####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 54 ( 216), selected 54 , name T0575AL285_1-D1 # Molecule2: number of CA atoms 63 ( 499), selected 54 , name T0575-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0575AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 54 10 - 63 1.96 1.96 LCS_AVERAGE: 85.71 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 54 10 - 63 1.96 1.96 LCS_AVERAGE: 85.71 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 10 - 29 1.00 3.02 LCS_AVERAGE: 26.95 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 54 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT P 10 P 10 20 54 54 5 13 27 35 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT E 11 E 11 20 54 54 13 18 25 32 43 49 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT E 12 E 12 20 54 54 7 16 25 32 44 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT K 13 K 13 20 54 54 13 18 27 38 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT R 14 R 14 20 54 54 13 18 27 35 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT S 15 S 15 20 54 54 13 18 27 34 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT R 16 R 16 20 54 54 13 18 27 39 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT L 17 L 17 20 54 54 13 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT I 18 I 18 20 54 54 13 18 27 39 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT D 19 D 19 20 54 54 13 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT V 20 V 20 20 54 54 13 18 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT L 21 L 21 20 54 54 13 18 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT L 22 L 22 20 54 54 13 18 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT D 23 D 23 20 54 54 13 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT E 24 E 24 20 54 54 13 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT F 25 F 25 20 54 54 9 18 26 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT A 26 A 26 20 54 54 9 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Q 27 Q 27 20 54 54 7 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT N 28 N 28 20 54 54 9 18 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT D 29 D 29 20 54 54 3 6 12 33 47 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Y 30 Y 30 9 54 54 3 7 21 38 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT D 31 D 31 9 54 54 3 10 25 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT S 32 S 32 14 54 54 4 16 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT V 33 V 33 14 54 54 6 13 27 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT S 34 S 34 14 54 54 3 12 28 39 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT I 35 I 35 14 54 54 7 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT N 36 N 36 14 54 54 8 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT R 37 R 37 14 54 54 8 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT I 38 I 38 14 54 54 8 15 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT T 39 T 39 14 54 54 8 18 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT E 40 E 40 14 54 54 8 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT R 41 R 41 14 54 54 8 13 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT A 42 A 42 14 54 54 8 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT G 43 G 43 14 54 54 8 13 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT I 44 I 44 14 54 54 8 13 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT A 45 A 45 14 54 54 8 13 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT K 46 K 46 14 54 54 4 6 9 25 45 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT G 47 G 47 17 54 54 4 6 19 28 37 44 51 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT S 48 S 48 17 54 54 9 16 20 32 43 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT F 49 F 49 17 54 54 9 16 25 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Y 50 Y 50 17 54 54 9 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Q 51 Q 51 17 54 54 9 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Y 52 Y 52 17 54 54 9 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT F 53 F 53 17 54 54 9 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT A 54 A 54 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT D 55 D 55 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT K 56 K 56 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT K 57 K 57 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT D 58 D 58 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT C 59 C 59 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Y 60 Y 60 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT L 61 L 61 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT Y 62 Y 62 17 54 54 10 16 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_GDT L 63 L 63 17 54 54 8 11 25 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 LCS_AVERAGE LCS_A: 66.13 ( 26.95 85.71 85.71 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 18 28 40 48 51 53 54 54 54 54 54 54 54 54 54 54 54 54 54 GDT PERCENT_AT 20.63 28.57 44.44 63.49 76.19 80.95 84.13 85.71 85.71 85.71 85.71 85.71 85.71 85.71 85.71 85.71 85.71 85.71 85.71 85.71 GDT RMS_LOCAL 0.30 0.59 1.07 1.41 1.67 1.79 1.89 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 GDT RMS_ALL_AT 3.70 3.14 2.42 2.15 2.00 1.98 1.97 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 1.96 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA P 10 P 10 2.465 3 0.490 0.490 3.138 63.333 36.190 LGA E 11 E 11 3.657 5 0.042 0.042 3.657 48.333 21.481 LGA E 12 E 12 3.149 5 0.047 0.047 3.215 53.571 23.810 LGA K 13 K 13 1.907 5 0.053 0.053 2.263 70.833 31.481 LGA R 14 R 14 2.349 7 0.040 0.040 2.349 64.762 23.550 LGA S 15 S 15 2.480 2 0.015 0.015 2.480 64.762 43.175 LGA R 16 R 16 1.680 7 0.036 0.036 1.940 77.143 28.052 LGA L 17 L 17 1.275 4 0.011 0.011 1.402 81.429 40.714 LGA I 18 I 18 1.729 4 0.027 0.027 1.729 77.143 38.571 LGA D 19 D 19 1.168 4 0.023 0.023 1.320 88.333 44.167 LGA V 20 V 20 0.249 3 0.050 0.050 0.951 95.238 54.422 LGA L 21 L 21 1.304 4 0.024 0.024 1.726 81.548 40.774 LGA L 22 L 22 0.684 4 0.021 0.021 0.900 90.476 45.238 LGA D 23 D 23 0.979 4 0.030 0.030 1.438 85.952 42.976 LGA E 24 E 24 1.751 5 0.055 0.055 2.509 69.048 30.688 LGA F 25 F 25 2.174 7 0.044 0.044 2.574 64.881 23.593 LGA A 26 A 26 2.161 1 0.006 0.006 2.161 64.762 51.810 LGA Q 27 Q 27 1.663 5 0.161 0.161 1.833 75.000 33.333 LGA N 28 N 28 1.597 4 0.682 0.682 2.855 68.929 34.464 LGA D 29 D 29 2.566 4 0.141 0.141 3.217 57.262 28.631 LGA Y 30 Y 30 2.309 8 0.067 0.067 2.309 68.810 22.937 LGA D 31 D 31 2.093 4 0.045 0.045 2.093 68.810 34.405 LGA S 32 S 32 1.067 2 0.120 0.120 2.006 77.262 51.508 LGA V 33 V 33 1.416 3 0.077 0.077 1.416 85.952 49.116 LGA S 34 S 34 2.282 2 0.206 0.206 2.282 70.833 47.222 LGA I 35 I 35 0.733 4 0.029 0.029 1.379 85.952 42.976 LGA N 36 N 36 1.250 4 0.059 0.059 1.501 81.548 40.774 LGA R 37 R 37 1.648 7 0.083 0.083 1.648 72.857 26.494 LGA I 38 I 38 1.742 4 0.050 0.050 1.752 72.857 36.429 LGA T 39 T 39 1.584 3 0.065 0.065 1.903 72.857 41.633 LGA E 40 E 40 1.901 5 0.034 0.034 2.201 68.810 30.582 LGA R 41 R 41 2.085 7 0.093 0.093 2.085 70.833 25.758 LGA A 42 A 42 1.552 1 0.080 0.080 1.910 72.857 58.286 LGA G 43 G 43 1.673 0 0.230 0.230 2.167 70.833 70.833 LGA I 44 I 44 1.390 4 0.111 0.111 2.115 75.119 37.560 LGA A 45 A 45 1.329 1 0.080 0.080 1.637 77.143 61.714 LGA K 46 K 46 3.186 5 0.628 0.628 4.729 49.048 21.799 LGA G 47 G 47 4.180 0 0.203 0.203 4.205 41.905 41.905 LGA S 48 S 48 3.166 2 0.229 0.229 3.380 55.476 36.984 LGA F 49 F 49 2.467 7 0.020 0.020 2.834 64.881 23.593 LGA Y 50 Y 50 2.341 8 0.061 0.061 2.450 64.762 21.587 LGA Q 51 Q 51 2.112 5 0.114 0.114 2.265 70.952 31.534 LGA Y 52 Y 52 1.639 8 0.034 0.034 1.952 77.143 25.714 LGA F 53 F 53 1.543 7 0.021 0.021 1.733 72.857 26.494 LGA A 54 A 54 1.678 1 0.124 0.124 1.678 77.143 61.714 LGA D 55 D 55 1.356 4 0.066 0.066 1.589 79.286 39.643 LGA K 56 K 56 1.359 5 0.028 0.028 1.437 81.429 36.190 LGA K 57 K 57 1.467 5 0.015 0.015 1.467 81.429 36.190 LGA D 58 D 58 1.313 4 0.026 0.026 1.323 81.429 40.714 LGA C 59 C 59 1.246 2 0.019 0.019 1.305 81.429 54.286 LGA Y 60 Y 60 1.323 8 0.054 0.054 1.536 79.286 26.429 LGA L 61 L 61 1.491 4 0.016 0.016 1.810 77.143 38.571 LGA Y 62 Y 62 1.591 8 0.054 0.054 2.045 70.833 23.611 LGA L 63 L 63 2.031 4 0.057 0.057 2.398 66.786 33.393 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 54 216 216 100.00 423 216 51.06 63 SUMMARY(RMSD_GDC): 1.961 1.938 1.938 62.052 31.995 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 54 63 4.0 54 1.96 65.873 75.557 2.620 LGA_LOCAL RMSD: 1.961 Number of atoms: 54 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.961 Number of assigned atoms: 54 Std_ASGN_ATOMS RMSD: 1.961 Standard rmsd on all 54 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.508910 * X + 0.742833 * Y + 0.434983 * Z + -62.617146 Y_new = -0.860504 * X + 0.425310 * Y + 0.280437 * Z + 23.359543 Z_new = 0.023315 * X + -0.517021 * Y + 0.855655 * Z + 46.148746 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.036717 -0.023317 -0.543532 [DEG: -59.3995 -1.3360 -31.1421 ] ZXZ: 2.143442 0.543982 3.096528 [DEG: 122.8102 31.1678 177.4180 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0575AL285_1-D1 REMARK 2: T0575-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0575AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 54 63 4.0 54 1.96 75.557 1.96 REMARK ---------------------------------------------------------- MOLECULE T0575AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3knwA ATOM 1 N PRO 10 28.584 11.951 50.501 1.00 0.00 N ATOM 2 CA PRO 10 27.567 13.017 50.713 1.00 0.00 C ATOM 3 C PRO 10 26.740 13.089 49.420 1.00 0.00 C ATOM 4 O PRO 10 25.602 12.566 49.388 1.00 0.00 O ATOM 5 N GLU 11 27.297 13.664 48.347 1.00 0.00 N ATOM 6 CA GLU 11 26.604 13.599 47.071 1.00 0.00 C ATOM 7 C GLU 11 26.551 12.142 46.561 1.00 0.00 C ATOM 8 O GLU 11 25.550 11.692 45.986 1.00 0.00 O ATOM 9 N GLU 12 27.611 11.398 46.815 1.00 0.00 N ATOM 10 CA GLU 12 27.658 10.000 46.426 1.00 0.00 C ATOM 11 C GLU 12 26.698 9.190 47.286 1.00 0.00 C ATOM 12 O GLU 12 26.091 8.237 46.813 1.00 0.00 O ATOM 13 N LYS 13 26.520 9.584 48.540 1.00 0.00 N ATOM 14 CA LYS 13 25.505 8.955 49.402 1.00 0.00 C ATOM 15 C LYS 13 24.094 9.240 48.860 1.00 0.00 C ATOM 16 O LYS 13 23.301 8.331 48.632 1.00 0.00 O ATOM 17 N ARG 14 23.805 10.511 48.643 1.00 0.00 N ATOM 18 CA ARG 14 22.560 10.880 48.027 1.00 0.00 C ATOM 19 C ARG 14 22.299 9.988 46.799 1.00 0.00 C ATOM 20 O ARG 14 21.188 9.474 46.645 1.00 0.00 O ATOM 21 N SER 15 23.330 9.786 45.960 1.00 0.00 N ATOM 22 CA SER 15 23.201 8.989 44.721 1.00 0.00 C ATOM 23 C SER 15 22.961 7.547 45.026 1.00 0.00 C ATOM 24 O SER 15 22.185 6.872 44.336 1.00 0.00 O ATOM 25 N ARG 16 23.650 7.053 46.050 1.00 0.00 N ATOM 26 CA ARG 16 23.423 5.676 46.478 1.00 0.00 C ATOM 27 C ARG 16 21.966 5.454 46.835 1.00 0.00 C ATOM 28 O ARG 16 21.364 4.473 46.408 1.00 0.00 O ATOM 29 N LEU 17 21.419 6.374 47.617 1.00 0.00 N ATOM 30 CA LEU 17 20.038 6.260 48.058 1.00 0.00 C ATOM 31 C LEU 17 19.083 6.243 46.864 1.00 0.00 C ATOM 32 O LEU 17 18.208 5.396 46.789 1.00 0.00 O ATOM 33 N ILE 18 19.251 7.166 45.938 1.00 0.00 N ATOM 34 CA ILE 18 18.419 7.207 44.741 1.00 0.00 C ATOM 35 C ILE 18 18.543 5.906 43.981 1.00 0.00 C ATOM 36 O ILE 18 17.536 5.333 43.588 1.00 0.00 O ATOM 37 N ASP 19 19.772 5.419 43.793 1.00 0.00 N ATOM 38 CA ASP 19 19.984 4.170 43.070 1.00 0.00 C ATOM 39 C ASP 19 19.401 2.947 43.788 1.00 0.00 C ATOM 40 O ASP 19 18.781 2.099 43.135 1.00 0.00 O ATOM 41 N VAL 20 19.559 2.861 45.104 1.00 0.00 N ATOM 42 CA VAL 20 18.774 1.914 45.907 1.00 0.00 C ATOM 43 C VAL 20 17.276 2.029 45.596 1.00 0.00 C ATOM 44 O VAL 20 16.637 1.035 45.229 1.00 0.00 O ATOM 45 N LEU 21 16.721 3.233 45.739 1.00 0.00 N ATOM 46 CA LEU 21 15.309 3.443 45.498 1.00 0.00 C ATOM 47 C LEU 21 14.874 2.999 44.090 1.00 0.00 C ATOM 48 O LEU 21 13.845 2.342 43.925 1.00 0.00 O ATOM 49 N LEU 22 15.711 3.329 43.111 1.00 0.00 N ATOM 50 CA LEU 22 15.421 3.102 41.729 1.00 0.00 C ATOM 51 C LEU 22 15.240 1.616 41.427 1.00 0.00 C ATOM 52 O LEU 22 14.277 1.238 40.781 1.00 0.00 O ATOM 53 N ASP 23 16.166 0.794 41.902 1.00 0.00 N ATOM 54 CA ASP 23 16.030 -0.643 41.786 1.00 0.00 C ATOM 55 C ASP 23 14.739 -1.076 42.445 1.00 0.00 C ATOM 56 O ASP 23 13.967 -1.838 41.863 1.00 0.00 O ATOM 57 N GLU 24 14.475 -0.577 43.639 1.00 0.00 N ATOM 58 CA GLU 24 13.281 -0.997 44.327 1.00 0.00 C ATOM 59 C GLU 24 12.094 -0.773 43.419 1.00 0.00 C ATOM 60 O GLU 24 11.275 -1.663 43.248 1.00 0.00 O ATOM 61 N PHE 25 12.030 0.406 42.808 1.00 0.00 N ATOM 62 CA PHE 25 10.857 0.800 42.031 1.00 0.00 C ATOM 63 C PHE 25 10.692 0.013 40.724 1.00 0.00 C ATOM 64 O PHE 25 9.580 -0.195 40.297 1.00 0.00 O ATOM 65 N ALA 26 11.766 -0.426 40.083 1.00 0.00 N ATOM 66 CA ALA 26 11.623 -1.316 38.921 1.00 0.00 C ATOM 67 C ALA 26 10.912 -2.624 39.273 1.00 0.00 C ATOM 68 O ALA 26 10.167 -3.156 38.454 1.00 0.00 O ATOM 69 N GLN 27 11.187 -3.143 40.470 1.00 0.00 N ATOM 70 CA GLN 27 10.591 -4.376 40.968 1.00 0.00 C ATOM 71 C GLN 27 9.167 -4.167 41.447 1.00 0.00 C ATOM 72 O GLN 27 8.296 -4.963 41.119 1.00 0.00 O ATOM 73 N ASN 28 8.928 -3.122 42.232 1.00 0.00 N ATOM 74 CA ASN 28 7.696 -3.040 43.019 1.00 0.00 C ATOM 75 C ASN 28 6.844 -1.786 42.846 1.00 0.00 C ATOM 76 O ASN 28 5.776 -1.664 43.446 1.00 0.00 O ATOM 77 N ASP 29 7.282 -0.848 42.030 1.00 0.00 N ATOM 78 CA ASP 29 6.538 0.384 41.892 1.00 0.00 C ATOM 79 C ASP 29 6.821 1.351 43.024 1.00 0.00 C ATOM 80 O ASP 29 7.753 1.146 43.864 1.00 0.00 O ATOM 81 N TYR 30 6.031 2.424 43.051 1.00 0.00 N ATOM 82 CA TYR 30 6.301 3.506 43.951 1.00 0.00 C ATOM 83 C TYR 30 5.304 3.569 45.065 1.00 0.00 C ATOM 84 O TYR 30 5.691 3.540 46.248 1.00 0.00 O ATOM 85 N ASP 31 4.024 3.665 44.714 1.00 0.00 N ATOM 86 CA ASP 31 2.982 3.800 45.736 1.00 0.00 C ATOM 87 C ASP 31 2.940 2.570 46.653 1.00 0.00 C ATOM 88 O ASP 31 2.598 2.676 47.830 1.00 0.00 O ATOM 89 N SER 32 3.293 1.406 46.116 1.00 0.00 N ATOM 90 CA SER 32 3.308 0.180 46.903 1.00 0.00 C ATOM 91 C SER 32 4.295 0.163 48.065 1.00 0.00 C ATOM 92 O SER 32 4.087 -0.583 49.040 1.00 0.00 O ATOM 93 N VAL 33 5.365 0.962 47.994 1.00 0.00 N ATOM 94 CA VAL 33 6.452 0.846 48.992 1.00 0.00 C ATOM 95 C VAL 33 6.429 1.896 50.087 1.00 0.00 C ATOM 96 O VAL 33 5.991 3.029 49.870 1.00 0.00 O ATOM 97 N SER 34 6.910 1.504 51.272 1.00 0.00 N ATOM 98 CA SER 34 7.086 2.430 52.391 1.00 0.00 C ATOM 99 C SER 34 8.540 2.828 52.496 1.00 0.00 C ATOM 100 O SER 34 9.408 2.227 51.870 1.00 0.00 O ATOM 101 N ILE 35 8.835 3.834 53.296 1.00 0.00 N ATOM 102 CA ILE 35 10.239 4.159 53.546 1.00 0.00 C ATOM 103 C ILE 35 11.060 2.982 54.098 1.00 0.00 C ATOM 104 O ILE 35 12.220 2.825 53.748 1.00 0.00 O ATOM 105 N ASN 36 10.444 2.173 54.951 1.00 0.00 N ATOM 106 CA ASN 36 11.090 1.030 55.586 1.00 0.00 C ATOM 107 C ASN 36 11.796 0.137 54.578 1.00 0.00 C ATOM 108 O ASN 36 12.936 -0.267 54.798 1.00 0.00 O ATOM 109 N ARG 37 11.126 -0.195 53.484 1.00 0.00 N ATOM 110 CA ARG 37 11.754 -1.039 52.483 1.00 0.00 C ATOM 111 C ARG 37 12.876 -0.222 51.876 1.00 0.00 C ATOM 112 O ARG 37 14.019 -0.662 51.799 1.00 0.00 O ATOM 113 N ILE 38 12.528 0.984 51.458 1.00 0.00 N ATOM 114 CA ILE 38 13.501 1.919 50.957 1.00 0.00 C ATOM 115 C ILE 38 14.750 2.054 51.905 1.00 0.00 C ATOM 116 O ILE 38 15.877 1.972 51.408 1.00 0.00 O ATOM 117 N THR 39 14.557 2.224 53.231 1.00 0.00 N ATOM 118 CA THR 39 15.695 2.254 54.228 1.00 0.00 C ATOM 119 C THR 39 16.431 0.924 54.308 1.00 0.00 C ATOM 120 O THR 39 17.657 0.869 54.240 1.00 0.00 O ATOM 121 N GLU 40 15.678 -0.150 54.472 1.00 0.00 N ATOM 122 CA GLU 40 16.246 -1.490 54.427 1.00 0.00 C ATOM 123 C GLU 40 17.091 -1.732 53.149 1.00 0.00 C ATOM 124 O GLU 40 18.193 -2.307 53.226 1.00 0.00 O ATOM 125 N ARG 41 16.595 -1.319 51.982 1.00 0.00 N ATOM 126 CA ARG 41 17.325 -1.598 50.737 1.00 0.00 C ATOM 127 C ARG 41 18.644 -0.846 50.751 1.00 0.00 C ATOM 128 O ARG 41 19.700 -1.424 50.475 1.00 0.00 O ATOM 129 N ALA 42 18.586 0.436 51.099 1.00 0.00 N ATOM 130 CA ALA 42 19.736 1.310 50.950 1.00 0.00 C ATOM 131 C ALA 42 20.803 1.041 51.995 1.00 0.00 C ATOM 132 O ALA 42 21.973 1.252 51.716 1.00 0.00 O ATOM 133 N GLY 43 20.388 0.574 53.185 1.00 0.00 N ATOM 134 CA GLY 43 21.278 0.436 54.327 1.00 0.00 C ATOM 135 C GLY 43 21.376 1.685 55.180 1.00 0.00 C ATOM 136 O GLY 43 22.094 1.717 56.169 1.00 0.00 O ATOM 137 N ILE 44 20.639 2.718 54.828 1.00 0.00 N ATOM 138 CA ILE 44 20.748 3.976 55.530 1.00 0.00 C ATOM 139 C ILE 44 19.726 4.056 56.658 1.00 0.00 C ATOM 140 O ILE 44 18.595 3.601 56.484 1.00 0.00 O ATOM 141 N ALA 45 20.117 4.609 57.841 1.00 0.00 N ATOM 142 CA ALA 45 19.124 4.836 58.910 1.00 0.00 C ATOM 143 C ALA 45 18.122 5.883 58.452 1.00 0.00 C ATOM 144 O ALA 45 18.433 6.602 57.482 1.00 0.00 O ATOM 145 N LYS 46 16.943 5.967 59.098 1.00 0.00 N ATOM 146 CA LYS 46 15.913 6.939 58.677 1.00 0.00 C ATOM 147 C LYS 46 16.365 8.372 58.876 1.00 0.00 C ATOM 148 O LYS 46 16.106 9.226 58.022 1.00 0.00 O ATOM 149 N GLY 47 17.044 8.637 59.995 1.00 0.00 N ATOM 150 CA GLY 47 17.453 9.987 60.329 1.00 0.00 C ATOM 151 C GLY 47 18.306 10.577 59.232 1.00 0.00 C ATOM 152 O GLY 47 18.164 11.747 58.871 1.00 0.00 O ATOM 153 N SER 48 19.190 9.740 58.704 1.00 0.00 N ATOM 154 CA SER 48 20.061 10.068 57.585 1.00 0.00 C ATOM 155 C SER 48 19.302 10.422 56.294 1.00 0.00 C ATOM 156 O SER 48 19.484 11.497 55.713 1.00 0.00 O ATOM 157 N PHE 49 18.456 9.495 55.859 1.00 0.00 N ATOM 158 CA PHE 49 17.622 9.651 54.671 1.00 0.00 C ATOM 159 C PHE 49 16.864 10.963 54.725 1.00 0.00 C ATOM 160 O PHE 49 16.686 11.656 53.725 1.00 0.00 O ATOM 161 N TYR 50 16.410 11.311 55.907 1.00 0.00 N ATOM 162 CA TYR 50 15.669 12.526 56.031 1.00 0.00 C ATOM 163 C TYR 50 16.556 13.771 55.977 1.00 0.00 C ATOM 164 O TYR 50 16.041 14.845 55.717 1.00 0.00 O ATOM 165 N GLN 51 17.871 13.659 56.171 1.00 0.00 N ATOM 166 CA GLN 51 18.726 14.810 55.859 1.00 0.00 C ATOM 167 C GLN 51 18.762 15.151 54.367 1.00 0.00 C ATOM 168 O GLN 51 18.845 16.308 53.987 1.00 0.00 O ATOM 169 N TYR 52 18.647 14.124 53.538 1.00 0.00 N ATOM 170 CA TYR 52 18.690 14.241 52.078 1.00 0.00 C ATOM 171 C TYR 52 17.346 14.551 51.444 1.00 0.00 C ATOM 172 O TYR 52 17.259 15.364 50.530 1.00 0.00 O ATOM 173 N PHE 53 16.298 13.891 51.914 1.00 0.00 N ATOM 174 CA PHE 53 14.974 14.067 51.328 1.00 0.00 C ATOM 175 C PHE 53 13.944 14.295 52.389 1.00 0.00 C ATOM 176 O PHE 53 13.874 13.543 53.344 1.00 0.00 O ATOM 177 N ALA 54 13.094 15.290 52.215 1.00 0.00 N ATOM 178 CA ALA 54 12.122 15.577 53.276 1.00 0.00 C ATOM 179 C ALA 54 10.921 14.605 53.369 1.00 0.00 C ATOM 180 O ALA 54 10.257 14.535 54.391 1.00 0.00 O ATOM 181 N ASP 55 10.641 13.840 52.326 1.00 0.00 N ATOM 182 CA ASP 55 9.477 12.921 52.346 1.00 0.00 C ATOM 183 C ASP 55 9.600 11.886 51.258 1.00 0.00 C ATOM 184 O ASP 55 10.383 12.075 50.343 1.00 0.00 O ATOM 185 N LYS 56 8.836 10.809 51.367 1.00 0.00 N ATOM 186 CA LYS 56 8.789 9.814 50.334 1.00 0.00 C ATOM 187 C LYS 56 8.516 10.495 48.974 1.00 0.00 C ATOM 188 O LYS 56 9.095 10.133 47.978 1.00 0.00 O ATOM 189 N LYS 57 7.690 11.527 48.985 1.00 0.00 N ATOM 190 CA LYS 57 7.309 12.228 47.781 1.00 0.00 C ATOM 191 C LYS 57 8.449 13.080 47.205 1.00 0.00 C ATOM 192 O LYS 57 8.707 12.985 45.994 1.00 0.00 O ATOM 193 N ASP 58 9.144 13.871 48.025 1.00 0.00 N ATOM 194 CA ASP 58 10.344 14.600 47.542 1.00 0.00 C ATOM 195 C ASP 58 11.331 13.657 46.845 1.00 0.00 C ATOM 196 O ASP 58 11.904 13.966 45.799 1.00 0.00 O ATOM 197 N CYS 59 11.499 12.497 47.445 1.00 0.00 N ATOM 198 CA CYS 59 12.463 11.523 47.028 1.00 0.00 C ATOM 199 C CYS 59 12.052 10.923 45.683 1.00 0.00 C ATOM 200 O CYS 59 12.884 10.735 44.795 1.00 0.00 O ATOM 201 N TYR 60 10.767 10.604 45.561 1.00 0.00 N ATOM 202 CA TYR 60 10.186 10.146 44.288 1.00 0.00 C ATOM 203 C TYR 60 10.425 11.183 43.195 1.00 0.00 C ATOM 204 O TYR 60 10.900 10.845 42.133 1.00 0.00 O ATOM 205 N LEU 61 10.145 12.455 43.474 1.00 0.00 N ATOM 206 CA LEU 61 10.443 13.473 42.497 1.00 0.00 C ATOM 207 C LEU 61 11.940 13.467 42.155 1.00 0.00 C ATOM 208 O LEU 61 12.314 13.617 40.978 1.00 0.00 O ATOM 209 N TYR 62 12.814 13.298 43.142 1.00 0.00 N ATOM 210 CA TYR 62 14.237 13.399 42.796 1.00 0.00 C ATOM 211 C TYR 62 14.715 12.180 42.030 1.00 0.00 C ATOM 212 O TYR 62 15.563 12.275 41.145 1.00 0.00 O ATOM 213 N LEU 63 14.139 11.047 42.370 1.00 0.00 N ATOM 214 CA LEU 63 14.390 9.795 41.683 1.00 0.00 C ATOM 215 C LEU 63 14.071 9.914 40.201 1.00 0.00 C ATOM 216 O LEU 63 14.864 9.508 39.362 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 216 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 37.33 87.7 106 85.5 124 ARMSMC SECONDARY STRUCTURE . . 10.41 98.4 64 100.0 64 ARMSMC SURFACE . . . . . . . . 43.66 85.1 74 86.0 86 ARMSMC BURIED . . . . . . . . 14.39 93.8 32 84.2 38 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 50 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 21 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.96 (Number of atoms: 54) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.96 54 85.7 63 CRMSCA CRN = ALL/NP . . . . . 0.0363 CRMSCA SECONDARY STRUCTURE . . 1.77 32 100.0 32 CRMSCA SURFACE . . . . . . . . 2.06 38 86.4 44 CRMSCA BURIED . . . . . . . . 1.70 16 84.2 19 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.94 216 69.0 313 CRMSMC SECONDARY STRUCTURE . . 1.75 128 80.0 160 CRMSMC SURFACE . . . . . . . . 2.03 152 69.7 218 CRMSMC BURIED . . . . . . . . 1.70 64 67.4 95 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 247 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 221 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 124 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 165 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 82 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.94 216 43.3 499 CRMSALL SECONDARY STRUCTURE . . 1.75 128 50.8 252 CRMSALL SURFACE . . . . . . . . 2.03 152 44.6 341 CRMSALL BURIED . . . . . . . . 1.70 64 40.5 158 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.825 1.000 0.500 54 85.7 63 ERRCA SECONDARY STRUCTURE . . 1.645 1.000 0.500 32 100.0 32 ERRCA SURFACE . . . . . . . . 1.931 1.000 0.500 38 86.4 44 ERRCA BURIED . . . . . . . . 1.572 1.000 0.500 16 84.2 19 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.803 1.000 0.500 216 69.0 313 ERRMC SECONDARY STRUCTURE . . 1.641 1.000 0.500 128 80.0 160 ERRMC SURFACE . . . . . . . . 1.895 1.000 0.500 152 69.7 218 ERRMC BURIED . . . . . . . . 1.582 1.000 0.500 64 67.4 95 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 247 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 221 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 124 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 165 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 82 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.803 1.000 0.500 216 43.3 499 ERRALL SECONDARY STRUCTURE . . 1.641 1.000 0.500 128 50.8 252 ERRALL SURFACE . . . . . . . . 1.895 1.000 0.500 152 44.6 341 ERRALL BURIED . . . . . . . . 1.582 1.000 0.500 64 40.5 158 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 4 35 49 54 54 54 63 DISTCA CA (P) 6.35 55.56 77.78 85.71 85.71 63 DISTCA CA (RMS) 0.71 1.45 1.73 1.96 1.96 DISTCA ALL (N) 18 146 199 216 216 216 499 DISTALL ALL (P) 3.61 29.26 39.88 43.29 43.29 499 DISTALL ALL (RMS) 0.73 1.47 1.73 1.94 1.94 DISTALL END of the results output