####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 105 ( 420), selected 102 , name T0574TS470_1-D1 # Molecule2: number of CA atoms 102 ( 749), selected 102 , name T0574-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0574TS470_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 92 25 - 116 4.88 7.17 LCS_AVERAGE: 82.93 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 28 - 56 1.98 8.64 LCS_AVERAGE: 19.40 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 50 - 65 0.92 7.30 LCS_AVERAGE: 9.66 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 102 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 25 D 25 3 13 92 2 6 24 32 44 56 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 26 A 26 8 13 92 3 8 19 24 38 42 61 68 69 70 74 78 81 83 84 85 86 86 88 91 LCS_GDT V 27 V 27 8 13 92 7 17 25 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT M 28 M 28 8 29 92 8 21 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 29 V 29 8 29 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT F 30 F 30 8 29 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 31 A 31 8 29 92 11 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT R 32 R 32 8 29 92 10 21 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT Q 33 Q 33 8 29 92 7 15 31 37 47 56 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT G 34 G 34 8 29 92 3 21 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT D 35 D 35 5 29 92 3 12 30 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT K 36 K 36 9 29 92 4 9 21 27 42 52 60 66 69 70 75 78 81 83 84 85 86 86 88 91 LCS_GDT G 37 G 37 12 29 92 4 13 21 34 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 38 S 38 12 29 92 5 13 21 31 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 39 V 39 12 29 92 4 12 23 33 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 40 S 40 12 29 92 3 6 21 28 42 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 41 V 41 12 29 92 3 12 21 27 40 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT G 42 G 42 12 29 92 3 13 21 24 34 49 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT D 43 D 43 12 29 92 3 11 21 28 40 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT K 44 K 44 12 29 92 3 13 21 28 40 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT H 45 H 45 12 29 92 3 7 21 28 38 54 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT F 46 F 46 12 29 92 5 13 21 31 43 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT R 47 R 47 12 29 92 5 13 23 33 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT T 48 T 48 12 29 92 5 13 21 36 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT Q 49 Q 49 15 29 92 5 15 28 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 50 A 50 16 29 92 10 21 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT F 51 F 51 16 29 92 7 21 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT K 52 K 52 16 29 92 6 18 31 37 44 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 53 V 53 16 29 92 8 21 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT R 54 R 54 16 29 92 11 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT L 55 L 55 16 29 92 12 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 56 V 56 16 29 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT N 57 N 57 16 25 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 58 A 58 16 25 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 59 A 59 16 25 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT K 60 K 60 16 25 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 61 S 61 16 25 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT E 62 E 62 16 24 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT I 63 I 63 16 24 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 64 S 64 16 24 92 9 22 30 37 47 56 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT L 65 L 65 16 24 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT K 66 K 66 15 24 92 3 17 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT N 67 N 67 13 24 92 4 4 21 33 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 68 S 68 5 24 92 4 4 13 24 42 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT C 69 C 69 5 24 92 4 6 19 26 36 49 63 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT L 70 L 70 13 17 92 4 9 12 14 31 38 45 56 65 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 71 V 71 13 17 92 7 12 13 14 16 26 37 56 65 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 72 A 72 13 17 92 7 12 13 14 15 21 45 58 65 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT Q 73 Q 73 13 17 92 7 12 13 14 15 26 44 57 65 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 74 S 74 13 17 92 7 12 13 14 17 26 35 55 61 66 70 77 81 83 84 85 86 86 88 91 LCS_GDT A 75 A 75 13 17 92 7 12 13 14 15 20 21 26 35 50 63 66 71 76 80 84 86 86 88 90 LCS_GDT A 76 A 76 13 17 92 7 12 13 14 15 20 30 38 44 60 67 69 74 81 83 85 86 86 88 91 LCS_GDT G 77 G 77 13 17 92 6 12 13 14 21 26 32 39 58 66 71 77 81 83 84 85 86 86 88 91 LCS_GDT Q 78 Q 78 13 17 92 7 12 13 14 15 26 32 55 62 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 79 S 79 13 17 92 5 12 13 14 15 23 41 58 65 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT F 80 F 80 13 17 92 7 12 13 14 15 33 46 55 65 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT R 81 R 81 13 17 92 5 12 13 14 18 31 44 50 63 70 74 78 81 83 84 85 86 86 88 91 LCS_GDT L 82 L 82 13 17 92 7 12 12 14 21 35 43 49 57 65 74 78 81 83 84 85 86 86 88 91 LCS_GDT D 83 D 83 5 17 92 3 4 7 7 17 26 29 36 41 47 51 58 63 68 75 81 84 86 88 91 LCS_GDT T 84 T 84 5 17 92 3 4 13 14 15 16 22 31 37 43 50 54 62 67 74 77 82 85 88 91 LCS_GDT V 85 V 85 4 17 92 3 4 4 5 6 13 14 19 27 32 37 47 61 65 69 73 79 84 87 91 LCS_GDT D 86 D 86 4 17 92 3 4 13 14 15 16 16 20 23 27 39 47 61 67 74 83 86 86 88 91 LCS_GDT E 87 E 87 4 6 92 3 4 4 18 28 40 45 53 60 68 72 78 81 83 84 85 86 86 88 91 LCS_GDT E 88 E 88 4 6 92 3 5 5 11 31 37 48 53 60 68 74 78 81 83 84 85 86 86 88 91 LCS_GDT L 89 L 89 3 6 92 3 4 6 20 25 29 33 40 45 53 60 76 80 83 84 85 86 86 88 91 LCS_GDT T 90 T 90 4 17 92 3 4 8 27 39 47 59 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 91 A 91 4 17 92 3 6 17 28 42 56 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT D 92 D 92 9 17 92 3 19 25 35 45 53 61 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT T 93 T 93 11 17 92 12 22 31 37 47 56 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT L 94 L 94 11 19 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT K 95 K 95 11 19 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT P 96 P 96 11 19 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT G 97 G 97 11 19 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 98 A 98 11 19 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 99 S 99 11 19 92 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 100 V 100 11 19 92 6 18 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT E 101 E 101 11 19 92 6 19 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT G 102 G 102 11 19 92 6 14 25 37 42 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT D 103 D 103 11 19 92 5 19 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 104 A 104 11 19 92 5 11 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT I 105 I 105 9 19 92 5 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT F 106 F 106 9 19 92 4 13 21 36 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 107 A 107 9 19 92 5 12 19 26 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT S 108 S 108 9 19 92 3 13 21 32 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT E 109 E 109 9 19 92 4 13 21 31 43 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT D 110 D 110 9 19 92 3 13 21 28 43 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT D 111 D 111 9 19 92 4 13 21 28 43 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT A 112 A 112 9 19 92 4 10 21 28 42 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT V 113 V 113 4 19 92 0 3 21 28 41 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 LCS_GDT Y 114 Y 114 0 6 92 0 1 4 9 11 35 42 45 60 66 73 78 80 82 84 85 86 86 88 91 LCS_GDT G 115 G 115 3 5 92 0 3 4 4 5 5 8 12 17 36 46 56 67 72 79 82 84 86 88 91 LCS_GDT A 116 A 116 3 5 92 0 3 4 4 5 5 8 21 22 35 42 55 67 72 79 82 84 86 88 91 LCS_GDT S 117 S 117 3 5 30 3 3 3 5 5 6 8 10 18 20 24 29 35 43 50 65 73 79 84 87 LCS_GDT L 118 L 118 3 5 29 3 3 4 5 5 6 8 14 18 20 26 30 41 49 62 71 77 83 84 88 LCS_GDT V 119 V 119 3 5 21 3 3 4 5 5 6 13 14 16 24 29 34 37 40 49 52 65 77 82 88 LCS_GDT R 120 R 120 3 5 12 3 3 3 5 5 6 7 10 12 14 19 23 30 38 42 46 57 72 78 82 LCS_GDT L 121 L 121 3 5 12 3 3 3 4 5 6 7 10 12 17 20 22 30 38 42 54 61 72 78 86 LCS_GDT S 122 S 122 3 5 12 3 3 3 4 4 6 7 10 12 14 17 19 23 24 29 35 41 44 55 57 LCS_GDT D 123 D 123 4 5 12 4 4 4 5 5 6 13 14 16 17 23 31 31 35 37 43 48 58 63 68 LCS_GDT R 124 R 124 4 5 12 4 4 4 6 7 10 13 15 18 20 26 31 31 38 42 49 52 58 63 68 LCS_GDT C 125 C 125 4 5 12 4 4 4 4 4 6 7 9 12 16 21 26 35 38 39 42 51 58 64 68 LCS_GDT K 126 K 126 4 5 12 4 4 4 4 4 6 7 9 12 16 20 23 25 38 42 48 51 57 64 69 LCS_AVERAGE LCS_A: 37.33 ( 9.66 19.40 82.93 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 22 31 37 47 57 64 68 69 71 75 78 81 83 84 85 86 86 88 91 GDT PERCENT_AT 14.71 21.57 30.39 36.27 46.08 55.88 62.75 66.67 67.65 69.61 73.53 76.47 79.41 81.37 82.35 83.33 84.31 84.31 86.27 89.22 GDT RMS_LOCAL 0.34 0.57 0.97 1.12 1.72 2.23 2.40 2.51 2.55 2.82 3.11 3.27 3.48 3.65 3.72 3.83 3.96 3.96 4.41 4.78 GDT RMS_ALL_AT 7.08 7.10 7.07 7.12 7.21 7.40 7.44 7.41 7.42 7.36 7.33 7.29 7.32 7.32 7.29 7.30 7.33 7.33 7.26 7.15 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 25 D 25 3.089 4 0.218 0.218 5.310 42.381 21.190 LGA A 26 A 26 3.753 1 0.672 0.672 3.753 55.595 44.476 LGA V 27 V 27 2.136 3 0.065 0.065 2.721 64.881 37.075 LGA M 28 M 28 1.432 4 0.018 0.018 1.450 81.429 40.714 LGA V 29 V 29 1.493 3 0.054 0.054 1.573 77.143 44.082 LGA F 30 F 30 1.747 7 0.029 0.029 1.826 72.857 26.494 LGA A 31 A 31 2.024 1 0.070 0.070 2.394 66.786 53.429 LGA R 32 R 32 2.468 7 0.094 0.094 3.001 59.167 21.515 LGA Q 33 Q 33 3.315 5 0.131 0.131 3.315 55.357 24.603 LGA G 34 G 34 2.462 0 0.249 0.249 4.371 54.048 54.048 LGA D 35 D 35 2.926 4 0.113 0.113 2.978 59.048 29.524 LGA K 36 K 36 4.579 5 0.541 0.541 4.579 42.024 18.677 LGA G 37 G 37 2.927 0 0.108 0.108 3.440 53.571 53.571 LGA S 38 S 38 1.970 2 0.086 0.086 2.088 70.833 47.222 LGA V 39 V 39 0.859 3 0.531 0.531 1.831 83.810 47.891 LGA S 40 S 40 2.025 2 0.084 0.084 2.921 62.976 41.984 LGA V 41 V 41 3.463 3 0.274 0.274 5.350 42.619 24.354 LGA G 42 G 42 4.325 0 0.510 0.510 4.587 37.262 37.262 LGA D 43 D 43 3.103 4 0.069 0.069 3.407 51.786 25.893 LGA K 44 K 44 3.384 5 0.147 0.147 3.444 51.786 23.016 LGA H 45 H 45 3.725 6 0.109 0.109 3.771 52.143 20.857 LGA F 46 F 46 1.850 7 0.111 0.111 2.404 70.833 25.758 LGA R 47 R 47 1.547 7 0.155 0.155 1.682 77.143 28.052 LGA T 48 T 48 2.690 3 0.100 0.100 2.952 59.048 33.741 LGA Q 49 Q 49 2.828 5 0.135 0.135 3.685 53.690 23.862 LGA A 50 A 50 2.503 1 0.065 0.065 2.688 59.048 47.238 LGA F 51 F 51 3.028 7 0.041 0.041 3.028 53.571 19.481 LGA K 52 K 52 3.002 5 0.115 0.115 3.071 55.476 24.656 LGA V 53 V 53 2.546 3 0.027 0.027 2.838 60.952 34.830 LGA R 54 R 54 1.714 7 0.034 0.034 2.085 70.833 25.758 LGA L 55 L 55 1.480 4 0.152 0.152 1.858 77.143 38.571 LGA V 56 V 56 1.194 3 0.038 0.038 1.194 81.429 46.531 LGA N 57 N 57 0.815 4 0.022 0.022 0.958 90.476 45.238 LGA A 58 A 58 0.996 1 0.034 0.034 0.996 90.476 72.381 LGA A 59 A 59 0.713 1 0.038 0.038 1.343 88.214 70.571 LGA K 60 K 60 1.250 5 0.126 0.126 1.612 81.548 36.243 LGA S 61 S 61 1.558 2 0.047 0.047 1.719 75.000 50.000 LGA E 62 E 62 2.200 5 0.040 0.040 2.200 66.786 29.683 LGA I 63 I 63 2.089 4 0.060 0.060 2.380 64.762 32.381 LGA S 64 S 64 2.990 2 0.068 0.068 2.990 57.143 38.095 LGA L 65 L 65 1.842 4 0.518 0.518 3.833 61.429 30.714 LGA K 66 K 66 1.245 5 0.052 0.052 2.096 75.119 33.386 LGA N 67 N 67 2.384 4 0.586 0.586 3.721 59.524 29.762 LGA S 68 S 68 2.713 2 0.053 0.053 3.233 55.357 36.905 LGA C 69 C 69 3.814 2 0.141 0.141 4.256 47.143 31.429 LGA L 70 L 70 5.740 4 0.094 0.094 6.486 20.476 10.238 LGA V 71 V 71 6.046 3 0.119 0.119 6.219 18.214 10.408 LGA A 72 A 72 6.808 1 0.101 0.101 7.068 12.619 10.095 LGA Q 73 Q 73 7.614 5 0.046 0.046 8.215 6.667 2.963 LGA S 74 S 74 9.274 2 0.064 0.064 9.912 1.310 0.873 LGA A 75 A 75 11.604 1 0.055 0.055 11.802 0.000 0.000 LGA A 76 A 76 11.067 1 0.110 0.110 11.207 0.000 0.000 LGA G 77 G 77 9.146 0 0.065 0.065 9.655 2.381 2.381 LGA Q 78 Q 78 8.648 5 0.073 0.073 8.952 3.810 1.693 LGA S 79 S 79 7.096 2 0.057 0.057 7.522 10.119 6.746 LGA F 80 F 80 6.961 7 0.139 0.139 6.961 15.238 5.541 LGA R 81 R 81 6.220 7 0.084 0.084 8.772 11.786 4.286 LGA L 82 L 82 7.215 4 0.032 0.032 8.098 9.762 4.881 LGA D 83 D 83 11.691 4 0.604 0.604 11.900 0.000 0.000 LGA T 84 T 84 12.847 3 0.089 0.089 13.757 0.000 0.000 LGA V 85 V 85 13.193 3 0.067 0.067 13.193 0.000 0.000 LGA D 86 D 86 11.817 4 0.225 0.225 12.663 1.071 0.536 LGA E 87 E 87 7.018 5 0.664 0.664 8.585 20.595 9.153 LGA E 88 E 88 6.885 5 0.368 0.368 6.936 13.333 5.926 LGA L 89 L 89 8.295 4 0.057 0.057 8.566 6.905 3.452 LGA T 90 T 90 4.045 3 0.635 0.635 4.729 54.048 30.884 LGA A 91 A 91 3.350 1 0.217 0.217 4.320 48.810 39.048 LGA D 92 D 92 3.825 4 0.635 0.635 3.825 52.857 26.429 LGA T 93 T 93 3.222 3 0.164 0.164 3.501 50.119 28.639 LGA L 94 L 94 1.968 4 0.057 0.057 2.233 70.833 35.417 LGA K 95 K 95 2.165 5 0.074 0.074 2.167 66.786 29.683 LGA P 96 P 96 2.123 3 0.072 0.072 2.252 64.762 37.007 LGA G 97 G 97 2.183 0 0.260 0.260 2.183 66.786 66.786 LGA A 98 A 98 2.224 1 0.053 0.053 2.351 70.952 56.762 LGA S 99 S 99 1.930 2 0.171 0.171 2.396 68.810 45.873 LGA V 100 V 100 1.745 3 0.113 0.113 1.754 72.857 41.633 LGA E 101 E 101 1.691 5 0.011 0.011 2.325 68.810 30.582 LGA G 102 G 102 3.113 0 0.075 0.075 3.113 59.167 59.167 LGA D 103 D 103 2.660 4 0.043 0.043 2.952 60.952 30.476 LGA A 104 A 104 2.953 1 0.247 0.247 2.976 57.143 45.714 LGA I 105 I 105 1.929 4 0.209 0.209 2.291 68.810 34.405 LGA F 106 F 106 3.084 7 0.019 0.019 3.084 57.262 20.823 LGA A 107 A 107 2.962 1 0.140 0.140 3.618 51.905 41.524 LGA S 108 S 108 1.865 2 0.059 0.059 2.068 70.833 47.222 LGA E 109 E 109 1.584 5 0.251 0.251 1.859 75.000 33.333 LGA D 110 D 110 1.967 4 0.144 0.144 1.967 72.857 36.429 LGA D 111 D 111 2.178 4 0.057 0.057 2.452 64.762 32.381 LGA A 112 A 112 2.526 1 0.647 0.647 2.526 69.286 55.429 LGA V 113 V 113 2.494 3 0.663 0.663 3.645 57.738 32.993 LGA Y 114 Y 114 7.659 8 0.662 0.662 9.904 8.452 2.817 LGA G 115 G 115 12.358 0 0.714 0.714 12.560 0.000 0.000 LGA A 116 A 116 12.802 1 0.273 0.273 14.928 0.000 0.000 LGA S 117 S 117 16.093 2 0.668 0.668 16.499 0.000 0.000 LGA L 118 L 118 14.771 4 0.041 0.041 15.060 0.000 0.000 LGA V 119 V 119 15.295 3 0.137 0.137 15.295 0.000 0.000 LGA R 120 R 120 17.031 7 0.111 0.111 17.031 0.000 0.000 LGA L 121 L 121 15.825 4 0.135 0.135 17.850 0.000 0.000 LGA S 122 S 122 20.341 2 0.633 0.633 20.341 0.000 0.000 LGA D 123 D 123 19.413 4 0.064 0.064 19.718 0.000 0.000 LGA R 124 R 124 20.169 7 0.501 0.501 20.169 0.000 0.000 LGA C 125 C 125 19.009 2 0.057 0.057 19.179 0.000 0.000 LGA K 126 K 126 17.796 6 0.363 0.363 19.839 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 102 408 408 100.00 749 408 54.47 102 SUMMARY(RMSD_GDC): 6.921 6.880 6.880 44.652 25.919 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 105 102 4.0 68 2.51 51.961 46.890 2.603 LGA_LOCAL RMSD: 2.513 Number of atoms: 68 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.409 Number of assigned atoms: 102 Std_ASGN_ATOMS RMSD: 6.921 Standard rmsd on all 102 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.588699 * X + -0.632736 * Y + 0.503069 * Z + 38.816528 Y_new = 0.089152 * X + 0.567721 * Y + 0.818379 * Z + -51.196087 Z_new = -0.803421 * X + 0.526629 * Y + -0.277806 * Z + 22.270786 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.991295 0.933019 2.056216 [DEG: 171.3886 53.4581 117.8125 ] ZXZ: 2.590424 1.852306 -0.990577 [DEG: 148.4204 106.1293 -56.7559 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0574TS470_1-D1 REMARK 2: T0574-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0574TS470_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 105 102 4.0 68 2.51 46.890 6.92 REMARK ---------------------------------------------------------- MOLECULE T0574TS470_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0574 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N ALA 22 9.121 17.998 17.980 1.00 6.51 N ATOM 2 CA ALA 22 8.249 16.787 18.030 1.00 6.51 C ATOM 3 C ALA 22 8.880 15.712 18.912 1.00 6.51 C ATOM 4 O ALA 22 8.425 15.470 20.031 1.00 6.51 O ATOM 5 N ALA 23 9.930 15.074 18.401 1.00 5.05 N ATOM 6 CA ALA 23 10.637 14.022 19.127 1.00 5.05 C ATOM 7 C ALA 23 11.705 14.584 20.065 1.00 5.05 C ATOM 8 O ALA 23 12.492 13.833 20.645 1.00 5.05 O ATOM 9 N PRO 24 11.728 15.904 20.216 1.00 4.55 N ATOM 10 CA PRO 24 12.711 16.557 21.068 1.00 4.55 C ATOM 11 C PRO 24 12.705 16.053 22.509 1.00 4.55 C ATOM 12 O PRO 24 13.723 16.114 23.197 1.00 4.55 O ATOM 13 N ASP 25 11.564 15.545 22.962 1.00 4.20 N ATOM 14 CA ASP 25 11.463 15.036 24.326 1.00 4.20 C ATOM 15 C ASP 25 11.684 13.531 24.425 1.00 4.20 C ATOM 16 O ASP 25 11.897 13.007 25.515 1.00 4.20 O ATOM 17 N ALA 26 11.632 12.837 23.291 1.00 3.11 N ATOM 18 CA ALA 26 11.791 11.385 23.279 1.00 3.11 C ATOM 19 C ALA 26 13.117 10.876 23.834 1.00 3.11 C ATOM 20 O ALA 26 13.209 9.719 24.242 1.00 3.11 O ATOM 21 N VAL 27 14.135 11.728 23.865 1.00 2.81 N ATOM 22 CA VAL 27 15.434 11.295 24.363 1.00 2.81 C ATOM 23 C VAL 27 15.972 12.104 25.543 1.00 2.81 C ATOM 24 O VAL 27 15.975 13.333 25.514 1.00 2.81 O ATOM 25 N MET 28 16.426 11.398 26.578 1.00 2.78 N ATOM 26 CA MET 28 16.984 12.031 27.769 1.00 2.78 C ATOM 27 C MET 28 18.451 11.634 27.910 1.00 2.78 C ATOM 28 O MET 28 18.801 10.468 27.751 1.00 2.78 O ATOM 29 N VAL 29 19.305 12.603 28.217 1.00 2.71 N ATOM 30 CA VAL 29 20.729 12.336 28.365 1.00 2.71 C ATOM 31 C VAL 29 21.227 12.526 29.806 1.00 2.71 C ATOM 32 O VAL 29 21.041 13.579 30.408 1.00 2.71 O ATOM 33 N PHE 30 21.854 11.489 30.350 1.00 2.80 N ATOM 34 CA PHE 30 22.394 11.519 31.708 1.00 2.80 C ATOM 35 C PHE 30 23.901 11.307 31.629 1.00 2.80 C ATOM 36 O PHE 30 24.387 10.547 30.796 1.00 2.80 O ATOM 37 N ALA 31 24.652 11.971 32.495 1.00 2.87 N ATOM 38 CA ALA 31 26.097 11.846 32.424 1.00 2.87 C ATOM 39 C ALA 31 26.829 11.902 33.752 1.00 2.87 C ATOM 40 O ALA 31 26.463 12.658 34.658 1.00 2.87 O ATOM 41 N ARG 32 27.869 11.082 33.859 1.00 3.04 N ATOM 42 CA ARG 32 28.724 11.071 35.033 1.00 3.04 C ATOM 43 C ARG 32 30.163 11.193 34.508 1.00 3.04 C ATOM 44 O ARG 32 30.459 10.784 33.378 1.00 3.04 O ATOM 45 N GLN 33 31.047 11.786 35.302 1.00 3.18 N ATOM 46 CA GLN 33 32.425 11.974 34.870 1.00 3.18 C ATOM 47 C GLN 33 33.430 11.523 35.907 1.00 3.18 C ATOM 48 O GLN 33 33.083 11.272 37.061 1.00 3.18 O ATOM 49 N GLY 34 34.691 11.458 35.492 1.00 3.54 N ATOM 50 CA GLY 34 35.752 11.010 36.375 1.00 3.54 C ATOM 51 C GLY 34 37.120 11.548 35.957 1.00 3.54 C ATOM 52 O GLY 34 37.462 11.565 34.762 1.00 3.54 O ATOM 53 N ASP 35 37.894 12.009 36.934 1.00 3.70 N ATOM 54 CA ASP 35 39.220 12.521 36.641 1.00 3.70 C ATOM 55 C ASP 35 40.110 11.302 36.573 1.00 3.70 C ATOM 56 O ASP 35 40.250 10.571 37.555 1.00 3.70 O ATOM 57 N LYS 36 40.709 11.071 35.417 1.00 3.87 N ATOM 58 CA LYS 36 41.557 9.908 35.273 1.00 3.87 C ATOM 59 C LYS 36 43.004 10.127 35.692 1.00 3.87 C ATOM 60 O LYS 36 43.458 9.548 36.676 1.00 3.87 O ATOM 61 N GLY 37 43.722 10.985 34.979 1.00 4.21 N ATOM 62 CA GLY 37 45.127 11.176 35.299 1.00 4.21 C ATOM 63 C GLY 37 45.677 12.479 34.752 1.00 4.21 C ATOM 64 O GLY 37 45.160 13.026 33.775 1.00 4.21 O ATOM 65 N SER 38 46.725 12.978 35.394 1.00 5.14 N ATOM 66 CA SER 38 47.374 14.205 34.953 1.00 5.14 C ATOM 67 C SER 38 48.298 13.839 33.784 1.00 5.14 C ATOM 68 O SER 38 49.004 12.831 33.839 1.00 5.14 O ATOM 69 N VAL 39 48.289 14.643 32.726 1.00 5.25 N ATOM 70 CA VAL 39 49.148 14.373 31.578 1.00 5.25 C ATOM 71 C VAL 39 50.069 15.556 31.334 1.00 5.25 C ATOM 72 O VAL 39 50.584 15.731 30.231 1.00 5.25 O ATOM 73 N SER 40 50.289 16.352 32.374 1.00 5.70 N ATOM 74 CA SER 40 51.121 17.547 32.264 1.00 5.70 C ATOM 75 C SER 40 52.621 17.394 31.979 1.00 5.70 C ATOM 76 O SER 40 53.284 16.486 32.480 1.00 5.70 O ATOM 77 N VAL 41 53.137 18.311 31.167 1.00 6.57 N ATOM 78 CA VAL 41 54.559 18.366 30.848 1.00 6.57 C ATOM 79 C VAL 41 55.048 19.553 31.688 1.00 6.57 C ATOM 80 O VAL 41 54.240 20.352 32.158 1.00 6.57 O ATOM 81 N GLY 42 56.366 19.692 31.884 1.00 7.11 N ATOM 82 CA GLY 42 56.923 20.793 32.680 1.00 7.11 C ATOM 83 C GLY 42 56.240 22.166 32.621 1.00 7.11 C ATOM 84 O GLY 42 56.250 22.895 33.614 1.00 7.11 O ATOM 85 N ASP 43 55.647 22.530 31.487 1.00 6.68 N ATOM 86 CA ASP 43 54.994 23.839 31.383 1.00 6.68 C ATOM 87 C ASP 43 53.654 23.844 30.659 1.00 6.68 C ATOM 88 O ASP 43 53.147 24.899 30.279 1.00 6.68 O ATOM 89 N LYS 44 53.083 22.665 30.467 1.00 5.44 N ATOM 90 CA LYS 44 51.801 22.553 29.792 1.00 5.44 C ATOM 91 C LYS 44 50.922 21.636 30.604 1.00 5.44 C ATOM 92 O LYS 44 51.071 20.417 30.559 1.00 5.44 O ATOM 93 N HIS 45 50.022 22.237 31.369 1.00 4.46 N ATOM 94 CA HIS 45 49.102 21.483 32.204 1.00 4.46 C ATOM 95 C HIS 45 48.096 20.740 31.340 1.00 4.46 C ATOM 96 O HIS 45 47.537 21.309 30.397 1.00 4.46 O ATOM 97 N PHE 46 47.880 19.469 31.661 1.00 3.96 N ATOM 98 CA PHE 46 46.923 18.632 30.944 1.00 3.96 C ATOM 99 C PHE 46 46.248 17.713 31.951 1.00 3.96 C ATOM 100 O PHE 46 46.909 17.109 32.796 1.00 3.96 O ATOM 101 N ARG 47 44.929 17.605 31.858 1.00 3.60 N ATOM 102 CA ARG 47 44.181 16.757 32.769 1.00 3.60 C ATOM 103 C ARG 47 43.231 15.865 31.980 1.00 3.60 C ATOM 104 O ARG 47 42.351 16.359 31.273 1.00 3.60 O ATOM 105 N THR 48 43.427 14.550 32.097 1.00 3.22 N ATOM 106 CA THR 48 42.604 13.572 31.387 1.00 3.22 C ATOM 107 C THR 48 41.343 13.184 32.161 1.00 3.22 C ATOM 108 O THR 48 41.410 12.696 33.290 1.00 3.22 O ATOM 109 N GLN 49 40.197 13.400 31.529 1.00 2.90 N ATOM 110 CA GLN 49 38.904 13.079 32.120 1.00 2.90 C ATOM 111 C GLN 49 38.176 12.051 31.269 1.00 2.90 C ATOM 112 O GLN 49 38.385 11.963 30.066 1.00 2.90 O ATOM 113 N ALA 50 37.317 11.273 31.903 1.00 2.79 N ATOM 114 CA ALA 50 36.505 10.323 31.176 1.00 2.79 C ATOM 115 C ALA 50 35.079 10.749 31.479 1.00 2.79 C ATOM 116 O ALA 50 34.810 11.333 32.540 1.00 2.79 O ATOM 117 N PHE 51 34.178 10.498 30.534 1.00 2.49 N ATOM 118 CA PHE 51 32.768 10.784 30.739 1.00 2.49 C ATOM 119 C PHE 51 31.964 9.607 30.189 1.00 2.49 C ATOM 120 O PHE 51 32.284 9.053 29.131 1.00 2.49 O ATOM 121 N LYS 52 30.950 9.205 30.948 1.00 2.33 N ATOM 122 CA LYS 52 30.084 8.096 30.571 1.00 2.33 C ATOM 123 C LYS 52 28.687 8.655 30.347 1.00 2.33 C ATOM 124 O LYS 52 28.022 9.099 31.284 1.00 2.33 O ATOM 125 N VAL 53 28.263 8.646 29.089 1.00 2.24 N ATOM 126 CA VAL 53 26.969 9.174 28.698 1.00 2.24 C ATOM 127 C VAL 53 25.940 8.057 28.583 1.00 2.24 C ATOM 128 O VAL 53 26.236 6.970 28.091 1.00 2.24 O ATOM 129 N ARG 54 24.732 8.333 29.056 1.00 2.20 N ATOM 130 CA ARG 54 23.633 7.381 28.967 1.00 2.20 C ATOM 131 C ARG 54 22.567 8.121 28.183 1.00 2.20 C ATOM 132 O ARG 54 22.137 9.209 28.575 1.00 2.20 O ATOM 133 N LEU 55 22.170 7.535 27.062 1.00 2.12 N ATOM 134 CA LEU 55 21.176 8.116 26.183 1.00 2.12 C ATOM 135 C LEU 55 19.939 7.228 26.198 1.00 2.12 C ATOM 136 O LEU 55 19.923 6.144 25.610 1.00 2.12 O ATOM 137 N VAL 56 18.905 7.691 26.888 1.00 2.17 N ATOM 138 CA VAL 56 17.664 6.936 27.018 1.00 2.17 C ATOM 139 C VAL 56 16.611 7.340 25.996 1.00 2.17 C ATOM 140 O VAL 56 16.276 8.522 25.857 1.00 2.17 O ATOM 141 N ASN 57 16.097 6.351 25.272 1.00 2.14 N ATOM 142 CA ASN 57 15.061 6.602 24.284 1.00 2.14 C ATOM 143 C ASN 57 13.720 6.220 24.892 1.00 2.14 C ATOM 144 O ASN 57 13.359 5.041 24.952 1.00 2.14 O ATOM 145 N ALA 58 12.996 7.236 25.353 1.00 2.42 N ATOM 146 CA ALA 58 11.695 7.054 25.972 1.00 2.42 C ATOM 147 C ALA 58 10.593 7.086 24.915 1.00 2.42 C ATOM 148 O ALA 58 9.408 6.968 25.235 1.00 2.42 O ATOM 149 N ALA 59 10.993 7.241 23.655 1.00 2.48 N ATOM 150 CA ALA 59 10.031 7.284 22.567 1.00 2.48 C ATOM 151 C ALA 59 9.372 5.942 22.293 1.00 2.48 C ATOM 152 O ALA 59 9.746 4.922 22.869 1.00 2.48 O ATOM 153 N LYS 60 8.382 5.939 21.409 1.00 2.87 N ATOM 154 CA LYS 60 7.679 4.710 21.068 1.00 2.87 C ATOM 155 C LYS 60 8.241 4.175 19.758 1.00 2.87 C ATOM 156 O LYS 60 7.684 3.265 19.150 1.00 2.87 O ATOM 157 N SER 61 9.364 4.744 19.341 1.00 2.70 N ATOM 158 CA SER 61 10.002 4.371 18.086 1.00 2.70 C ATOM 159 C SER 61 11.524 4.422 18.227 1.00 2.70 C ATOM 160 O SER 61 12.051 5.206 19.012 1.00 2.70 O ATOM 161 N GLU 62 12.227 3.580 17.477 1.00 2.42 N ATOM 162 CA GLU 62 13.684 3.543 17.548 1.00 2.42 C ATOM 163 C GLU 62 14.299 4.870 17.112 1.00 2.42 C ATOM 164 O GLU 62 13.745 5.571 16.265 1.00 2.42 O ATOM 165 N ILE 63 15.442 5.203 17.704 1.00 2.18 N ATOM 166 CA ILE 63 16.153 6.440 17.387 1.00 2.18 C ATOM 167 C ILE 63 17.638 6.140 17.185 1.00 2.18 C ATOM 168 O ILE 63 18.268 5.464 18.005 1.00 2.18 O ATOM 169 N SER 64 18.185 6.649 16.087 1.00 2.18 N ATOM 170 CA SER 64 19.578 6.430 15.750 1.00 2.18 C ATOM 171 C SER 64 20.420 7.684 15.937 1.00 2.18 C ATOM 172 O SER 64 20.102 8.751 15.398 1.00 2.18 O ATOM 173 N LEU 65 21.498 7.545 16.704 1.00 2.15 N ATOM 174 CA LEU 65 22.410 8.657 16.967 1.00 2.15 C ATOM 175 C LEU 65 23.388 8.774 15.800 1.00 2.15 C ATOM 176 O LEU 65 24.267 7.933 15.639 1.00 2.15 O ATOM 177 N LYS 66 23.240 9.813 14.987 1.00 2.52 N ATOM 178 CA LYS 66 24.120 9.978 13.836 1.00 2.52 C ATOM 179 C LYS 66 25.320 10.895 14.054 1.00 2.52 C ATOM 180 O LYS 66 26.430 10.574 13.624 1.00 2.52 O ATOM 181 N ASN 67 25.107 12.027 14.721 1.00 2.71 N ATOM 182 CA ASN 67 26.200 12.969 14.963 1.00 2.71 C ATOM 183 C ASN 67 26.271 13.509 16.384 1.00 2.71 C ATOM 184 O ASN 67 25.336 13.381 17.173 1.00 2.71 O ATOM 185 N SER 68 27.397 14.129 16.698 1.00 2.43 N ATOM 186 CA SER 68 27.579 14.741 18.000 1.00 2.43 C ATOM 187 C SER 68 28.238 16.082 17.756 1.00 2.43 C ATOM 188 O SER 68 28.924 16.278 16.752 1.00 2.43 O ATOM 189 N CYS 69 28.002 17.010 18.664 1.00 2.58 N ATOM 190 CA CYS 69 28.581 18.336 18.568 1.00 2.58 C ATOM 191 C CYS 69 28.819 18.796 19.992 1.00 2.58 C ATOM 192 O CYS 69 27.878 19.077 20.731 1.00 2.58 O ATOM 193 N LEU 70 30.090 18.849 20.373 1.00 2.77 N ATOM 194 CA LEU 70 30.487 19.244 21.711 1.00 2.77 C ATOM 195 C LEU 70 31.054 20.654 21.775 1.00 2.77 C ATOM 196 O LEU 70 31.562 21.184 20.789 1.00 2.77 O ATOM 197 N VAL 71 30.944 21.251 22.954 1.00 3.03 N ATOM 198 CA VAL 71 31.495 22.567 23.232 1.00 3.03 C ATOM 199 C VAL 71 32.176 22.322 24.568 1.00 3.03 C ATOM 200 O VAL 71 31.530 22.029 25.570 1.00 3.03 O ATOM 201 N ALA 72 33.494 22.414 24.561 1.00 2.90 N ATOM 202 CA ALA 72 34.295 22.168 25.741 1.00 2.90 C ATOM 203 C ALA 72 34.969 23.459 26.179 1.00 2.90 C ATOM 204 O ALA 72 35.635 24.123 25.381 1.00 2.90 O ATOM 205 N GLN 73 34.793 23.803 27.452 1.00 3.27 N ATOM 206 CA GLN 73 35.349 25.027 28.006 1.00 3.27 C ATOM 207 C GLN 73 36.214 24.797 29.239 1.00 3.27 C ATOM 208 O GLN 73 35.792 24.111 30.170 1.00 3.27 O ATOM 209 N SER 74 37.424 25.363 29.245 1.00 3.56 N ATOM 210 CA SER 74 38.301 25.218 30.404 1.00 3.56 C ATOM 211 C SER 74 37.932 26.309 31.412 1.00 3.56 C ATOM 212 O SER 74 37.072 27.149 31.137 1.00 3.56 O ATOM 213 N ALA 75 38.574 26.298 32.574 1.00 4.07 N ATOM 214 CA ALA 75 38.276 27.266 33.621 1.00 4.07 C ATOM 215 C ALA 75 38.336 28.731 33.192 1.00 4.07 C ATOM 216 O ALA 75 37.710 29.575 33.822 1.00 4.07 O ATOM 217 N ALA 76 39.066 29.026 32.117 1.00 4.09 N ATOM 218 CA ALA 76 39.225 30.397 31.632 1.00 4.09 C ATOM 219 C ALA 76 38.315 30.797 30.490 1.00 4.09 C ATOM 220 O ALA 76 38.468 31.875 29.922 1.00 4.09 O ATOM 221 N GLY 77 37.375 29.935 30.135 1.00 3.92 N ATOM 222 CA GLY 77 36.481 30.263 29.039 1.00 3.92 C ATOM 223 C GLY 77 37.020 29.898 27.664 1.00 3.92 C ATOM 224 O GLY 77 36.327 30.068 26.661 1.00 3.92 O ATOM 225 N GLN 78 38.253 29.404 27.609 1.00 3.68 N ATOM 226 CA GLN 78 38.855 29.012 26.338 1.00 3.68 C ATOM 227 C GLN 78 38.120 27.757 25.888 1.00 3.68 C ATOM 228 O GLN 78 38.171 26.724 26.555 1.00 3.68 O ATOM 229 N SER 79 37.428 27.845 24.759 1.00 3.38 N ATOM 230 CA SER 79 36.657 26.707 24.290 1.00 3.38 C ATOM 231 C SER 79 37.181 26.000 23.052 1.00 3.38 C ATOM 232 O SER 79 37.884 26.583 22.227 1.00 3.38 O ATOM 233 N PHE 80 36.822 24.725 22.946 1.00 3.17 N ATOM 234 CA PHE 80 37.172 23.879 21.813 1.00 3.17 C ATOM 235 C PHE 80 35.830 23.331 21.354 1.00 3.17 C ATOM 236 O PHE 80 34.878 23.297 22.125 1.00 3.17 O ATOM 237 N ARG 81 35.746 22.903 20.106 1.00 3.17 N ATOM 238 CA ARG 81 34.495 22.368 19.607 1.00 3.17 C ATOM 239 C ARG 81 34.792 21.062 18.910 1.00 3.17 C ATOM 240 O ARG 81 35.724 20.974 18.117 1.00 3.17 O ATOM 241 N LEU 82 34.018 20.032 19.220 1.00 3.14 N ATOM 242 CA LEU 82 34.222 18.739 18.590 1.00 3.14 C ATOM 243 C LEU 82 32.963 18.350 17.851 1.00 3.14 C ATOM 244 O LEU 82 31.876 18.379 18.417 1.00 3.14 O ATOM 245 N ASP 83 33.114 17.998 16.581 1.00 3.26 N ATOM 246 CA ASP 83 31.982 17.604 15.753 1.00 3.26 C ATOM 247 C ASP 83 32.371 16.340 14.992 1.00 3.26 C ATOM 248 O ASP 83 33.471 16.258 14.444 1.00 3.26 O ATOM 249 N THR 84 31.478 15.356 14.964 1.00 3.60 N ATOM 250 CA THR 84 31.776 14.124 14.259 1.00 3.60 C ATOM 251 C THR 84 30.581 13.213 14.084 1.00 3.60 C ATOM 252 O THR 84 29.478 13.527 14.519 1.00 3.60 O ATOM 253 N VAL 85 30.803 12.074 13.440 1.00 4.06 N ATOM 254 CA VAL 85 29.736 11.108 13.215 1.00 4.06 C ATOM 255 C VAL 85 29.684 10.132 14.384 1.00 4.06 C ATOM 256 O VAL 85 30.703 9.571 14.790 1.00 4.06 O ATOM 257 N ASP 86 28.490 9.967 14.936 1.00 4.10 N ATOM 258 CA ASP 86 28.278 9.061 16.048 1.00 4.10 C ATOM 259 C ASP 86 29.059 9.361 17.306 1.00 4.10 C ATOM 260 O ASP 86 29.413 10.508 17.586 1.00 4.10 O ATOM 261 N GLU 87 29.299 8.297 18.067 1.00 4.47 N ATOM 262 CA GLU 87 30.040 8.341 19.305 1.00 4.47 C ATOM 263 C GLU 87 30.934 7.118 19.298 1.00 4.47 C ATOM 264 O GLU 87 30.522 6.038 18.875 1.00 4.47 O ATOM 265 N GLU 88 32.161 7.298 19.767 1.00 4.25 N ATOM 266 CA GLU 88 33.165 6.246 19.811 1.00 4.25 C ATOM 267 C GLU 88 33.131 5.238 18.658 1.00 4.25 C ATOM 268 O GLU 88 33.185 4.020 18.865 1.00 4.25 O ATOM 269 N LEU 89 33.036 5.757 17.438 1.00 5.16 N ATOM 270 CA LEU 89 33.056 4.897 16.270 1.00 5.16 C ATOM 271 C LEU 89 31.762 4.306 15.751 1.00 5.16 C ATOM 272 O LEU 89 31.764 3.645 14.714 1.00 5.16 O ATOM 273 N THR 90 30.657 4.516 16.451 1.00 4.01 N ATOM 274 CA THR 90 29.398 3.980 15.963 1.00 4.01 C ATOM 275 C THR 90 28.247 4.959 16.035 1.00 4.01 C ATOM 276 O THR 90 28.273 5.925 16.800 1.00 4.01 O ATOM 277 N ALA 91 27.254 4.684 15.197 1.00 3.17 N ATOM 278 CA ALA 91 26.016 5.438 15.094 1.00 3.17 C ATOM 279 C ALA 91 25.008 4.390 15.572 1.00 3.17 C ATOM 280 O ALA 91 24.398 3.682 14.765 1.00 3.17 O ATOM 281 N ASP 92 24.831 4.269 16.897 1.00 2.81 N ATOM 282 CA ASP 92 23.913 3.295 17.496 1.00 2.81 C ATOM 283 C ASP 92 22.419 3.557 17.348 1.00 2.81 C ATOM 284 O ASP 92 21.960 4.702 17.361 1.00 2.81 O ATOM 285 N THR 93 21.659 2.480 17.187 1.00 2.67 N ATOM 286 CA THR 93 20.213 2.599 17.082 1.00 2.67 C ATOM 287 C THR 93 19.688 2.203 18.455 1.00 2.67 C ATOM 288 O THR 93 19.966 1.116 18.958 1.00 2.67 O ATOM 289 N LEU 94 18.967 3.124 19.079 1.00 2.69 N ATOM 290 CA LEU 94 18.419 2.896 20.408 1.00 2.69 C ATOM 291 C LEU 94 16.925 2.645 20.281 1.00 2.69 C ATOM 292 O LEU 94 16.158 3.555 19.948 1.00 2.69 O ATOM 293 N LYS 95 16.487 1.404 20.543 1.00 2.68 N ATOM 294 CA LYS 95 15.051 1.121 20.431 1.00 2.68 C ATOM 295 C LYS 95 14.280 1.763 21.587 1.00 2.68 C ATOM 296 O LYS 95 14.881 2.303 22.520 1.00 2.68 O ATOM 297 N PRO 96 12.942 1.721 21.540 1.00 2.99 N ATOM 298 CA PRO 96 12.148 2.318 22.622 1.00 2.99 C ATOM 299 C PRO 96 12.501 1.729 23.989 1.00 2.99 C ATOM 300 O PRO 96 12.991 0.606 24.080 1.00 2.99 O ATOM 301 N GLY 97 12.269 2.496 25.048 1.00 3.25 N ATOM 302 CA GLY 97 12.543 2.017 26.399 1.00 3.25 C ATOM 303 C GLY 97 13.927 1.362 26.545 1.00 3.25 C ATOM 304 O GLY 97 14.057 0.308 27.175 1.00 3.25 O ATOM 305 N ALA 98 14.957 1.973 25.968 1.00 3.29 N ATOM 306 CA ALA 98 16.302 1.412 26.074 1.00 3.29 C ATOM 307 C ALA 98 17.293 2.516 26.381 1.00 3.29 C ATOM 308 O ALA 98 17.144 3.633 25.902 1.00 3.29 O ATOM 309 N SER 99 18.298 2.189 27.187 1.00 3.20 N ATOM 310 CA SER 99 19.330 3.132 27.583 1.00 3.20 C ATOM 311 C SER 99 20.672 2.696 27.020 1.00 3.20 C ATOM 312 O SER 99 21.207 1.675 27.437 1.00 3.20 O ATOM 313 N VAL 100 21.211 3.468 26.080 1.00 2.94 N ATOM 314 CA VAL 100 22.504 3.155 25.483 1.00 2.94 C ATOM 315 C VAL 100 23.592 3.936 26.201 1.00 2.94 C ATOM 316 O VAL 100 23.533 5.163 26.291 1.00 2.94 O ATOM 317 N GLU 101 24.589 3.217 26.698 1.00 2.94 N ATOM 318 CA GLU 101 25.691 3.824 27.418 1.00 2.94 C ATOM 319 C GLU 101 27.015 3.675 26.685 1.00 2.94 C ATOM 320 O GLU 101 27.266 2.667 26.018 1.00 2.94 O ATOM 321 N GLY 102 27.861 4.690 26.817 1.00 3.21 N ATOM 322 CA GLY 102 29.178 4.680 26.201 1.00 3.21 C ATOM 323 C GLY 102 30.109 5.583 26.997 1.00 3.21 C ATOM 324 O GLY 102 29.672 6.480 27.728 1.00 3.21 O ATOM 325 N ASP 103 31.402 5.342 26.851 1.00 3.61 N ATOM 326 CA ASP 103 32.376 6.129 27.563 1.00 3.61 C ATOM 327 C ASP 103 33.438 6.660 26.619 1.00 3.61 C ATOM 328 O ASP 103 33.878 5.965 25.705 1.00 3.61 O ATOM 329 N ALA 104 33.825 7.911 26.835 1.00 4.33 N ATOM 330 CA ALA 104 34.868 8.546 26.047 1.00 4.33 C ATOM 331 C ALA 104 35.625 9.442 27.018 1.00 4.33 C ATOM 332 O ALA 104 35.547 9.235 28.216 1.00 4.33 O ATOM 333 N ILE 105 36.353 10.427 26.518 1.00 3.73 N ATOM 334 CA ILE 105 37.092 11.290 27.417 1.00 3.73 C ATOM 335 C ILE 105 37.612 12.546 26.749 1.00 3.73 C ATOM 336 O ILE 105 37.417 12.758 25.553 1.00 3.73 O ATOM 337 N PHE 106 38.278 13.387 27.528 1.00 3.66 N ATOM 338 CA PHE 106 38.833 14.611 26.985 1.00 3.66 C ATOM 339 C PHE 106 39.946 15.102 27.889 1.00 3.66 C ATOM 340 O PHE 106 39.973 14.772 29.076 1.00 3.66 O ATOM 341 N ALA 107 40.860 15.887 27.323 1.00 3.88 N ATOM 342 CA ALA 107 41.984 16.438 28.073 1.00 3.88 C ATOM 343 C ALA 107 41.835 17.950 28.213 1.00 3.88 C ATOM 344 O ALA 107 41.731 18.652 27.215 1.00 3.88 O ATOM 345 N SER 108 41.824 18.455 29.444 1.00 4.00 N ATOM 346 CA SER 108 41.699 19.898 29.652 1.00 4.00 C ATOM 347 C SER 108 43.020 20.510 30.078 1.00 4.00 C ATOM 348 O SER 108 43.858 19.827 30.660 1.00 4.00 O ATOM 349 N GLU 109 43.198 21.799 29.799 1.00 4.93 N ATOM 350 CA GLU 109 44.419 22.480 30.213 1.00 4.93 C ATOM 351 C GLU 109 44.251 23.077 31.612 1.00 4.93 C ATOM 352 O GLU 109 45.172 23.696 32.142 1.00 4.93 O ATOM 353 N ASP 110 43.068 22.890 32.198 1.00 5.84 N ATOM 354 CA ASP 110 42.770 23.355 33.567 1.00 5.84 C ATOM 355 C ASP 110 42.063 22.217 34.312 1.00 5.84 C ATOM 356 O ASP 110 41.411 21.390 33.690 1.00 5.84 O ATOM 357 N ASP 111 42.202 22.154 35.648 1.00 6.08 N ATOM 358 CA ASP 111 41.563 21.096 36.439 1.00 6.08 C ATOM 359 C ASP 111 40.045 21.201 36.539 1.00 6.08 C ATOM 360 O ASP 111 39.389 20.355 37.155 1.00 6.08 O ATOM 361 N ALA 112 39.489 22.247 35.941 1.00 6.04 N ATOM 362 CA ALA 112 38.047 22.438 35.937 1.00 6.04 C ATOM 363 C ALA 112 37.610 22.896 34.566 1.00 6.04 C ATOM 364 O ALA 112 38.338 23.620 33.888 1.00 6.04 O ATOM 365 N VAL 113 36.412 22.483 34.172 1.00 5.80 N ATOM 366 CA VAL 113 35.880 22.861 32.878 1.00 5.80 C ATOM 367 C VAL 113 34.444 22.397 32.747 1.00 5.80 C ATOM 368 O VAL 113 33.923 21.703 33.627 1.00 5.80 O ATOM 369 N TYR 114 33.813 22.766 31.639 1.00 5.75 N ATOM 370 CA TYR 114 32.424 22.407 31.375 1.00 5.75 C ATOM 371 C TYR 114 32.217 21.867 29.951 1.00 5.75 C ATOM 372 O TYR 114 32.900 22.266 29.004 1.00 5.75 O ATOM 373 N GLY 115 29.043 20.610 27.018 1.00 6.91 N ATOM 374 CA GLY 115 27.633 20.616 26.642 1.00 6.91 C ATOM 375 C GLY 115 27.555 20.510 25.124 1.00 6.91 C ATOM 376 O GLY 115 28.573 20.624 24.444 1.00 6.91 O ATOM 377 N ALA 116 26.361 20.273 24.594 1.00 6.51 N ATOM 378 CA ALA 116 26.215 20.155 23.153 1.00 6.51 C ATOM 379 C ALA 116 24.954 19.421 22.736 1.00 6.51 C ATOM 380 O ALA 116 23.946 19.444 23.448 1.00 6.51 O ATOM 381 N SER 117 25.003 18.772 21.577 1.00 5.07 N ATOM 382 CA SER 117 23.852 18.040 21.076 1.00 5.07 C ATOM 383 C SER 117 24.254 16.828 20.255 1.00 5.07 C ATOM 384 O SER 117 25.380 16.728 19.776 1.00 5.07 O ATOM 385 N LEU 118 23.310 15.907 20.115 1.00 5.85 N ATOM 386 CA LEU 118 23.488 14.696 19.334 1.00 5.85 C ATOM 387 C LEU 118 22.499 14.813 18.188 1.00 5.85 C ATOM 388 O LEU 118 21.333 15.150 18.409 1.00 5.85 O ATOM 389 N VAL 119 22.950 14.560 16.967 1.00 7.09 N ATOM 390 CA VAL 119 22.043 14.633 15.836 1.00 7.09 C ATOM 391 C VAL 119 21.336 13.297 15.705 1.00 7.09 C ATOM 392 O VAL 119 21.935 12.327 15.247 1.00 7.09 O ATOM 393 N ARG 120 18.110 10.654 14.413 1.00 9.33 N ATOM 394 CA ARG 120 17.218 10.402 13.290 1.00 9.33 C ATOM 395 C ARG 120 16.324 9.250 13.734 1.00 9.33 C ATOM 396 O ARG 120 16.803 8.274 14.318 1.00 9.33 O ATOM 397 N LEU 121 15.023 9.374 13.483 1.00 11.14 N ATOM 398 CA LEU 121 14.071 8.345 13.885 1.00 11.14 C ATOM 399 C LEU 121 13.811 7.319 12.792 1.00 11.14 C ATOM 400 O LEU 121 14.148 7.531 11.626 1.00 11.14 O ATOM 401 N SER 122 13.212 6.202 13.192 1.00 12.82 N ATOM 402 CA SER 122 12.864 5.127 12.273 1.00 12.82 C ATOM 403 C SER 122 12.078 5.730 11.112 1.00 12.82 C ATOM 404 O SER 122 12.252 5.336 9.957 1.00 12.82 O ATOM 405 N ASP 123 11.217 6.693 11.432 1.00 12.97 N ATOM 406 CA ASP 123 10.392 7.357 10.426 1.00 12.97 C ATOM 407 C ASP 123 11.214 8.276 9.528 1.00 12.97 C ATOM 408 O ASP 123 10.673 8.883 8.602 1.00 12.97 O ATOM 409 N ARG 124 12.512 8.380 9.810 1.00 11.55 N ATOM 410 CA ARG 124 13.394 9.213 9.006 1.00 11.55 C ATOM 411 C ARG 124 13.540 10.662 9.437 1.00 11.55 C ATOM 412 O ARG 124 14.361 11.394 8.884 1.00 11.55 O ATOM 413 N CYS 125 12.760 11.085 10.428 1.00 9.20 N ATOM 414 CA CYS 125 12.823 12.463 10.889 1.00 9.20 C ATOM 415 C CYS 125 14.062 12.755 11.729 1.00 9.20 C ATOM 416 O CYS 125 14.455 11.959 12.586 1.00 9.20 O ATOM 417 N LYS 126 14.661 13.913 11.472 1.00 9.20 N ATOM 418 CA LYS 126 15.861 14.360 12.172 1.00 9.20 C ATOM 419 C LYS 126 15.554 15.343 13.299 1.00 9.20 C ATOM 420 O LYS 126 14.784 16.284 13.121 1.00 9.20 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 408 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.09 57.9 202 100.0 202 ARMSMC SECONDARY STRUCTURE . . 47.44 61.4 114 100.0 114 ARMSMC SURFACE . . . . . . . . 60.64 54.9 142 100.0 142 ARMSMC BURIED . . . . . . . . 58.76 65.0 60 100.0 60 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 67 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 48 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 39 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 28 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.92 (Number of atoms: 102) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.92 102 100.0 102 CRMSCA CRN = ALL/NP . . . . . 0.0679 CRMSCA SECONDARY STRUCTURE . . 6.61 57 100.0 57 CRMSCA SURFACE . . . . . . . . 7.31 72 100.0 72 CRMSCA BURIED . . . . . . . . 5.90 30 100.0 30 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.88 408 81.1 503 CRMSMC SECONDARY STRUCTURE . . 6.62 228 80.9 282 CRMSMC SURFACE . . . . . . . . 7.26 288 81.4 354 CRMSMC BURIED . . . . . . . . 5.86 120 80.5 149 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 341 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 287 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 208 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 250 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 91 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.88 408 54.5 749 CRMSALL SECONDARY STRUCTURE . . 6.62 228 52.3 436 CRMSALL SURFACE . . . . . . . . 7.26 288 53.5 538 CRMSALL BURIED . . . . . . . . 5.86 120 56.9 211 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.198 0.228 0.178 102 100.0 102 ERRCA SECONDARY STRUCTURE . . 2.318 0.260 0.215 57 100.0 57 ERRCA SURFACE . . . . . . . . 2.389 0.234 0.178 72 100.0 72 ERRCA BURIED . . . . . . . . 1.738 0.212 0.176 30 100.0 30 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.196 0.230 0.184 408 81.1 503 ERRMC SECONDARY STRUCTURE . . 2.329 0.262 0.218 228 80.9 282 ERRMC SURFACE . . . . . . . . 2.357 0.233 0.182 288 81.4 354 ERRMC BURIED . . . . . . . . 1.810 0.224 0.189 120 80.5 149 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 341 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 287 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 208 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 250 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 91 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.196 0.230 0.184 408 54.5 749 ERRALL SECONDARY STRUCTURE . . 2.329 0.262 0.218 228 52.3 436 ERRALL SURFACE . . . . . . . . 2.357 0.233 0.182 288 53.5 538 ERRALL BURIED . . . . . . . . 1.810 0.224 0.189 120 56.9 211 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 3 26 40 58 87 102 102 DISTCA CA (P) 2.94 25.49 39.22 56.86 85.29 102 DISTCA CA (RMS) 0.89 1.45 1.83 2.74 4.63 DISTCA ALL (N) 11 109 165 240 348 408 749 DISTALL ALL (P) 1.47 14.55 22.03 32.04 46.46 749 DISTALL ALL (RMS) 0.88 1.45 1.83 2.79 4.56 DISTALL END of the results output