####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 84 ( 336), selected 84 , name T0572AL396_1-D1 # Molecule2: number of CA atoms 86 ( 1315), selected 84 , name T0572-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0572AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 73 21 - 93 4.99 6.02 LCS_AVERAGE: 82.82 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 36 - 56 1.97 6.28 LCS_AVERAGE: 14.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 41 - 53 0.94 8.78 LCS_AVERAGE: 8.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 84 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 10 K 10 3 4 24 3 4 4 4 4 6 9 11 11 11 12 13 13 18 18 20 23 41 43 59 LCS_GDT S 11 S 11 3 4 54 3 4 4 4 4 6 9 11 11 12 13 26 37 40 45 59 60 70 75 80 LCS_GDT V 12 V 12 3 4 57 3 4 4 4 6 11 15 20 26 30 34 45 51 67 72 75 80 81 81 82 LCS_GDT P 13 P 13 3 4 58 1 3 3 7 9 10 15 20 27 34 49 60 65 70 73 77 80 81 81 82 LCS_GDT V 14 V 14 3 4 62 1 3 4 5 7 11 15 20 26 32 48 57 65 70 73 78 80 81 81 82 LCS_GDT K 15 K 15 6 7 66 4 5 6 9 14 16 21 25 33 45 55 62 66 70 73 78 80 81 81 82 LCS_GDT L 16 L 16 6 7 66 4 5 6 9 11 16 18 25 33 40 52 62 66 70 73 78 80 81 81 82 LCS_GDT E 17 E 17 6 7 66 4 5 6 8 11 13 20 25 33 45 52 61 66 70 73 78 80 81 81 82 LCS_GDT L 18 L 18 6 7 67 4 5 6 8 9 12 15 21 25 33 48 61 66 70 73 78 80 81 81 82 LCS_GDT T 19 T 19 6 7 67 5 5 6 8 9 12 15 25 31 40 55 62 66 70 73 78 80 81 81 82 LCS_GDT G 20 G 20 6 7 67 3 4 6 6 8 12 13 19 24 33 42 50 66 70 73 78 80 81 81 82 LCS_GDT D 21 D 21 3 7 73 3 3 6 8 9 13 17 20 29 44 56 62 66 70 73 78 80 81 81 82 LCS_GDT K 22 K 22 4 7 73 3 5 6 6 6 19 25 34 43 51 57 62 66 70 73 78 80 81 81 82 LCS_GDT A 23 A 23 4 7 73 3 4 5 8 9 12 22 33 39 50 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 24 S 24 4 7 73 3 4 5 8 9 12 22 33 39 49 57 62 66 70 73 78 80 81 81 82 LCS_GDT N 25 N 25 4 7 73 3 4 6 6 9 13 17 35 47 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 26 V 26 4 7 73 3 6 11 16 23 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 27 S 27 4 7 73 5 5 6 11 20 27 32 36 44 52 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 28 S 28 4 7 73 5 6 11 17 23 28 32 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT I 29 I 29 4 7 73 5 5 9 17 23 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 30 S 30 4 7 73 5 5 10 14 20 27 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT Y 31 Y 31 3 7 73 3 3 11 15 21 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 32 S 32 4 6 73 3 9 14 17 22 29 36 40 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT F 33 F 33 4 6 73 3 4 12 17 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT D 34 D 34 4 6 73 3 4 4 8 8 13 19 28 30 37 55 58 61 65 73 78 80 81 81 82 LCS_GDT R 35 R 35 4 18 73 3 5 13 17 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT G 36 G 36 5 21 73 4 6 11 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT H 37 H 37 5 21 73 3 5 10 14 23 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 38 V 38 5 21 73 4 6 11 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT T 39 T 39 5 21 73 4 5 10 14 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT I 40 I 40 5 21 73 4 5 10 14 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 41 V 41 13 21 73 4 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT G 42 G 42 13 21 73 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 43 S 43 13 21 73 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT Q 44 Q 44 13 21 73 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT E 45 E 45 13 21 73 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT A 46 A 46 13 21 73 4 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT M 47 M 47 13 21 73 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT D 48 D 48 13 21 73 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT K 49 K 49 13 21 73 3 10 14 17 22 29 36 44 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT I 50 I 50 13 21 73 5 10 14 17 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT D 51 D 51 13 21 73 3 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 52 S 52 13 21 73 0 10 14 17 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT I 53 I 53 13 21 73 4 9 14 17 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT T 54 T 54 8 21 73 4 7 9 17 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 55 V 55 8 21 73 4 7 11 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT P 56 P 56 8 21 73 5 6 11 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 57 V 57 8 20 73 5 7 11 17 23 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT D 58 D 58 8 19 73 5 7 11 17 23 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT I 59 I 59 8 19 73 5 7 10 17 22 27 32 45 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 60 S 60 8 19 73 5 7 9 12 21 27 32 42 49 52 57 62 66 70 73 78 80 81 81 82 LCS_GDT Q 61 Q 61 4 19 73 3 5 10 17 22 27 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 62 V 62 4 19 73 3 6 11 17 23 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT T 63 T 63 4 11 73 4 4 4 9 9 10 10 12 19 21 25 29 42 51 59 72 77 79 81 82 LCS_GDT E 64 E 64 5 11 73 4 5 7 9 10 14 18 23 29 37 42 50 55 69 73 78 80 81 81 82 LCS_GDT D 65 D 65 8 11 73 4 7 8 9 11 14 18 22 27 33 42 50 55 63 73 78 80 81 81 82 LCS_GDT T 66 T 66 8 11 73 4 7 8 9 11 14 18 22 30 36 44 51 65 70 73 78 80 81 81 82 LCS_GDT S 67 S 67 8 11 73 3 7 8 9 11 14 18 23 30 35 42 51 64 70 73 78 80 81 81 82 LCS_GDT K 68 K 68 8 11 73 3 5 7 9 10 14 18 21 26 31 41 52 64 70 73 78 80 81 81 82 LCS_GDT T 69 T 69 8 11 73 3 7 8 9 10 13 15 23 29 35 40 51 60 65 73 78 80 81 81 82 LCS_GDT L 70 L 70 8 11 73 3 7 8 9 11 14 18 23 32 37 52 58 64 70 73 78 80 81 81 82 LCS_GDT E 71 E 71 8 11 73 3 7 8 9 11 14 18 23 29 35 39 44 56 65 73 78 80 81 81 82 LCS_GDT L 72 L 72 8 11 73 3 7 8 9 11 14 18 22 29 35 42 50 55 69 73 78 80 81 81 82 LCS_GDT K 73 K 73 7 11 73 4 5 8 9 11 14 18 22 29 35 42 50 55 61 73 78 80 81 81 82 LCS_GDT A 74 A 74 4 11 73 4 4 6 13 16 22 29 34 42 52 57 62 66 70 73 78 80 81 81 82 LCS_GDT E 75 E 75 4 7 73 4 4 10 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT G 76 G 76 5 7 73 4 4 8 14 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 77 V 77 5 7 73 4 4 5 10 13 27 36 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT T 78 T 78 5 7 73 4 4 8 10 20 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 79 V 79 5 7 73 4 5 7 8 10 16 30 44 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT Q 80 Q 80 5 11 73 3 5 10 14 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT P 81 P 81 3 11 73 2 9 14 17 22 30 37 44 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT S 82 S 82 9 12 73 3 4 8 10 16 28 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT T 83 T 83 9 12 73 3 7 8 10 16 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 84 V 84 9 12 73 3 7 8 10 16 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT K 85 K 85 9 12 73 3 7 8 10 16 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 86 V 86 9 12 73 5 5 8 9 15 22 31 39 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT N 87 N 87 9 12 73 5 7 8 10 15 27 35 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT L 88 L 88 9 12 73 5 7 8 10 15 27 35 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT K 89 K 89 9 12 73 5 7 8 10 15 27 35 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT V 90 V 90 9 12 73 5 7 8 10 15 27 35 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT T 91 T 91 6 12 73 3 5 6 14 22 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT Q 92 Q 92 4 12 73 3 4 11 14 20 30 37 44 51 54 57 62 66 70 73 78 80 81 81 82 LCS_GDT K 93 K 93 4 12 73 0 5 11 16 21 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 LCS_AVERAGE LCS_A: 35.18 ( 8.00 14.73 82.82 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 10 14 17 23 30 37 46 51 54 57 62 66 70 73 78 80 81 81 82 GDT PERCENT_AT 5.81 11.63 16.28 19.77 26.74 34.88 43.02 53.49 59.30 62.79 66.28 72.09 76.74 81.40 84.88 90.70 93.02 94.19 94.19 95.35 GDT RMS_LOCAL 0.20 0.62 0.92 1.17 1.81 2.20 2.52 2.93 3.09 3.22 3.48 3.82 4.14 4.45 4.65 5.07 5.17 5.26 5.26 5.38 GDT RMS_ALL_AT 7.52 9.76 8.29 8.04 6.22 6.59 6.44 6.24 6.25 6.23 6.17 6.11 6.06 6.00 5.98 5.98 5.95 5.93 5.93 5.93 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 10 K 10 19.121 5 0.042 0.042 21.671 0.000 0.000 LGA S 11 S 11 13.573 2 0.655 0.655 15.088 0.000 0.000 LGA V 12 V 12 10.393 3 0.571 0.571 11.563 1.071 0.612 LGA P 13 P 13 7.895 3 0.597 0.597 8.922 6.071 3.469 LGA V 14 V 14 8.153 3 0.501 0.501 8.153 10.595 6.054 LGA K 15 K 15 8.059 5 0.617 0.617 8.795 4.881 2.169 LGA L 16 L 16 8.048 4 0.329 0.329 8.048 7.262 3.631 LGA E 17 E 17 8.249 5 0.128 0.128 8.405 4.762 2.116 LGA L 18 L 18 8.576 4 0.125 0.125 8.691 3.810 1.905 LGA T 19 T 19 7.729 3 0.035 0.035 7.915 7.143 4.082 LGA G 20 G 20 8.618 0 0.039 0.039 8.618 7.024 7.024 LGA D 21 D 21 7.555 4 0.197 0.197 8.068 9.643 4.821 LGA K 22 K 22 6.821 5 0.669 0.669 6.978 13.333 5.926 LGA A 23 A 23 6.876 1 0.099 0.099 6.876 15.238 12.190 LGA S 24 S 24 7.219 2 0.642 0.642 7.693 10.119 6.746 LGA N 25 N 25 5.526 4 0.083 0.083 5.526 30.595 15.298 LGA V 26 V 26 1.538 3 0.588 0.588 4.879 54.762 31.293 LGA S 27 S 27 6.592 2 0.604 0.604 6.592 20.833 13.889 LGA S 28 S 28 4.277 2 0.013 0.013 5.011 34.405 22.937 LGA I 29 I 29 3.654 4 0.026 0.026 3.654 48.452 24.226 LGA S 30 S 30 3.198 2 0.606 0.606 5.298 44.048 29.365 LGA Y 31 Y 31 3.057 8 0.034 0.034 3.057 67.262 22.421 LGA S 32 S 32 4.706 2 0.686 0.686 4.706 38.810 25.873 LGA F 33 F 33 3.618 7 0.291 0.291 4.457 40.238 14.632 LGA D 34 D 34 7.380 4 0.052 0.052 7.380 15.476 7.738 LGA R 35 R 35 2.807 7 0.570 0.570 4.299 49.048 17.835 LGA G 36 G 36 2.289 0 0.574 0.574 3.424 67.976 67.976 LGA H 37 H 37 3.529 6 0.121 0.121 3.529 53.810 21.524 LGA V 38 V 38 1.530 3 0.123 0.123 3.788 61.429 35.102 LGA T 39 T 39 3.111 3 0.590 0.590 3.111 55.476 31.701 LGA I 40 I 40 2.201 4 0.050 0.050 2.626 69.048 34.524 LGA V 41 V 41 0.926 3 0.139 0.139 1.071 85.952 49.116 LGA G 42 G 42 1.442 0 0.045 0.045 1.442 83.690 83.690 LGA S 43 S 43 0.614 2 0.140 0.140 1.624 86.071 57.381 LGA Q 44 Q 44 0.837 5 0.098 0.098 1.961 83.810 37.249 LGA E 45 E 45 1.977 5 0.052 0.052 2.848 69.048 30.688 LGA A 46 A 46 2.613 1 0.134 0.134 2.614 59.048 47.238 LGA M 47 M 47 2.228 4 0.069 0.069 2.834 60.952 30.476 LGA D 48 D 48 3.012 4 0.022 0.022 4.105 46.905 23.452 LGA K 49 K 49 4.412 5 0.260 0.260 4.412 38.690 17.196 LGA I 50 I 50 3.715 4 0.094 0.094 3.965 46.667 23.333 LGA D 51 D 51 2.188 4 0.618 0.618 3.126 59.167 29.583 LGA S 52 S 52 2.930 2 0.641 0.641 4.128 48.571 32.381 LGA I 53 I 53 3.712 4 0.028 0.028 4.657 37.381 18.690 LGA T 54 T 54 3.144 3 0.187 0.187 3.144 59.405 33.946 LGA V 55 V 55 2.445 3 0.169 0.169 3.203 59.167 33.810 LGA P 56 P 56 1.514 3 0.026 0.026 2.177 70.833 40.476 LGA V 57 V 57 2.581 3 0.006 0.006 2.827 59.048 33.741 LGA D 58 D 58 3.638 4 0.086 0.086 4.357 41.905 20.952 LGA I 59 I 59 4.574 4 0.266 0.266 4.872 34.286 17.143 LGA S 60 S 60 6.041 2 0.603 0.603 7.724 16.786 11.190 LGA Q 61 Q 61 3.581 5 0.223 0.223 3.929 43.333 19.259 LGA V 62 V 62 3.537 3 0.052 0.052 4.154 41.905 23.946 LGA T 63 T 63 12.319 3 0.583 0.583 13.084 0.000 0.000 LGA E 64 E 64 10.747 5 0.017 0.017 10.747 0.357 0.159 LGA D 65 D 65 11.438 4 0.031 0.031 11.438 0.000 0.000 LGA T 66 T 66 9.128 3 0.166 0.166 9.757 0.952 0.544 LGA S 67 S 67 9.492 2 0.082 0.082 9.637 1.190 0.794 LGA K 68 K 68 8.829 5 0.096 0.096 8.998 2.857 1.270 LGA T 69 T 69 9.887 3 0.408 0.408 10.396 0.595 0.340 LGA L 70 L 70 8.550 4 0.095 0.095 9.322 2.143 1.071 LGA E 71 E 71 10.443 5 0.034 0.034 10.443 0.357 0.159 LGA L 72 L 72 9.688 4 0.051 0.051 10.727 0.119 0.060 LGA K 73 K 73 10.639 5 0.661 0.661 10.639 0.476 0.212 LGA A 74 A 74 6.456 1 0.131 0.131 7.733 19.167 15.333 LGA E 75 E 75 3.338 5 0.388 0.388 4.552 45.833 20.370 LGA G 76 G 76 1.215 0 0.653 0.653 4.302 68.452 68.452 LGA V 77 V 77 3.942 3 0.171 0.171 3.942 55.595 31.769 LGA T 78 T 78 3.163 3 0.064 0.064 5.723 39.524 22.585 LGA V 79 V 79 4.230 3 0.580 0.580 4.230 48.810 27.891 LGA Q 80 Q 80 2.673 5 0.080 0.080 4.799 45.714 20.317 LGA P 81 P 81 4.361 3 0.611 0.611 4.529 51.548 29.456 LGA S 82 S 82 2.929 2 0.627 0.627 2.929 60.952 40.635 LGA T 83 T 83 3.083 3 0.125 0.125 3.297 50.000 28.571 LGA V 84 V 84 3.243 3 0.024 0.024 3.243 50.000 28.571 LGA K 85 K 85 2.939 5 0.031 0.031 3.252 51.786 23.016 LGA V 86 V 86 4.292 3 0.212 0.212 4.292 38.690 22.109 LGA N 87 N 87 3.913 4 0.054 0.054 4.035 41.786 20.893 LGA L 88 L 88 3.766 4 0.107 0.107 3.972 43.333 21.667 LGA K 89 K 89 3.637 5 0.034 0.034 3.637 45.000 20.000 LGA V 90 V 90 3.607 3 0.042 0.042 3.691 48.452 27.687 LGA T 91 T 91 2.448 3 0.028 0.028 2.772 62.857 35.918 LGA Q 92 Q 92 4.621 5 0.413 0.413 4.621 38.929 17.302 LGA K 93 K 93 2.963 5 0.070 0.070 4.005 46.905 20.847 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 84 336 336 100.00 630 336 53.33 86 SUMMARY(RMSD_GDC): 5.900 5.824 5.824 35.437 20.233 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 84 86 4.0 46 2.93 43.895 37.546 1.517 LGA_LOCAL RMSD: 2.931 Number of atoms: 46 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.242 Number of assigned atoms: 84 Std_ASGN_ATOMS RMSD: 5.900 Standard rmsd on all 84 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.099971 * X + -0.771575 * Y + -0.628234 * Z + 8.225173 Y_new = 0.989458 * X + -0.143583 * Y + 0.018892 * Z + 11.421652 Z_new = -0.104780 * X + -0.619723 * Y + 0.777795 * Z + 14.567625 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.671490 0.104973 -0.672767 [DEG: 95.7693 6.0145 -38.5467 ] ZXZ: -1.600858 0.679646 -2.974101 [DEG: -91.7224 38.9409 -170.4034 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0572AL396_1-D1 REMARK 2: T0572-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0572AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 84 86 4.0 46 2.93 37.546 5.90 REMARK ---------------------------------------------------------- MOLECULE T0572AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kps_A ATOM 1 N LYS 10 2.787 20.038 1.320 1.00 0.00 N ATOM 2 CA LYS 10 3.149 18.646 1.710 1.00 0.00 C ATOM 3 C LYS 10 3.323 17.818 0.439 1.00 0.00 C ATOM 4 O LYS 10 2.765 18.153 -0.606 1.00 0.00 O ATOM 5 N SER 11 4.087 16.735 0.538 1.00 0.00 N ATOM 6 CA SER 11 4.338 15.857 -0.615 1.00 0.00 C ATOM 7 C SER 11 5.057 14.578 -0.169 1.00 0.00 C ATOM 8 O SER 11 5.002 13.561 -0.861 1.00 0.00 O ATOM 9 N VAL 12 5.730 14.640 0.975 1.00 0.00 N ATOM 10 CA VAL 12 6.464 13.487 1.507 1.00 0.00 C ATOM 11 C VAL 12 5.492 12.382 1.910 1.00 0.00 C ATOM 12 O VAL 12 5.853 11.205 1.940 1.00 0.00 O ATOM 13 N PRO 13 4.261 12.771 2.223 1.00 0.00 N ATOM 14 CA PRO 13 3.236 11.802 2.625 1.00 0.00 C ATOM 15 C PRO 13 2.900 10.869 1.455 1.00 0.00 C ATOM 16 O PRO 13 2.781 9.655 1.632 1.00 0.00 O ATOM 17 N VAL 14 2.739 11.447 0.271 1.00 0.00 N ATOM 18 CA VAL 14 2.412 10.679 -0.944 1.00 0.00 C ATOM 19 C VAL 14 3.686 10.072 -1.559 1.00 0.00 C ATOM 20 O VAL 14 3.803 9.966 -2.779 1.00 0.00 O ATOM 21 N LYS 15 4.621 9.672 -0.703 1.00 0.00 N ATOM 22 CA LYS 15 5.890 9.062 -1.164 1.00 0.00 C ATOM 23 C LYS 15 5.676 7.591 -1.535 1.00 0.00 C ATOM 24 O LYS 15 6.437 7.017 -2.315 1.00 0.00 O ATOM 25 N LEU 16 4.639 6.991 -0.963 1.00 0.00 N ATOM 26 CA LEU 16 4.302 5.566 -1.214 1.00 0.00 C ATOM 27 C LEU 16 2.829 5.442 -1.669 1.00 0.00 C ATOM 28 O LEU 16 2.026 4.874 -0.930 1.00 0.00 O ATOM 29 N GLU 17 2.481 5.934 -2.826 1.00 0.00 N ATOM 30 CA GLU 17 1.063 5.860 -3.335 1.00 0.00 C ATOM 31 C GLU 17 0.677 4.428 -3.725 1.00 0.00 C ATOM 32 O GLU 17 0.936 3.968 -4.838 1.00 0.00 O ATOM 33 N LEU 18 0.048 3.731 -2.783 1.00 0.00 N ATOM 34 CA LEU 18 -0.387 2.341 -3.016 1.00 0.00 C ATOM 35 C LEU 18 -1.690 2.335 -3.826 1.00 0.00 C ATOM 36 O LEU 18 -2.431 3.318 -3.834 1.00 0.00 O ATOM 37 N THR 19 -1.969 1.213 -4.481 1.00 0.00 N ATOM 38 CA THR 19 -3.183 1.030 -5.314 1.00 0.00 C ATOM 39 C THR 19 -3.999 -0.129 -4.761 1.00 0.00 C ATOM 40 O THR 19 -3.454 -1.136 -4.308 1.00 0.00 O ATOM 41 N GLY 20 -5.319 0.028 -4.793 1.00 0.00 N ATOM 42 CA GLY 20 -6.273 -0.973 -4.287 1.00 0.00 C ATOM 43 C GLY 20 -7.220 -1.406 -5.416 1.00 0.00 C ATOM 44 O GLY 20 -7.464 -0.663 -6.365 1.00 0.00 O ATOM 45 N ASP 21 -7.741 -2.623 -5.299 1.00 0.00 N ATOM 46 CA ASP 21 -8.661 -3.189 -6.301 1.00 0.00 C ATOM 47 C ASP 21 -9.691 -4.122 -5.638 1.00 0.00 C ATOM 48 O ASP 21 -9.856 -4.143 -4.417 1.00 0.00 O ATOM 49 N LYS 22 -10.375 -4.898 -6.474 1.00 0.00 N ATOM 50 CA LYS 22 -11.440 -5.844 -5.995 1.00 0.00 C ATOM 51 C LYS 22 -12.567 -5.131 -5.160 1.00 0.00 C ATOM 52 O LYS 22 -13.676 -5.637 -4.993 1.00 0.00 O ATOM 53 N ALA 23 -12.229 -3.948 -4.656 1.00 0.00 N ATOM 54 CA ALA 23 -13.159 -3.155 -3.821 1.00 0.00 C ATOM 55 C ALA 23 -14.641 -3.241 -4.337 1.00 0.00 C ATOM 56 O ALA 23 -14.856 -2.907 -5.503 1.00 0.00 O ATOM 57 N SER 24 -15.588 -3.683 -3.557 1.00 0.00 N ATOM 58 CA SER 24 -17.006 -3.782 -4.035 1.00 0.00 C ATOM 59 C SER 24 -17.478 -2.509 -4.743 1.00 0.00 C ATOM 60 O SER 24 -17.029 -1.393 -4.482 1.00 0.00 O ATOM 61 N ASN 25 -18.399 -2.718 -5.678 1.00 0.00 N ATOM 62 CA ASN 25 -18.943 -1.620 -6.448 1.00 0.00 C ATOM 63 C ASN 25 -19.802 -0.718 -5.562 1.00 0.00 C ATOM 64 O ASN 25 -20.141 0.392 -5.973 1.00 0.00 O ATOM 65 N VAL 26 -20.179 -1.199 -4.383 1.00 0.00 N ATOM 66 CA VAL 26 -21.020 -0.473 -3.408 1.00 0.00 C ATOM 67 C VAL 26 -20.192 0.022 -2.212 1.00 0.00 C ATOM 68 O VAL 26 -20.742 0.620 -1.287 1.00 0.00 O ATOM 69 N SER 27 -18.888 -0.236 -2.234 1.00 0.00 N ATOM 70 CA SER 27 -17.988 0.154 -1.128 1.00 0.00 C ATOM 71 C SER 27 -16.842 1.008 -1.670 1.00 0.00 C ATOM 72 O SER 27 -16.442 0.870 -2.825 1.00 0.00 O ATOM 73 N SER 28 -16.326 1.896 -0.825 1.00 0.00 N ATOM 74 CA SER 28 -15.216 2.793 -1.216 1.00 0.00 C ATOM 75 C SER 28 -14.326 3.069 -0.008 1.00 0.00 C ATOM 76 O SER 28 -14.684 2.813 1.142 1.00 0.00 O ATOM 77 N ILE 29 -13.131 3.575 -0.298 1.00 0.00 N ATOM 78 CA ILE 29 -12.128 3.880 0.748 1.00 0.00 C ATOM 79 C ILE 29 -11.730 5.376 0.676 1.00 0.00 C ATOM 80 O ILE 29 -11.629 5.967 -0.399 1.00 0.00 O ATOM 81 N SER 30 -11.490 5.958 1.846 1.00 0.00 N ATOM 82 CA SER 30 -11.061 7.376 1.917 1.00 0.00 C ATOM 83 C SER 30 -9.652 7.566 1.267 1.00 0.00 C ATOM 84 O SER 30 -8.917 8.478 1.639 1.00 0.00 O ATOM 85 N TYR 31 -9.305 6.696 0.323 1.00 0.00 N ATOM 86 CA TYR 31 -7.985 6.726 -0.449 1.00 0.00 C ATOM 87 C TYR 31 -7.081 5.531 -0.063 1.00 0.00 C ATOM 88 O TYR 31 -7.237 5.027 1.049 1.00 0.00 O ATOM 89 N SER 32 -6.141 5.139 -0.878 1.00 0.00 N ATOM 90 CA SER 32 -5.195 4.018 -0.505 1.00 0.00 C ATOM 91 C SER 32 -4.326 4.369 0.713 1.00 0.00 C ATOM 92 O SER 32 -3.393 3.647 1.063 1.00 0.00 O ATOM 93 N PHE 33 -4.665 5.478 1.364 1.00 0.00 N ATOM 94 CA PHE 33 -3.921 5.963 2.559 1.00 0.00 C ATOM 95 C PHE 33 -2.407 5.538 2.510 1.00 0.00 C ATOM 96 O PHE 33 -2.078 4.502 3.087 1.00 0.00 O ATOM 97 N ASP 34 -1.553 6.257 1.833 1.00 0.00 N ATOM 98 CA ASP 34 -0.094 5.856 1.690 1.00 0.00 C ATOM 99 C ASP 34 0.552 5.482 3.029 1.00 0.00 C ATOM 100 O ASP 34 1.309 4.518 3.149 1.00 0.00 O ATOM 101 N ARG 35 0.208 6.262 4.049 1.00 0.00 N ATOM 102 CA ARG 35 0.764 5.995 5.439 1.00 0.00 C ATOM 103 C ARG 35 1.464 4.588 5.539 1.00 0.00 C ATOM 104 O ARG 35 0.819 3.540 5.535 1.00 0.00 O ATOM 105 N GLY 36 2.792 4.620 5.545 1.00 0.00 N ATOM 106 CA GLY 36 3.596 3.363 5.605 1.00 0.00 C ATOM 107 C GLY 36 5.054 3.698 5.978 1.00 0.00 C ATOM 108 O GLY 36 5.605 4.712 5.547 1.00 0.00 O ATOM 109 N HIS 37 5.673 2.814 6.753 1.00 0.00 N ATOM 110 CA HIS 37 7.080 2.950 7.179 1.00 0.00 C ATOM 111 C HIS 37 7.974 2.040 6.341 1.00 0.00 C ATOM 112 O HIS 37 7.495 1.187 5.592 1.00 0.00 O ATOM 113 N VAL 38 9.281 2.232 6.478 1.00 0.00 N ATOM 114 CA VAL 38 10.277 1.428 5.718 1.00 0.00 C ATOM 115 C VAL 38 11.470 1.055 6.617 1.00 0.00 C ATOM 116 O VAL 38 12.012 1.906 7.322 1.00 0.00 O ATOM 117 N THR 39 11.867 -0.212 6.578 1.00 0.00 N ATOM 118 CA THR 39 13.010 -0.707 7.381 1.00 0.00 C ATOM 119 C THR 39 13.917 -1.600 6.529 1.00 0.00 C ATOM 120 O THR 39 14.812 -2.249 7.069 1.00 0.00 O ATOM 121 N ILE 40 13.664 -1.659 5.226 1.00 0.00 N ATOM 122 CA ILE 40 14.444 -2.502 4.303 1.00 0.00 C ATOM 123 C ILE 40 15.528 -1.658 3.620 1.00 0.00 C ATOM 124 O ILE 40 15.326 -0.499 3.260 1.00 0.00 O ATOM 125 N VAL 41 16.688 -2.282 3.440 1.00 0.00 N ATOM 126 CA VAL 41 17.861 -1.633 2.807 1.00 0.00 C ATOM 127 C VAL 41 18.386 -2.483 1.656 1.00 0.00 C ATOM 128 O VAL 41 17.947 -3.615 1.449 1.00 0.00 O ATOM 129 N GLY 42 19.328 -1.924 0.904 1.00 0.00 N ATOM 130 CA GLY 42 19.916 -2.624 -0.241 1.00 0.00 C ATOM 131 C GLY 42 21.186 -1.921 -0.712 1.00 0.00 C ATOM 132 O GLY 42 21.665 -0.981 -0.079 1.00 0.00 O ATOM 133 N SER 43 21.709 -2.373 -1.848 1.00 0.00 N ATOM 134 CA SER 43 22.924 -1.817 -2.438 1.00 0.00 C ATOM 135 C SER 43 22.612 -0.506 -3.197 1.00 0.00 C ATOM 136 O SER 43 21.838 -0.587 -4.151 1.00 0.00 O ATOM 137 N GLN 44 23.158 0.625 -2.841 1.00 0.00 N ATOM 138 CA GLN 44 22.888 1.906 -3.589 1.00 0.00 C ATOM 139 C GLN 44 22.963 1.745 -5.126 1.00 0.00 C ATOM 140 O GLN 44 22.479 2.588 -5.882 1.00 0.00 O ATOM 141 N GLU 45 23.611 0.670 -5.561 1.00 0.00 N ATOM 142 CA GLU 45 23.767 0.396 -6.992 1.00 0.00 C ATOM 143 C GLU 45 22.396 0.146 -7.663 1.00 0.00 C ATOM 144 O GLU 45 22.066 0.802 -8.650 1.00 0.00 O ATOM 145 N ALA 46 21.627 -0.799 -7.133 1.00 0.00 N ATOM 146 CA ALA 46 20.298 -1.142 -7.691 1.00 0.00 C ATOM 147 C ALA 46 19.275 -0.062 -7.318 1.00 0.00 C ATOM 148 O ALA 46 18.179 -0.003 -7.876 1.00 0.00 O ATOM 149 N MET 47 19.634 0.764 -6.341 1.00 0.00 N ATOM 150 CA MET 47 18.709 1.838 -5.879 1.00 0.00 C ATOM 151 C MET 47 18.901 3.127 -6.693 1.00 0.00 C ATOM 152 O MET 47 17.986 3.934 -6.856 1.00 0.00 O ATOM 153 N ASP 48 20.135 3.330 -7.143 1.00 0.00 N ATOM 154 CA ASP 48 20.462 4.540 -7.918 1.00 0.00 C ATOM 155 C ASP 48 19.618 4.616 -9.214 1.00 0.00 C ATOM 156 O ASP 48 19.362 5.713 -9.711 1.00 0.00 O ATOM 157 N LYS 49 19.213 3.468 -9.747 1.00 0.00 N ATOM 158 CA LYS 49 18.412 3.382 -10.998 1.00 0.00 C ATOM 159 C LYS 49 16.994 2.847 -10.725 1.00 0.00 C ATOM 160 O LYS 49 16.295 2.417 -11.643 1.00 0.00 O ATOM 161 N ILE 50 16.591 2.873 -9.459 1.00 0.00 N ATOM 162 CA ILE 50 15.228 2.380 -9.058 1.00 0.00 C ATOM 163 C ILE 50 14.302 3.581 -8.751 1.00 0.00 C ATOM 164 O ILE 50 14.707 4.559 -8.121 1.00 0.00 O ATOM 165 N ASP 51 13.056 3.476 -9.201 1.00 0.00 N ATOM 166 CA ASP 51 12.032 4.526 -8.994 1.00 0.00 C ATOM 167 C ASP 51 10.839 3.958 -8.227 1.00 0.00 C ATOM 168 O ASP 51 10.865 2.829 -7.734 1.00 0.00 O ATOM 169 N SER 52 9.792 4.767 -8.126 1.00 0.00 N ATOM 170 CA SER 52 8.554 4.377 -7.432 1.00 0.00 C ATOM 171 C SER 52 7.629 3.601 -8.360 1.00 0.00 C ATOM 172 O SER 52 6.867 2.738 -7.925 1.00 0.00 O ATOM 173 N ILE 53 8.151 -0.234 -8.361 1.00 0.00 N ATOM 174 CA ILE 53 7.571 -1.001 -7.251 1.00 0.00 C ATOM 175 C ILE 53 6.103 -1.320 -7.562 1.00 0.00 C ATOM 176 O ILE 53 5.319 -0.416 -7.856 1.00 0.00 O ATOM 177 N THR 54 5.744 -2.597 -7.496 1.00 0.00 N ATOM 178 CA THR 54 4.374 -3.061 -7.771 1.00 0.00 C ATOM 179 C THR 54 3.635 -3.274 -6.446 1.00 0.00 C ATOM 180 O THR 54 3.703 -4.357 -5.864 1.00 0.00 O ATOM 181 N VAL 55 2.912 -2.253 -5.994 1.00 0.00 N ATOM 182 CA VAL 55 2.146 -2.303 -4.731 1.00 0.00 C ATOM 183 C VAL 55 0.671 -2.536 -5.026 1.00 0.00 C ATOM 184 O VAL 55 0.070 -1.812 -5.820 1.00 0.00 O ATOM 185 N PRO 56 0.094 -3.551 -4.393 1.00 0.00 N ATOM 186 CA PRO 56 -1.315 -3.886 -4.587 1.00 0.00 C ATOM 187 C PRO 56 -1.836 -4.654 -3.358 1.00 0.00 C ATOM 188 O PRO 56 -1.127 -5.476 -2.776 1.00 0.00 O ATOM 189 N VAL 57 -3.097 -4.413 -3.015 1.00 0.00 N ATOM 190 CA VAL 57 -3.748 -5.094 -1.869 1.00 0.00 C ATOM 191 C VAL 57 -5.021 -5.808 -2.367 1.00 0.00 C ATOM 192 O VAL 57 -5.794 -5.251 -3.147 1.00 0.00 O ATOM 193 N ASP 58 -5.231 -7.030 -1.890 1.00 0.00 N ATOM 194 CA ASP 58 -6.415 -7.829 -2.275 1.00 0.00 C ATOM 195 C ASP 58 -7.543 -7.636 -1.251 1.00 0.00 C ATOM 196 O ASP 58 -7.451 -8.125 -0.124 1.00 0.00 O ATOM 197 N ILE 59 -8.593 -6.922 -1.646 1.00 0.00 N ATOM 198 CA ILE 59 -9.754 -6.644 -0.782 1.00 0.00 C ATOM 199 C ILE 59 -10.878 -7.666 -1.037 1.00 0.00 C ATOM 200 O ILE 59 -12.049 -7.304 -1.145 1.00 0.00 O ATOM 201 N SER 60 -10.503 -8.939 -1.127 1.00 0.00 N ATOM 202 CA SER 60 -11.476 -10.019 -1.367 1.00 0.00 C ATOM 203 C SER 60 -12.245 -10.343 -0.087 1.00 0.00 C ATOM 204 O SER 60 -11.674 -10.921 0.837 1.00 0.00 O ATOM 205 N GLN 61 -13.521 -9.975 -0.034 1.00 0.00 N ATOM 206 CA GLN 61 -14.360 -10.248 1.135 1.00 0.00 C ATOM 207 C GLN 61 -14.135 -9.207 2.208 1.00 0.00 C ATOM 208 O GLN 61 -14.105 -9.531 3.395 1.00 0.00 O ATOM 209 N VAL 62 -13.947 -7.959 1.793 1.00 0.00 N ATOM 210 CA VAL 62 -13.700 -6.854 2.735 1.00 0.00 C ATOM 211 C VAL 62 -15.019 -6.166 3.138 1.00 0.00 C ATOM 212 O VAL 62 -15.645 -5.439 2.368 1.00 0.00 O ATOM 213 N THR 63 -12.854 -0.683 10.008 1.00 0.00 N ATOM 214 CA THR 63 -11.389 -0.533 9.879 1.00 0.00 C ATOM 215 C THR 63 -10.636 -1.812 10.312 1.00 0.00 C ATOM 216 O THR 63 -10.865 -2.351 11.395 1.00 0.00 O ATOM 217 N GLU 64 -9.752 -2.286 9.439 1.00 0.00 N ATOM 218 CA GLU 64 -8.955 -3.500 9.685 1.00 0.00 C ATOM 219 C GLU 64 -7.554 -3.379 9.060 1.00 0.00 C ATOM 220 O GLU 64 -7.317 -2.605 8.133 1.00 0.00 O ATOM 221 N ASP 65 -6.638 -4.195 9.572 1.00 0.00 N ATOM 222 CA ASP 65 -5.245 -4.223 9.064 1.00 0.00 C ATOM 223 C ASP 65 -5.150 -5.112 7.807 1.00 0.00 C ATOM 224 O ASP 65 -5.773 -6.170 7.728 1.00 0.00 O ATOM 225 N THR 66 -4.382 -4.648 6.826 1.00 0.00 N ATOM 226 CA THR 66 -4.212 -5.426 5.557 1.00 0.00 C ATOM 227 C THR 66 -2.722 -5.633 5.229 1.00 0.00 C ATOM 228 O THR 66 -1.883 -4.754 5.419 1.00 0.00 O ATOM 229 N SER 67 -2.417 -6.832 4.744 1.00 0.00 N ATOM 230 CA SER 67 -1.038 -7.205 4.388 1.00 0.00 C ATOM 231 C SER 67 -0.702 -6.707 2.976 1.00 0.00 C ATOM 232 O SER 67 -1.451 -6.941 2.027 1.00 0.00 O ATOM 233 N LYS 68 0.431 -6.024 2.852 1.00 0.00 N ATOM 234 CA LYS 68 0.859 -5.503 1.536 1.00 0.00 C ATOM 235 C LYS 68 1.610 -6.600 0.764 1.00 0.00 C ATOM 236 O LYS 68 2.628 -7.107 1.232 1.00 0.00 O ATOM 237 N THR 69 1.116 -6.933 -0.425 1.00 0.00 N ATOM 238 CA THR 69 1.740 -7.963 -1.283 1.00 0.00 C ATOM 239 C THR 69 2.589 -7.296 -2.367 1.00 0.00 C ATOM 240 O THR 69 2.478 -7.622 -3.549 1.00 0.00 O ATOM 241 N LEU 70 3.436 -6.357 -1.952 1.00 0.00 N ATOM 242 CA LEU 70 4.319 -5.629 -2.877 1.00 0.00 C ATOM 243 C LEU 70 5.195 -6.607 -3.672 1.00 0.00 C ATOM 244 O LEU 70 5.485 -7.697 -3.180 1.00 0.00 O ATOM 245 N GLU 71 5.633 -6.211 -4.864 1.00 0.00 N ATOM 246 CA GLU 71 6.497 -7.058 -5.717 1.00 0.00 C ATOM 247 C GLU 71 7.592 -6.200 -6.381 1.00 0.00 C ATOM 248 O GLU 71 7.329 -5.118 -6.906 1.00 0.00 O ATOM 249 N LEU 72 8.819 -6.711 -6.355 1.00 0.00 N ATOM 250 CA LEU 72 9.982 -5.984 -6.959 1.00 0.00 C ATOM 251 C LEU 72 10.885 -6.944 -7.804 1.00 0.00 C ATOM 252 O LEU 72 10.969 -8.127 -7.474 1.00 0.00 O ATOM 253 N LYS 73 11.535 -6.460 -8.827 1.00 0.00 N ATOM 254 CA LYS 73 12.411 -7.338 -9.695 1.00 0.00 C ATOM 255 C LYS 73 13.828 -7.450 -9.122 1.00 0.00 C ATOM 256 O LYS 73 14.692 -8.123 -9.686 1.00 0.00 O ATOM 257 N ALA 74 14.060 -6.751 -8.017 1.00 0.00 N ATOM 258 CA ALA 74 15.379 -6.736 -7.367 1.00 0.00 C ATOM 259 C ALA 74 15.608 -8.017 -6.549 1.00 0.00 C ATOM 260 O ALA 74 14.703 -8.837 -6.395 1.00 0.00 O ATOM 261 N GLU 75 16.831 -8.186 -6.059 1.00 0.00 N ATOM 262 CA GLU 75 17.217 -9.387 -5.258 1.00 0.00 C ATOM 263 C GLU 75 17.708 -8.998 -3.856 1.00 0.00 C ATOM 264 O GLU 75 18.605 -9.637 -3.306 1.00 0.00 O ATOM 265 N GLY 76 17.123 -7.943 -3.300 1.00 0.00 N ATOM 266 CA GLY 76 17.502 -7.449 -1.959 1.00 0.00 C ATOM 267 C GLY 76 17.050 -8.425 -0.871 1.00 0.00 C ATOM 268 O GLY 76 16.477 -9.476 -1.160 1.00 0.00 O ATOM 269 N VAL 77 17.292 -8.052 0.381 1.00 0.00 N ATOM 270 CA VAL 77 16.907 -8.874 1.559 1.00 0.00 C ATOM 271 C VAL 77 15.753 -8.195 2.329 1.00 0.00 C ATOM 272 O VAL 77 15.896 -7.078 2.825 1.00 0.00 O ATOM 273 N THR 78 14.626 -8.892 2.424 1.00 0.00 N ATOM 274 CA THR 78 13.444 -8.361 3.132 1.00 0.00 C ATOM 275 C THR 78 13.687 -8.341 4.651 1.00 0.00 C ATOM 276 O THR 78 13.614 -9.383 5.302 1.00 0.00 O ATOM 277 N VAL 79 13.990 -7.167 5.195 1.00 0.00 N ATOM 278 CA VAL 79 14.243 -7.017 6.635 1.00 0.00 C ATOM 279 C VAL 79 12.934 -7.175 7.419 1.00 0.00 C ATOM 280 O VAL 79 12.838 -8.030 8.300 1.00 0.00 O ATOM 281 N GLN 80 11.945 -6.346 7.103 1.00 0.00 N ATOM 282 CA GLN 80 10.637 -6.399 7.790 1.00 0.00 C ATOM 283 C GLN 80 9.517 -6.002 6.832 1.00 0.00 C ATOM 284 O GLN 80 9.756 -5.391 5.791 1.00 0.00 O ATOM 285 N PRO 81 8.287 -6.342 7.205 1.00 0.00 N ATOM 286 CA PRO 81 7.091 -6.030 6.378 1.00 0.00 C ATOM 287 C PRO 81 6.116 -5.110 7.168 1.00 0.00 C ATOM 288 O PRO 81 5.624 -5.548 8.208 1.00 0.00 O ATOM 289 N SER 82 5.820 -3.927 6.704 1.00 0.00 N ATOM 290 CA SER 82 4.852 -3.042 7.435 1.00 0.00 C ATOM 291 C SER 82 3.416 -3.321 6.995 1.00 0.00 C ATOM 292 O SER 82 3.162 -4.079 6.060 1.00 0.00 O ATOM 293 N THR 83 2.479 -2.667 7.672 1.00 0.00 N ATOM 294 CA THR 83 1.041 -2.814 7.371 1.00 0.00 C ATOM 295 C THR 83 0.373 -1.453 7.408 1.00 0.00 C ATOM 296 O THR 83 0.975 -0.445 7.779 1.00 0.00 O ATOM 297 N VAL 84 -0.899 -1.436 7.022 1.00 0.00 N ATOM 298 CA VAL 84 -1.687 -0.198 7.000 1.00 0.00 C ATOM 299 C VAL 84 -3.108 -0.486 7.471 1.00 0.00 C ATOM 300 O VAL 84 -3.635 -1.586 7.304 1.00 0.00 O ATOM 301 N LYS 85 -3.729 0.533 8.053 1.00 0.00 N ATOM 302 CA LYS 85 -5.096 0.427 8.565 1.00 0.00 C ATOM 303 C LYS 85 -5.883 1.670 8.147 1.00 0.00 C ATOM 304 O LYS 85 -5.366 2.788 8.133 1.00 0.00 O ATOM 305 N VAL 86 -7.161 1.461 7.843 1.00 0.00 N ATOM 306 CA VAL 86 -8.037 2.565 7.411 1.00 0.00 C ATOM 307 C VAL 86 -9.483 2.197 7.646 1.00 0.00 C ATOM 308 O VAL 86 -9.780 1.118 8.160 1.00 0.00 O ATOM 309 N ASN 87 -10.390 3.083 7.250 1.00 0.00 N ATOM 310 CA ASN 87 -11.848 2.868 7.409 1.00 0.00 C ATOM 311 C ASN 87 -12.532 2.856 6.037 1.00 0.00 C ATOM 312 O ASN 87 -12.205 3.678 5.181 1.00 0.00 O ATOM 313 N LEU 88 -13.487 1.953 5.845 1.00 0.00 N ATOM 314 CA LEU 88 -14.237 1.833 4.579 1.00 0.00 C ATOM 315 C LEU 88 -15.660 2.370 4.770 1.00 0.00 C ATOM 316 O LEU 88 -16.333 2.043 5.748 1.00 0.00 O ATOM 317 N LYS 89 -16.105 3.191 3.826 1.00 0.00 N ATOM 318 CA LYS 89 -17.457 3.804 3.865 1.00 0.00 C ATOM 319 C LYS 89 -18.266 3.348 2.635 1.00 0.00 C ATOM 320 O LYS 89 -17.754 3.292 1.517 1.00 0.00 O ATOM 321 N VAL 90 -19.539 3.046 2.865 1.00 0.00 N ATOM 322 CA VAL 90 -20.426 2.608 1.766 1.00 0.00 C ATOM 323 C VAL 90 -20.535 3.705 0.687 1.00 0.00 C ATOM 324 O VAL 90 -20.583 4.894 1.005 1.00 0.00 O ATOM 325 N THR 91 -20.558 3.293 -0.577 1.00 0.00 N ATOM 326 CA THR 91 -20.649 4.264 -1.692 1.00 0.00 C ATOM 327 C THR 91 -21.819 5.246 -1.466 1.00 0.00 C ATOM 328 O THR 91 -22.958 4.837 -1.248 1.00 0.00 O ATOM 329 N GLN 92 -21.511 6.537 -1.525 1.00 0.00 N ATOM 330 CA GLN 92 -22.517 7.591 -1.326 1.00 0.00 C ATOM 331 C GLN 92 -23.259 7.851 -2.640 1.00 0.00 C ATOM 332 O GLN 92 -23.430 8.997 -3.054 1.00 0.00 O ATOM 333 N LYS 93 -23.706 6.775 -3.280 1.00 0.00 N ATOM 334 CA LYS 93 -24.420 6.886 -4.557 1.00 0.00 C ATOM 335 C LYS 93 -25.738 7.684 -4.390 1.00 0.00 C ATOM 336 O LYS 93 -26.279 7.686 -3.284 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 336 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 71.85 50.0 166 97.6 170 ARMSMC SECONDARY STRUCTURE . . 59.38 56.3 103 97.2 106 ARMSMC SURFACE . . . . . . . . 75.23 45.5 112 96.6 116 ARMSMC BURIED . . . . . . . . 64.28 59.3 54 100.0 54 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 66 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.90 (Number of atoms: 84) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.90 84 97.7 86 CRMSCA CRN = ALL/NP . . . . . 0.0702 CRMSCA SECONDARY STRUCTURE . . 5.88 52 98.1 53 CRMSCA SURFACE . . . . . . . . 6.31 57 96.6 59 CRMSCA BURIED . . . . . . . . 4.92 27 100.0 27 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.82 336 78.9 426 CRMSMC SECONDARY STRUCTURE . . 5.82 208 78.8 264 CRMSMC SURFACE . . . . . . . . 6.23 228 78.1 292 CRMSMC BURIED . . . . . . . . 4.87 108 80.6 134 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 971 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 917 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 625 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 651 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 320 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.82 336 25.6 1315 CRMSALL SECONDARY STRUCTURE . . 5.82 208 24.9 837 CRMSALL SURFACE . . . . . . . . 6.23 228 25.7 887 CRMSALL BURIED . . . . . . . . 4.87 108 25.2 428 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.169 1.000 0.500 84 97.7 86 ERRCA SECONDARY STRUCTURE . . 5.054 1.000 0.500 52 98.1 53 ERRCA SURFACE . . . . . . . . 5.539 1.000 0.500 57 96.6 59 ERRCA BURIED . . . . . . . . 4.389 1.000 0.500 27 100.0 27 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.111 1.000 0.500 336 78.9 426 ERRMC SECONDARY STRUCTURE . . 4.980 1.000 0.500 208 78.8 264 ERRMC SURFACE . . . . . . . . 5.458 1.000 0.500 228 78.1 292 ERRMC BURIED . . . . . . . . 4.378 1.000 0.500 108 80.6 134 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 971 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 917 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 625 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 651 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 320 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.111 1.000 0.500 336 25.6 1315 ERRALL SECONDARY STRUCTURE . . 4.980 1.000 0.500 208 24.9 837 ERRALL SURFACE . . . . . . . . 5.458 1.000 0.500 228 25.7 887 ERRALL BURIED . . . . . . . . 4.378 1.000 0.500 108 25.2 428 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 8 21 44 81 84 86 DISTCA CA (P) 0.00 9.30 24.42 51.16 94.19 86 DISTCA CA (RMS) 0.00 1.66 2.17 3.38 5.30 DISTCA ALL (N) 1 31 82 180 323 336 1315 DISTALL ALL (P) 0.08 2.36 6.24 13.69 24.56 1315 DISTALL ALL (RMS) 0.78 1.65 2.20 3.41 5.20 DISTALL END of the results output