####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 138), selected 20 , name T0571TS316_1_2-D1 # Molecule2: number of CA atoms 165 ( 1292), selected 20 , name T0571-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0571TS316_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 177 - 193 4.88 8.72 LCS_AVERAGE: 10.03 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 184 - 192 1.92 8.34 LCS_AVERAGE: 4.70 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 186 - 191 0.99 8.77 LONGEST_CONTINUOUS_SEGMENT: 6 187 - 192 0.88 10.37 LONGEST_CONTINUOUS_SEGMENT: 6 191 - 196 1.00 20.94 LCS_AVERAGE: 3.15 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 177 N 177 3 3 17 3 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT A 178 A 178 4 6 17 4 5 6 8 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT G 179 G 179 4 6 17 4 5 5 5 6 8 9 11 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT D 180 D 180 4 6 17 4 5 5 5 6 8 9 11 11 12 14 15 16 16 16 16 16 17 17 18 LCS_GDT W 181 W 181 4 7 17 4 5 5 5 6 8 9 11 11 12 14 15 16 16 16 16 16 17 17 18 LCS_GDT S 182 S 182 4 7 17 4 4 4 5 5 8 9 11 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT I 183 I 183 5 7 17 4 4 5 6 6 9 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT L 184 L 184 5 9 17 4 5 5 6 7 9 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT P 185 P 185 5 9 17 4 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT Q 186 Q 186 6 9 17 4 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT N 187 N 187 6 9 17 3 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT F 188 F 188 6 9 17 3 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT V 189 V 189 6 9 17 4 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT L 190 L 190 6 9 17 4 5 6 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT Y 191 Y 191 6 9 17 4 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 LCS_GDT A 192 A 192 6 9 17 4 5 6 9 9 10 11 12 12 12 14 15 16 16 16 16 16 17 17 18 LCS_GDT V 193 V 193 6 8 17 3 5 6 6 7 8 9 10 11 11 12 13 13 14 14 15 16 17 17 18 LCS_GDT K 194 K 194 6 8 14 3 5 6 6 7 8 9 10 11 11 12 13 13 14 14 15 15 17 17 18 LCS_GDT Y 195 Y 195 6 8 14 3 5 6 6 7 8 9 10 11 11 11 11 12 12 13 13 15 16 16 16 LCS_GDT V 196 V 196 6 8 14 0 3 6 6 7 8 9 10 11 11 11 11 12 12 13 13 13 16 16 16 LCS_AVERAGE LCS_A: 5.96 ( 3.15 4.70 10.03 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 9 9 10 11 12 12 13 14 15 16 16 16 16 16 17 17 18 GDT PERCENT_AT 2.42 3.03 4.24 5.45 5.45 6.06 6.67 7.27 7.27 7.88 8.48 9.09 9.70 9.70 9.70 9.70 9.70 10.30 10.30 10.91 GDT RMS_LOCAL 0.12 0.45 1.03 1.35 1.35 1.61 1.94 2.26 2.26 3.09 3.29 3.66 4.04 4.04 4.04 4.04 4.04 4.88 4.88 5.57 GDT RMS_ALL_AT 13.88 22.87 8.29 8.27 8.27 8.36 8.44 8.56 8.56 9.56 9.08 9.30 9.65 9.65 9.65 9.65 9.65 8.72 8.72 7.91 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 177 N 177 1.060 3 0.396 0.373 3.493 67.500 45.060 LGA A 178 A 178 1.616 0 0.623 0.606 5.238 58.214 64.667 LGA G 179 G 179 7.749 0 0.038 0.038 11.914 8.452 8.452 LGA D 180 D 180 11.606 3 0.075 0.078 13.126 0.357 0.179 LGA W 181 W 181 9.306 9 0.603 0.566 9.526 2.143 0.646 LGA S 182 S 182 8.130 1 0.121 0.121 9.378 15.119 10.317 LGA I 183 I 183 4.144 3 0.564 0.527 5.750 41.429 23.393 LGA L 184 L 184 3.298 3 0.041 0.046 4.058 55.714 32.500 LGA P 185 P 185 1.496 2 0.037 0.078 2.221 72.976 50.952 LGA Q 186 Q 186 1.580 4 0.290 0.283 2.398 79.286 42.434 LGA N 187 N 187 1.020 3 0.129 0.131 1.384 88.333 54.345 LGA F 188 F 188 1.228 6 0.263 0.320 2.192 88.214 37.965 LGA V 189 V 189 1.315 2 0.104 0.138 1.569 81.429 56.939 LGA L 190 L 190 2.651 3 0.066 0.092 4.064 64.881 37.083 LGA Y 191 Y 191 1.891 7 0.585 0.533 3.759 70.833 27.222 LGA A 192 A 192 3.175 0 0.087 0.128 7.286 34.643 40.667 LGA V 193 V 193 9.848 2 0.041 0.053 11.970 2.738 1.565 LGA K 194 K 194 12.310 4 0.156 0.206 16.351 0.000 0.000 LGA Y 195 Y 195 18.768 7 0.266 0.343 20.569 0.000 0.000 LGA V 196 V 196 21.386 2 0.686 0.625 24.570 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 163 99 60.74 165 SUMMARY(RMSD_GDC): 7.130 7.202 7.283 5.044 3.239 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 165 4.0 12 2.26 6.364 6.156 0.508 LGA_LOCAL RMSD: 2.263 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.565 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 7.130 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.744243 * X + -0.544196 * Y + -0.387237 * Z + 64.445282 Y_new = 0.656592 * X + -0.702390 * Y + -0.274837 * Z + 23.962477 Z_new = -0.122427 * X + -0.458802 * Y + 0.880064 * Z + -5.616379 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.418684 0.122734 -0.480565 [DEG: 138.5804 7.0322 -27.5343 ] ZXZ: -0.953565 0.494800 -2.880829 [DEG: -54.6353 28.3500 -165.0593 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0571TS316_1_2-D1 REMARK 2: T0571-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0571TS316_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 165 4.0 12 2.26 6.156 7.13 REMARK ---------------------------------------------------------- MOLECULE T0571TS316_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0571 REMARK PARENT N/A ATOM 1 N ASN 177 64.445 23.962 -5.616 1.00 0.00 N ATOM 2 CA ASN 177 63.360 24.920 -5.795 1.00 0.00 C ATOM 3 C ASN 177 62.177 24.284 -6.514 1.00 0.00 C ATOM 4 O ASN 177 61.322 24.981 -7.059 1.00 0.00 O ATOM 5 CB ASN 177 63.827 26.155 -6.543 1.00 0.00 C ATOM 6 CEN ASN 177 64.207 27.107 -6.321 1.00 0.00 C ATOM 7 H ASN 177 65.343 24.144 -6.017 1.00 0.00 H ATOM 8 N ALA 178 62.134 22.957 -6.512 1.00 0.00 N ATOM 9 CA ALA 178 61.037 22.224 -7.132 1.00 0.00 C ATOM 10 C ALA 178 59.708 22.548 -6.459 1.00 0.00 C ATOM 11 O ALA 178 59.620 22.597 -5.232 1.00 0.00 O ATOM 12 CB ALA 178 61.306 20.727 -7.087 1.00 0.00 C ATOM 13 CEN ALA 178 61.306 20.728 -7.086 1.00 0.00 C ATOM 14 H ALA 178 62.881 22.440 -6.070 1.00 0.00 H ATOM 15 N GLY 179 58.680 22.769 -7.269 1.00 0.00 N ATOM 16 CA GLY 179 57.385 23.208 -6.761 1.00 0.00 C ATOM 17 C GLY 179 56.687 22.092 -5.995 1.00 0.00 C ATOM 18 O GLY 179 55.776 22.342 -5.207 1.00 0.00 O ATOM 19 CEN GLY 179 57.385 23.209 -6.761 1.00 0.00 C ATOM 20 H GLY 179 58.797 22.630 -8.262 1.00 0.00 H ATOM 21 N ASP 180 57.120 20.858 -6.233 1.00 0.00 N ATOM 22 CA ASP 180 56.605 19.710 -5.494 1.00 0.00 C ATOM 23 C ASP 180 57.183 19.659 -4.086 1.00 0.00 C ATOM 24 O ASP 180 56.720 18.890 -3.243 1.00 0.00 O ATOM 25 CB ASP 180 56.918 18.410 -6.239 1.00 0.00 C ATOM 26 CEN ASP 180 56.481 17.745 -6.873 1.00 0.00 C ATOM 27 H ASP 180 57.822 20.711 -6.944 1.00 0.00 H ATOM 28 N TRP 181 58.195 20.482 -3.836 1.00 0.00 N ATOM 29 CA TRP 181 58.802 20.572 -2.513 1.00 0.00 C ATOM 30 C TRP 181 59.524 19.281 -2.150 1.00 0.00 C ATOM 31 O TRP 181 59.943 19.093 -1.007 1.00 0.00 O ATOM 32 CB TRP 181 57.739 20.892 -1.460 1.00 0.00 C ATOM 33 CEN TRP 181 57.275 22.110 -0.287 1.00 0.00 C ATOM 34 H TRP 181 58.553 21.062 -4.582 1.00 0.00 H ATOM 35 N SER 182 59.667 18.394 -3.129 1.00 0.00 N ATOM 36 CA SER 182 60.185 17.054 -2.879 1.00 0.00 C ATOM 37 C SER 182 61.687 17.082 -2.626 1.00 0.00 C ATOM 38 O SER 182 62.259 16.118 -2.118 1.00 0.00 O ATOM 39 CB SER 182 59.863 16.143 -4.047 1.00 0.00 C ATOM 40 CEN SER 182 59.779 15.987 -4.561 1.00 0.00 C ATOM 41 H SER 182 59.411 18.654 -4.070 1.00 0.00 H ATOM 42 N ILE 183 62.321 18.194 -2.984 1.00 0.00 N ATOM 43 CA ILE 183 63.758 18.350 -2.794 1.00 0.00 C ATOM 44 C ILE 183 64.069 19.547 -1.903 1.00 0.00 C ATOM 45 O ILE 183 65.222 19.961 -1.785 1.00 0.00 O ATOM 46 CB ILE 183 64.491 18.519 -4.137 1.00 0.00 C ATOM 47 CEN ILE 183 64.947 17.994 -4.978 1.00 0.00 C ATOM 48 H ILE 183 61.794 18.949 -3.398 1.00 0.00 H ATOM 49 N LEU 184 63.034 20.097 -1.278 1.00 0.00 N ATOM 50 CA LEU 184 63.201 21.221 -0.364 1.00 0.00 C ATOM 51 C LEU 184 63.599 20.746 1.027 1.00 0.00 C ATOM 52 O LEU 184 63.044 19.776 1.546 1.00 0.00 O ATOM 53 CB LEU 184 61.909 22.044 -0.297 1.00 0.00 C ATOM 54 CEN LEU 184 61.501 23.402 -0.901 1.00 0.00 C ATOM 55 H LEU 184 62.108 19.727 -1.439 1.00 0.00 H ATOM 56 N PRO 185 64.565 21.433 1.628 1.00 0.00 N ATOM 57 CA PRO 185 65.023 21.098 2.971 1.00 0.00 C ATOM 58 C PRO 185 63.876 21.150 3.972 1.00 0.00 C ATOM 59 O PRO 185 62.948 21.946 3.826 1.00 0.00 O ATOM 60 CB PRO 185 66.104 22.149 3.272 1.00 0.00 C ATOM 61 CEN PRO 185 65.661 22.787 1.666 1.00 0.00 C ATOM 62 N GLN 186 63.946 20.298 4.989 1.00 0.00 N ATOM 63 CA GLN 186 62.921 20.256 6.025 1.00 0.00 C ATOM 64 C GLN 186 62.929 21.530 6.860 1.00 0.00 C ATOM 65 O GLN 186 61.893 21.955 7.372 1.00 0.00 O ATOM 66 CB GLN 186 63.128 19.042 6.934 1.00 0.00 C ATOM 67 CEN GLN 186 62.588 17.417 7.277 1.00 0.00 C ATOM 68 H GLN 186 64.730 19.663 5.046 1.00 0.00 H ATOM 69 N ASN 187 64.104 22.137 6.993 1.00 0.00 N ATOM 70 CA ASN 187 64.243 23.381 7.739 1.00 0.00 C ATOM 71 C ASN 187 63.445 24.505 7.091 1.00 0.00 C ATOM 72 O ASN 187 63.122 25.503 7.735 1.00 0.00 O ATOM 73 CB ASN 187 65.699 23.785 7.879 1.00 0.00 C ATOM 74 CEN ASN 187 66.484 23.656 8.564 1.00 0.00 C ATOM 75 H ASN 187 64.922 21.725 6.566 1.00 0.00 H ATOM 76 N PHE 188 63.128 24.337 5.811 1.00 0.00 N ATOM 77 CA PHE 188 62.333 25.318 5.082 1.00 0.00 C ATOM 78 C PHE 188 60.847 25.147 5.372 1.00 0.00 C ATOM 79 O PHE 188 60.182 24.305 4.768 1.00 0.00 O ATOM 80 CB PHE 188 62.593 25.208 3.580 1.00 0.00 C ATOM 81 CEN PHE 188 63.472 25.928 2.469 1.00 0.00 C ATOM 82 H PHE 188 63.447 23.507 5.331 1.00 0.00 H ATOM 83 N VAL 189 60.332 25.949 6.297 1.00 0.00 N ATOM 84 CA VAL 189 58.929 25.872 6.682 1.00 0.00 C ATOM 85 C VAL 189 58.074 26.812 5.839 1.00 0.00 C ATOM 86 O VAL 189 58.273 28.026 5.852 1.00 0.00 O ATOM 87 CB VAL 189 58.732 26.214 8.172 1.00 0.00 C ATOM 88 CEN VAL 189 58.575 25.944 8.786 1.00 0.00 C ATOM 89 H VAL 189 60.930 26.630 6.745 1.00 0.00 H ATOM 90 N LEU 190 57.122 26.241 5.108 1.00 0.00 N ATOM 91 CA LEU 190 56.250 27.024 4.241 1.00 0.00 C ATOM 92 C LEU 190 55.338 27.933 5.054 1.00 0.00 C ATOM 93 O LEU 190 54.774 27.518 6.067 1.00 0.00 O ATOM 94 CB LEU 190 55.421 26.095 3.347 1.00 0.00 C ATOM 95 CEN LEU 190 55.520 25.712 1.858 1.00 0.00 C ATOM 96 H LEU 190 57.001 25.240 5.155 1.00 0.00 H ATOM 97 N TYR 191 55.195 29.175 4.604 1.00 0.00 N ATOM 98 CA TYR 191 54.400 30.163 5.323 1.00 0.00 C ATOM 99 C TYR 191 53.155 30.549 4.534 1.00 0.00 C ATOM 100 O TYR 191 52.124 30.891 5.113 1.00 0.00 O ATOM 101 CB TYR 191 55.238 31.408 5.623 1.00 0.00 C ATOM 102 CEN TYR 191 56.139 32.145 6.932 1.00 0.00 C ATOM 103 H TYR 191 55.647 29.440 3.741 1.00 0.00 H ATOM 104 N ALA 192 53.257 30.491 3.211 1.00 0.00 N ATOM 105 CA ALA 192 52.137 30.827 2.340 1.00 0.00 C ATOM 106 C ALA 192 52.461 30.523 0.883 1.00 0.00 C ATOM 107 O ALA 192 53.627 30.481 0.493 1.00 0.00 O ATOM 108 CB ALA 192 51.757 32.291 2.507 1.00 0.00 C ATOM 109 CEN ALA 192 51.756 32.290 2.507 1.00 0.00 C ATOM 110 H ALA 192 54.134 30.207 2.797 1.00 0.00 H ATOM 111 N VAL 193 51.421 30.310 0.083 1.00 0.00 N ATOM 112 CA VAL 193 51.590 30.070 -1.344 1.00 0.00 C ATOM 113 C VAL 193 50.472 30.720 -2.148 1.00 0.00 C ATOM 114 O VAL 193 49.292 30.537 -1.849 1.00 0.00 O ATOM 115 CB VAL 193 51.630 28.563 -1.663 1.00 0.00 C ATOM 116 CEN VAL 193 52.043 28.050 -1.862 1.00 0.00 C ATOM 117 H VAL 193 50.490 30.315 0.475 1.00 0.00 H ATOM 118 N LYS 194 50.850 31.479 -3.171 1.00 0.00 N ATOM 119 CA LYS 194 49.882 32.201 -3.987 1.00 0.00 C ATOM 120 C LYS 194 50.253 32.143 -5.463 1.00 0.00 C ATOM 121 O LYS 194 51.422 32.271 -5.825 1.00 0.00 O ATOM 122 CB LYS 194 49.775 33.657 -3.530 1.00 0.00 C ATOM 123 CEN LYS 194 48.696 35.154 -2.496 1.00 0.00 C ATOM 124 H LYS 194 51.833 31.558 -3.389 1.00 0.00 H ATOM 125 N TYR 195 49.250 31.948 -6.313 1.00 0.00 N ATOM 126 CA TYR 195 49.417 32.134 -7.750 1.00 0.00 C ATOM 127 C TYR 195 49.069 33.557 -8.167 1.00 0.00 C ATOM 128 O TYR 195 47.904 33.878 -8.404 1.00 0.00 O ATOM 129 CB TYR 195 48.551 31.135 -8.522 1.00 0.00 C ATOM 130 CEN TYR 195 48.686 29.607 -9.369 1.00 0.00 C ATOM 131 H TYR 195 48.350 31.665 -5.955 1.00 0.00 H ATOM 132 N VAL 196 50.086 34.408 -8.252 1.00 0.00 N ATOM 133 CA VAL 196 49.899 35.783 -8.701 1.00 0.00 C ATOM 134 C VAL 196 49.372 35.828 -10.129 1.00 0.00 C ATOM 135 O VAL 196 48.813 36.837 -10.563 1.00 0.00 O ATOM 136 CB VAL 196 51.209 36.587 -8.621 1.00 0.00 C ATOM 137 CEN VAL 196 51.531 37.091 -8.278 1.00 0.00 C ATOM 138 H VAL 196 51.012 34.095 -8.000 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 99 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 65.02 55.3 38 11.6 328 ARMSMC SECONDARY STRUCTURE . . 70.14 50.0 22 17.7 124 ARMSMC SURFACE . . . . . . . . 62.50 55.6 18 8.9 202 ARMSMC BURIED . . . . . . . . 67.21 55.0 20 15.9 126 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 143 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 126 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 54 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 86 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 106 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 78 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 38 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 63 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.13 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.13 20 12.1 165 CRMSCA CRN = ALL/NP . . . . . 0.3565 CRMSCA SECONDARY STRUCTURE . . 6.98 11 17.7 62 CRMSCA SURFACE . . . . . . . . 7.97 10 9.8 102 CRMSCA BURIED . . . . . . . . 6.18 10 15.9 63 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.29 99 12.1 815 CRMSMC SECONDARY STRUCTURE . . 7.04 55 17.9 307 CRMSMC SURFACE . . . . . . . . 8.25 49 9.8 501 CRMSMC BURIED . . . . . . . . 6.20 50 15.9 314 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.62 19 3.0 632 CRMSSC RELIABLE SIDE CHAINS . 7.62 19 3.6 522 CRMSSC SECONDARY STRUCTURE . . 7.86 11 4.3 258 CRMSSC SURFACE . . . . . . . . 8.60 9 2.4 370 CRMSSC BURIED . . . . . . . . 6.60 10 3.8 262 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.29 99 7.7 1292 CRMSALL SECONDARY STRUCTURE . . 7.04 55 10.9 506 CRMSALL SURFACE . . . . . . . . 8.25 49 6.3 778 CRMSALL BURIED . . . . . . . . 6.20 50 9.7 514 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.332 1.000 0.500 20 12.1 165 ERRCA SECONDARY STRUCTURE . . 6.496 1.000 0.500 11 17.7 62 ERRCA SURFACE . . . . . . . . 7.207 1.000 0.500 10 9.8 102 ERRCA BURIED . . . . . . . . 5.457 1.000 0.500 10 15.9 63 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.416 1.000 0.500 99 12.1 815 ERRMC SECONDARY STRUCTURE . . 6.535 1.000 0.500 55 17.9 307 ERRMC SURFACE . . . . . . . . 7.361 1.000 0.500 49 9.8 501 ERRMC BURIED . . . . . . . . 5.490 1.000 0.500 50 15.9 314 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.686 1.000 0.500 19 3.0 632 ERRSC RELIABLE SIDE CHAINS . 6.686 1.000 0.500 19 3.6 522 ERRSC SECONDARY STRUCTURE . . 7.195 1.000 0.500 11 4.3 258 ERRSC SURFACE . . . . . . . . 7.618 1.000 0.500 9 2.4 370 ERRSC BURIED . . . . . . . . 5.847 1.000 0.500 10 3.8 262 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.416 1.000 0.500 99 7.7 1292 ERRALL SECONDARY STRUCTURE . . 6.535 1.000 0.500 55 10.9 506 ERRALL SURFACE . . . . . . . . 7.361 1.000 0.500 49 6.3 778 ERRALL BURIED . . . . . . . . 5.490 1.000 0.500 50 9.7 514 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 8 16 20 165 DISTCA CA (P) 0.00 0.00 1.82 4.85 9.70 165 DISTCA CA (RMS) 0.00 0.00 2.44 3.45 5.39 DISTCA ALL (N) 0 3 19 39 80 99 1292 DISTALL ALL (P) 0.00 0.23 1.47 3.02 6.19 1292 DISTALL ALL (RMS) 0.00 1.49 2.43 3.37 5.52 DISTALL END of the results output