####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 85 ( 340), selected 85 , name T0572TS328_1-D1 # Molecule2: number of CA atoms 86 ( 1315), selected 85 , name T0572-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0572TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 15 - 37 4.92 23.34 LCS_AVERAGE: 22.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 25 - 35 1.74 20.77 LCS_AVERAGE: 9.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 25 - 32 0.96 20.95 LONGEST_CONTINUOUS_SEGMENT: 8 26 - 33 0.91 20.76 LCS_AVERAGE: 6.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 85 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 8 L 8 3 4 10 3 3 4 4 4 6 7 7 9 12 15 15 17 19 21 23 25 28 31 32 LCS_GDT S 9 S 9 3 5 10 3 3 4 4 5 6 8 8 10 12 15 17 17 19 21 23 25 29 31 33 LCS_GDT K 10 K 10 3 8 10 3 3 4 5 6 7 8 8 10 12 15 17 18 19 21 24 26 29 31 33 LCS_GDT S 11 S 11 6 8 10 3 4 7 7 7 9 9 11 12 12 15 17 18 19 21 24 26 29 31 33 LCS_GDT V 12 V 12 6 8 10 3 5 7 7 7 9 9 11 12 12 13 17 18 19 21 24 26 29 31 33 LCS_GDT P 13 P 13 6 8 10 3 5 7 7 7 9 9 11 12 15 16 18 19 21 22 24 26 29 31 33 LCS_GDT V 14 V 14 6 8 21 3 5 7 7 7 9 9 11 12 16 17 19 20 21 24 25 27 30 31 33 LCS_GDT K 15 K 15 6 8 23 3 5 7 7 7 9 9 11 12 15 16 18 20 21 24 26 29 31 33 34 LCS_GDT L 16 L 16 6 8 23 3 5 7 7 10 12 14 15 16 17 19 21 21 22 24 27 29 32 33 34 LCS_GDT E 17 E 17 6 8 23 3 5 7 7 9 11 14 15 16 17 19 21 21 24 26 29 31 32 34 34 LCS_GDT L 18 L 18 5 6 23 3 4 5 6 6 8 11 15 15 17 19 21 21 22 26 29 31 32 34 34 LCS_GDT T 19 T 19 5 8 23 3 4 5 7 10 12 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT G 20 G 20 5 8 23 3 4 5 10 14 16 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT D 21 D 21 5 8 23 3 5 5 10 14 16 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT K 22 K 22 5 8 23 3 5 7 10 14 16 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT A 23 A 23 5 10 23 3 5 5 9 14 16 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT S 24 S 24 5 10 23 3 5 5 7 10 16 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT N 25 N 25 8 11 23 3 5 6 8 10 12 14 15 21 21 21 24 24 27 29 29 31 32 34 34 LCS_GDT V 26 V 26 8 11 23 3 8 8 10 10 12 14 15 16 18 21 24 24 26 29 29 31 32 34 34 LCS_GDT S 27 S 27 8 11 23 3 8 8 10 10 11 13 14 16 18 19 21 21 21 22 24 25 26 29 30 LCS_GDT S 28 S 28 8 11 23 4 8 8 10 10 11 12 14 15 18 19 21 21 21 22 24 25 26 29 30 LCS_GDT I 29 I 29 8 11 23 4 8 8 10 10 12 14 15 16 18 19 21 21 21 22 24 25 26 29 30 LCS_GDT S 30 S 30 8 11 23 4 8 8 10 10 12 14 15 16 18 19 21 21 21 22 24 25 26 29 30 LCS_GDT Y 31 Y 31 8 11 23 4 8 8 10 10 12 14 15 16 18 19 21 21 21 22 26 27 30 31 32 LCS_GDT S 32 S 32 8 11 23 3 8 8 10 10 12 14 15 16 18 19 21 21 21 24 26 27 30 31 34 LCS_GDT F 33 F 33 8 11 23 3 4 8 10 10 11 12 14 16 18 19 21 21 21 24 26 29 31 33 34 LCS_GDT D 34 D 34 6 11 23 3 4 8 10 10 11 12 14 15 18 19 21 21 21 22 26 29 31 33 34 LCS_GDT R 35 R 35 6 11 23 3 4 8 9 10 11 12 14 15 18 19 21 21 21 22 26 29 31 33 34 LCS_GDT G 36 G 36 5 10 23 3 4 8 9 10 11 12 14 15 18 19 21 21 21 22 26 29 31 33 34 LCS_GDT H 37 H 37 5 10 23 3 4 6 9 9 11 12 14 15 17 18 19 20 21 21 22 25 26 30 32 LCS_GDT V 38 V 38 5 9 22 4 5 6 9 9 11 12 14 15 17 18 19 20 21 22 22 25 25 30 31 LCS_GDT T 39 T 39 5 9 22 4 5 6 9 9 11 12 14 15 17 18 19 20 21 22 22 23 25 27 28 LCS_GDT I 40 I 40 5 9 22 4 5 6 9 9 11 12 14 15 17 18 19 20 21 21 23 25 28 31 32 LCS_GDT V 41 V 41 5 9 22 4 5 6 9 9 11 12 14 15 17 18 19 20 21 21 23 25 28 31 32 LCS_GDT G 42 G 42 3 9 22 0 3 5 9 9 11 12 14 15 17 18 19 20 21 21 23 25 29 31 33 LCS_GDT S 43 S 43 7 9 22 7 7 7 9 9 11 12 14 15 17 18 19 20 21 21 23 26 29 31 33 LCS_GDT Q 44 Q 44 7 9 22 7 7 7 7 7 11 11 14 15 17 18 19 20 21 21 24 26 29 31 33 LCS_GDT E 45 E 45 7 8 22 7 7 7 7 9 11 11 14 15 17 18 19 20 21 21 24 26 27 30 33 LCS_GDT A 46 A 46 7 8 22 7 7 7 9 9 11 12 14 15 17 18 19 20 21 21 24 26 27 30 33 LCS_GDT M 47 M 47 7 8 22 7 7 7 7 7 7 10 12 15 17 18 19 20 21 21 24 26 28 30 33 LCS_GDT D 48 D 48 7 8 22 7 7 7 7 7 8 10 12 15 17 18 19 20 21 21 24 26 27 30 31 LCS_GDT K 49 K 49 7 8 22 7 7 7 8 8 11 12 14 15 17 18 19 20 21 21 22 26 27 28 30 LCS_GDT I 50 I 50 3 8 22 2 5 6 8 8 11 12 14 15 17 18 19 20 21 21 22 26 27 30 31 LCS_GDT S 52 S 52 4 7 22 2 4 6 6 8 10 12 14 15 17 18 19 20 21 21 23 26 27 29 31 LCS_GDT I 53 I 53 4 7 22 2 4 6 6 7 10 11 13 15 17 18 19 20 21 22 24 26 29 31 33 LCS_GDT T 54 T 54 4 7 22 3 4 6 6 7 8 9 11 12 15 16 18 21 25 26 29 31 32 34 34 LCS_GDT V 55 V 55 4 7 22 3 4 6 6 7 14 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT P 56 P 56 3 9 22 3 3 5 8 9 13 17 18 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT V 57 V 57 3 9 22 3 5 5 6 8 10 10 12 15 17 21 22 22 27 29 29 31 32 34 34 LCS_GDT D 58 D 58 6 9 22 3 4 6 8 10 15 17 19 20 20 21 23 24 26 29 29 31 32 34 34 LCS_GDT I 59 I 59 6 9 22 5 5 6 8 10 15 17 19 20 20 22 24 24 27 29 29 31 32 34 34 LCS_GDT S 60 S 60 6 9 22 5 5 6 8 8 13 16 19 20 20 21 22 22 23 24 26 29 31 33 34 LCS_GDT Q 61 Q 61 6 9 22 5 5 6 8 10 13 16 19 20 20 21 22 22 24 25 26 29 31 33 34 LCS_GDT V 62 V 62 6 9 22 5 8 8 10 11 15 17 19 20 20 21 24 24 27 29 29 31 32 34 34 LCS_GDT T 63 T 63 6 9 22 5 5 6 7 10 15 17 19 20 20 21 24 24 27 29 29 31 32 34 34 LCS_GDT E 64 E 64 4 9 22 3 4 5 7 8 11 16 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT D 65 D 65 5 10 22 3 4 5 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT T 66 T 66 5 10 22 3 4 5 7 12 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT S 67 S 67 5 10 22 3 4 5 9 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT K 68 K 68 5 10 22 3 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT T 69 T 69 5 10 22 3 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT L 70 L 70 5 10 22 3 4 6 7 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT E 71 E 71 5 10 22 3 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT L 72 L 72 5 10 22 3 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT K 73 K 73 5 10 22 3 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT A 74 A 74 5 10 22 3 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT E 75 E 75 3 4 22 0 3 3 3 5 8 8 8 11 13 14 18 21 23 25 29 30 31 34 34 LCS_GDT G 76 G 76 4 6 21 3 3 6 7 7 8 8 8 9 10 11 15 17 20 22 22 23 25 26 29 LCS_GDT V 77 V 77 5 6 12 3 4 6 7 7 8 8 8 9 10 12 15 17 20 22 22 23 25 26 28 LCS_GDT T 78 T 78 5 6 12 3 4 6 7 7 8 8 8 9 11 12 15 17 20 22 24 26 27 28 31 LCS_GDT V 79 V 79 5 6 12 3 4 6 7 7 8 8 10 10 12 15 16 17 20 22 24 26 29 31 33 LCS_GDT Q 80 Q 80 5 6 12 3 4 6 7 7 8 8 8 10 12 15 17 17 20 22 24 26 29 31 33 LCS_GDT P 81 P 81 5 6 12 3 4 6 7 7 8 8 8 10 12 15 17 17 20 22 23 25 29 31 33 LCS_GDT S 82 S 82 5 7 12 4 4 5 5 6 8 8 8 9 10 10 11 17 17 19 23 25 29 31 33 LCS_GDT T 83 T 83 5 7 12 4 4 5 7 7 8 8 8 9 10 15 17 17 20 22 23 26 29 31 33 LCS_GDT V 84 V 84 5 7 12 4 4 5 5 6 8 8 10 11 14 20 21 24 25 26 29 31 32 34 34 LCS_GDT K 85 K 85 5 7 12 4 4 7 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT V 86 V 86 5 7 11 3 4 6 6 9 12 17 19 21 21 22 24 24 27 29 29 31 32 34 34 LCS_GDT N 87 N 87 5 7 11 3 5 6 6 6 9 9 10 12 16 16 23 24 27 29 29 31 32 34 34 LCS_GDT L 88 L 88 5 7 11 4 5 6 6 6 9 9 10 12 15 16 18 20 21 24 25 29 31 33 34 LCS_GDT K 89 K 89 5 6 11 4 4 6 6 6 9 9 10 12 15 16 18 20 21 24 25 29 31 33 34 LCS_GDT V 90 V 90 3 6 11 4 4 5 5 6 8 8 10 12 15 16 18 20 21 24 25 27 29 33 34 LCS_GDT T 91 T 91 3 5 10 3 3 3 5 5 5 5 6 9 13 16 18 20 21 24 26 29 31 33 34 LCS_GDT Q 92 Q 92 3 5 8 0 3 4 5 5 5 5 6 9 9 9 12 15 17 22 26 29 31 33 34 LCS_GDT K 93 K 93 3 5 7 2 3 4 5 5 5 5 6 9 9 10 12 16 18 22 26 29 31 33 34 LCS_AVERAGE LCS_A: 12.73 ( 6.17 9.69 22.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 8 10 14 16 17 19 21 21 22 24 24 27 29 29 31 32 34 34 GDT PERCENT_AT 8.14 9.30 9.30 11.63 16.28 18.60 19.77 22.09 24.42 24.42 25.58 27.91 27.91 31.40 33.72 33.72 36.05 37.21 39.53 39.53 GDT RMS_LOCAL 0.23 0.71 0.71 1.12 1.77 2.07 2.22 2.79 2.91 2.91 3.13 3.49 3.51 4.11 4.48 4.48 4.90 5.09 5.48 5.48 GDT RMS_ALL_AT 29.13 20.93 20.93 20.79 19.74 19.78 19.67 21.88 19.88 19.88 20.00 20.12 20.07 20.30 20.41 20.41 20.25 20.11 19.95 19.95 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 8 L 8 47.677 4 0.053 0.053 48.321 0.000 0.000 LGA S 9 S 9 42.011 2 0.074 0.074 44.558 0.000 0.000 LGA K 10 K 10 38.634 5 0.193 0.193 39.178 0.000 0.000 LGA S 11 S 11 34.607 2 0.527 0.527 36.022 0.000 0.000 LGA V 12 V 12 32.672 3 0.589 0.589 32.866 0.000 0.000 LGA P 13 P 13 28.357 3 0.293 0.293 30.022 0.000 0.000 LGA V 14 V 14 23.991 3 0.379 0.379 25.293 0.000 0.000 LGA K 15 K 15 24.085 5 0.248 0.248 24.085 0.000 0.000 LGA L 16 L 16 20.059 4 0.209 0.209 22.327 0.000 0.000 LGA E 17 E 17 19.173 5 0.293 0.293 19.173 0.000 0.000 LGA L 18 L 18 17.542 4 0.035 0.035 18.766 0.000 0.000 LGA T 19 T 19 13.754 3 0.430 0.430 14.376 0.000 0.000 LGA G 20 G 20 12.871 0 0.216 0.216 13.024 0.000 0.000 LGA D 21 D 21 12.171 4 0.519 0.519 12.467 0.357 0.179 LGA K 22 K 22 13.053 5 0.067 0.067 14.613 0.000 0.000 LGA A 23 A 23 12.780 1 0.201 0.201 14.478 0.000 0.000 LGA S 24 S 24 16.039 2 0.093 0.093 16.909 0.000 0.000 LGA N 25 N 25 16.396 4 0.545 0.545 17.341 0.000 0.000 LGA V 26 V 26 16.440 3 0.148 0.148 20.485 0.000 0.000 LGA S 27 S 27 22.622 2 0.255 0.255 23.021 0.000 0.000 LGA S 28 S 28 22.374 2 0.116 0.116 22.374 0.000 0.000 LGA I 29 I 29 18.609 4 0.062 0.062 19.785 0.000 0.000 LGA S 30 S 30 20.316 2 0.170 0.170 20.316 0.000 0.000 LGA Y 31 Y 31 18.417 8 0.130 0.130 19.252 0.000 0.000 LGA S 32 S 32 20.902 2 0.392 0.392 20.936 0.000 0.000 LGA F 33 F 33 21.654 7 0.065 0.065 22.620 0.000 0.000 LGA D 34 D 34 24.498 4 0.709 0.709 28.074 0.000 0.000 LGA R 35 R 35 25.417 7 0.053 0.053 25.494 0.000 0.000 LGA G 36 G 36 24.430 0 0.534 0.534 24.600 0.000 0.000 LGA H 37 H 37 24.644 6 0.241 0.241 26.551 0.000 0.000 LGA V 38 V 38 24.658 3 0.115 0.115 25.712 0.000 0.000 LGA T 39 T 39 29.081 3 0.026 0.026 29.641 0.000 0.000 LGA I 40 I 40 30.443 4 0.060 0.060 32.796 0.000 0.000 LGA V 41 V 41 36.393 3 0.558 0.558 36.393 0.000 0.000 LGA G 42 G 42 37.856 0 0.651 0.651 39.207 0.000 0.000 LGA S 43 S 43 41.215 2 0.633 0.633 41.433 0.000 0.000 LGA Q 44 Q 44 43.918 5 0.019 0.019 43.918 0.000 0.000 LGA E 45 E 45 41.236 5 0.006 0.006 42.253 0.000 0.000 LGA A 46 A 46 35.151 1 0.029 0.029 37.420 0.000 0.000 LGA M 47 M 47 36.599 4 0.020 0.020 37.266 0.000 0.000 LGA D 48 D 48 39.883 4 0.095 0.095 39.883 0.000 0.000 LGA K 49 K 49 34.964 5 0.670 0.670 36.510 0.000 0.000 LGA I 50 I 50 28.176 4 0.101 0.101 30.519 0.000 0.000 LGA S 52 S 52 22.081 2 0.155 0.155 24.385 0.000 0.000 LGA I 53 I 53 15.660 4 0.210 0.210 17.689 0.000 0.000 LGA T 54 T 54 13.008 3 0.157 0.157 13.657 0.357 0.204 LGA V 55 V 55 9.213 3 0.304 0.304 10.693 4.643 2.653 LGA P 56 P 56 4.282 3 0.560 0.560 5.699 34.762 19.864 LGA V 57 V 57 6.176 3 0.110 0.110 6.413 20.476 11.701 LGA D 58 D 58 2.495 4 0.572 0.572 4.207 50.595 25.298 LGA I 59 I 59 3.316 4 0.160 0.160 3.316 55.476 27.738 LGA S 60 S 60 3.849 2 0.063 0.063 4.742 45.714 30.476 LGA Q 61 Q 61 3.891 5 0.127 0.127 3.891 48.452 21.534 LGA V 62 V 62 1.910 3 0.055 0.055 3.268 69.286 39.592 LGA T 63 T 63 2.213 3 0.533 0.533 4.276 58.333 33.333 LGA E 64 E 64 3.871 5 0.038 0.038 3.871 59.881 26.614 LGA D 65 D 65 2.257 4 0.476 0.476 2.964 65.119 32.560 LGA T 66 T 66 1.440 3 0.093 0.093 3.227 73.571 42.041 LGA S 67 S 67 1.502 2 0.025 0.025 2.474 77.381 51.587 LGA K 68 K 68 3.061 5 0.664 0.664 4.655 50.833 22.593 LGA T 69 T 69 1.235 3 0.100 0.100 3.214 69.405 39.660 LGA L 70 L 70 3.151 4 0.616 0.616 3.499 55.476 27.738 LGA E 71 E 71 2.869 5 0.407 0.407 2.908 57.143 25.397 LGA L 72 L 72 2.970 4 0.035 0.035 3.269 55.357 27.679 LGA K 73 K 73 2.311 5 0.094 0.094 3.071 59.167 26.296 LGA A 74 A 74 3.133 1 0.528 0.528 7.140 34.643 27.714 LGA E 75 E 75 10.057 5 0.177 0.177 12.754 2.500 1.111 LGA G 76 G 76 16.548 0 0.683 0.683 19.284 0.000 0.000 LGA V 77 V 77 19.889 3 0.695 0.695 20.845 0.000 0.000 LGA T 78 T 78 22.308 3 0.217 0.217 22.308 0.000 0.000 LGA V 79 V 79 20.262 3 0.168 0.168 22.183 0.000 0.000 LGA Q 80 Q 80 22.466 5 0.072 0.072 22.466 0.000 0.000 LGA P 81 P 81 22.169 3 0.669 0.669 22.781 0.000 0.000 LGA S 82 S 82 21.975 2 0.641 0.641 21.975 0.000 0.000 LGA T 83 T 83 15.212 3 0.049 0.049 17.837 0.000 0.000 LGA V 84 V 84 9.023 3 0.127 0.127 11.052 7.976 4.558 LGA K 85 K 85 1.945 5 0.090 0.090 4.605 57.262 25.450 LGA V 86 V 86 3.362 3 0.131 0.131 4.933 44.405 25.374 LGA N 87 N 87 8.392 4 0.153 0.153 10.054 4.643 2.321 LGA L 88 L 88 12.075 4 0.286 0.286 13.844 0.000 0.000 LGA K 89 K 89 17.202 5 0.615 0.615 17.202 0.000 0.000 LGA V 90 V 90 17.022 3 0.557 0.557 17.408 0.000 0.000 LGA T 91 T 91 15.697 3 0.412 0.412 15.899 0.000 0.000 LGA Q 92 Q 92 15.352 5 0.057 0.057 15.585 0.000 0.000 LGA K 93 K 93 13.535 5 0.128 0.128 15.305 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 85 340 340 100.00 636 340 53.46 86 SUMMARY(RMSD_GDC): 16.491 16.377 16.377 13.526 7.224 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 85 86 4.0 19 2.79 19.186 17.395 0.657 LGA_LOCAL RMSD: 2.793 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 21.885 Number of assigned atoms: 85 Std_ASGN_ATOMS RMSD: 16.491 Standard rmsd on all 85 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.823570 * X + 0.265179 * Y + 0.501410 * Z + 1.317948 Y_new = 0.556630 * X + 0.547819 * Y + 0.624546 * Z + -80.212921 Z_new = -0.109065 * X + 0.793457 * Y + -0.598774 * Z + -59.308372 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.547242 0.109283 2.217260 [DEG: 145.9462 6.2614 127.0396 ] ZXZ: 2.465123 2.212766 -0.136600 [DEG: 141.2411 126.7821 -7.8266 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0572TS328_1-D1 REMARK 2: T0572-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0572TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 85 86 4.0 19 2.79 17.395 16.49 REMARK ---------------------------------------------------------- MOLECULE T0572TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0572 REMARK MODEL 1 REMARK PARENT 3jx8_F ATOM 25 N LEU 8 -20.011 -19.125 0.181 1.00 3.00 N ATOM 26 CA LEU 8 -19.544 -19.469 1.522 1.00 3.00 C ATOM 27 C LEU 8 -18.727 -18.257 1.989 1.00 3.00 C ATOM 28 O LEU 8 -17.977 -17.680 1.199 1.00 3.00 O ATOM 29 N SER 9 -18.858 -17.886 3.265 1.00 3.00 N ATOM 30 CA SER 9 -18.149 -16.706 3.746 1.00 3.00 C ATOM 31 C SER 9 -17.791 -16.653 5.227 1.00 3.00 C ATOM 32 O SER 9 -18.483 -17.234 6.073 1.00 3.00 O ATOM 33 N LYS 10 -16.694 -15.938 5.516 1.00 9.00 N ATOM 34 CA LYS 10 -16.195 -15.715 6.873 1.00 9.00 C ATOM 35 C LYS 10 -15.238 -16.738 7.477 1.00 9.00 C ATOM 36 O LYS 10 -15.533 -17.931 7.496 1.00 9.00 O ATOM 37 N SER 11 -14.100 -16.241 7.956 1.00 3.00 N ATOM 38 CA SER 11 -13.063 -17.045 8.612 1.00 3.00 C ATOM 39 C SER 11 -12.499 -18.225 7.823 1.00 3.00 C ATOM 40 O SER 11 -12.096 -19.227 8.434 1.00 3.00 O ATOM 41 N VAL 12 -12.441 -18.113 6.500 1.00 3.00 N ATOM 42 CA VAL 12 -11.921 -19.223 5.713 1.00 3.00 C ATOM 43 C VAL 12 -10.391 -19.297 5.832 1.00 3.00 C ATOM 44 O VAL 12 -9.816 -20.389 5.921 1.00 3.00 O ATOM 45 N PRO 13 -9.756 -18.130 5.859 1.00 3.00 N ATOM 46 CA PRO 13 -8.314 -18.001 5.989 1.00 3.00 C ATOM 47 C PRO 13 -8.627 -18.622 4.257 1.00 3.00 C ATOM 48 O PRO 13 -8.967 -19.766 3.997 1.00 3.00 O ATOM 49 N VAL 14 -8.026 -17.824 3.378 1.00 3.00 N ATOM 50 CA VAL 14 -7.561 -18.259 2.042 1.00 3.00 C ATOM 51 C VAL 14 -6.568 -18.647 0.942 1.00 3.00 C ATOM 52 O VAL 14 -5.360 -18.398 1.057 1.00 3.00 O ATOM 53 N LYS 15 -7.107 -19.127 -0.168 1.00 3.00 N ATOM 54 CA LYS 15 -6.291 -19.640 -1.251 1.00 3.00 C ATOM 55 C LYS 15 -5.949 -18.719 -2.404 1.00 3.00 C ATOM 56 O LYS 15 -6.252 -17.524 -2.342 1.00 3.00 O ATOM 57 N LEU 16 -5.285 -19.276 -3.428 1.00 3.00 N ATOM 58 CA LEU 16 -4.882 -18.550 -4.631 1.00 3.00 C ATOM 59 C LEU 16 -5.776 -18.870 -5.840 1.00 3.00 C ATOM 60 O LEU 16 -6.815 -19.462 -5.674 1.00 3.00 O ATOM 61 N GLU 17 -5.356 -18.499 -7.043 1.00 3.00 N ATOM 62 CA GLU 17 -6.154 -18.739 -8.255 1.00 3.00 C ATOM 63 C GLU 17 -7.509 -18.030 -8.178 1.00 3.00 C ATOM 64 O GLU 17 -7.708 -17.076 -7.371 1.00 3.00 O ATOM 65 N LEU 18 -8.422 -18.474 -9.037 1.00 3.00 N ATOM 66 CA LEU 18 -9.759 -17.878 -9.054 1.00 3.00 C ATOM 67 C LEU 18 -10.452 -17.995 -7.699 1.00 3.00 C ATOM 68 O LEU 18 -10.462 -19.071 -7.058 1.00 3.00 O ATOM 69 N THR 19 -11.054 -16.893 -7.239 1.00 3.00 N ATOM 70 CA THR 19 -11.707 -16.940 -5.950 1.00 3.00 C ATOM 71 C THR 19 -12.888 -17.325 -5.047 1.00 3.00 C ATOM 72 O THR 19 -13.311 -18.483 -5.002 1.00 3.00 O ATOM 73 N GLY 20 -13.379 -16.355 -4.281 1.00 3.00 N ATOM 74 CA GLY 20 -14.598 -16.493 -3.478 1.00 3.00 C ATOM 75 C GLY 20 -15.581 -15.461 -4.008 1.00 3.00 C ATOM 76 O GLY 20 -15.403 -14.247 -3.816 1.00 3.00 O ATOM 77 N ASP 21 -16.624 -15.931 -4.668 1.00 3.00 N ATOM 78 CA ASP 21 -17.480 -15.046 -5.439 1.00 3.00 C ATOM 79 C ASP 21 -18.008 -13.919 -4.575 1.00 3.00 C ATOM 80 O ASP 21 -17.620 -12.767 -4.748 1.00 3.00 O ATOM 81 N LYS 22 -18.994 -14.239 -3.740 1.00 3.00 N ATOM 82 CA LYS 22 -19.603 -13.274 -2.835 1.00 3.00 C ATOM 83 C LYS 22 -19.417 -13.907 -1.439 1.00 3.00 C ATOM 84 O LYS 22 -19.525 -15.122 -1.314 1.00 3.00 O ATOM 85 N ALA 23 -19.126 -13.106 -0.422 1.00 3.00 N ATOM 86 CA ALA 23 -18.935 -13.601 0.943 1.00 3.00 C ATOM 87 C ALA 23 -20.296 -13.435 1.625 1.00 3.00 C ATOM 88 O ALA 23 -20.622 -12.369 2.111 1.00 3.00 O ATOM 89 N SER 24 -21.078 -14.515 1.676 1.00 9.00 N ATOM 90 CA SER 24 -22.407 -14.499 2.277 1.00 9.00 C ATOM 91 C SER 24 -22.551 -13.930 3.689 1.00 9.00 C ATOM 92 O SER 24 -23.510 -13.213 3.977 1.00 9.00 O ATOM 93 N ASN 25 -21.623 -14.306 4.554 1.00 3.00 N ATOM 94 CA ASN 25 -21.674 -13.826 5.906 1.00 3.00 C ATOM 95 C ASN 25 -20.375 -13.201 6.299 1.00 3.00 C ATOM 96 O ASN 25 -19.339 -13.861 6.347 1.00 3.00 O ATOM 97 N VAL 26 -20.406 -11.915 6.641 1.00 3.00 N ATOM 98 CA VAL 26 -19.186 -11.236 7.039 1.00 3.00 C ATOM 99 C VAL 26 -18.937 -11.482 8.526 1.00 3.00 C ATOM 100 O VAL 26 -19.854 -11.848 9.261 1.00 3.00 O ATOM 101 N SER 27 -17.691 -11.301 8.939 1.00 3.00 N ATOM 102 CA SER 27 -17.176 -11.480 10.309 1.00 3.00 C ATOM 103 C SER 27 -15.664 -11.268 10.083 1.00 3.00 C ATOM 104 O SER 27 -15.163 -10.149 10.272 1.00 3.00 O ATOM 105 N SER 28 -14.957 -12.325 9.684 1.00 3.00 N ATOM 106 CA SER 28 -13.512 -12.256 9.466 1.00 3.00 C ATOM 107 C SER 28 -13.060 -12.915 8.194 1.00 3.00 C ATOM 108 O SER 28 -13.493 -14.034 7.897 1.00 3.00 O ATOM 109 N ILE 29 -12.168 -12.225 7.466 1.00 3.00 N ATOM 110 CA ILE 29 -11.517 -12.768 6.282 1.00 3.00 C ATOM 111 C ILE 29 -10.021 -12.579 6.401 1.00 3.00 C ATOM 112 O ILE 29 -9.548 -11.484 6.705 1.00 3.00 O ATOM 113 N SER 30 -9.267 -13.642 6.151 1.00 3.00 N ATOM 114 CA SER 30 -7.830 -13.563 6.097 1.00 3.00 C ATOM 115 C SER 30 -7.312 -14.206 4.806 1.00 3.00 C ATOM 116 O SER 30 -7.560 -15.389 4.548 1.00 3.00 O ATOM 117 N TYR 31 -6.589 -13.435 3.997 1.00 3.00 N ATOM 118 CA TYR 31 -5.971 -13.959 2.789 1.00 3.00 C ATOM 119 C TYR 31 -4.472 -13.755 2.771 1.00 3.00 C ATOM 120 O TYR 31 -4.005 -12.607 2.917 1.00 3.00 O ATOM 121 N SER 32 -3.728 -14.836 2.529 1.00 3.00 N ATOM 122 CA SER 32 -2.280 -14.769 2.415 1.00 3.00 C ATOM 123 C SER 32 -1.921 -15.434 1.213 1.00 3.00 C ATOM 124 O SER 32 -1.408 -16.670 1.245 1.00 3.00 O ATOM 125 N PHE 33 -2.100 -14.956 0.021 1.00 3.00 N ATOM 126 CA PHE 33 -1.741 -15.574 -1.113 1.00 3.00 C ATOM 127 C PHE 33 -0.296 -15.082 -1.581 1.00 3.00 C ATOM 128 O PHE 33 -0.113 -13.899 -1.392 1.00 3.00 O ATOM 129 N ASP 34 0.442 -15.960 -2.114 1.00 3.00 N ATOM 130 CA ASP 34 1.803 -15.431 -2.617 1.00 3.00 C ATOM 131 C ASP 34 1.811 -15.742 -4.081 1.00 3.00 C ATOM 132 O ASP 34 1.285 -16.920 -4.462 1.00 3.00 O ATOM 133 N ARG 35 2.281 -14.969 -4.973 1.00 3.00 N ATOM 134 CA ARG 35 2.521 -15.061 -6.395 1.00 3.00 C ATOM 135 C ARG 35 1.271 -15.217 -7.283 1.00 3.00 C ATOM 136 O ARG 35 1.191 -14.451 -8.242 1.00 3.00 O ATOM 137 N GLY 36 0.402 -16.143 -7.060 1.00 3.00 N ATOM 138 CA GLY 36 -0.789 -16.316 -7.979 1.00 3.00 C ATOM 139 C GLY 36 -2.055 -15.804 -7.332 1.00 3.00 C ATOM 140 O GLY 36 -2.352 -16.302 -6.184 1.00 3.00 O ATOM 141 N HIS 37 -2.748 -14.917 -7.952 1.00 3.00 N ATOM 142 CA HIS 37 -3.956 -14.382 -7.310 1.00 3.00 C ATOM 143 C HIS 37 -5.086 -14.868 -6.395 1.00 3.00 C ATOM 144 O HIS 37 -5.548 -16.004 -6.518 1.00 3.00 O ATOM 145 N VAL 38 -5.501 -14.010 -5.473 1.00 3.00 N ATOM 146 CA VAL 38 -6.689 -14.245 -4.656 1.00 3.00 C ATOM 147 C VAL 38 -7.675 -13.140 -4.953 1.00 3.00 C ATOM 148 O VAL 38 -7.313 -11.938 -4.955 1.00 3.00 O ATOM 149 N THR 39 -8.905 -13.541 -5.251 1.00 3.00 N ATOM 150 CA THR 39 -9.995 -12.614 -5.498 1.00 3.00 C ATOM 151 C THR 39 -11.187 -12.912 -4.587 1.00 3.00 C ATOM 152 O THR 39 -11.620 -14.070 -4.467 1.00 3.00 O ATOM 153 N ILE 40 -11.700 -11.872 -3.937 1.00 3.00 N ATOM 154 CA ILE 40 -12.797 -12.005 -2.977 1.00 3.00 C ATOM 155 C ILE 40 -13.851 -10.945 -3.229 1.00 3.00 C ATOM 156 O ILE 40 -13.535 -9.762 -3.492 1.00 3.00 O ATOM 157 N VAL 41 -15.109 -11.384 -3.192 1.00 3.00 N ATOM 158 CA VAL 41 -16.258 -10.544 -3.515 1.00 3.00 C ATOM 159 C VAL 41 -15.893 -10.549 -2.035 1.00 3.00 C ATOM 160 O VAL 41 -15.034 -9.737 -1.639 1.00 3.00 O ATOM 161 N GLY 42 -16.481 -11.411 -1.224 1.00 3.00 N ATOM 162 CA GLY 42 -16.294 -11.660 0.208 1.00 3.00 C ATOM 163 C GLY 42 -16.626 -10.451 1.069 1.00 3.00 C ATOM 164 O GLY 42 -16.094 -10.248 2.173 1.00 3.00 O ATOM 165 N SER 43 -17.537 -9.623 0.560 1.00 3.00 N ATOM 166 CA SER 43 -17.772 -8.337 1.222 1.00 3.00 C ATOM 167 C SER 43 -18.205 -8.481 2.672 1.00 3.00 C ATOM 168 O SER 43 -17.721 -7.652 3.449 1.00 3.00 O ATOM 169 N GLN 44 -19.026 -9.428 3.082 1.00 9.00 N ATOM 170 CA GLN 44 -19.304 -9.549 4.509 1.00 9.00 C ATOM 171 C GLN 44 -18.049 -9.837 5.317 1.00 9.00 C ATOM 172 O GLN 44 -17.938 -9.436 6.468 1.00 9.00 O ATOM 173 N GLU 45 -17.111 -10.573 4.724 1.00 9.00 N ATOM 174 CA GLU 45 -15.888 -10.906 5.465 1.00 9.00 C ATOM 175 C GLU 45 -15.048 -9.676 5.764 1.00 9.00 C ATOM 176 O GLU 45 -14.562 -9.536 6.894 1.00 9.00 O ATOM 177 N ALA 46 -14.892 -8.827 4.771 1.00 9.00 N ATOM 178 CA ALA 46 -14.169 -7.564 4.872 1.00 9.00 C ATOM 179 C ALA 46 -14.834 -6.588 5.831 1.00 9.00 C ATOM 180 O ALA 46 -14.194 -5.957 6.684 1.00 9.00 O ATOM 181 N MET 47 -16.149 -6.433 5.703 1.00 3.00 N ATOM 182 CA MET 47 -16.843 -5.542 6.644 1.00 3.00 C ATOM 183 C MET 47 -16.633 -6.052 8.062 1.00 3.00 C ATOM 184 O MET 47 -16.427 -5.242 8.966 1.00 3.00 O ATOM 185 N ASP 48 -16.624 -7.361 8.286 1.00 3.00 N ATOM 186 CA ASP 48 -16.365 -7.856 9.625 1.00 3.00 C ATOM 187 C ASP 48 -14.924 -7.532 10.003 1.00 3.00 C ATOM 188 O ASP 48 -14.648 -7.122 11.136 1.00 3.00 O ATOM 189 N LYS 49 -13.985 -7.706 9.075 1.00 3.00 N ATOM 190 CA LYS 49 -12.587 -7.395 9.400 1.00 3.00 C ATOM 191 C LYS 49 -11.851 -8.260 8.385 1.00 3.00 C ATOM 192 O LYS 49 -12.142 -9.448 8.263 1.00 3.00 O ATOM 193 N ILE 50 -10.920 -7.642 7.655 1.00 3.00 N ATOM 194 CA ILE 50 -10.144 -8.304 6.606 1.00 3.00 C ATOM 195 C ILE 50 -8.655 -8.145 6.814 1.00 3.00 C ATOM 196 O ILE 50 -8.149 -7.095 7.231 1.00 3.00 O ATOM 197 N SER 52 -7.933 -9.190 6.472 1.00 3.00 N ATOM 198 CA SER 52 -6.503 -9.136 6.477 1.00 3.00 C ATOM 199 C SER 52 -5.998 -9.683 5.149 1.00 3.00 C ATOM 200 O SER 52 -6.295 -10.822 4.797 1.00 3.00 O ATOM 201 N ILE 53 -5.319 -8.830 4.380 1.00 3.00 N ATOM 202 CA ILE 53 -4.788 -9.167 3.048 1.00 3.00 C ATOM 203 C ILE 53 -5.253 -9.904 1.806 1.00 3.00 C ATOM 204 O ILE 53 -5.842 -10.988 1.912 1.00 3.00 O ATOM 205 N THR 54 -5.020 -9.325 0.631 1.00 3.00 N ATOM 206 CA THR 54 -5.482 -9.918 -0.623 1.00 3.00 C ATOM 207 C THR 54 -4.320 -10.172 -1.591 1.00 3.00 C ATOM 208 O THR 54 -3.196 -9.742 -1.340 1.00 3.00 O ATOM 209 N VAL 55 -4.602 -10.852 -2.715 1.00 3.00 N ATOM 210 CA VAL 55 -3.592 -11.096 -3.745 1.00 3.00 C ATOM 211 C VAL 55 -3.551 -9.810 -4.566 1.00 3.00 C ATOM 212 O VAL 55 -4.556 -9.112 -4.626 1.00 3.00 O ATOM 213 N PRO 56 -2.419 -9.490 -5.183 1.00 3.00 N ATOM 214 CA PRO 56 -2.279 -8.258 -5.979 1.00 3.00 C ATOM 215 C PRO 56 -3.560 -7.850 -6.689 1.00 3.00 C ATOM 216 O PRO 56 -4.063 -6.730 -6.517 1.00 3.00 O ATOM 217 N VAL 57 -4.095 -8.749 -7.493 1.00 3.00 N ATOM 218 CA VAL 57 -5.343 -8.469 -8.187 1.00 3.00 C ATOM 219 C VAL 57 -6.453 -8.947 -7.296 1.00 3.00 C ATOM 220 O VAL 57 -6.640 -10.157 -7.105 1.00 3.00 O ATOM 221 N ASP 58 -7.141 -8.009 -6.665 1.00 3.00 N ATOM 222 CA ASP 58 -8.274 -8.375 -5.819 1.00 3.00 C ATOM 223 C ASP 58 -9.485 -8.383 -4.896 1.00 3.00 C ATOM 224 O ASP 58 -10.247 -9.367 -4.826 1.00 3.00 O ATOM 225 N ILE 59 -9.672 -7.292 -4.185 1.00 3.00 N ATOM 226 CA ILE 59 -10.722 -7.206 -3.180 1.00 3.00 C ATOM 227 C ILE 59 -11.494 -5.887 -3.239 1.00 3.00 C ATOM 228 O ILE 59 -12.087 -5.495 -2.257 1.00 3.00 O ATOM 229 N SER 60 -11.508 -5.215 -4.390 1.00 3.00 N ATOM 230 CA SER 60 -12.268 -3.946 -4.539 1.00 3.00 C ATOM 231 C SER 60 -13.759 -4.141 -4.315 1.00 3.00 C ATOM 232 O SER 60 -14.454 -3.242 -3.905 1.00 3.00 O ATOM 233 N GLN 61 -14.226 -5.346 -4.597 1.00 3.00 N ATOM 234 CA GLN 61 -15.618 -5.710 -4.476 1.00 3.00 C ATOM 235 C GLN 61 -15.919 -6.518 -3.238 1.00 3.00 C ATOM 236 O GLN 61 -16.940 -7.205 -3.159 1.00 3.00 O ATOM 237 N VAL 62 -15.002 -6.446 -2.284 1.00 3.00 N ATOM 238 CA VAL 62 -15.208 -7.005 -0.979 1.00 3.00 C ATOM 239 C VAL 62 -15.220 -5.845 0.007 1.00 3.00 C ATOM 240 O VAL 62 -14.189 -5.300 0.372 1.00 3.00 O ATOM 241 N THR 63 -16.409 -5.431 0.412 1.00 3.00 N ATOM 242 CA THR 63 -16.530 -4.286 1.305 1.00 3.00 C ATOM 243 C THR 63 -16.177 -4.703 2.711 1.00 3.00 C ATOM 244 O THR 63 -16.899 -5.470 3.345 1.00 3.00 O ATOM 245 N GLU 64 -15.060 -4.189 3.190 1.00 3.00 N ATOM 246 CA GLU 64 -14.642 -4.434 4.553 1.00 3.00 C ATOM 247 C GLU 64 -14.893 -3.191 5.378 1.00 3.00 C ATOM 248 O GLU 64 -14.776 -2.078 4.881 1.00 3.00 O ATOM 249 N ASP 65 -15.180 -3.376 6.656 1.00 3.00 N ATOM 250 CA ASP 65 -15.263 -2.244 7.559 1.00 3.00 C ATOM 251 C ASP 65 -13.912 -1.685 7.200 1.00 3.00 C ATOM 252 O ASP 65 -13.808 -0.773 6.394 1.00 3.00 O ATOM 253 N THR 66 -12.863 -2.268 7.753 1.00 3.00 N ATOM 254 CA THR 66 -11.504 -1.834 7.445 1.00 3.00 C ATOM 255 C THR 66 -10.593 -3.085 7.419 1.00 3.00 C ATOM 256 O THR 66 -10.945 -4.117 7.985 1.00 3.00 O ATOM 257 N SER 67 -9.457 -2.994 6.738 1.00 3.00 N ATOM 258 CA SER 67 -8.507 -4.096 6.673 1.00 3.00 C ATOM 259 C SER 67 -7.712 -4.133 7.964 1.00 3.00 C ATOM 260 O SER 67 -7.368 -3.083 8.497 1.00 3.00 O ATOM 261 N LYS 68 -7.430 -5.338 8.471 1.00 9.00 N ATOM 262 CA LYS 68 -6.658 -5.476 9.722 1.00 9.00 C ATOM 263 C LYS 68 -5.150 -5.419 9.573 1.00 9.00 C ATOM 264 O LYS 68 -4.425 -5.515 10.572 1.00 9.00 O ATOM 265 N THR 69 -4.682 -5.322 8.332 1.00 3.00 N ATOM 266 CA THR 69 -3.261 -5.144 8.020 1.00 3.00 C ATOM 267 C THR 69 -3.208 -4.680 6.569 1.00 3.00 C ATOM 268 O THR 69 -4.101 -4.973 5.780 1.00 3.00 O ATOM 269 N LEU 70 -2.125 -4.013 6.198 1.00 3.00 N ATOM 270 CA LEU 70 -1.975 -3.475 4.860 1.00 3.00 C ATOM 271 C LEU 70 -0.977 -4.254 3.996 1.00 3.00 C ATOM 272 O LEU 70 -0.788 -3.918 2.837 1.00 3.00 O ATOM 273 N GLU 71 -0.283 -5.243 4.586 1.00 3.00 N ATOM 274 CA GLU 71 0.710 -6.045 3.864 1.00 3.00 C ATOM 275 C GLU 71 1.262 -6.633 2.597 1.00 3.00 C ATOM 276 O GLU 71 0.820 -7.734 2.172 1.00 3.00 O ATOM 277 N LEU 72 2.198 -5.904 1.991 1.00 3.00 N ATOM 278 CA LEU 72 2.949 -6.389 0.847 1.00 3.00 C ATOM 279 C LEU 72 4.430 -6.408 1.164 1.00 3.00 C ATOM 280 O LEU 72 4.980 -5.427 1.636 1.00 3.00 O ATOM 281 N LYS 73 5.019 -7.578 0.984 1.00 3.00 N ATOM 282 CA LYS 73 6.459 -7.765 0.948 1.00 3.00 C ATOM 283 C LYS 73 6.806 -8.008 -0.527 1.00 3.00 C ATOM 284 O LYS 73 6.260 -8.924 -1.155 1.00 3.00 O ATOM 285 N ALA 74 7.736 -7.212 -1.059 1.00 3.00 N ATOM 286 CA ALA 74 8.225 -7.307 -2.453 1.00 3.00 C ATOM 287 C ALA 74 6.821 -7.561 -3.209 1.00 3.00 C ATOM 288 O ALA 74 6.817 -8.012 -4.295 1.00 3.00 O ATOM 289 N GLU 75 5.717 -7.280 -2.502 1.00 3.00 N ATOM 290 CA GLU 75 4.340 -7.491 -3.198 1.00 3.00 C ATOM 291 C GLU 75 3.283 -6.575 -2.556 1.00 3.00 C ATOM 292 O GLU 75 3.389 -6.177 -1.366 1.00 3.00 O ATOM 293 N GLY 76 2.315 -6.277 -3.406 1.00 3.00 N ATOM 294 CA GLY 76 1.196 -5.334 -3.054 1.00 3.00 C ATOM 295 C GLY 76 -0.127 -5.798 -3.659 1.00 3.00 C ATOM 296 O GLY 76 -0.131 -6.559 -4.700 1.00 3.00 O ATOM 297 N VAL 77 -1.193 -5.371 -3.036 1.00 3.00 N ATOM 298 CA VAL 77 -2.901 -5.480 -3.210 1.00 3.00 C ATOM 299 C VAL 77 -4.401 -5.387 -2.961 1.00 3.00 C ATOM 300 O VAL 77 -5.207 -5.885 -3.736 1.00 3.00 O ATOM 301 N THR 78 -4.760 -4.732 -1.853 1.00 3.00 N ATOM 302 CA THR 78 -6.171 -4.602 -1.486 1.00 3.00 C ATOM 303 C THR 78 -6.321 -3.573 -0.378 1.00 3.00 C ATOM 304 O THR 78 -5.336 -3.183 0.246 1.00 3.00 O ATOM 305 N VAL 79 -7.546 -3.144 -0.107 1.00 3.00 N ATOM 306 CA VAL 79 -7.759 -2.170 0.958 1.00 3.00 C ATOM 307 C VAL 79 -9.147 -2.191 1.551 1.00 3.00 C ATOM 308 O VAL 79 -10.025 -2.917 1.083 1.00 3.00 O ATOM 309 N GLN 80 -9.332 -1.420 2.611 1.00 3.00 N ATOM 310 CA GLN 80 -10.636 -1.282 3.235 1.00 3.00 C ATOM 311 C GLN 80 -10.646 0.071 3.904 1.00 3.00 C ATOM 312 O GLN 80 -9.601 0.596 4.302 1.00 3.00 O ATOM 313 N PRO 81 -11.832 0.656 4.020 1.00 3.00 N ATOM 314 CA PRO 81 -11.970 1.968 4.638 1.00 3.00 C ATOM 315 C PRO 81 -12.989 1.866 5.750 1.00 3.00 C ATOM 316 O PRO 81 -14.011 1.181 5.610 1.00 3.00 O ATOM 317 N SER 82 -12.700 2.526 6.873 1.00 3.00 N ATOM 318 CA SER 82 -13.591 2.535 8.018 1.00 3.00 C ATOM 319 C SER 82 -12.359 2.877 8.563 1.00 3.00 C ATOM 320 O SER 82 -11.857 3.982 8.785 1.00 3.00 O ATOM 321 N THR 83 -11.658 1.746 8.550 1.00 3.00 N ATOM 322 CA THR 83 -10.227 1.692 8.915 1.00 3.00 C ATOM 323 C THR 83 -9.438 0.900 7.891 1.00 3.00 C ATOM 324 O THR 83 -9.826 -0.219 7.517 1.00 3.00 O ATOM 325 N VAL 84 -8.322 1.481 7.463 1.00 3.00 N ATOM 326 CA VAL 84 -7.399 0.838 6.548 1.00 3.00 C ATOM 327 C VAL 84 -5.972 1.027 7.047 1.00 3.00 C ATOM 328 O VAL 84 -5.498 2.151 7.256 1.00 3.00 O ATOM 329 N LYS 85 -5.301 -0.093 7.197 1.00 3.00 N ATOM 330 CA LYS 85 -3.937 -0.162 7.618 1.00 3.00 C ATOM 331 C LYS 85 -3.113 -0.707 6.462 1.00 3.00 C ATOM 332 O LYS 85 -3.272 -1.861 6.066 1.00 3.00 O ATOM 333 N VAL 86 -2.285 0.147 5.882 1.00 3.00 N ATOM 334 CA VAL 86 -1.642 -0.108 4.593 1.00 3.00 C ATOM 335 C VAL 86 -2.236 -0.858 3.424 1.00 3.00 C ATOM 336 O VAL 86 -3.008 -1.800 3.620 1.00 3.00 O ATOM 337 N ASN 87 -1.894 -0.449 2.215 1.00 3.00 N ATOM 338 CA ASN 87 -2.409 -1.111 1.020 1.00 3.00 C ATOM 339 C ASN 87 -1.309 -1.217 -0.041 1.00 3.00 C ATOM 340 O ASN 87 -0.286 -0.535 0.041 1.00 3.00 O ATOM 341 N LEU 88 -1.513 -2.081 -1.040 1.00 3.00 N ATOM 342 CA LEU 88 -0.507 -2.226 -2.105 1.00 3.00 C ATOM 343 C LEU 88 -0.235 -0.874 -2.763 1.00 3.00 C ATOM 344 O LEU 88 -0.798 0.147 -2.346 1.00 3.00 O ATOM 345 N LYS 89 0.617 -0.858 -3.783 1.00 3.00 N ATOM 346 CA LYS 89 1.001 0.387 -4.467 1.00 3.00 C ATOM 347 C LYS 89 -0.119 1.185 -5.146 1.00 3.00 C ATOM 348 O LYS 89 -0.232 2.402 -4.938 1.00 3.00 O ATOM 349 N VAL 90 -0.935 0.509 -5.953 1.00 3.00 N ATOM 350 CA VAL 90 -2.027 1.178 -6.657 1.00 3.00 C ATOM 351 C VAL 90 -3.202 1.520 -5.755 1.00 3.00 C ATOM 352 O VAL 90 -3.523 2.699 -5.559 1.00 3.00 O ATOM 353 N THR 91 -3.845 0.487 -5.214 1.00 3.00 N ATOM 354 CA THR 91 -4.988 0.662 -4.321 1.00 3.00 C ATOM 355 C THR 91 -6.199 0.499 -3.425 1.00 3.00 C ATOM 356 O THR 91 -6.606 -0.641 -3.149 1.00 3.00 O ATOM 357 N GLN 92 -6.773 1.611 -2.977 1.00 3.00 N ATOM 358 CA GLN 92 -7.926 1.532 -2.098 1.00 3.00 C ATOM 359 C GLN 92 -9.049 2.452 -2.490 1.00 3.00 C ATOM 360 O GLN 92 -8.841 3.534 -3.020 1.00 3.00 O ATOM 361 N LYS 93 -10.253 2.000 -2.191 1.00 3.00 N ATOM 362 CA LYS 93 -11.446 2.807 -2.332 1.00 3.00 C ATOM 363 C LYS 93 -12.178 2.822 -1.016 1.00 3.00 C ATOM 364 O LYS 93 -11.862 2.052 -0.115 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 340 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 77.32 41.6 166 97.6 170 ARMSMC SECONDARY STRUCTURE . . 73.07 45.3 106 100.0 106 ARMSMC SURFACE . . . . . . . . 79.06 42.5 113 97.4 116 ARMSMC BURIED . . . . . . . . 73.47 39.6 53 98.1 54 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 66 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 16.49 (Number of atoms: 85) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 16.49 85 98.8 86 CRMSCA CRN = ALL/NP . . . . . 0.1940 CRMSCA SECONDARY STRUCTURE . . 16.12 53 100.0 53 CRMSCA SURFACE . . . . . . . . 17.18 58 98.3 59 CRMSCA BURIED . . . . . . . . 14.91 27 100.0 27 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 16.38 340 79.8 426 CRMSMC SECONDARY STRUCTURE . . 15.98 212 80.3 264 CRMSMC SURFACE . . . . . . . . 16.99 232 79.5 292 CRMSMC BURIED . . . . . . . . 14.99 108 80.6 134 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 971 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 917 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 625 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 651 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 320 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 16.38 340 25.9 1315 CRMSALL SECONDARY STRUCTURE . . 15.98 212 25.3 837 CRMSALL SURFACE . . . . . . . . 16.99 232 26.2 887 CRMSALL BURIED . . . . . . . . 14.99 108 25.2 428 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.813 0.601 0.301 85 98.8 86 ERRCA SECONDARY STRUCTURE . . 11.415 0.590 0.295 53 100.0 53 ERRCA SURFACE . . . . . . . . 12.402 0.610 0.305 58 98.3 59 ERRCA BURIED . . . . . . . . 10.550 0.583 0.291 27 100.0 27 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.711 0.598 0.299 340 79.8 426 ERRMC SECONDARY STRUCTURE . . 11.275 0.586 0.293 212 80.3 264 ERRMC SURFACE . . . . . . . . 12.253 0.606 0.303 232 79.5 292 ERRMC BURIED . . . . . . . . 10.547 0.579 0.290 108 80.6 134 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 971 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 917 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 625 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 651 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 320 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.711 0.598 0.299 340 25.9 1315 ERRALL SECONDARY STRUCTURE . . 11.275 0.586 0.293 212 25.3 837 ERRALL SURFACE . . . . . . . . 12.253 0.606 0.303 232 26.2 887 ERRALL BURIED . . . . . . . . 10.547 0.579 0.290 108 25.2 428 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 21 85 86 DISTCA CA (P) 0.00 0.00 0.00 2.33 24.42 86 DISTCA CA (RMS) 0.00 0.00 0.00 4.63 8.07 DISTCA ALL (N) 0 0 0 7 83 340 1315 DISTALL ALL (P) 0.00 0.00 0.00 0.53 6.31 1315 DISTALL ALL (RMS) 0.00 0.00 0.00 4.30 7.91 DISTALL END of the results output