####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 170), selected 21 , name T0574TS301_1-D1 # Molecule2: number of CA atoms 102 ( 749), selected 21 , name T0574-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0574TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 43 - 63 2.77 2.77 LCS_AVERAGE: 20.59 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 46 - 63 1.76 3.53 LCS_AVERAGE: 17.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 49 - 63 0.90 5.37 LCS_AVERAGE: 12.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 43 D 43 3 10 21 0 3 3 3 5 8 10 10 15 18 21 21 21 21 21 21 21 21 21 21 LCS_GDT K 44 K 44 3 17 21 1 3 6 8 14 16 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT H 45 H 45 5 17 21 3 4 5 10 15 16 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT F 46 F 46 8 18 21 4 6 9 12 15 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT R 47 R 47 8 18 21 4 7 10 14 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT T 48 T 48 8 18 21 4 7 10 14 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT Q 49 Q 49 15 18 21 4 7 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 50 A 50 15 18 21 3 11 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT F 51 F 51 15 18 21 3 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT K 52 K 52 15 18 21 5 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT V 53 V 53 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT R 54 R 54 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT L 55 L 55 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT V 56 V 56 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT N 57 N 57 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 58 A 58 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT A 59 A 59 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT K 60 K 60 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT S 61 S 61 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT E 62 E 62 15 18 21 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_GDT I 63 I 63 15 18 21 9 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 LCS_AVERAGE LCS_A: 16.64 ( 12.14 17.18 20.59 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 13 14 15 17 18 18 20 20 20 21 21 21 21 21 21 21 21 21 21 GDT PERCENT_AT 9.80 12.75 13.73 14.71 16.67 17.65 17.65 19.61 19.61 19.61 20.59 20.59 20.59 20.59 20.59 20.59 20.59 20.59 20.59 20.59 GDT RMS_LOCAL 0.32 0.48 0.65 0.90 1.51 1.76 1.76 2.41 2.41 2.41 2.77 2.77 2.77 2.77 2.77 2.77 2.77 2.77 2.77 2.77 GDT RMS_ALL_AT 5.66 6.10 5.87 5.37 4.02 3.53 3.53 2.86 2.86 2.86 2.77 2.77 2.77 2.77 2.77 2.77 2.77 2.77 2.77 2.77 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 43 D 43 7.421 0 0.212 0.236 11.092 12.857 7.024 LGA K 44 K 44 4.906 0 0.525 0.429 10.312 38.333 21.376 LGA H 45 H 45 3.675 0 0.476 1.221 4.251 54.524 49.143 LGA F 46 F 46 2.177 0 0.193 1.208 4.249 68.810 61.515 LGA R 47 R 47 1.050 0 0.146 1.128 4.049 81.429 71.688 LGA T 48 T 48 2.129 0 0.055 1.057 3.629 66.786 64.014 LGA Q 49 Q 49 2.539 0 0.105 1.254 5.717 57.262 45.397 LGA A 50 A 50 2.261 0 0.061 0.064 2.711 60.952 63.333 LGA F 51 F 51 3.114 0 0.079 0.121 4.342 55.357 45.455 LGA K 52 K 52 2.736 0 0.088 0.888 3.129 60.952 61.587 LGA V 53 V 53 2.193 0 0.030 0.058 2.444 68.810 67.075 LGA R 54 R 54 1.573 0 0.052 0.801 3.563 72.857 66.580 LGA L 55 L 55 1.294 0 0.087 1.350 4.702 81.429 64.881 LGA V 56 V 56 1.040 0 0.026 0.041 1.236 88.214 85.306 LGA N 57 N 57 0.813 0 0.095 0.106 1.536 83.810 82.679 LGA A 58 A 58 1.395 0 0.075 0.088 1.702 79.286 78.000 LGA A 59 A 59 1.002 0 0.064 0.092 1.914 81.548 81.524 LGA K 60 K 60 1.395 4 0.119 0.126 1.923 77.143 43.333 LGA S 61 S 61 2.013 0 0.086 0.091 2.585 64.881 67.540 LGA E 62 E 62 3.210 0 0.041 0.350 5.305 51.786 43.175 LGA I 63 I 63 3.133 3 - - 4.412 25.000 30.536 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 82 97.62 169 166 98.22 102 SUMMARY(RMSD_GDC): 2.774 2.685 3.357 13.059 11.776 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 102 4.0 20 2.41 16.912 17.444 0.796 LGA_LOCAL RMSD: 2.413 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.858 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 2.774 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.163400 * X + 0.258867 * Y + -0.951992 * Z + 18.987127 Y_new = -0.655540 * X + -0.692640 * Y + -0.300861 * Z + 4.650060 Z_new = -0.737270 * X + 0.673230 * Y + 0.056520 * Z + 29.875780 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.326514 0.829021 1.487039 [DEG: -76.0036 47.4994 85.2011 ] ZXZ: -1.264696 1.514246 -0.830770 [DEG: -72.4618 86.7599 -47.5996 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0574TS301_1-D1 REMARK 2: T0574-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0574TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 102 4.0 20 2.41 17.444 2.77 REMARK ---------------------------------------------------------- MOLECULE T0574TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0574 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N ASP 43 51.505 20.103 35.989 1.00 0.00 N ATOM 3 CA ASP 43 52.674 20.856 35.667 1.00 0.00 C ATOM 4 CB ASP 43 53.936 20.069 36.029 1.00 0.00 C ATOM 5 CG ASP 43 54.154 19.976 37.526 1.00 0.00 C ATOM 6 OD1 ASP 43 53.501 20.737 38.270 1.00 0.00 O ATOM 7 OD2 ASP 43 54.979 19.141 37.954 1.00 0.00 O ATOM 8 O ASP 43 53.211 22.386 33.956 1.00 0.00 O ATOM 9 C ASP 43 52.808 21.283 34.233 1.00 0.00 C ATOM 10 N LYS 44 52.523 20.381 33.337 1.00 0.00 N ATOM 11 CA LYS 44 52.534 20.631 31.906 1.00 0.00 C ATOM 12 CB LYS 44 53.052 19.405 31.151 1.00 0.00 C ATOM 13 CG LYS 44 54.508 19.072 31.434 1.00 0.00 C ATOM 14 CD LYS 44 54.962 17.864 30.630 1.00 0.00 C ATOM 15 CE LYS 44 56.421 17.535 30.907 1.00 0.00 C ATOM 16 NZ LYS 44 56.878 16.348 30.132 1.00 0.00 N ATOM 17 O LYS 44 50.882 20.759 30.207 1.00 0.00 O ATOM 18 C LYS 44 51.141 21.012 31.385 1.00 0.00 C ATOM 19 N HIS 45 50.234 21.512 32.244 1.00 0.00 N ATOM 20 CA HIS 45 48.895 21.887 31.797 1.00 0.00 C ATOM 21 CB HIS 45 48.943 23.190 30.996 1.00 0.00 C ATOM 22 CG HIS 45 49.463 24.358 31.775 1.00 0.00 C ATOM 23 CD2 HIS 45 50.654 25.194 31.723 1.00 0.00 C ATOM 24 ND1 HIS 45 48.778 24.910 32.836 1.00 0.00 N ATOM 25 CE1 HIS 45 49.491 25.938 33.331 1.00 0.00 C ATOM 26 NE2 HIS 45 50.617 26.114 32.667 1.00 0.00 N ATOM 27 O HIS 45 47.727 21.120 29.882 1.00 0.00 O ATOM 28 C HIS 45 48.198 20.866 30.968 1.00 0.00 C ATOM 29 N PHE 46 48.106 19.673 31.499 1.00 0.00 N ATOM 30 CA PHE 46 47.430 18.619 30.839 1.00 0.00 C ATOM 31 CB PHE 46 48.435 17.628 30.245 1.00 0.00 C ATOM 32 CG PHE 46 47.797 16.517 29.461 1.00 0.00 C ATOM 33 CD1 PHE 46 47.210 16.766 28.232 1.00 0.00 C ATOM 34 CD2 PHE 46 47.788 15.224 29.949 1.00 0.00 C ATOM 35 CE1 PHE 46 46.625 15.743 27.510 1.00 0.00 C ATOM 36 CE2 PHE 46 47.202 14.200 29.228 1.00 0.00 C ATOM 37 CZ PHE 46 46.621 14.455 28.013 1.00 0.00 C ATOM 38 O PHE 46 46.978 17.399 32.887 1.00 0.00 O ATOM 39 C PHE 46 46.528 17.991 31.898 1.00 0.00 C ATOM 40 N ARG 47 45.222 18.140 31.678 1.00 0.00 N ATOM 41 CA ARG 47 44.199 17.702 32.627 1.00 0.00 C ATOM 42 CB ARG 47 43.484 18.909 33.237 1.00 0.00 C ATOM 43 CG ARG 47 44.381 19.801 34.081 1.00 0.00 C ATOM 44 CD ARG 47 44.790 19.110 35.370 1.00 0.00 C ATOM 45 NE ARG 47 45.601 19.978 36.225 1.00 0.00 N ATOM 46 CZ ARG 47 46.919 20.109 36.116 1.00 0.00 C ATOM 47 NH1 ARG 47 47.573 20.923 36.935 1.00 0.00 H ATOM 48 NH2 ARG 47 47.579 19.428 35.191 1.00 0.00 H ATOM 49 O ARG 47 42.620 17.287 30.951 1.00 0.00 O ATOM 50 C ARG 47 43.248 16.800 31.892 1.00 0.00 C ATOM 51 N THR 48 43.201 15.496 32.269 1.00 0.00 N ATOM 52 CA THR 48 42.483 14.472 31.532 1.00 0.00 C ATOM 53 CB THR 48 43.377 13.251 31.247 1.00 0.00 C ATOM 54 CG2 THR 48 42.598 12.187 30.489 1.00 0.00 C ATOM 55 OG1 THR 48 44.498 13.652 30.450 1.00 0.00 O ATOM 56 O THR 48 41.305 13.722 33.504 1.00 0.00 O ATOM 57 C THR 48 41.246 14.029 32.290 1.00 0.00 C ATOM 58 N GLN 49 40.120 13.971 31.539 1.00 0.00 N ATOM 59 CA GLN 49 38.818 13.659 32.090 1.00 0.00 C ATOM 60 CB GLN 49 37.897 14.878 32.009 1.00 0.00 C ATOM 61 CG GLN 49 38.358 16.060 32.847 1.00 0.00 C ATOM 62 CD GLN 49 37.402 17.235 32.773 1.00 0.00 C ATOM 63 OE1 GLN 49 36.841 17.527 31.716 1.00 0.00 O ATOM 64 NE2 GLN 49 37.212 17.914 33.899 1.00 0.00 N ATOM 65 O GLN 49 38.369 12.264 30.152 1.00 0.00 O ATOM 66 C GLN 49 38.192 12.462 31.350 1.00 0.00 C ATOM 67 N ALA 50 37.477 11.635 32.099 1.00 0.00 N ATOM 68 CA ALA 50 36.752 10.543 31.515 1.00 0.00 C ATOM 69 CB ALA 50 37.077 9.243 32.237 1.00 0.00 C ATOM 70 O ALA 50 34.920 11.695 32.537 1.00 0.00 O ATOM 71 C ALA 50 35.269 10.951 31.624 1.00 0.00 C ATOM 72 N PHE 51 34.443 10.622 30.632 1.00 0.00 N ATOM 73 CA PHE 51 32.986 10.807 30.724 1.00 0.00 C ATOM 74 CB PHE 51 32.534 11.960 29.825 1.00 0.00 C ATOM 75 CG PHE 51 33.109 13.292 30.214 1.00 0.00 C ATOM 76 CD1 PHE 51 34.315 13.722 29.692 1.00 0.00 C ATOM 77 CD2 PHE 51 32.442 14.115 31.104 1.00 0.00 C ATOM 78 CE1 PHE 51 34.843 14.948 30.050 1.00 0.00 C ATOM 79 CE2 PHE 51 32.969 15.342 31.462 1.00 0.00 C ATOM 80 CZ PHE 51 34.165 15.758 30.939 1.00 0.00 C ATOM 81 O PHE 51 32.496 8.939 29.420 1.00 0.00 O ATOM 82 C PHE 51 32.181 9.600 30.371 1.00 0.00 C ATOM 83 N LYS 52 31.110 9.359 31.128 1.00 0.00 N ATOM 84 CA LYS 52 30.256 8.218 30.918 1.00 0.00 C ATOM 85 CB LYS 52 30.261 7.311 32.150 1.00 0.00 C ATOM 86 CG LYS 52 29.420 6.054 32.001 1.00 0.00 C ATOM 87 CD LYS 52 29.492 5.189 33.247 1.00 0.00 C ATOM 88 CE LYS 52 28.625 3.948 33.111 1.00 0.00 C ATOM 89 NZ LYS 52 28.658 3.107 34.339 1.00 0.00 N ATOM 90 O LYS 52 28.218 9.434 31.344 1.00 0.00 O ATOM 91 C LYS 52 28.806 8.680 30.588 1.00 0.00 C ATOM 92 N VAL 53 28.269 8.333 29.417 1.00 0.00 N ATOM 93 CA VAL 53 27.070 8.945 28.965 1.00 0.00 C ATOM 94 CB VAL 53 27.305 9.763 27.679 1.00 0.00 C ATOM 95 CG1 VAL 53 25.995 10.346 27.174 1.00 0.00 C ATOM 96 CG2 VAL 53 28.324 10.863 27.925 1.00 0.00 C ATOM 97 O VAL 53 26.331 6.863 28.192 1.00 0.00 O ATOM 98 C VAL 53 26.037 7.887 28.746 1.00 0.00 C ATOM 99 N ARG 54 24.811 8.169 29.125 1.00 0.00 N ATOM 100 CA ARG 54 23.669 7.249 29.015 1.00 0.00 C ATOM 101 CB ARG 54 23.148 6.872 30.403 1.00 0.00 C ATOM 102 CG ARG 54 21.975 5.907 30.384 1.00 0.00 C ATOM 103 CD ARG 54 21.562 5.512 31.792 1.00 0.00 C ATOM 104 NE ARG 54 20.408 4.616 31.794 1.00 0.00 N ATOM 105 CZ ARG 54 19.857 4.109 32.891 1.00 0.00 C ATOM 106 NH1 ARG 54 18.809 3.303 32.796 1.00 0.00 H ATOM 107 NH2 ARG 54 20.356 4.409 34.084 1.00 0.00 H ATOM 108 O ARG 54 22.428 9.194 28.387 1.00 0.00 O ATOM 109 C ARG 54 22.658 8.010 28.164 1.00 0.00 C ATOM 110 N LEU 55 22.130 7.327 27.156 1.00 0.00 N ATOM 111 CA LEU 55 21.157 7.816 26.202 1.00 0.00 C ATOM 112 CB LEU 55 21.745 7.810 24.788 1.00 0.00 C ATOM 113 CG LEU 55 20.809 8.259 23.664 1.00 0.00 C ATOM 114 CD1 LEU 55 20.399 9.712 23.853 1.00 0.00 C ATOM 115 CD2 LEU 55 21.469 8.069 22.307 1.00 0.00 C ATOM 116 O LEU 55 20.068 5.709 26.053 1.00 0.00 O ATOM 117 C LEU 55 19.954 6.903 26.350 1.00 0.00 C ATOM 118 N VAL 56 18.857 7.439 26.897 1.00 0.00 N ATOM 119 CA VAL 56 17.601 6.667 27.128 1.00 0.00 C ATOM 120 CB VAL 56 17.078 6.858 28.564 1.00 0.00 C ATOM 121 CG1 VAL 56 15.769 6.109 28.758 1.00 0.00 C ATOM 122 CG2 VAL 56 18.115 6.395 29.575 1.00 0.00 C ATOM 123 O VAL 56 16.298 8.341 25.930 1.00 0.00 O ATOM 124 C VAL 56 16.553 7.098 26.104 1.00 0.00 C ATOM 125 N ASN 57 15.991 6.139 25.388 1.00 0.00 N ATOM 126 CA ASN 57 15.029 6.423 24.406 1.00 0.00 C ATOM 127 CB ASN 57 15.115 5.410 23.262 1.00 0.00 C ATOM 128 CG ASN 57 14.061 5.642 22.198 1.00 0.00 C ATOM 129 ND2 ASN 57 14.072 4.806 21.165 1.00 0.00 N ATOM 130 OD1 ASN 57 13.247 6.559 22.304 1.00 0.00 O ATOM 131 O ASN 57 13.343 5.338 25.731 1.00 0.00 O ATOM 132 C ASN 57 13.735 6.395 25.183 1.00 0.00 C ATOM 133 N ALA 58 13.134 7.576 25.336 1.00 0.00 N ATOM 134 CA ALA 58 11.808 7.645 25.944 1.00 0.00 C ATOM 135 CB ALA 58 11.732 8.810 26.920 1.00 0.00 C ATOM 136 O ALA 58 9.575 8.182 25.378 1.00 0.00 O ATOM 137 C ALA 58 10.672 7.779 24.988 1.00 0.00 C ATOM 138 N ALA 59 10.842 7.379 23.750 1.00 0.00 N ATOM 139 CA ALA 59 9.778 7.614 22.724 1.00 0.00 C ATOM 140 CB ALA 59 10.392 8.142 21.437 1.00 0.00 C ATOM 141 O ALA 59 9.309 5.319 23.205 1.00 0.00 O ATOM 142 C ALA 59 9.033 6.294 22.496 1.00 0.00 C ATOM 143 N LYS 60 8.148 6.219 21.496 1.00 0.00 N ATOM 144 CA LYS 60 7.590 4.869 21.244 1.00 0.00 C ATOM 145 CB LYS 60 6.076 4.943 21.044 1.00 0.00 C ATOM 146 CG LYS 60 5.310 5.399 22.274 1.00 0.00 C ATOM 147 CD LYS 60 3.810 5.408 22.018 1.00 0.00 C ATOM 148 CE LYS 60 3.042 5.856 23.251 1.00 0.00 C ATOM 149 NZ LYS 60 1.573 5.869 23.016 1.00 0.00 N ATOM 150 O LYS 60 7.645 3.161 19.642 1.00 0.00 O ATOM 151 C LYS 60 8.197 4.158 20.049 1.00 0.00 C ATOM 152 N SER 61 9.347 4.615 19.570 1.00 0.00 N ATOM 153 CA SER 61 9.887 4.002 18.411 1.00 0.00 C ATOM 154 CB SER 61 9.651 4.881 17.182 1.00 0.00 C ATOM 155 OG SER 61 10.344 6.112 17.293 1.00 0.00 O ATOM 156 O SER 61 11.929 4.306 19.549 1.00 0.00 O ATOM 157 C SER 61 11.336 3.763 18.638 1.00 0.00 C ATOM 158 N GLU 62 11.923 2.901 17.815 1.00 0.00 N ATOM 159 CA GLU 62 13.307 2.682 17.956 1.00 0.00 C ATOM 160 CB GLU 62 13.688 1.303 17.415 1.00 0.00 C ATOM 161 CG GLU 62 15.148 0.936 17.626 1.00 0.00 C ATOM 162 CD GLU 62 15.474 -0.459 17.131 1.00 0.00 C ATOM 163 OE1 GLU 62 14.833 -0.910 16.157 1.00 0.00 O ATOM 164 OE2 GLU 62 16.371 -1.103 17.715 1.00 0.00 O ATOM 165 O GLU 62 13.635 4.258 16.154 1.00 0.00 O ATOM 166 C GLU 62 14.046 3.812 17.212 1.00 0.00 C ATOM 167 N ILE 63 15.118 4.300 17.792 1.00 0.00 N ATOM 168 CA ILE 63 15.899 5.410 17.171 1.00 0.00 C ATOM 169 CB ILE 63 15.793 6.705 17.997 1.00 0.00 C ATOM 170 CG1 ILE 63 16.388 6.499 19.393 1.00 0.00 C ATOM 171 CG2 ILE 63 14.349 7.181 18.062 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 166 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 39.62 84.6 39 19.3 202 ARMSMC SECONDARY STRUCTURE . . 46.58 80.8 26 22.8 114 ARMSMC SURFACE . . . . . . . . 52.43 71.4 21 14.8 142 ARMSMC BURIED . . . . . . . . 13.91 100.0 18 30.0 60 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.52 64.7 17 21.8 78 ARMSSC1 RELIABLE SIDE CHAINS . 78.27 60.0 15 22.4 67 ARMSSC1 SECONDARY STRUCTURE . . 79.07 58.3 12 25.0 48 ARMSSC1 SURFACE . . . . . . . . 57.01 77.8 9 16.1 56 ARMSSC1 BURIED . . . . . . . . 88.49 50.0 8 36.4 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.44 58.3 12 24.0 50 ARMSSC2 RELIABLE SIDE CHAINS . 70.22 66.7 9 23.1 39 ARMSSC2 SECONDARY STRUCTURE . . 80.58 44.4 9 32.1 28 ARMSSC2 SURFACE . . . . . . . . 64.30 62.5 8 20.5 39 ARMSSC2 BURIED . . . . . . . . 81.35 50.0 4 36.4 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.45 33.3 6 28.6 21 ARMSSC3 RELIABLE SIDE CHAINS . 70.27 40.0 5 29.4 17 ARMSSC3 SECONDARY STRUCTURE . . 83.32 40.0 5 38.5 13 ARMSSC3 SURFACE . . . . . . . . 70.27 40.0 5 25.0 20 ARMSSC3 BURIED . . . . . . . . 106.31 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 37.99 75.0 4 36.4 11 ARMSSC4 RELIABLE SIDE CHAINS . 37.99 75.0 4 36.4 11 ARMSSC4 SECONDARY STRUCTURE . . 37.99 75.0 4 50.0 8 ARMSSC4 SURFACE . . . . . . . . 37.99 75.0 4 36.4 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.77 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.77 21 20.6 102 CRMSCA CRN = ALL/NP . . . . . 0.1321 CRMSCA SECONDARY STRUCTURE . . 2.59 13 22.8 57 CRMSCA SURFACE . . . . . . . . 3.04 11 15.3 72 CRMSCA BURIED . . . . . . . . 2.45 10 33.3 30 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.80 103 20.5 503 CRMSMC SECONDARY STRUCTURE . . 2.60 65 23.0 282 CRMSMC SURFACE . . . . . . . . 3.08 55 15.5 354 CRMSMC BURIED . . . . . . . . 2.43 48 32.2 149 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.07 84 24.6 341 CRMSSC RELIABLE SIDE CHAINS . 4.14 70 24.4 287 CRMSSC SECONDARY STRUCTURE . . 3.83 63 30.3 208 CRMSSC SURFACE . . . . . . . . 4.31 50 20.0 250 CRMSSC BURIED . . . . . . . . 3.68 34 37.4 91 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.46 166 22.2 749 CRMSALL SECONDARY STRUCTURE . . 3.30 115 26.4 436 CRMSALL SURFACE . . . . . . . . 3.72 94 17.5 538 CRMSALL BURIED . . . . . . . . 3.07 72 34.1 211 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.501 1.000 0.500 21 20.6 102 ERRCA SECONDARY STRUCTURE . . 2.451 1.000 0.500 13 22.8 57 ERRCA SURFACE . . . . . . . . 2.745 1.000 0.500 11 15.3 72 ERRCA BURIED . . . . . . . . 2.232 1.000 0.500 10 33.3 30 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.500 1.000 0.500 103 20.5 503 ERRMC SECONDARY STRUCTURE . . 2.424 1.000 0.500 65 23.0 282 ERRMC SURFACE . . . . . . . . 2.733 1.000 0.500 55 15.5 354 ERRMC BURIED . . . . . . . . 2.232 1.000 0.500 48 32.2 149 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.541 1.000 0.500 84 24.6 341 ERRSC RELIABLE SIDE CHAINS . 3.588 1.000 0.500 70 24.4 287 ERRSC SECONDARY STRUCTURE . . 3.414 1.000 0.500 63 30.3 208 ERRSC SURFACE . . . . . . . . 3.696 1.000 0.500 50 20.0 250 ERRSC BURIED . . . . . . . . 3.313 1.000 0.500 34 37.4 91 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.988 1.000 0.500 166 22.2 749 ERRALL SECONDARY STRUCTURE . . 2.926 1.000 0.500 115 26.4 436 ERRALL SURFACE . . . . . . . . 3.181 1.000 0.500 94 17.5 538 ERRALL BURIED . . . . . . . . 2.736 1.000 0.500 72 34.1 211 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 8 14 20 21 21 102 DISTCA CA (P) 0.98 7.84 13.73 19.61 20.59 102 DISTCA CA (RMS) 0.86 1.37 1.96 2.50 2.77 DISTCA ALL (N) 7 58 95 150 166 166 749 DISTALL ALL (P) 0.93 7.74 12.68 20.03 22.16 749 DISTALL ALL (RMS) 0.91 1.48 1.95 2.79 3.46 DISTALL END of the results output