102 3 4 36 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT P 122 P 122 10 17 102 8 9 21 35 43 49 56 66 79 85 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 123 A 123 10 17 102 8 9 10 20 25 35 41 55 61 68 75 86 93 98 100 102 102 102 102 102 LCS_GDT E 124 E 124 10 30 102 8 9 16 18 23 37 51 63 69 82 90 95 96 99 100 102 102 102 102 102 LCS_GDT T 125 T 125 10 54 102 8 16 34 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT M 126 M 126 10 54 102 8 9 10 19 43 51 65 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 127 Q 127 10 54 102 8 9 17 35 43 51 64 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 128 V 128 24 54 102 8 9 30 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT I 129 I 129 24 54 102 8 9 16 38 49 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT R 130 R 130 24 54 102 6 9 21 31 45 55 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT H 131 H 131 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT G 132 G 132 24 54 102 7 25 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT S 133 S 133 24 54 102 16 28 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 134 F 134 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 135 A 135 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Y 136 Y 136 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 137 F 137 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT K 138 K 138 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 139 Q 139 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 140 L 140 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 141 V 141 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT E 142 E 142 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT Q 143 Q 143 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT G 144 G 144 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT I 145 I 145 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 146 A 146 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT D 147 D 147 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT G 148 G 148 24 54 102 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT S 149 S 149 24 54 102 16 29 37 44 50 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 150 L 150 24 54 102 16 25 37 44 50 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 151 V 151 24 54 102 6 23 26 44 50 60 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT P 152 P 152 23 54 102 4 5 7 13 20 35 46 58 70 80 86 93 95 99 100 102 102 102 102 102 LCS_GDT D 153 D 153 23 54 102 4 15 28 41 50 57 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 154 L 154 20 54 102 4 5 19 42 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT D 155 D 155 20 54 102 13 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 156 A 156 20 54 102 15 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT D 157 D 157 20 54 102 11 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT T 158 T 158 20 54 102 13 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 159 A 159 20 54 102 13 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 160 A 160 20 54 102 14 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 161 F 161 20 54 102 15 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 162 V 162 20 54 102 13 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 163 L 163 20 54 102 13 22 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT N 164 N 164 20 54 102 13 22 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 165 V 165 20 54 102 13 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT V 166 V 166 20 54 102 13 18 34 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 167 F 167 20 54 102 13 16 30 42 50 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT T 168 T 168 20 54 102 13 16 32 43 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT E 169 E 169 20 54 102 8 16 32 43 50 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 170 L 170 20 54 102 11 20 34 43 50 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT G 171 G 171 20 54 102 9 11 36 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT N 172 N 172 20 54 102 9 11 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT H 173 H 173 20 54 102 9 23 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT L 174 L 174 13 54 102 11 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT I 175 I 175 13 54 102 9 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT E 176 E 176 13 54 102 11 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT R 177 R 177 13 54 102 9 24 36 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT F 178 F 178 13 54 102 9 24 35 41 50 60 70 74 83 88 91 95 96 99 100 102 102 102 102 102 LCS_GDT A 179 A 179 3 52 102 3 4 10 17 39 54 66 76 83 88 91 95 96 99 100 102 102 102 102 102 LCS_AVERAGE LCS_A: 40.91 ( 12.91 29.50 80.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 29 37 44 51 63 70 76 83 88 91 95 96 99 100 102 102 102 102 102 GDT PERCENT_AT 12.60 22.83 29.13 34.65 40.16 49.61 55.12 59.84 65.35 69.29 71.65 74.80 75.59 77.95 78.74 80.31 80.31 80.31 80.31 80.31 GDT RMS_LOCAL 0.23 0.72 0.94 1.17 1.64 1.97 2.19 2.44 2.66 2.84 3.01 3.23 3.36 3.50 3.58 3.72 3.72 3.72 3.72 3.72 GDT RMS_ALL_AT 4.95 4.09 4.06 4.07 3.88 3.83 3.88 3.77 3.77 3.77 3.78 3.74 3.73 3.72 3.72 3.72 3.72 3.72 3.72 3.72 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 64 I 64 2.507 4 0.069 0.069 3.022 55.357 27.679 LGA Q 65 Q 65 3.189 5 0.067 0.067 4.154 46.905 20.847 LGA L 66 L 66 5.009 4 0.028 0.028 5.009 30.238 15.119 LGA G 67 G 67 3.698 0 0.044 0.044 4.028 43.452 43.452 LGA I 68 I 68 3.038 4 0.053 0.053 4.096 45.119 22.560 LGA E 69 E 69 5.159 5 0.017 0.017 6.245 25.476 11.323 LGA Q 70 Q 70 6.069 5 0.012 0.012 6.298 19.286 8.571 LGA K 71 K 71 4.425 5 0.051 0.051 4.923 32.857 14.603 LGA T 72 T 72 5.559 3 0.038 0.038 6.689 19.524 11.156 LGA A 73 A 73 7.375 1 0.051 0.051 8.103 9.524 7.619 LGA F 74 F 74 6.773 7 0.020 0.020 7.030 12.500 4.545 LGA D 85 D 85 3.250 4 0.081 0.081 3.507 50.119 25.060 LGA M 86 M 86 3.431 4 0.052 0.052 3.546 48.333 24.167 LGA F 87 F 87 3.694 7 0.063 0.063 3.694 43.333 15.758 LGA A 88 A 88 3.155 1 0.037 0.037 3.345 51.786 41.429 LGA Y 89 Y 89 2.719 8 0.044 0.044 2.981 59.048 19.683 LGA L 90 L 90 2.596 4 0.024 0.024 2.630 59.048 29.524 LGA R 91 R 91 3.020 7 0.034 0.034 3.020 55.357 20.130 LGA W 92 W 92 2.389 10 0.054 0.054 2.640 66.905 19.116 LGA L 93 L 93 1.068 4 0.089 0.089 1.538 79.286 39.643 LGA L 94 L 94 1.769 4 0.053 0.053 2.395 68.810 34.405 LGA D 95 D 95 3.124 4 0.052 0.052 3.541 50.119 25.060 LGA V 96 V 96 2.455 3 0.058 0.058 2.871 60.952 34.830 LGA G 97 G 97 2.765 0 0.078 0.078 3.660 53.810 53.810 LGA I 98 I 98 3.957 4 0.087 0.087 5.056 39.167 19.583 LGA Q 99 Q 99 4.074 5 0.079 0.079 4.986 37.262 16.561 LGA F 100 F 100 4.547 7 0.590 0.590 6.512 28.333 10.303 LGA P 105 P 105 7.698 3 0.041 0.041 7.698 11.190 6.395 LGA R 106 R 106 6.157 7 0.023 0.023 6.745 22.024 8.009 LGA L 107 L 107 4.223 4 0.029 0.029 4.998 37.262 18.631 LGA A 108 A 108 5.174 1 0.051 0.051 5.174 30.119 24.095 LGA Q 109 Q 109 3.879 5 0.047 0.047 4.275 45.119 20.053 LGA I 110 I 110 3.733 4 0.109 0.109 4.548 42.024 21.012 LGA A 111 A 111 4.594 1 0.010 0.010 6.074 30.833 24.667 LGA Y 112 Y 112 4.828 8 0.038 0.038 5.597 30.357 10.119 LGA K 113 K 113 4.372 5 0.089 0.089 6.344 29.762 13.228 LGA A 114 A 114 7.663 1 0.236 0.236 8.634 8.571 6.857 LGA L 115 L 115 7.942 4 0.028 0.028 9.388 5.357 2.679 LGA Y 116 Y 116 8.852 8 0.091 0.091 9.241 2.976 0.992 LGA D 117 D 117 7.837 4 0.663 0.663 8.865 6.071 3.036 LGA D 118 D 118 6.379 4 0.205 0.205 6.379 28.929 14.464 LGA V 119 V 119 4.489 3 0.032 0.032 5.415 44.405 25.374 LGA P 120 P 120 1.261 3 0.560 0.560 3.189 71.429 40.816 LGA L 121 L 121 2.055 4 0.601 0.601 3.046 63.095 31.548 LGA P 122 P 122 6.089 3 0.590 0.590 6.553 23.810 13.605 LGA A 123 A 123 8.484 1 0.026 0.026 8.484 8.810 7.048 LGA E 124 E 124 6.488 5 0.054 0.054 7.105 23.929 10.635 LGA T 125 T 125 1.843 3 0.024 0.024 3.548 69.881 39.932 LGA M 126 M 126 4.257 4 0.019 0.019 4.257 45.119 22.560 LGA Q 127 Q 127 4.531 5 0.056 0.056 4.531 43.929 19.524 LGA V 128 V 128 2.619 3 0.030 0.030 2.619 62.976 35.986 LGA I 129 I 129 2.786 4 0.026 0.026 4.136 56.429 28.214 LGA R 130 R 130 3.388 7 0.152 0.152 3.744 51.905 18.874 LGA H 131 H 131 0.666 6 0.178 0.178 1.154 90.595 36.238 LGA G 132 G 132 1.550 0 0.083 0.083 1.550 79.286 79.286 LGA S 133 S 133 1.600 2 0.060 0.060 1.600 77.143 51.429 LGA F 134 F 134 1.108 7 0.041 0.041 1.169 85.952 31.255 LGA A 135 A 135 0.342 1 0.018 0.018 0.594 97.619 78.095 LGA Y 136 Y 136 0.968 8 0.019 0.019 0.968 90.476 30.159 LGA F 137 F 137 1.204 7 0.035 0.035 1.204 81.429 29.610 LGA K 138 K 138 0.866 5 0.052 0.052 0.985 90.476 40.212 LGA Q 139 Q 139 0.271 5 0.028 0.028 0.399 100.000 44.444 LGA L 140 L 140 0.806 4 0.024 0.024 0.806 90.476 45.238 LGA V 141 V 141 1.159 3 0.081 0.081 1.159 83.690 47.823 LGA E 142 E 142 0.982 5 0.082 0.082 1.377 85.952 38.201 LGA Q 143 Q 143 0.421 5 0.008 0.008 0.742 95.238 42.328 LGA G 144 G 144 1.109 0 0.039 0.039 1.369 83.690 83.690 LGA I 145 I 145 1.507 4 0.054 0.054 1.507 79.286 39.643 LGA A 146 A 146 1.144 1 0.050 0.050 1.542 79.286 63.429 LGA D 147 D 147 1.137 4 0.092 0.092 1.279 81.429 40.714 LGA G 148 G 148 2.224 0 0.028 0.028 2.802 64.881 64.881 LGA S 149 S 149 2.390 2 0.058 0.058 3.136 59.167 39.444 LGA L 150 L 150 2.473 4 0.201 0.201 2.624 60.952 30.476 LGA V 151 V 151 3.104 3 0.646 0.646 3.657 48.452 27.687 LGA P 152 P 152 6.773 3 0.671 0.671 6.773 19.405 11.088 LGA D 153 D 153 3.726 4 0.048 0.048 4.673 49.167 24.583 LGA L 154 L 154 2.887 4 0.060 0.060 3.256 55.476 27.738 LGA D 155 D 155 1.235 4 0.085 0.085 1.500 81.429 40.714 LGA A 156 A 156 1.364 1 0.074 0.074 1.364 81.429 65.143 LGA D 157 D 157 1.427 4 0.095 0.095 1.427 81.429 40.714 LGA T 158 T 158 1.447 3 0.028 0.028 1.447 81.429 46.531 LGA A 159 A 159 1.173 1 0.024 0.024 1.275 81.429 65.143 LGA A 160 A 160 1.326 1 0.037 0.037 1.326 81.429 65.143 LGA F 161 F 161 1.479 7 0.035 0.035 1.479 81.429 29.610 LGA V 162 V 162 1.195 3 0.055 0.055 1.328 81.429 46.531 LGA L 163 L 163 1.466 4 0.028 0.028 1.769 79.286 39.643 LGA N 164 N 164 1.440 4 0.047 0.047 1.440 81.429 40.714 LGA V 165 V 165 0.715 3 0.060 0.060 1.166 85.952 49.116 LGA V 166 V 166 2.060 3 0.075 0.075 2.575 64.881 37.075 LGA F 167 F 167 2.765 7 0.050 0.050 3.387 57.262 20.823 LGA T 168 T 168 2.270 3 0.027 0.027 2.744 62.857 35.918 LGA E 169 E 169 2.410 5 0.122 0.122 2.501 62.857 27.937 LGA L 170 L 170 2.390 4 0.042 0.042 2.688 66.905 33.452 LGA G 171 G 171 1.906 0 0.037 0.037 2.039 68.810 68.810 LGA N 172 N 172 1.969 4 0.047 0.047 1.969 72.857 36.429 LGA H 173 H 173 2.113 6 0.011 0.011 2.470 66.786 26.714 LGA L 174 L 174 2.259 4 0.060 0.060 2.885 60.952 30.476 LGA I 175 I 175 2.738 4 0.063 0.063 3.305 57.262 28.631 LGA E 176 E 176 2.566 5 0.033 0.033 3.247 57.262 25.450 LGA R 177 R 177 3.148 7 0.108 0.108 3.638 50.119 18.225 LGA F 178 F 178 4.131 7 0.268 0.268 4.131 50.595 18.398 LGA A 179 A 179 4.112 1 0.223 0.223 6.679 34.167 27.333 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 102 408 408 100.00 803 408 50.81 127 SUMMARY(RMSD_GDC): 3.722 3.680 3.680 44.483 24.388 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 102 127 4.0 76 2.44 49.409 47.029 2.995 LGA_LOCAL RMSD: 2.437 Number of atoms: 76 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.773 Number of assigned atoms: 102 Std_ASGN_ATOMS RMSD: 3.722 Standard rmsd on all 102 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.793246 * X + 0.220941 * Y + 0.567403 * Z + -52.321831 Y_new = -0.550823 * X + 0.657551 * Y + 0.514024 * Z + -6.650506 Z_new = -0.259527 * X + -0.720286 * Y + 0.643299 * Z + 73.475304 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.606952 0.262533 -0.841797 [DEG: -34.7758 15.0420 -48.2314 ] ZXZ: 2.306875 0.871997 -2.795761 [DEG: 132.1742 49.9617 -160.1853 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0575AL285_1-D2 REMARK 2: T0575-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0575AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 102 127 4.0 76 2.44 47.029 3.72 REMARK ---------------------------------------------------------- MOLECULE T0575AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3knwA ATOM 217 N ILE 64 12.292 13.859 37.190 1.00 0.00 N ATOM 218 CA ILE 64 11.427 13.639 36.047 1.00 0.00 C ATOM 219 C ILE 64 11.412 14.850 35.158 1.00 0.00 C ATOM 220 O ILE 64 11.309 14.717 33.956 1.00 0.00 O ATOM 221 N GLN 65 11.468 16.028 35.764 1.00 0.00 N ATOM 222 CA GLN 65 11.443 17.273 35.010 1.00 0.00 C ATOM 223 C GLN 65 12.691 17.338 34.140 1.00 0.00 C ATOM 224 O GLN 65 12.607 17.707 32.962 1.00 0.00 O ATOM 225 N LEU 66 13.833 16.982 34.736 1.00 0.00 N ATOM 226 CA LEU 66 15.127 17.043 34.062 1.00 0.00 C ATOM 227 C LEU 66 15.177 16.034 32.949 1.00 0.00 C ATOM 228 O LEU 66 15.745 16.305 31.891 1.00 0.00 O ATOM 229 N GLY 67 14.574 14.882 33.191 1.00 0.00 N ATOM 230 CA GLY 67 14.426 13.874 32.156 1.00 0.00 C ATOM 231 C GLY 67 13.617 14.395 30.949 1.00 0.00 C ATOM 232 O GLY 67 14.047 14.275 29.813 1.00 0.00 O ATOM 233 N ILE 68 12.459 14.987 31.212 1.00 0.00 N ATOM 234 CA ILE 68 11.573 15.470 30.172 1.00 0.00 C ATOM 235 C ILE 68 12.280 16.597 29.419 1.00 0.00 C ATOM 236 O ILE 68 12.223 16.640 28.197 1.00 0.00 O ATOM 237 N GLU 69 12.970 17.477 30.156 1.00 0.00 N ATOM 238 CA GLU 69 13.610 18.681 29.572 1.00 0.00 C ATOM 239 C GLU 69 14.713 18.355 28.573 1.00 0.00 C ATOM 240 O GLU 69 14.831 18.994 27.515 1.00 0.00 O ATOM 241 N GLN 70 15.537 17.386 28.948 1.00 0.00 N ATOM 242 CA GLN 70 16.539 16.833 28.066 1.00 0.00 C ATOM 243 C GLN 70 15.898 16.068 26.887 1.00 0.00 C ATOM 244 O GLN 70 16.368 16.208 25.741 1.00 0.00 O ATOM 245 N LYS 71 14.844 15.279 27.145 1.00 0.00 N ATOM 246 CA LYS 71 14.151 14.545 26.076 1.00 0.00 C ATOM 247 C LYS 71 13.738 15.507 24.960 1.00 0.00 C ATOM 248 O LYS 71 14.032 15.267 23.783 1.00 0.00 O ATOM 249 N THR 72 13.112 16.627 25.314 1.00 0.00 N ATOM 250 CA THR 72 12.641 17.537 24.282 1.00 0.00 C ATOM 251 C THR 72 13.786 18.266 23.531 1.00 0.00 C ATOM 252 O THR 72 13.690 18.478 22.315 1.00 0.00 O ATOM 253 N ALA 73 14.848 18.630 24.236 1.00 0.00 N ATOM 254 CA ALA 73 16.046 19.118 23.590 1.00 0.00 C ATOM 255 C ALA 73 16.571 18.064 22.607 1.00 0.00 C ATOM 256 O ALA 73 16.966 18.419 21.494 1.00 0.00 O ATOM 257 N PHE 74 16.575 16.784 23.003 1.00 0.00 N ATOM 258 CA PHE 74 17.033 15.703 22.111 1.00 0.00 C ATOM 259 C PHE 74 16.092 15.548 20.918 1.00 0.00 C ATOM 260 O PHE 74 16.549 15.310 19.825 1.00 0.00 O ATOM 297 N ASP 85 12.211 14.871 5.392 1.00 0.00 N ATOM 298 CA ASP 85 10.804 14.547 5.532 1.00 0.00 C ATOM 299 C ASP 85 10.285 14.545 6.973 1.00 0.00 C ATOM 300 O ASP 85 11.040 14.326 7.902 1.00 0.00 O ATOM 301 N MET 86 8.973 14.750 7.119 1.00 0.00 N ATOM 302 CA MET 86 8.284 14.457 8.364 1.00 0.00 C ATOM 303 C MET 86 8.411 12.944 8.592 1.00 0.00 C ATOM 304 O MET 86 8.719 12.502 9.698 1.00 0.00 O ATOM 305 N PHE 87 8.198 12.170 7.534 1.00 0.00 N ATOM 306 CA PHE 87 8.228 10.736 7.632 1.00 0.00 C ATOM 307 C PHE 87 9.561 10.194 8.133 1.00 0.00 C ATOM 308 O PHE 87 9.611 9.365 9.073 1.00 0.00 O ATOM 309 N ALA 88 10.634 10.657 7.517 1.00 0.00 N ATOM 310 CA ALA 88 11.956 10.229 7.898 1.00 0.00 C ATOM 311 C ALA 88 12.271 10.761 9.263 1.00 0.00 C ATOM 312 O ALA 88 12.994 10.117 10.005 1.00 0.00 O ATOM 313 N TYR 89 11.757 11.921 9.629 1.00 0.00 N ATOM 314 CA TYR 89 12.052 12.401 10.979 1.00 0.00 C ATOM 315 C TYR 89 11.464 11.456 12.032 1.00 0.00 C ATOM 316 O TYR 89 12.052 11.236 13.109 1.00 0.00 O ATOM 317 N LEU 90 10.292 10.907 11.691 1.00 0.00 N ATOM 318 CA LEU 90 9.505 10.069 12.578 1.00 0.00 C ATOM 319 C LEU 90 10.107 8.663 12.611 1.00 0.00 C ATOM 320 O LEU 90 10.119 8.009 13.647 1.00 0.00 O ATOM 321 N ARG 91 10.636 8.210 11.490 1.00 0.00 N ATOM 322 CA ARG 91 11.282 6.880 11.451 1.00 0.00 C ATOM 323 C ARG 91 12.607 6.966 12.152 1.00 0.00 C ATOM 324 O ARG 91 13.010 6.063 12.826 1.00 0.00 O ATOM 325 N TRP 92 13.250 8.098 12.061 1.00 0.00 N ATOM 326 CA TRP 92 14.451 8.337 12.833 1.00 0.00 C ATOM 327 C TRP 92 14.300 8.169 14.344 1.00 0.00 C ATOM 328 O TRP 92 14.983 7.355 14.958 1.00 0.00 O ATOM 329 N LEU 93 13.440 9.006 14.917 1.00 0.00 N ATOM 330 CA LEU 93 13.047 8.925 16.318 1.00 0.00 C ATOM 331 C LEU 93 12.748 7.501 16.774 1.00 0.00 C ATOM 332 O LEU 93 13.298 7.031 17.751 1.00 0.00 O ATOM 333 N LEU 94 11.875 6.840 16.059 1.00 0.00 N ATOM 334 CA LEU 94 11.480 5.505 16.407 1.00 0.00 C ATOM 335 C LEU 94 12.662 4.544 16.351 1.00 0.00 C ATOM 336 O LEU 94 12.779 3.599 17.170 1.00 0.00 O ATOM 337 N ASP 95 13.513 4.752 15.342 1.00 0.00 N ATOM 338 CA ASP 95 14.635 3.874 15.135 1.00 0.00 C ATOM 339 C ASP 95 15.588 4.000 16.314 1.00 0.00 C ATOM 340 O ASP 95 16.190 3.000 16.719 1.00 0.00 O ATOM 341 N VAL 96 15.669 5.225 16.857 1.00 0.00 N ATOM 342 CA VAL 96 16.368 5.539 18.089 1.00 0.00 C ATOM 343 C VAL 96 15.733 4.852 19.313 1.00 0.00 C ATOM 344 O VAL 96 16.470 4.369 20.188 1.00 0.00 O ATOM 345 N GLY 97 14.411 4.860 19.417 1.00 0.00 N ATOM 346 CA GLY 97 13.720 4.057 20.417 1.00 0.00 C ATOM 347 C GLY 97 14.349 2.680 20.445 1.00 0.00 C ATOM 348 O GLY 97 14.771 2.222 21.476 1.00 0.00 O ATOM 349 N ILE 98 14.403 2.044 19.278 1.00 0.00 N ATOM 350 CA ILE 98 14.884 0.688 19.106 1.00 0.00 C ATOM 351 C ILE 98 16.375 0.465 19.451 1.00 0.00 C ATOM 352 O ILE 98 16.713 -0.638 19.831 1.00 0.00 O ATOM 353 N GLN 99 17.252 1.477 19.345 1.00 0.00 N ATOM 354 CA GLN 99 18.708 1.315 19.628 1.00 0.00 C ATOM 355 C GLN 99 19.130 1.186 21.131 1.00 0.00 C ATOM 356 O GLN 99 20.121 0.503 21.422 1.00 0.00 O ATOM 357 N PHE 100 18.420 1.823 22.072 1.00 0.00 N ATOM 358 CA PHE 100 18.715 1.703 23.551 1.00 0.00 C ATOM 359 C PHE 100 20.039 2.344 24.058 1.00 0.00 C ATOM 360 O PHE 100 21.151 2.034 23.599 1.00 0.00 O ATOM 361 N PRO 105 11.911 3.874 27.728 1.00 0.00 N ATOM 362 CA PRO 105 10.670 3.120 27.801 1.00 0.00 C ATOM 363 C PRO 105 10.577 2.344 29.110 1.00 0.00 C ATOM 364 O PRO 105 9.472 2.122 29.609 1.00 0.00 O ATOM 365 N ARG 106 11.728 1.913 29.640 1.00 0.00 N ATOM 366 CA ARG 106 11.800 1.292 30.976 1.00 0.00 C ATOM 367 C ARG 106 11.235 2.239 32.045 1.00 0.00 C ATOM 368 O ARG 106 10.480 1.817 32.911 1.00 0.00 O ATOM 369 N LEU 107 11.577 3.524 31.969 1.00 0.00 N ATOM 370 CA LEU 107 11.070 4.483 32.949 1.00 0.00 C ATOM 371 C LEU 107 9.560 4.498 32.958 1.00 0.00 C ATOM 372 O LEU 107 8.997 4.553 34.021 1.00 0.00 O ATOM 373 N ALA 108 8.886 4.443 31.814 1.00 0.00 N ATOM 374 CA ALA 108 7.416 4.434 31.848 1.00 0.00 C ATOM 375 C ALA 108 6.887 3.104 32.350 1.00 0.00 C ATOM 376 O ALA 108 5.835 3.071 32.970 1.00 0.00 O ATOM 377 N GLN 109 7.606 2.022 32.084 1.00 0.00 N ATOM 378 CA GLN 109 7.189 0.694 32.505 1.00 0.00 C ATOM 379 C GLN 109 7.352 0.570 34.001 1.00 0.00 C ATOM 380 O GLN 109 6.436 0.119 34.719 1.00 0.00 O ATOM 381 N ILE 110 8.552 0.935 34.465 1.00 0.00 N ATOM 382 CA ILE 110 8.825 1.029 35.902 1.00 0.00 C ATOM 383 C ILE 110 7.765 1.883 36.562 1.00 0.00 C ATOM 384 O ILE 110 6.985 1.392 37.351 1.00 0.00 O ATOM 385 N ALA 111 7.656 3.144 36.190 1.00 0.00 N ATOM 386 CA ALA 111 6.772 4.042 36.937 1.00 0.00 C ATOM 387 C ALA 111 5.303 3.618 36.861 1.00 0.00 C ATOM 388 O ALA 111 4.566 3.776 37.849 1.00 0.00 O ATOM 389 N TYR 112 4.864 3.086 35.711 1.00 0.00 N ATOM 390 CA TYR 112 3.490 2.528 35.571 1.00 0.00 C ATOM 391 C TYR 112 3.285 1.413 36.602 1.00 0.00 C ATOM 392 O TYR 112 2.287 1.372 37.315 1.00 0.00 O ATOM 393 N LYS 113 4.272 0.523 36.675 1.00 0.00 N ATOM 394 CA LYS 113 4.307 -0.565 37.632 1.00 0.00 C ATOM 395 C LYS 113 4.011 -0.118 39.058 1.00 0.00 C ATOM 396 O LYS 113 3.164 -0.721 39.739 1.00 0.00 O ATOM 397 N ALA 114 4.704 0.931 39.509 1.00 0.00 N ATOM 398 CA ALA 114 4.576 1.385 40.869 1.00 0.00 C ATOM 399 C ALA 114 3.657 2.579 40.991 1.00 0.00 C ATOM 400 O ALA 114 3.756 3.349 41.943 1.00 0.00 O ATOM 401 N LEU 115 2.774 2.761 40.031 1.00 0.00 N ATOM 402 CA LEU 115 1.945 3.957 40.026 1.00 0.00 C ATOM 403 C LEU 115 1.078 4.134 41.262 1.00 0.00 C ATOM 404 O LEU 115 0.780 5.245 41.642 1.00 0.00 O ATOM 405 N TYR 116 0.676 3.043 41.893 1.00 0.00 N ATOM 406 CA TYR 116 -0.137 3.122 43.098 1.00 0.00 C ATOM 407 C TYR 116 0.533 3.896 44.259 1.00 0.00 C ATOM 408 O TYR 116 -0.169 4.406 45.138 1.00 0.00 O ATOM 409 N ASP 117 1.863 4.000 44.263 1.00 0.00 N ATOM 410 CA ASP 117 2.562 4.637 45.382 1.00 0.00 C ATOM 411 C ASP 117 3.221 5.962 45.045 1.00 0.00 C ATOM 412 O ASP 117 3.720 6.664 45.903 1.00 0.00 O ATOM 413 N ASP 118 3.181 6.320 43.788 1.00 0.00 N ATOM 414 CA ASP 118 3.688 7.578 43.311 1.00 0.00 C ATOM 415 C ASP 118 2.878 8.759 43.833 1.00 0.00 C ATOM 416 O ASP 118 1.672 8.712 43.909 1.00 0.00 O ATOM 417 N VAL 119 3.551 9.813 44.255 1.00 0.00 N ATOM 418 CA VAL 119 2.879 11.078 44.557 1.00 0.00 C ATOM 419 C VAL 119 2.083 11.504 43.334 1.00 0.00 C ATOM 420 O VAL 119 2.517 11.266 42.211 1.00 0.00 O ATOM 421 N PRO 120 0.926 12.124 43.543 1.00 0.00 N ATOM 422 CA PRO 120 0.214 12.825 42.471 1.00 0.00 C ATOM 423 C PRO 120 1.084 13.795 41.689 1.00 0.00 C ATOM 424 O PRO 120 0.914 13.939 40.465 1.00 0.00 O ATOM 425 N LEU 121 1.966 14.508 42.387 1.00 0.00 N ATOM 426 CA LEU 121 2.786 15.520 41.721 1.00 0.00 C ATOM 427 C LEU 121 3.660 14.885 40.611 1.00 0.00 C ATOM 428 O LEU 121 3.731 15.385 39.480 1.00 0.00 O ATOM 429 N PRO 122 4.301 13.778 40.949 1.00 0.00 N ATOM 430 CA PRO 122 5.165 13.086 40.034 1.00 0.00 C ATOM 431 C PRO 122 4.354 12.446 38.904 1.00 0.00 C ATOM 432 O PRO 122 4.724 12.517 37.731 1.00 0.00 O ATOM 433 N ALA 123 3.215 11.865 39.247 1.00 0.00 N ATOM 434 CA ALA 123 2.363 11.263 38.249 1.00 0.00 C ATOM 435 C ALA 123 1.855 12.276 37.223 1.00 0.00 C ATOM 436 O ALA 123 1.849 12.001 36.037 1.00 0.00 O ATOM 437 N GLU 124 1.396 13.411 37.701 1.00 0.00 N ATOM 438 CA GLU 124 1.028 14.553 36.833 1.00 0.00 C ATOM 439 C GLU 124 2.160 15.032 35.913 1.00 0.00 C ATOM 440 O GLU 124 1.947 15.181 34.720 1.00 0.00 O ATOM 441 N THR 125 3.356 15.241 36.457 1.00 0.00 N ATOM 442 CA THR 125 4.493 15.622 35.629 1.00 0.00 C ATOM 443 C THR 125 4.751 14.589 34.535 1.00 0.00 C ATOM 444 O THR 125 4.924 14.946 33.367 1.00 0.00 O ATOM 445 N MET 126 4.714 13.315 34.902 1.00 0.00 N ATOM 446 CA MET 126 4.964 12.242 33.934 1.00 0.00 C ATOM 447 C MET 126 3.879 12.157 32.865 1.00 0.00 C ATOM 448 O MET 126 4.157 12.078 31.677 1.00 0.00 O ATOM 449 N GLN 127 2.642 12.138 33.315 1.00 0.00 N ATOM 450 CA GLN 127 1.471 12.185 32.442 1.00 0.00 C ATOM 451 C GLN 127 1.499 13.259 31.408 1.00 0.00 C ATOM 452 O GLN 127 1.084 13.039 30.294 1.00 0.00 O ATOM 453 N VAL 128 1.877 14.466 31.840 1.00 0.00 N ATOM 454 CA VAL 128 1.921 15.573 30.937 1.00 0.00 C ATOM 455 C VAL 128 3.079 15.407 29.947 1.00 0.00 C ATOM 456 O VAL 128 2.893 15.696 28.778 1.00 0.00 O ATOM 457 N ILE 129 4.220 14.883 30.379 1.00 0.00 N ATOM 458 CA ILE 129 5.325 14.617 29.473 1.00 0.00 C ATOM 459 C ILE 129 4.877 13.716 28.341 1.00 0.00 C ATOM 460 O ILE 129 5.104 13.985 27.135 1.00 0.00 O ATOM 461 N ARG 130 4.160 12.664 28.710 1.00 0.00 N ATOM 462 CA ARG 130 3.774 11.679 27.726 1.00 0.00 C ATOM 463 C ARG 130 2.742 12.301 26.815 1.00 0.00 C ATOM 464 O ARG 130 2.797 12.094 25.604 1.00 0.00 O ATOM 465 N HIS 131 1.805 13.050 27.373 1.00 0.00 N ATOM 466 CA HIS 131 0.816 13.751 26.512 1.00 0.00 C ATOM 467 C HIS 131 1.485 14.723 25.514 1.00 0.00 C ATOM 468 O HIS 131 1.060 14.859 24.387 1.00 0.00 O ATOM 469 N GLY 132 2.541 15.392 25.931 1.00 0.00 N ATOM 470 CA GLY 132 3.231 16.263 25.012 1.00 0.00 C ATOM 471 C GLY 132 3.955 15.537 23.865 1.00 0.00 C ATOM 472 O GLY 132 3.938 16.008 22.717 1.00 0.00 O ATOM 473 N SER 133 4.588 14.407 24.183 1.00 0.00 N ATOM 474 CA SER 133 5.259 13.606 23.200 1.00 0.00 C ATOM 475 C SER 133 4.278 13.090 22.182 1.00 0.00 C ATOM 476 O SER 133 4.476 13.240 20.995 1.00 0.00 O ATOM 477 N PHE 134 3.148 12.591 22.590 1.00 0.00 N ATOM 478 CA PHE 134 2.197 12.087 21.589 1.00 0.00 C ATOM 479 C PHE 134 1.785 13.251 20.655 1.00 0.00 C ATOM 480 O PHE 134 1.618 13.077 19.465 1.00 0.00 O ATOM 481 N ALA 135 1.667 14.439 21.210 1.00 0.00 N ATOM 482 CA ALA 135 1.209 15.606 20.480 1.00 0.00 C ATOM 483 C ALA 135 2.290 16.126 19.504 1.00 0.00 C ATOM 484 O ALA 135 1.974 16.496 18.403 1.00 0.00 O ATOM 485 N TYR 136 3.562 16.123 19.898 1.00 0.00 N ATOM 486 CA TYR 136 4.658 16.338 18.929 1.00 0.00 C ATOM 487 C TYR 136 4.611 15.282 17.813 1.00 0.00 C ATOM 488 O TYR 136 4.692 15.626 16.672 1.00 0.00 O ATOM 489 N PHE 137 4.482 13.997 18.121 1.00 0.00 N ATOM 490 CA PHE 137 4.328 13.021 17.032 1.00 0.00 C ATOM 491 C PHE 137 3.149 13.406 16.137 1.00 0.00 C ATOM 492 O PHE 137 3.194 13.224 14.927 1.00 0.00 O ATOM 493 N LYS 138 2.094 13.893 16.766 1.00 0.00 N ATOM 494 CA LYS 138 0.876 14.268 16.055 1.00 0.00 C ATOM 495 C LYS 138 1.196 15.386 15.085 1.00 0.00 C ATOM 496 O LYS 138 0.859 15.276 13.939 1.00 0.00 O ATOM 497 N GLN 139 1.840 16.452 15.582 1.00 0.00 N ATOM 498 CA GLN 139 2.221 17.624 14.792 1.00 0.00 C ATOM 499 C GLN 139 3.024 17.132 13.563 1.00 0.00 C ATOM 500 O GLN 139 2.759 17.527 12.418 1.00 0.00 O ATOM 501 N LEU 140 3.948 16.206 13.812 1.00 0.00 N ATOM 502 CA LEU 140 4.844 15.688 12.794 1.00 0.00 C ATOM 503 C LEU 140 4.076 14.774 11.807 1.00 0.00 C ATOM 504 O LEU 140 4.259 14.846 10.613 1.00 0.00 O ATOM 505 N VAL 141 3.136 13.966 12.267 1.00 0.00 N ATOM 506 CA VAL 141 2.379 13.182 11.291 1.00 0.00 C ATOM 507 C VAL 141 1.581 14.121 10.370 1.00 0.00 C ATOM 508 O VAL 141 1.320 13.814 9.187 1.00 0.00 O ATOM 509 N GLU 142 1.153 15.274 10.908 1.00 0.00 N ATOM 510 CA GLU 142 0.268 16.138 10.134 1.00 0.00 C ATOM 511 C GLU 142 1.124 16.866 9.081 1.00 0.00 C ATOM 512 O GLU 142 0.803 16.808 7.901 1.00 0.00 O ATOM 513 N GLN 143 2.233 17.475 9.504 1.00 0.00 N ATOM 514 CA GLN 143 3.221 17.990 8.569 1.00 0.00 C ATOM 515 C GLN 143 3.527 16.951 7.482 1.00 0.00 C ATOM 516 O GLN 143 3.545 17.286 6.320 1.00 0.00 O ATOM 517 N GLY 144 3.686 15.693 7.805 1.00 0.00 N ATOM 518 CA GLY 144 3.992 14.704 6.774 1.00 0.00 C ATOM 519 C GLY 144 2.864 14.415 5.803 1.00 0.00 C ATOM 520 O GLY 144 3.074 14.043 4.653 1.00 0.00 O ATOM 521 N ILE 145 1.653 14.546 6.275 1.00 0.00 N ATOM 522 CA ILE 145 0.522 14.322 5.420 1.00 0.00 C ATOM 523 C ILE 145 0.311 15.534 4.503 1.00 0.00 C ATOM 524 O ILE 145 -0.110 15.361 3.368 1.00 0.00 O ATOM 525 N ALA 146 0.590 16.744 5.006 1.00 0.00 N ATOM 526 CA ALA 146 0.512 17.967 4.192 1.00 0.00 C ATOM 527 C ALA 146 1.432 17.816 2.971 1.00 0.00 C ATOM 528 O ALA 146 0.991 18.081 1.872 1.00 0.00 O ATOM 529 N ASP 147 2.692 17.391 3.186 1.00 0.00 N ATOM 530 CA ASP 147 3.694 17.269 2.095 1.00 0.00 C ATOM 531 C ASP 147 3.522 16.035 1.239 1.00 0.00 C ATOM 532 O ASP 147 4.148 15.928 0.217 1.00 0.00 O ATOM 533 N GLY 148 2.767 15.052 1.666 1.00 0.00 N ATOM 534 CA GLY 148 2.666 13.838 0.866 1.00 0.00 C ATOM 535 C GLY 148 3.716 12.793 1.193 1.00 0.00 C ATOM 536 O GLY 148 3.820 11.763 0.528 1.00 0.00 O ATOM 537 N SER 149 4.517 13.003 2.218 1.00 0.00 N ATOM 538 CA SER 149 5.461 11.929 2.618 1.00 0.00 C ATOM 539 C SER 149 4.754 10.814 3.428 1.00 0.00 C ATOM 540 O SER 149 5.240 9.688 3.466 1.00 0.00 O ATOM 541 N LEU 150 3.603 11.112 4.046 1.00 0.00 N ATOM 542 CA LEU 150 2.806 10.096 4.786 1.00 0.00 C ATOM 543 C LEU 150 1.469 9.927 4.106 1.00 0.00 C ATOM 544 O LEU 150 0.672 10.805 4.128 1.00 0.00 O ATOM 545 N VAL 151 1.241 8.808 3.449 1.00 0.00 N ATOM 546 CA VAL 151 0.090 8.684 2.585 1.00 0.00 C ATOM 547 C VAL 151 -1.151 8.243 3.326 1.00 0.00 C ATOM 548 O VAL 151 -2.260 8.259 2.771 1.00 0.00 O ATOM 549 N PRO 152 -0.996 7.839 4.585 1.00 0.00 N ATOM 550 CA PRO 152 -2.138 7.332 5.304 1.00 0.00 C ATOM 551 C PRO 152 -3.054 8.506 5.543 1.00 0.00 C ATOM 552 O PRO 152 -2.582 9.632 5.730 1.00 0.00 O ATOM 553 N ASP 153 -4.345 8.221 5.544 1.00 0.00 N ATOM 554 CA ASP 153 -5.372 9.207 5.780 1.00 0.00 C ATOM 555 C ASP 153 -5.824 9.248 7.252 1.00 0.00 C ATOM 556 O ASP 153 -6.607 10.107 7.653 1.00 0.00 O ATOM 557 N LEU 154 -5.370 8.279 8.041 1.00 0.00 N ATOM 558 CA LEU 154 -5.727 8.170 9.434 1.00 0.00 C ATOM 559 C LEU 154 -5.325 9.452 10.086 1.00 0.00 C ATOM 560 O LEU 154 -4.254 10.010 9.882 1.00 0.00 O ATOM 561 N ASP 155 -6.213 9.940 10.891 1.00 0.00 N ATOM 562 CA ASP 155 -6.049 11.251 11.471 1.00 0.00 C ATOM 563 C ASP 155 -4.832 11.280 12.410 1.00 0.00 C ATOM 564 O ASP 155 -4.606 10.369 13.121 1.00 0.00 O ATOM 565 N ALA 156 -4.050 12.355 12.406 1.00 0.00 N ATOM 566 CA ALA 156 -2.845 12.387 13.183 1.00 0.00 C ATOM 567 C ALA 156 -2.937 12.086 14.622 1.00 0.00 C ATOM 568 O ALA 156 -1.979 11.546 15.191 1.00 0.00 O ATOM 569 N ASP 157 -4.029 12.458 15.255 1.00 0.00 N ATOM 570 CA ASP 157 -4.132 12.319 16.684 1.00 0.00 C ATOM 571 C ASP 157 -4.371 10.840 17.041 1.00 0.00 C ATOM 572 O ASP 157 -3.988 10.392 18.136 1.00 0.00 O ATOM 573 N THR 158 -4.994 10.084 16.128 1.00 0.00 N ATOM 574 CA THR 158 -5.175 8.641 16.280 1.00 0.00 C ATOM 575 C THR 158 -3.857 7.953 15.972 1.00 0.00 C ATOM 576 O THR 158 -3.394 7.076 16.691 1.00 0.00 O ATOM 577 N ALA 159 -3.169 8.369 14.929 1.00 0.00 N ATOM 578 CA ALA 159 -2.043 7.543 14.497 1.00 0.00 C ATOM 579 C ALA 159 -0.909 7.683 15.522 1.00 0.00 C ATOM 580 O ALA 159 -0.229 6.731 15.828 1.00 0.00 O ATOM 581 N ALA 160 -0.712 8.863 16.068 1.00 0.00 N ATOM 582 CA ALA 160 0.351 9.043 17.012 1.00 0.00 C ATOM 583 C ALA 160 0.134 8.173 18.235 1.00 0.00 C ATOM 584 O ALA 160 1.083 7.712 18.823 1.00 0.00 O ATOM 585 N PHE 161 -1.125 7.921 18.608 1.00 0.00 N ATOM 586 CA PHE 161 -1.426 7.062 19.761 1.00 0.00 C ATOM 587 C PHE 161 -1.175 5.588 19.430 1.00 0.00 C ATOM 588 O PHE 161 -0.607 4.840 20.241 1.00 0.00 O ATOM 589 N VAL 162 -1.658 5.183 18.264 1.00 0.00 N ATOM 590 CA VAL 162 -1.434 3.885 17.835 1.00 0.00 C ATOM 591 C VAL 162 0.057 3.584 17.820 1.00 0.00 C ATOM 592 O VAL 162 0.534 2.603 18.413 1.00 0.00 O ATOM 593 N LEU 163 0.799 4.439 17.145 1.00 0.00 N ATOM 594 CA LEU 163 2.229 4.214 17.048 1.00 0.00 C ATOM 595 C LEU 163 2.866 4.206 18.450 1.00 0.00 C ATOM 596 O LEU 163 3.586 3.231 18.833 1.00 0.00 O ATOM 597 N ASN 164 2.546 5.217 19.251 1.00 0.00 N ATOM 598 CA ASN 164 3.171 5.270 20.554 1.00 0.00 C ATOM 599 C ASN 164 2.755 4.084 21.472 1.00 0.00 C ATOM 600 O ASN 164 3.568 3.546 22.206 1.00 0.00 O ATOM 601 N VAL 165 1.517 3.651 21.379 1.00 0.00 N ATOM 602 CA VAL 165 1.068 2.540 22.182 1.00 0.00 C ATOM 603 C VAL 165 1.762 1.268 21.771 1.00 0.00 C ATOM 604 O VAL 165 2.196 0.549 22.624 1.00 0.00 O ATOM 605 N VAL 166 1.881 1.005 20.476 1.00 0.00 N ATOM 606 CA VAL 166 2.552 -0.187 19.948 1.00 0.00 C ATOM 607 C VAL 166 3.982 -0.218 20.294 1.00 0.00 C ATOM 608 O VAL 166 4.492 -1.279 20.654 1.00 0.00 O ATOM 609 N PHE 167 4.667 0.931 20.300 1.00 0.00 N ATOM 610 CA PHE 167 6.077 0.893 20.724 1.00 0.00 C ATOM 611 C PHE 167 6.263 0.623 22.185 1.00 0.00 C ATOM 612 O PHE 167 7.127 -0.160 22.549 1.00 0.00 O ATOM 613 N THR 168 5.450 1.205 23.065 1.00 0.00 N ATOM 614 CA THR 168 5.535 0.871 24.489 1.00 0.00 C ATOM 615 C THR 168 5.281 -0.613 24.746 1.00 0.00 C ATOM 616 O THR 168 5.950 -1.240 25.548 1.00 0.00 O ATOM 617 N GLU 169 4.352 -1.204 24.020 1.00 0.00 N ATOM 618 CA GLU 169 4.062 -2.593 24.268 1.00 0.00 C ATOM 619 C GLU 169 5.139 -3.539 23.716 1.00 0.00 C ATOM 620 O GLU 169 5.433 -4.571 24.355 1.00 0.00 O ATOM 621 N LEU 170 5.643 -3.227 22.509 1.00 0.00 N ATOM 622 CA LEU 170 6.851 -3.810 21.986 1.00 0.00 C ATOM 623 C LEU 170 8.084 -3.619 22.974 1.00 0.00 C ATOM 624 O LEU 170 8.849 -4.544 23.198 1.00 0.00 O ATOM 625 N GLY 171 8.281 -2.443 23.551 1.00 0.00 N ATOM 626 CA GLY 171 9.420 -2.259 24.560 1.00 0.00 C ATOM 627 C GLY 171 9.211 -3.173 25.775 1.00 0.00 C ATOM 628 O GLY 171 10.123 -3.831 26.206 1.00 0.00 O ATOM 629 N ASN 172 7.969 -3.272 26.260 1.00 0.00 N ATOM 630 CA ASN 172 7.621 -4.173 27.359 1.00 0.00 C ATOM 631 C ASN 172 7.938 -5.676 27.036 1.00 0.00 C ATOM 632 O ASN 172 8.546 -6.349 27.852 1.00 0.00 O ATOM 633 N HIS 173 7.509 -6.182 25.875 1.00 0.00 N ATOM 634 CA HIS 173 7.783 -7.573 25.475 1.00 0.00 C ATOM 635 C HIS 173 9.258 -7.811 25.285 1.00 0.00 C ATOM 636 O HIS 173 9.787 -8.844 25.688 1.00 0.00 O ATOM 637 N LEU 174 9.930 -6.856 24.686 1.00 0.00 N ATOM 638 CA LEU 174 11.409 -6.925 24.564 1.00 0.00 C ATOM 639 C LEU 174 12.136 -7.128 25.916 1.00 0.00 C ATOM 640 O LEU 174 13.068 -7.896 26.013 1.00 0.00 O ATOM 641 N ILE 175 11.687 -6.484 26.960 1.00 0.00 N ATOM 642 CA ILE 175 12.227 -6.767 28.289 1.00 0.00 C ATOM 643 C ILE 175 11.901 -8.180 28.773 1.00 0.00 C ATOM 644 O ILE 175 12.747 -8.879 29.346 1.00 0.00 O ATOM 645 N GLU 176 10.673 -8.591 28.545 1.00 0.00 N ATOM 646 CA GLU 176 10.246 -9.907 28.958 1.00 0.00 C ATOM 647 C GLU 176 11.059 -10.969 28.221 1.00 0.00 C ATOM 648 O GLU 176 11.501 -11.920 28.851 1.00 0.00 O ATOM 649 N ARG 177 11.238 -10.804 26.912 1.00 0.00 N ATOM 650 CA ARG 177 11.983 -11.771 26.042 1.00 0.00 C ATOM 651 C ARG 177 13.497 -11.542 26.150 1.00 0.00 C ATOM 652 O ARG 177 14.277 -12.402 25.866 1.00 0.00 O ATOM 653 N PHE 178 13.917 -10.394 26.604 1.00 0.00 N ATOM 654 CA PHE 178 15.313 -10.062 26.655 1.00 0.00 C ATOM 655 C PHE 178 15.926 -10.035 25.282 1.00 0.00 C ATOM 656 O PHE 178 17.096 -10.200 25.173 1.00 0.00 O ATOM 657 N ALA 179 15.157 -9.721 24.246 1.00 0.00 N ATOM 658 CA ALA 179 15.765 -9.242 22.997 1.00 0.00 C ATOM 659 C ALA 179 14.701 -8.452 22.269 1.00 0.00 C ATOM 660 O ALA 179 13.552 -8.521 22.653 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 408 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 38.43 87.6 170 67.5 252 ARMSMC SECONDARY STRUCTURE . . 42.04 86.0 129 64.5 200 ARMSMC SURFACE . . . . . . . . 37.51 88.9 126 70.0 180 ARMSMC BURIED . . . . . . . . 40.95 84.1 44 61.1 72 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 90 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 80 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 71 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 68 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 51 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 54 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 49 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.72 (Number of atoms: 102) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.72 102 80.3 127 CRMSCA CRN = ALL/NP . . . . . 0.0365 CRMSCA SECONDARY STRUCTURE . . 3.35 80 80.0 100 CRMSCA SURFACE . . . . . . . . 3.93 74 81.3 91 CRMSCA BURIED . . . . . . . . 3.11 28 77.8 36 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.68 408 65.0 628 CRMSMC SECONDARY STRUCTURE . . 3.31 320 64.8 494 CRMSMC SURFACE . . . . . . . . 3.88 296 65.6 451 CRMSMC BURIED . . . . . . . . 3.10 112 63.3 177 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 507 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 425 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 406 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 377 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 130 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.68 408 40.2 1015 CRMSALL SECONDARY STRUCTURE . . 3.31 320 39.7 806 CRMSALL SURFACE . . . . . . . . 3.88 296 39.9 741 CRMSALL BURIED . . . . . . . . 3.10 112 40.9 274 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.235 1.000 0.500 102 80.3 127 ERRCA SECONDARY STRUCTURE . . 2.931 1.000 0.500 80 80.0 100 ERRCA SURFACE . . . . . . . . 3.424 1.000 0.500 74 81.3 91 ERRCA BURIED . . . . . . . . 2.736 1.000 0.500 28 77.8 36 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.194 1.000 0.500 408 65.0 628 ERRMC SECONDARY STRUCTURE . . 2.894 1.000 0.500 320 64.8 494 ERRMC SURFACE . . . . . . . . 3.378 1.000 0.500 296 65.6 451 ERRMC BURIED . . . . . . . . 2.709 1.000 0.500 112 63.3 177 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 507 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 425 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 406 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 377 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 130 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.194 1.000 0.500 408 40.2 1015 ERRALL SECONDARY STRUCTURE . . 2.894 1.000 0.500 320 39.7 806 ERRALL SURFACE . . . . . . . . 3.378 1.000 0.500 296 39.9 741 ERRALL BURIED . . . . . . . . 2.709 1.000 0.500 112 40.9 274 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 5 34 58 86 102 102 127 DISTCA CA (P) 3.94 26.77 45.67 67.72 80.31 127 DISTCA CA (RMS) 0.84 1.57 2.04 2.82 3.72 DISTCA ALL (N) 18 127 233 340 408 408 1015 DISTALL ALL (P) 1.77 12.51 22.96 33.50 40.20 1015 DISTALL ALL (RMS) 0.84 1.49 2.02 2.75 3.68 DISTALL END of the results output