####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 289), selected 35 , name T0571TS218_1_1-D2 # Molecule2: number of CA atoms 135 ( 1036), selected 35 , name T0571-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0571TS218_1_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 198 - 217 4.91 15.73 LONGEST_CONTINUOUS_SEGMENT: 20 199 - 218 4.94 15.65 LCS_AVERAGE: 13.63 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 200 - 213 1.80 16.17 LCS_AVERAGE: 6.84 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 200 - 205 1.00 15.98 LONGEST_CONTINUOUS_SEGMENT: 6 201 - 206 0.82 15.45 LCS_AVERAGE: 3.24 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 197 N 197 5 5 19 4 4 5 5 5 5 5 5 6 6 6 6 7 7 7 7 9 10 15 18 LCS_GDT P 198 P 198 5 5 20 4 4 5 5 5 5 5 5 6 6 7 10 11 12 18 18 19 21 22 29 LCS_GDT W 199 W 199 5 10 20 4 4 5 8 11 12 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT H 200 H 200 6 14 20 4 4 7 12 13 15 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT G 201 G 201 6 14 20 3 5 7 12 13 15 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT E 202 E 202 6 14 20 4 5 7 12 13 15 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT Y 203 Y 203 6 14 20 4 5 7 12 13 15 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT L 204 L 204 6 14 20 4 5 7 12 13 15 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT R 205 R 205 6 14 20 4 5 7 12 13 15 15 15 16 16 16 16 17 19 20 20 22 26 27 29 LCS_GDT R 206 R 206 6 14 20 3 5 7 12 13 15 15 15 16 16 16 16 17 19 20 21 22 26 27 29 LCS_GDT G 207 G 207 5 14 20 3 5 6 12 13 15 15 15 16 16 16 16 17 19 20 21 22 22 24 25 LCS_GDT I 208 I 208 5 14 20 3 5 7 9 13 15 15 15 16 16 16 16 18 19 20 21 22 26 27 29 LCS_GDT D 209 D 209 5 14 20 3 5 5 6 8 15 15 15 16 16 16 17 19 20 20 21 22 26 27 29 LCS_GDT H 210 H 210 5 14 20 3 5 7 12 13 15 15 15 16 16 16 18 19 20 20 21 22 26 27 29 LCS_GDT A 211 A 211 4 14 20 3 4 7 12 13 15 15 15 16 16 16 18 19 20 20 21 22 26 27 29 LCS_GDT T 212 T 212 4 14 20 3 4 7 12 13 15 15 15 16 16 16 18 19 20 20 21 22 26 27 29 LCS_GDT V 213 V 213 4 14 20 3 4 6 12 13 15 15 15 16 16 16 18 19 20 20 21 22 26 27 29 LCS_GDT A 214 A 214 3 8 20 3 3 5 7 8 15 15 15 16 16 16 18 19 20 20 21 22 26 26 29 LCS_GDT G 215 G 215 3 8 20 3 3 5 7 8 9 9 10 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT T 216 T 216 4 8 20 3 4 5 7 8 9 9 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT S 217 S 217 4 8 20 3 4 5 7 8 9 9 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT K 218 K 218 4 8 20 3 4 5 7 8 9 9 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT D 219 D 219 4 8 19 3 4 5 7 8 9 9 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT I 220 I 220 4 8 19 3 4 5 7 8 9 9 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT I 221 I 221 4 8 19 3 4 5 7 8 9 9 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT R 222 R 222 3 5 19 3 3 3 4 5 6 8 11 12 14 16 18 19 20 20 21 22 26 27 29 LCS_GDT H 223 H 223 3 5 19 3 3 5 5 6 8 9 10 11 13 15 18 19 20 20 21 22 26 27 29 LCS_GDT E 224 E 224 3 5 19 2 3 5 5 6 8 9 10 11 13 14 17 18 19 19 21 22 26 27 29 LCS_GDT Q 225 Q 225 4 4 19 3 3 4 4 4 6 9 9 11 13 14 17 19 20 20 21 22 26 27 29 LCS_GDT F 226 F 226 4 4 19 3 3 4 4 6 8 9 10 11 11 14 18 19 20 20 21 22 24 27 29 LCS_GDT V 227 V 227 4 4 13 3 3 4 4 6 8 9 10 11 12 16 18 19 20 20 21 22 24 27 29 LCS_GDT E 228 E 228 4 4 13 0 3 4 4 4 6 8 11 12 13 16 18 19 20 20 21 22 24 25 28 LCS_GDT N 229 N 229 3 4 13 3 3 3 5 7 9 9 11 12 13 16 18 19 20 20 21 22 22 22 24 LCS_GDT D 230 D 230 3 4 7 3 3 3 3 4 4 5 5 9 10 10 12 13 15 16 18 20 21 21 22 LCS_GDT E 231 E 231 3 4 7 3 3 3 3 4 4 5 5 6 6 6 7 7 7 7 7 8 16 18 18 LCS_AVERAGE LCS_A: 7.90 ( 3.24 6.84 13.63 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 12 13 15 15 15 16 16 16 18 19 20 20 21 22 26 27 29 GDT PERCENT_AT 2.96 3.70 5.19 8.89 9.63 11.11 11.11 11.11 11.85 11.85 11.85 13.33 14.07 14.81 14.81 15.56 16.30 19.26 20.00 21.48 GDT RMS_LOCAL 0.13 0.57 0.98 1.56 1.67 2.10 2.10 2.10 2.57 2.57 2.57 4.60 4.74 4.97 4.97 5.26 5.50 7.08 7.05 7.37 GDT RMS_ALL_AT 16.48 16.16 15.48 16.27 16.21 16.25 16.25 16.25 15.99 15.99 15.99 18.65 18.59 18.78 18.78 18.67 18.90 10.52 9.79 9.89 # Checking swapping # possible swapping detected: Y 203 Y 203 # possible swapping detected: D 209 D 209 # possible swapping detected: E 228 E 228 # possible swapping detected: D 230 D 230 # possible swapping detected: E 231 E 231 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 197 N 197 11.279 0 0.121 0.317 11.279 1.190 3.452 LGA P 198 P 198 11.841 0 0.113 0.096 15.679 0.000 0.000 LGA W 199 W 199 7.467 0 0.033 0.313 15.424 18.095 5.680 LGA H 200 H 200 1.699 0 0.092 1.129 8.759 56.190 32.905 LGA G 201 G 201 1.635 0 0.669 0.669 3.655 67.619 67.619 LGA E 202 E 202 1.422 0 0.105 0.420 6.379 79.524 54.815 LGA Y 203 Y 203 1.342 0 0.049 1.360 11.008 85.952 45.794 LGA L 204 L 204 1.903 0 0.039 1.375 6.444 68.929 52.321 LGA R 205 R 205 1.717 0 0.116 1.420 5.925 81.548 60.433 LGA R 206 R 206 2.207 0 0.069 1.134 8.666 63.452 33.290 LGA G 207 G 207 1.642 0 0.201 0.201 2.809 75.476 75.476 LGA I 208 I 208 2.636 0 0.025 0.128 9.965 69.286 41.905 LGA D 209 D 209 2.782 0 0.645 1.225 7.616 59.524 38.214 LGA H 210 H 210 0.952 0 0.268 1.160 6.364 75.952 54.524 LGA A 211 A 211 2.065 0 0.098 0.094 2.730 75.119 71.524 LGA T 212 T 212 1.793 0 0.303 1.025 3.497 65.119 65.170 LGA V 213 V 213 1.356 0 0.609 0.613 6.099 77.619 56.599 LGA A 214 A 214 4.233 0 0.265 0.257 8.566 29.524 27.048 LGA G 215 G 215 9.285 0 0.679 0.679 9.358 4.405 4.405 LGA T 216 T 216 10.056 0 0.300 1.169 13.831 0.952 0.544 LGA S 217 S 217 10.499 0 0.032 0.697 13.059 0.000 0.000 LGA K 218 K 218 13.154 0 0.287 0.887 15.446 0.000 0.000 LGA D 219 D 219 13.648 0 0.549 0.571 16.932 0.000 0.000 LGA I 220 I 220 15.146 0 0.276 0.304 15.895 0.000 0.000 LGA I 221 I 221 18.121 0 0.479 1.300 22.064 0.000 0.000 LGA R 222 R 222 18.030 0 0.616 1.048 18.949 0.000 0.000 LGA H 223 H 223 19.599 0 0.559 0.596 23.803 0.000 0.000 LGA E 224 E 224 24.429 0 0.465 0.888 26.244 0.000 0.000 LGA Q 225 Q 225 26.739 0 0.662 1.100 27.908 0.000 0.000 LGA F 226 F 226 29.410 0 0.108 1.203 36.940 0.000 0.000 LGA V 227 V 227 26.533 0 0.643 0.635 28.025 0.000 0.000 LGA E 228 E 228 30.398 0 0.734 0.987 34.176 0.000 0.000 LGA N 229 N 229 32.388 0 0.750 0.681 35.169 0.000 0.000 LGA D 230 D 230 31.515 0 0.109 1.005 31.783 0.000 0.000 LGA E 231 E 231 32.863 0 0.639 1.177 34.136 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 289 289 100.00 135 SUMMARY(RMSD_GDC): 9.347 9.261 10.256 7.818 5.865 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 135 4.0 15 2.10 9.815 9.464 0.681 LGA_LOCAL RMSD: 2.103 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.248 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 9.347 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.495576 * X + -0.507181 * Y + -0.705105 * Z + 56.868717 Y_new = -0.781878 * X + 0.093030 * Y + -0.616451 * Z + 58.020397 Z_new = 0.378248 * X + 0.856804 * Y + -0.350450 * Z + 40.493843 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.005874 -0.387903 1.959054 [DEG: -57.6324 -22.2252 112.2456 ] ZXZ: -0.852380 1.928848 0.415732 [DEG: -48.8378 110.5149 23.8197 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0571TS218_1_1-D2 REMARK 2: T0571-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0571TS218_1_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 135 4.0 15 2.10 9.464 9.35 REMARK ---------------------------------------------------------- MOLECULE T0571TS218_1_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0571 REMARK PARENT N/A ATOM 1277 N ASN 197 26.320 36.624 5.650 1.00 0.00 N ATOM 1278 CA ASN 197 26.271 36.975 4.235 1.00 0.00 C ATOM 1279 C ASN 197 27.672 36.518 3.724 1.00 0.00 C ATOM 1280 O ASN 197 28.584 36.574 4.541 1.00 0.00 O ATOM 1281 CB ASN 197 26.050 38.480 4.064 1.00 0.00 C ATOM 1282 CG ASN 197 27.213 39.302 4.584 1.00 0.00 C ATOM 1283 OD1 ASN 197 28.217 38.756 5.040 1.00 0.00 O ATOM 1284 ND2 ASN 197 27.079 40.622 4.519 1.00 0.00 N ATOM 1285 N PRO 198 27.875 36.050 2.459 1.00 0.00 N ATOM 1286 CA PRO 198 29.043 35.401 1.806 1.00 0.00 C ATOM 1287 C PRO 198 30.420 35.225 2.338 1.00 0.00 C ATOM 1288 O PRO 198 30.987 34.220 1.919 1.00 0.00 O ATOM 1289 CB PRO 198 29.260 36.224 0.535 1.00 0.00 C ATOM 1290 CG PRO 198 27.921 36.813 0.238 1.00 0.00 C ATOM 1291 CD PRO 198 27.300 37.127 1.570 1.00 0.00 C ATOM 1292 N TRP 199 31.019 36.154 3.113 1.00 0.00 N ATOM 1293 CA TRP 199 32.311 35.875 3.680 1.00 0.00 C ATOM 1294 C TRP 199 32.121 35.092 4.962 1.00 0.00 C ATOM 1295 O TRP 199 33.076 34.530 5.486 1.00 0.00 O ATOM 1296 CB TRP 199 33.054 37.176 3.987 1.00 0.00 C ATOM 1297 CG TRP 199 33.561 37.880 2.766 1.00 0.00 C ATOM 1298 CD1 TRP 199 34.782 37.722 2.176 1.00 0.00 C ATOM 1299 CD2 TRP 199 32.859 38.855 1.984 1.00 0.00 C ATOM 1300 NE1 TRP 199 34.884 38.538 1.075 1.00 0.00 N ATOM 1301 CE2 TRP 199 33.717 39.243 0.936 1.00 0.00 C ATOM 1302 CE3 TRP 199 31.590 39.436 2.067 1.00 0.00 C ATOM 1303 CZ2 TRP 199 33.345 40.187 -0.022 1.00 0.00 C ATOM 1304 CZ3 TRP 199 31.227 40.371 1.116 1.00 0.00 C ATOM 1305 CH2 TRP 199 32.098 40.739 0.085 1.00 0.00 H ATOM 1306 N HIS 200 30.872 34.997 5.469 1.00 0.00 N ATOM 1307 CA HIS 200 30.499 34.092 6.536 1.00 0.00 C ATOM 1308 C HIS 200 30.147 32.818 5.820 1.00 0.00 C ATOM 1309 O HIS 200 29.680 32.874 4.684 1.00 0.00 O ATOM 1310 CB HIS 200 29.308 34.649 7.320 1.00 0.00 C ATOM 1311 CG HIS 200 28.968 33.859 8.544 1.00 0.00 C ATOM 1312 ND1 HIS 200 28.131 32.765 8.515 1.00 0.00 N ATOM 1313 CD2 HIS 200 29.319 33.927 9.955 1.00 0.00 C ATOM 1314 CE1 HIS 200 28.016 32.267 9.758 1.00 0.00 C ATOM 1315 NE2 HIS 200 28.728 32.959 10.628 1.00 0.00 N ATOM 1316 N GLY 201 30.370 31.643 6.445 1.00 0.00 N ATOM 1317 CA GLY 201 30.380 30.394 5.744 1.00 0.00 C ATOM 1318 C GLY 201 29.083 29.923 5.128 1.00 0.00 C ATOM 1319 O GLY 201 29.156 29.081 4.234 1.00 0.00 O ATOM 1320 N GLU 202 27.880 30.395 5.552 1.00 0.00 N ATOM 1321 CA GLU 202 26.666 29.970 4.885 1.00 0.00 C ATOM 1322 C GLU 202 25.634 31.021 5.191 1.00 0.00 C ATOM 1323 O GLU 202 25.713 31.624 6.255 1.00 0.00 O ATOM 1324 CB GLU 202 26.218 28.604 5.408 1.00 0.00 C ATOM 1325 CG GLU 202 24.962 28.066 4.740 1.00 0.00 C ATOM 1326 CD GLU 202 24.557 26.705 5.272 1.00 0.00 C ATOM 1327 OE1 GLU 202 25.205 26.223 6.226 1.00 0.00 O ATOM 1328 OE2 GLU 202 23.591 26.121 4.738 1.00 0.00 O ATOM 1329 N TYR 203 24.647 31.264 4.279 1.00 0.00 N ATOM 1330 CA TYR 203 23.576 32.210 4.516 1.00 0.00 C ATOM 1331 C TYR 203 22.346 31.750 3.762 1.00 0.00 C ATOM 1332 O TYR 203 22.456 31.175 2.681 1.00 0.00 O ATOM 1333 CB TYR 203 23.976 33.605 4.030 1.00 0.00 C ATOM 1334 CG TYR 203 24.243 33.683 2.544 1.00 0.00 C ATOM 1335 CD1 TYR 203 23.224 33.994 1.653 1.00 0.00 C ATOM 1336 CD2 TYR 203 25.514 33.445 2.037 1.00 0.00 C ATOM 1337 CE1 TYR 203 23.459 34.067 0.294 1.00 0.00 C ATOM 1338 CE2 TYR 203 25.767 33.514 0.679 1.00 0.00 C ATOM 1339 CZ TYR 203 24.726 33.828 -0.192 1.00 0.00 C ATOM 1340 OH TYR 203 24.962 33.901 -1.546 1.00 0.00 H ATOM 1341 N LEU 204 21.139 32.047 4.301 1.00 0.00 N ATOM 1342 CA LEU 204 19.872 31.708 3.700 1.00 0.00 C ATOM 1343 C LEU 204 19.353 32.999 3.131 1.00 0.00 C ATOM 1344 O LEU 204 19.124 33.956 3.870 1.00 0.00 O ATOM 1345 CB LEU 204 18.914 31.143 4.750 1.00 0.00 C ATOM 1346 CG LEU 204 17.509 30.785 4.264 1.00 0.00 C ATOM 1347 CD1 LEU 204 17.562 29.645 3.258 1.00 0.00 C ATOM 1348 CD2 LEU 204 16.631 30.350 5.428 1.00 0.00 C ATOM 1349 N ARG 205 19.138 33.059 1.801 1.00 0.00 N ATOM 1350 CA ARG 205 18.530 34.190 1.148 1.00 0.00 C ATOM 1351 C ARG 205 17.064 34.293 1.485 1.00 0.00 C ATOM 1352 O ARG 205 16.232 33.571 0.936 1.00 0.00 O ATOM 1353 CB ARG 205 18.659 34.065 -0.372 1.00 0.00 C ATOM 1354 CG ARG 205 18.137 35.268 -1.140 1.00 0.00 C ATOM 1355 CD ARG 205 18.261 35.061 -2.641 1.00 0.00 C ATOM 1356 NE ARG 205 19.656 35.039 -3.076 1.00 0.00 N ATOM 1357 CZ ARG 205 20.372 36.126 -3.348 1.00 0.00 C ATOM 1358 NH1 ARG 205 21.634 36.009 -3.736 1.00 0.00 H ATOM 1359 NH2 ARG 205 19.823 37.327 -3.229 1.00 0.00 H ATOM 1360 N ARG 206 16.745 35.205 2.432 1.00 0.00 N ATOM 1361 CA ARG 206 15.426 35.615 2.836 1.00 0.00 C ATOM 1362 C ARG 206 14.563 36.228 1.767 1.00 0.00 C ATOM 1363 O ARG 206 15.014 36.605 0.684 1.00 0.00 O ATOM 1364 CB ARG 206 15.507 36.667 3.944 1.00 0.00 C ATOM 1365 CG ARG 206 16.054 36.140 5.261 1.00 0.00 C ATOM 1366 CD ARG 206 16.110 37.236 6.313 1.00 0.00 C ATOM 1367 NE ARG 206 16.595 36.737 7.597 1.00 0.00 N ATOM 1368 CZ ARG 206 16.811 37.502 8.662 1.00 0.00 C ATOM 1369 NH1 ARG 206 17.254 36.959 9.789 1.00 0.00 H ATOM 1370 NH2 ARG 206 16.584 38.806 8.599 1.00 0.00 H ATOM 1371 N GLY 207 13.276 36.390 2.122 1.00 0.00 N ATOM 1372 CA GLY 207 12.251 36.694 1.181 1.00 0.00 C ATOM 1373 C GLY 207 12.197 38.180 1.219 1.00 0.00 C ATOM 1374 O GLY 207 12.263 38.793 2.281 1.00 0.00 O ATOM 1375 N ILE 208 12.124 38.740 0.012 1.00 0.00 N ATOM 1376 CA ILE 208 12.044 40.112 -0.323 1.00 0.00 C ATOM 1377 C ILE 208 10.784 40.765 0.192 1.00 0.00 C ATOM 1378 O ILE 208 9.676 40.289 -0.050 1.00 0.00 O ATOM 1379 CB ILE 208 12.060 40.322 -1.849 1.00 0.00 C ATOM 1380 CG1 ILE 208 13.402 39.878 -2.434 1.00 0.00 C ATOM 1381 CG2 ILE 208 11.850 41.791 -2.186 1.00 0.00 C ATOM 1382 CD1 ILE 208 13.429 39.850 -3.946 1.00 0.00 C ATOM 1383 N ASP 209 10.954 41.909 0.898 1.00 0.00 N ATOM 1384 CA ASP 209 9.877 42.620 1.530 1.00 0.00 C ATOM 1385 C ASP 209 8.920 43.346 0.619 1.00 0.00 C ATOM 1386 O ASP 209 7.878 43.774 1.111 1.00 0.00 O ATOM 1387 CB ASP 209 10.424 43.693 2.473 1.00 0.00 C ATOM 1388 CG ASP 209 11.038 43.107 3.729 1.00 0.00 C ATOM 1389 OD1 ASP 209 10.822 41.904 3.990 1.00 0.00 O ATOM 1390 OD2 ASP 209 11.735 43.849 4.452 1.00 0.00 O ATOM 1391 N HIS 210 9.202 43.511 -0.702 1.00 0.00 N ATOM 1392 CA HIS 210 8.284 44.201 -1.600 1.00 0.00 C ATOM 1393 C HIS 210 8.826 44.125 -3.007 1.00 0.00 C ATOM 1394 O HIS 210 9.939 43.651 -3.201 1.00 0.00 O ATOM 1395 CB HIS 210 8.139 45.669 -1.194 1.00 0.00 C ATOM 1396 CG HIS 210 6.947 46.347 -1.794 1.00 0.00 C ATOM 1397 ND1 HIS 210 6.869 46.671 -3.131 1.00 0.00 N ATOM 1398 CD2 HIS 210 5.666 46.828 -1.296 1.00 0.00 C ATOM 1399 CE1 HIS 210 5.686 47.265 -3.370 1.00 0.00 C ATOM 1400 NE2 HIS 210 4.959 47.363 -2.273 1.00 0.00 N ATOM 1401 N ALA 211 8.089 44.635 -4.029 1.00 0.00 N ATOM 1402 CA ALA 211 8.556 44.599 -5.403 1.00 0.00 C ATOM 1403 C ALA 211 7.972 45.798 -6.090 1.00 0.00 C ATOM 1404 O ALA 211 6.853 46.176 -5.754 1.00 0.00 O ATOM 1405 CB ALA 211 8.094 43.320 -6.086 1.00 0.00 C ATOM 1406 N THR 212 8.711 46.425 -7.048 1.00 0.00 N ATOM 1407 CA THR 212 8.333 47.688 -7.640 1.00 0.00 C ATOM 1408 C THR 212 9.083 47.792 -8.959 1.00 0.00 C ATOM 1409 O THR 212 9.623 46.796 -9.437 1.00 0.00 O ATOM 1410 CB THR 212 8.707 48.873 -6.729 1.00 0.00 C ATOM 1411 OG1 THR 212 8.116 50.075 -7.236 1.00 0.00 O ATOM 1412 CG2 THR 212 10.217 49.049 -6.678 1.00 0.00 C ATOM 1413 N VAL 213 9.096 49.001 -9.580 1.00 0.00 N ATOM 1414 CA VAL 213 9.673 49.287 -10.863 1.00 0.00 C ATOM 1415 C VAL 213 11.171 49.194 -10.797 1.00 0.00 C ATOM 1416 O VAL 213 11.785 48.653 -11.715 1.00 0.00 O ATOM 1417 CB VAL 213 9.306 50.703 -11.343 1.00 0.00 C ATOM 1418 CG1 VAL 213 10.077 51.053 -12.606 1.00 0.00 C ATOM 1419 CG2 VAL 213 7.819 50.794 -11.647 1.00 0.00 C ATOM 1420 N ALA 214 11.798 49.708 -9.721 1.00 0.00 N ATOM 1421 CA ALA 214 13.214 49.966 -9.778 1.00 0.00 C ATOM 1422 C ALA 214 13.927 48.744 -9.295 1.00 0.00 C ATOM 1423 O ALA 214 15.134 48.619 -9.491 1.00 0.00 O ATOM 1424 CB ALA 214 13.572 51.152 -8.895 1.00 0.00 C ATOM 1425 N GLY 215 13.210 47.810 -8.641 1.00 0.00 N ATOM 1426 CA GLY 215 13.770 46.532 -8.341 1.00 0.00 C ATOM 1427 C GLY 215 12.849 45.997 -7.312 1.00 0.00 C ATOM 1428 O GLY 215 11.654 46.278 -7.368 1.00 0.00 O ATOM 1429 N THR 216 13.373 45.208 -6.355 1.00 0.00 N ATOM 1430 CA THR 216 12.564 44.635 -5.339 1.00 0.00 C ATOM 1431 C THR 216 12.964 45.279 -4.025 1.00 0.00 C ATOM 1432 O THR 216 13.566 46.352 -4.045 1.00 0.00 O ATOM 1433 CB THR 216 12.766 43.111 -5.249 1.00 0.00 C ATOM 1434 OG1 THR 216 14.126 42.827 -4.899 1.00 0.00 O ATOM 1435 CG2 THR 216 12.454 42.452 -6.585 1.00 0.00 C ATOM 1436 N SER 217 12.635 44.670 -2.854 1.00 0.00 N ATOM 1437 CA SER 217 13.287 44.983 -1.613 1.00 0.00 C ATOM 1438 C SER 217 14.426 44.052 -1.335 1.00 0.00 C ATOM 1439 O SER 217 14.327 42.829 -1.446 1.00 0.00 O ATOM 1440 CB SER 217 12.302 44.875 -0.447 1.00 0.00 C ATOM 1441 OG SER 217 12.954 45.081 0.794 1.00 0.00 O ATOM 1442 N LYS 218 15.540 44.640 -0.893 1.00 0.00 N ATOM 1443 CA LYS 218 16.722 43.880 -0.649 1.00 0.00 C ATOM 1444 C LYS 218 17.364 44.730 0.376 1.00 0.00 C ATOM 1445 O LYS 218 18.131 45.631 0.040 1.00 0.00 O ATOM 1446 CB LYS 218 17.543 43.740 -1.932 1.00 0.00 C ATOM 1447 CG LYS 218 18.760 42.840 -1.795 1.00 0.00 C ATOM 1448 CD LYS 218 19.505 42.713 -3.114 1.00 0.00 C ATOM 1449 CE LYS 218 20.696 41.777 -2.988 1.00 0.00 C ATOM 1450 NZ LYS 218 21.409 41.607 -4.284 1.00 0.00 N ATOM 1451 N ASP 219 16.953 44.508 1.642 1.00 0.00 N ATOM 1452 CA ASP 219 17.373 45.308 2.749 1.00 0.00 C ATOM 1453 C ASP 219 18.806 45.171 3.106 1.00 0.00 C ATOM 1454 O ASP 219 19.520 46.160 2.969 1.00 0.00 O ATOM 1455 CB ASP 219 16.582 44.940 4.006 1.00 0.00 C ATOM 1456 CG ASP 219 15.116 45.312 3.902 1.00 0.00 C ATOM 1457 OD1 ASP 219 14.821 46.443 3.462 1.00 0.00 O ATOM 1458 OD2 ASP 219 14.264 44.474 4.262 1.00 0.00 O ATOM 1459 N ILE 220 19.248 43.986 3.609 1.00 0.00 N ATOM 1460 CA ILE 220 20.640 43.643 3.837 1.00 0.00 C ATOM 1461 C ILE 220 21.124 44.652 4.834 1.00 0.00 C ATOM 1462 O ILE 220 22.014 45.453 4.553 1.00 0.00 O ATOM 1463 CB ILE 220 21.459 43.719 2.535 1.00 0.00 C ATOM 1464 CG1 ILE 220 20.846 42.814 1.465 1.00 0.00 C ATOM 1465 CG2 ILE 220 22.893 43.273 2.782 1.00 0.00 C ATOM 1466 CD1 ILE 220 21.519 42.925 0.113 1.00 0.00 C ATOM 1467 N ILE 221 20.496 44.652 6.028 1.00 0.00 N ATOM 1468 CA ILE 221 20.927 45.411 7.169 1.00 0.00 C ATOM 1469 C ILE 221 20.688 46.881 6.886 1.00 0.00 C ATOM 1470 O ILE 221 21.371 47.746 7.423 1.00 0.00 O ATOM 1471 CB ILE 221 22.424 45.194 7.458 1.00 0.00 C ATOM 1472 CG1 ILE 221 23.267 45.628 6.256 1.00 0.00 C ATOM 1473 CG2 ILE 221 22.705 43.727 7.739 1.00 0.00 C ATOM 1474 CD1 ILE 221 24.752 45.688 6.542 1.00 0.00 C ATOM 1475 N ARG 222 19.693 47.234 6.036 1.00 0.00 N ATOM 1476 CA ARG 222 19.297 48.612 5.951 1.00 0.00 C ATOM 1477 C ARG 222 18.068 49.013 6.724 1.00 0.00 C ATOM 1478 O ARG 222 18.121 50.066 7.356 1.00 0.00 O ATOM 1479 CB ARG 222 18.999 48.995 4.501 1.00 0.00 C ATOM 1480 CG ARG 222 20.237 49.141 3.630 1.00 0.00 C ATOM 1481 CD ARG 222 19.868 49.517 2.204 1.00 0.00 C ATOM 1482 NE ARG 222 19.285 50.855 2.125 1.00 0.00 N ATOM 1483 CZ ARG 222 18.801 51.392 1.010 1.00 0.00 C ATOM 1484 NH1 ARG 222 18.289 52.616 1.032 1.00 0.00 H ATOM 1485 NH2 ARG 222 18.827 50.706 -0.124 1.00 0.00 H ATOM 1486 N HIS 223 16.944 48.256 6.650 1.00 0.00 N ATOM 1487 CA HIS 223 15.636 48.736 7.058 1.00 0.00 C ATOM 1488 C HIS 223 15.575 49.133 8.510 1.00 0.00 C ATOM 1489 O HIS 223 15.323 50.297 8.818 1.00 0.00 O ATOM 1490 CB HIS 223 14.577 47.653 6.846 1.00 0.00 C ATOM 1491 CG HIS 223 13.174 48.131 7.052 1.00 0.00 C ATOM 1492 ND1 HIS 223 12.072 47.342 6.796 1.00 0.00 N ATOM 1493 CD2 HIS 223 12.554 49.367 7.510 1.00 0.00 C ATOM 1494 CE1 HIS 223 10.958 48.042 7.074 1.00 0.00 C ATOM 1495 NE2 HIS 223 11.240 49.257 7.503 1.00 0.00 N ATOM 1496 N GLU 224 15.839 48.196 9.436 1.00 0.00 N ATOM 1497 CA GLU 224 15.662 48.481 10.842 1.00 0.00 C ATOM 1498 C GLU 224 16.831 47.797 11.457 1.00 0.00 C ATOM 1499 O GLU 224 16.695 47.055 12.428 1.00 0.00 O ATOM 1500 CB GLU 224 14.329 47.920 11.339 1.00 0.00 C ATOM 1501 CG GLU 224 13.112 48.482 10.621 1.00 0.00 C ATOM 1502 CD GLU 224 11.809 47.923 11.158 1.00 0.00 C ATOM 1503 OE1 GLU 224 11.855 47.132 12.123 1.00 0.00 O ATOM 1504 OE2 GLU 224 10.742 48.277 10.613 1.00 0.00 O ATOM 1505 N GLN 225 18.027 48.025 10.883 1.00 0.00 N ATOM 1506 CA GLN 225 19.189 47.312 11.316 1.00 0.00 C ATOM 1507 C GLN 225 20.306 48.276 11.111 1.00 0.00 C ATOM 1508 O GLN 225 20.249 49.088 10.187 1.00 0.00 O ATOM 1509 CB GLN 225 19.379 46.043 10.484 1.00 0.00 C ATOM 1510 CG GLN 225 18.296 44.996 10.692 1.00 0.00 C ATOM 1511 CD GLN 225 18.558 43.724 9.908 1.00 0.00 C ATOM 1512 OE1 GLN 225 19.649 43.526 9.375 1.00 0.00 O ATOM 1513 NE2 GLN 225 17.555 42.857 9.840 1.00 0.00 N ATOM 1514 N PHE 226 21.326 48.206 11.992 1.00 0.00 N ATOM 1515 CA PHE 226 22.369 49.185 12.086 1.00 0.00 C ATOM 1516 C PHE 226 23.685 48.473 11.903 1.00 0.00 C ATOM 1517 O PHE 226 23.841 47.344 12.369 1.00 0.00 O ATOM 1518 CB PHE 226 22.337 49.872 13.453 1.00 0.00 C ATOM 1519 CG PHE 226 21.087 50.667 13.703 1.00 0.00 C ATOM 1520 CD1 PHE 226 19.997 50.091 14.331 1.00 0.00 C ATOM 1521 CD2 PHE 226 21.000 51.990 13.307 1.00 0.00 C ATOM 1522 CE1 PHE 226 18.847 50.823 14.561 1.00 0.00 C ATOM 1523 CE2 PHE 226 19.851 52.722 13.537 1.00 0.00 C ATOM 1524 CZ PHE 226 18.777 52.144 14.160 1.00 0.00 C ATOM 1525 N VAL 227 24.653 49.142 11.227 1.00 0.00 N ATOM 1526 CA VAL 227 25.978 48.628 10.967 1.00 0.00 C ATOM 1527 C VAL 227 26.927 49.284 11.950 1.00 0.00 C ATOM 1528 O VAL 227 26.666 50.404 12.389 1.00 0.00 O ATOM 1529 CB VAL 227 26.434 48.940 9.530 1.00 0.00 C ATOM 1530 CG1 VAL 227 27.864 48.472 9.311 1.00 0.00 C ATOM 1531 CG2 VAL 227 25.538 48.237 8.522 1.00 0.00 C ATOM 1532 N GLU 228 28.055 48.608 12.270 1.00 0.00 N ATOM 1533 CA GLU 228 29.065 49.090 13.195 1.00 0.00 C ATOM 1534 C GLU 228 30.311 48.767 12.431 1.00 0.00 C ATOM 1535 O GLU 228 30.276 47.817 11.647 1.00 0.00 O ATOM 1536 CB GLU 228 28.964 48.351 14.531 1.00 0.00 C ATOM 1537 CG GLU 228 27.630 48.528 15.238 1.00 0.00 C ATOM 1538 CD GLU 228 27.458 49.917 15.820 1.00 0.00 C ATOM 1539 OE1 GLU 228 28.466 50.650 15.917 1.00 0.00 O ATOM 1540 OE2 GLU 228 26.316 50.273 16.180 1.00 0.00 O ATOM 1541 N ASN 229 31.407 49.530 12.626 1.00 0.00 N ATOM 1542 CA ASN 229 32.588 49.383 11.797 1.00 0.00 C ATOM 1543 C ASN 229 33.679 49.742 12.747 1.00 0.00 C ATOM 1544 O ASN 229 33.388 50.309 13.801 1.00 0.00 O ATOM 1545 CB ASN 229 32.519 50.325 10.594 1.00 0.00 C ATOM 1546 CG ASN 229 31.390 49.976 9.644 1.00 0.00 C ATOM 1547 OD1 ASN 229 31.479 49.011 8.886 1.00 0.00 O ATOM 1548 ND2 ASN 229 30.321 50.763 9.684 1.00 0.00 N ATOM 1549 N ASP 230 34.947 49.431 12.408 1.00 0.00 N ATOM 1550 CA ASP 230 35.897 49.057 13.430 1.00 0.00 C ATOM 1551 C ASP 230 37.133 49.734 12.986 1.00 0.00 C ATOM 1552 O ASP 230 37.407 49.757 11.785 1.00 0.00 O ATOM 1553 CB ASP 230 36.055 47.537 13.485 1.00 0.00 C ATOM 1554 CG ASP 230 34.808 46.840 13.993 1.00 0.00 C ATOM 1555 OD1 ASP 230 34.493 46.986 15.194 1.00 0.00 O ATOM 1556 OD2 ASP 230 34.145 46.149 13.192 1.00 0.00 O ATOM 1557 N GLU 231 37.866 50.353 13.940 1.00 0.00 N ATOM 1558 CA GLU 231 38.950 51.226 13.596 1.00 0.00 C ATOM 1559 C GLU 231 40.241 50.540 13.663 1.00 0.00 C ATOM 1560 O GLU 231 41.168 51.027 13.025 1.00 0.00 O ATOM 1561 CB GLU 231 39.004 52.417 14.555 1.00 0.00 C ATOM 1562 CG GLU 231 37.830 53.374 14.423 1.00 0.00 C ATOM 1563 CD GLU 231 37.774 54.386 15.549 1.00 0.00 C ATOM 1564 OE1 GLU 231 38.631 54.317 16.454 1.00 0.00 O ATOM 1565 OE2 GLU 231 36.872 55.250 15.529 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 289 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.10 32.4 68 25.4 268 ARMSMC SECONDARY STRUCTURE . . 81.02 34.1 41 22.8 180 ARMSMC SURFACE . . . . . . . . 90.80 26.2 42 25.6 164 ARMSMC BURIED . . . . . . . . 80.76 42.3 26 25.0 104 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.40 63.3 30 25.6 117 ARMSSC1 RELIABLE SIDE CHAINS . 73.89 60.7 28 26.7 105 ARMSSC1 SECONDARY STRUCTURE . . 89.48 44.4 18 22.0 82 ARMSSC1 SURFACE . . . . . . . . 71.39 60.0 20 28.2 71 ARMSSC1 BURIED . . . . . . . . 71.42 70.0 10 21.7 46 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.29 64.0 25 32.1 78 ARMSSC2 RELIABLE SIDE CHAINS . 55.97 68.4 19 35.2 54 ARMSSC2 SECONDARY STRUCTURE . . 48.84 71.4 14 27.5 51 ARMSSC2 SURFACE . . . . . . . . 71.46 64.7 17 36.2 47 ARMSSC2 BURIED . . . . . . . . 45.46 62.5 8 25.8 31 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.94 55.6 9 33.3 27 ARMSSC3 RELIABLE SIDE CHAINS . 81.55 50.0 8 33.3 24 ARMSSC3 SECONDARY STRUCTURE . . 93.24 33.3 6 37.5 16 ARMSSC3 SURFACE . . . . . . . . 46.71 66.7 6 27.3 22 ARMSSC3 BURIED . . . . . . . . 115.74 33.3 3 60.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.40 25.0 4 25.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 101.40 25.0 4 25.0 16 ARMSSC4 SECONDARY STRUCTURE . . 101.40 25.0 4 36.4 11 ARMSSC4 SURFACE . . . . . . . . 6.76 100.0 1 7.7 13 ARMSSC4 BURIED . . . . . . . . 117.02 0.0 3 100.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.35 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.35 35 25.9 135 CRMSCA CRN = ALL/NP . . . . . 0.2671 CRMSCA SECONDARY STRUCTURE . . 9.45 21 23.3 90 CRMSCA SURFACE . . . . . . . . 9.58 22 26.5 83 CRMSCA BURIED . . . . . . . . 8.93 13 25.0 52 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.44 172 25.9 664 CRMSMC SECONDARY STRUCTURE . . 9.57 103 23.1 445 CRMSMC SURFACE . . . . . . . . 9.62 109 26.7 408 CRMSMC BURIED . . . . . . . . 9.13 63 24.6 256 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.24 149 30.0 496 CRMSSC RELIABLE SIDE CHAINS . 11.02 125 30.5 410 CRMSSC SECONDARY STRUCTURE . . 11.94 86 25.2 341 CRMSSC SURFACE . . . . . . . . 11.87 91 31.1 293 CRMSSC BURIED . . . . . . . . 10.18 58 28.6 203 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.33 289 27.9 1036 CRMSALL SECONDARY STRUCTURE . . 10.76 170 24.3 701 CRMSALL SURFACE . . . . . . . . 10.70 179 28.6 625 CRMSALL BURIED . . . . . . . . 9.70 110 26.8 411 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.428 1.000 0.500 35 25.9 135 ERRCA SECONDARY STRUCTURE . . 8.460 1.000 0.500 21 23.3 90 ERRCA SURFACE . . . . . . . . 8.731 1.000 0.500 22 26.5 83 ERRCA BURIED . . . . . . . . 7.915 1.000 0.500 13 25.0 52 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.535 1.000 0.500 172 25.9 664 ERRMC SECONDARY STRUCTURE . . 8.647 1.000 0.500 103 23.1 445 ERRMC SURFACE . . . . . . . . 8.701 1.000 0.500 109 26.7 408 ERRMC BURIED . . . . . . . . 8.247 1.000 0.500 63 24.6 256 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.394 1.000 0.500 149 30.0 496 ERRSC RELIABLE SIDE CHAINS . 10.114 1.000 0.500 125 30.5 410 ERRSC SECONDARY STRUCTURE . . 10.957 1.000 0.500 86 25.2 341 ERRSC SURFACE . . . . . . . . 10.927 1.000 0.500 91 31.1 293 ERRSC BURIED . . . . . . . . 9.558 1.000 0.500 58 28.6 203 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.403 1.000 0.500 289 27.9 1036 ERRALL SECONDARY STRUCTURE . . 9.727 1.000 0.500 170 24.3 701 ERRALL SURFACE . . . . . . . . 9.697 1.000 0.500 179 28.6 625 ERRALL BURIED . . . . . . . . 8.924 1.000 0.500 110 26.8 411 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 6 23 35 135 DISTCA CA (P) 0.00 0.74 2.22 4.44 17.04 135 DISTCA CA (RMS) 0.00 1.88 2.48 3.13 6.54 DISTCA ALL (N) 0 3 8 39 174 289 1036 DISTALL ALL (P) 0.00 0.29 0.77 3.76 16.80 1036 DISTALL ALL (RMS) 0.00 1.93 2.32 3.85 7.00 DISTALL END of the results output