####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 138), selected 20 , name T0571TS042_1_2-D1 # Molecule2: number of CA atoms 165 ( 1292), selected 20 , name T0571-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0571TS042_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 177 - 196 4.01 4.01 LCS_AVERAGE: 12.12 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 184 - 195 1.99 5.30 LCS_AVERAGE: 6.18 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 187 - 194 0.86 12.27 LCS_AVERAGE: 3.61 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 177 N 177 3 7 20 3 3 3 5 9 9 10 12 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT A 178 A 178 5 7 20 4 4 5 6 6 6 10 12 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT G 179 G 179 5 7 20 4 4 5 6 9 9 10 12 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT D 180 D 180 5 7 20 4 4 5 6 9 9 10 12 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT W 181 W 181 5 7 20 4 4 5 6 6 7 10 12 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT S 182 S 182 5 7 20 3 4 5 6 6 7 9 11 12 16 20 20 20 20 20 20 20 20 20 20 LCS_GDT I 183 I 183 4 7 20 3 4 5 6 6 6 7 10 12 16 20 20 20 20 20 20 20 20 20 20 LCS_GDT L 184 L 184 4 12 20 3 5 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT P 185 P 185 4 12 20 3 5 7 8 11 11 13 13 14 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT Q 186 Q 186 4 12 20 3 4 5 6 8 11 13 13 14 16 20 20 20 20 20 20 20 20 20 20 LCS_GDT N 187 N 187 8 12 20 4 7 8 8 10 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT F 188 F 188 8 12 20 4 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT V 189 V 189 8 12 20 4 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT L 190 L 190 8 12 20 4 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT Y 191 Y 191 8 12 20 3 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT A 192 A 192 8 12 20 3 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT V 193 V 193 8 12 20 3 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT K 194 K 194 8 12 20 3 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT Y 195 Y 195 6 12 20 3 5 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 LCS_GDT V 196 V 196 5 11 20 3 3 7 10 11 11 13 13 14 17 20 20 20 20 20 20 20 20 20 20 LCS_AVERAGE LCS_A: 7.30 ( 3.61 6.18 12.12 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 9 10 11 11 13 13 15 17 20 20 20 20 20 20 20 20 20 20 GDT PERCENT_AT 2.42 4.24 5.45 6.06 6.67 6.67 7.88 7.88 9.09 10.30 12.12 12.12 12.12 12.12 12.12 12.12 12.12 12.12 12.12 12.12 GDT RMS_LOCAL 0.22 0.74 1.19 1.41 1.57 1.57 2.09 2.09 3.33 3.60 4.01 4.01 4.01 4.01 4.01 4.01 4.01 4.01 4.01 4.01 GDT RMS_ALL_AT 18.67 11.27 5.70 5.74 5.70 5.70 5.35 5.35 4.14 4.12 4.01 4.01 4.01 4.01 4.01 4.01 4.01 4.01 4.01 4.01 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 177 N 177 7.972 3 0.396 0.373 10.248 3.690 1.845 LGA A 178 A 178 8.645 0 0.623 0.606 8.645 4.881 4.476 LGA G 179 G 179 8.268 0 0.054 0.054 8.437 4.762 4.762 LGA D 180 D 180 9.062 3 0.034 0.035 10.123 2.143 1.071 LGA W 181 W 181 9.174 9 0.038 0.043 9.490 4.762 1.463 LGA S 182 S 182 8.719 1 0.545 0.504 9.941 1.905 1.349 LGA I 183 I 183 8.178 3 0.134 0.180 10.037 16.786 8.393 LGA L 184 L 184 2.178 3 0.037 0.057 4.575 53.095 31.964 LGA P 185 P 185 2.947 2 0.658 0.601 5.632 61.190 38.027 LGA Q 186 Q 186 3.311 4 0.224 0.218 5.521 54.286 26.508 LGA N 187 N 187 3.424 3 0.686 0.642 5.115 55.714 31.131 LGA F 188 F 188 0.470 6 0.033 0.038 2.661 80.000 35.714 LGA V 189 V 189 0.955 2 0.041 0.062 2.718 79.881 53.810 LGA L 190 L 190 2.071 3 0.158 0.220 3.692 81.786 46.310 LGA Y 191 Y 191 0.701 7 0.194 0.240 1.601 83.690 33.968 LGA A 192 A 192 1.730 0 0.107 0.106 2.625 81.548 76.667 LGA V 193 V 193 2.101 2 0.055 0.071 3.766 66.905 44.422 LGA K 194 K 194 0.873 4 0.207 0.271 2.492 79.524 45.397 LGA Y 195 Y 195 0.335 7 0.084 0.126 2.199 86.548 36.389 LGA V 196 V 196 2.529 2 0.084 0.105 3.447 64.881 44.218 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 163 99 60.74 165 SUMMARY(RMSD_GDC): 4.015 3.925 4.207 5.867 3.442 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 165 4.0 13 2.09 7.576 7.707 0.594 LGA_LOCAL RMSD: 2.088 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.350 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 4.015 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.299928 * X + -0.018002 * Y + 0.953792 * Z + 56.075531 Y_new = -0.901797 * X + -0.320741 * Y + -0.289632 * Z + 29.814569 Z_new = 0.311134 * X + -0.946996 * Y + 0.079965 * Z + -6.212979 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.891877 -0.316386 -1.486555 [DEG: -108.3966 -18.1276 -85.1733 ] ZXZ: 1.275982 1.490746 2.824155 [DEG: 73.1084 85.4134 161.8121 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0571TS042_1_2-D1 REMARK 2: T0571-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0571TS042_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 165 4.0 13 2.09 7.707 4.01 REMARK ---------------------------------------------------------- MOLECULE T0571TS042_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0571 REMARK PARENT N/A ATOM 1 N ASN 177 56.076 29.815 -6.213 1.00 0.00 N ATOM 2 CA ASN 177 55.638 28.500 -5.759 1.00 0.00 C ATOM 3 C ASN 177 55.447 27.547 -6.933 1.00 0.00 C ATOM 4 O ASN 177 54.771 26.526 -6.813 1.00 0.00 O ATOM 5 CB ASN 177 54.361 28.590 -4.944 1.00 0.00 C ATOM 6 CEN ASN 177 54.081 28.682 -3.937 1.00 0.00 C ATOM 7 H ASN 177 55.518 30.622 -6.018 1.00 0.00 H ATOM 8 N ALA 178 56.047 27.888 -8.068 1.00 0.00 N ATOM 9 CA ALA 178 55.976 27.045 -9.255 1.00 0.00 C ATOM 10 C ALA 178 56.607 25.681 -9.003 1.00 0.00 C ATOM 11 O ALA 178 57.683 25.585 -8.411 1.00 0.00 O ATOM 12 CB ALA 178 56.648 27.733 -10.435 1.00 0.00 C ATOM 13 CEN ALA 178 56.647 27.732 -10.434 1.00 0.00 C ATOM 14 H ALA 178 56.567 28.753 -8.110 1.00 0.00 H ATOM 15 N GLY 179 55.932 24.630 -9.453 1.00 0.00 N ATOM 16 CA GLY 179 56.363 23.266 -9.172 1.00 0.00 C ATOM 17 C GLY 179 57.703 22.964 -9.830 1.00 0.00 C ATOM 18 O GLY 179 58.333 21.947 -9.538 1.00 0.00 O ATOM 19 CEN GLY 179 56.362 23.265 -9.171 1.00 0.00 C ATOM 20 H GLY 179 55.100 24.780 -10.006 1.00 0.00 H ATOM 21 N ASP 180 58.133 23.852 -10.718 1.00 0.00 N ATOM 22 CA ASP 180 59.472 23.776 -11.291 1.00 0.00 C ATOM 23 C ASP 180 60.523 24.260 -10.300 1.00 0.00 C ATOM 24 O ASP 180 61.718 24.253 -10.595 1.00 0.00 O ATOM 25 CB ASP 180 59.550 24.594 -12.583 1.00 0.00 C ATOM 26 CEN ASP 180 59.500 24.473 -13.592 1.00 0.00 C ATOM 27 H ASP 180 57.517 24.599 -11.005 1.00 0.00 H ATOM 28 N TRP 181 60.070 24.681 -9.124 1.00 0.00 N ATOM 29 CA TRP 181 60.973 25.153 -8.081 1.00 0.00 C ATOM 30 C TRP 181 61.767 24.001 -7.477 1.00 0.00 C ATOM 31 O TRP 181 61.232 22.916 -7.254 1.00 0.00 O ATOM 32 CB TRP 181 60.189 25.880 -6.986 1.00 0.00 C ATOM 33 CEN TRP 181 60.009 27.446 -6.218 1.00 0.00 C ATOM 34 H TRP 181 59.076 24.674 -8.948 1.00 0.00 H ATOM 35 N SER 182 63.046 24.246 -7.214 1.00 0.00 N ATOM 36 CA SER 182 63.919 23.226 -6.643 1.00 0.00 C ATOM 37 C SER 182 63.923 23.295 -5.121 1.00 0.00 C ATOM 38 O SER 182 64.751 23.982 -4.523 1.00 0.00 O ATOM 39 CB SER 182 65.327 23.384 -7.182 1.00 0.00 C ATOM 40 CEN SER 182 65.777 23.630 -7.366 1.00 0.00 C ATOM 41 H SER 182 63.424 25.160 -7.415 1.00 0.00 H ATOM 42 N ILE 183 62.991 22.579 -4.499 1.00 0.00 N ATOM 43 CA ILE 183 62.885 22.558 -3.045 1.00 0.00 C ATOM 44 C ILE 183 63.531 21.307 -2.464 1.00 0.00 C ATOM 45 O ILE 183 63.705 20.307 -3.159 1.00 0.00 O ATOM 46 CB ILE 183 61.418 22.628 -2.585 1.00 0.00 C ATOM 47 CEN ILE 183 60.587 23.295 -2.351 1.00 0.00 C ATOM 48 H ILE 183 62.341 22.036 -5.048 1.00 0.00 H ATOM 49 N LEU 184 63.885 21.371 -1.185 1.00 0.00 N ATOM 50 CA LEU 184 64.396 20.205 -0.472 1.00 0.00 C ATOM 51 C LEU 184 63.823 20.126 0.937 1.00 0.00 C ATOM 52 O LEU 184 63.429 21.138 1.515 1.00 0.00 O ATOM 53 CB LEU 184 65.928 20.243 -0.424 1.00 0.00 C ATOM 54 CEN LEU 184 67.018 19.473 -1.195 1.00 0.00 C ATOM 55 H LEU 184 63.797 22.248 -0.693 1.00 0.00 H ATOM 56 N PRO 185 63.778 18.916 1.485 1.00 0.00 N ATOM 57 CA PRO 185 63.163 18.687 2.786 1.00 0.00 C ATOM 58 C PRO 185 63.888 19.458 3.882 1.00 0.00 C ATOM 59 O PRO 185 63.308 19.771 4.923 1.00 0.00 O ATOM 60 CB PRO 185 63.262 17.165 2.986 1.00 0.00 C ATOM 61 CEN PRO 185 64.113 17.207 1.419 1.00 0.00 C ATOM 62 N GLN 186 65.159 19.762 3.642 1.00 0.00 N ATOM 63 CA GLN 186 65.964 20.502 4.606 1.00 0.00 C ATOM 64 C GLN 186 65.639 21.990 4.568 1.00 0.00 C ATOM 65 O GLN 186 65.980 22.733 5.488 1.00 0.00 O ATOM 66 CB GLN 186 67.456 20.292 4.332 1.00 0.00 C ATOM 67 CEN GLN 186 68.881 19.414 4.829 1.00 0.00 C ATOM 68 H GLN 186 65.578 19.473 2.770 1.00 0.00 H ATOM 69 N ASN 187 64.979 22.420 3.498 1.00 0.00 N ATOM 70 CA ASN 187 64.479 23.785 3.403 1.00 0.00 C ATOM 71 C ASN 187 63.458 24.075 4.497 1.00 0.00 C ATOM 72 O ASN 187 62.909 23.157 5.106 1.00 0.00 O ATOM 73 CB ASN 187 63.877 24.063 2.038 1.00 0.00 C ATOM 74 CEN ASN 187 64.186 24.448 1.111 1.00 0.00 C ATOM 75 H ASN 187 64.819 21.783 2.731 1.00 0.00 H ATOM 76 N PHE 188 63.207 25.357 4.740 1.00 0.00 N ATOM 77 CA PHE 188 62.212 25.770 5.722 1.00 0.00 C ATOM 78 C PHE 188 60.937 26.256 5.046 1.00 0.00 C ATOM 79 O PHE 188 60.972 26.754 3.921 1.00 0.00 O ATOM 80 CB PHE 188 62.778 26.866 6.628 1.00 0.00 C ATOM 81 CEN PHE 188 63.435 26.995 8.070 1.00 0.00 C ATOM 82 H PHE 188 63.719 26.064 4.231 1.00 0.00 H ATOM 83 N VAL 189 59.813 26.108 5.737 1.00 0.00 N ATOM 84 CA VAL 189 58.515 26.460 5.174 1.00 0.00 C ATOM 85 C VAL 189 57.667 27.227 6.180 1.00 0.00 C ATOM 86 O VAL 189 57.562 26.837 7.343 1.00 0.00 O ATOM 87 CB VAL 189 57.742 25.211 4.712 1.00 0.00 C ATOM 88 CEN VAL 189 57.522 24.869 4.156 1.00 0.00 C ATOM 89 H VAL 189 59.858 25.742 6.677 1.00 0.00 H ATOM 90 N LEU 190 57.064 28.320 5.726 1.00 0.00 N ATOM 91 CA LEU 190 56.238 29.155 6.591 1.00 0.00 C ATOM 92 C LEU 190 54.819 29.272 6.052 1.00 0.00 C ATOM 93 O LEU 190 54.567 29.007 4.877 1.00 0.00 O ATOM 94 CB LEU 190 56.868 30.545 6.744 1.00 0.00 C ATOM 95 CEN LEU 190 57.650 31.218 7.888 1.00 0.00 C ATOM 96 H LEU 190 57.180 28.580 4.757 1.00 0.00 H ATOM 97 N TYR 191 53.893 29.671 6.918 1.00 0.00 N ATOM 98 CA TYR 191 52.473 29.634 6.593 1.00 0.00 C ATOM 99 C TYR 191 51.827 31.000 6.786 1.00 0.00 C ATOM 100 O TYR 191 52.238 31.774 7.650 1.00 0.00 O ATOM 101 CB TYR 191 51.754 28.588 7.448 1.00 0.00 C ATOM 102 CEN TYR 191 51.148 26.948 7.347 1.00 0.00 C ATOM 103 H TYR 191 54.182 30.008 7.825 1.00 0.00 H ATOM 104 N ALA 192 50.814 31.290 5.977 1.00 0.00 N ATOM 105 CA ALA 192 50.034 32.512 6.133 1.00 0.00 C ATOM 106 C ALA 192 48.547 32.245 5.940 1.00 0.00 C ATOM 107 O ALA 192 48.118 31.810 4.871 1.00 0.00 O ATOM 108 CB ALA 192 50.515 33.577 5.158 1.00 0.00 C ATOM 109 CEN ALA 192 50.515 33.576 5.159 1.00 0.00 C ATOM 110 H ALA 192 50.579 30.648 5.233 1.00 0.00 H ATOM 111 N VAL 193 47.763 32.507 6.980 1.00 0.00 N ATOM 112 CA VAL 193 46.330 32.243 6.946 1.00 0.00 C ATOM 113 C VAL 193 45.529 33.536 7.027 1.00 0.00 C ATOM 114 O VAL 193 45.719 34.340 7.940 1.00 0.00 O ATOM 115 CB VAL 193 45.900 31.311 8.096 1.00 0.00 C ATOM 116 CEN VAL 193 45.680 30.675 8.240 1.00 0.00 C ATOM 117 H VAL 193 48.171 32.900 7.816 1.00 0.00 H ATOM 118 N LYS 194 44.634 33.732 6.065 1.00 0.00 N ATOM 119 CA LYS 194 43.812 34.936 6.017 1.00 0.00 C ATOM 120 C LYS 194 42.533 34.762 6.827 1.00 0.00 C ATOM 121 O LYS 194 41.782 33.809 6.621 1.00 0.00 O ATOM 122 CB LYS 194 43.473 35.296 4.570 1.00 0.00 C ATOM 123 CEN LYS 194 43.814 36.529 2.884 1.00 0.00 C ATOM 124 H LYS 194 44.518 33.030 5.349 1.00 0.00 H ATOM 125 N TYR 195 42.292 35.689 7.748 1.00 0.00 N ATOM 126 CA TYR 195 41.067 35.681 8.540 1.00 0.00 C ATOM 127 C TYR 195 40.191 36.883 8.211 1.00 0.00 C ATOM 128 O TYR 195 40.685 37.999 8.054 1.00 0.00 O ATOM 129 CB TYR 195 41.396 35.665 10.034 1.00 0.00 C ATOM 130 CEN TYR 195 41.495 34.549 11.381 1.00 0.00 C ATOM 131 H TYR 195 42.973 36.418 7.903 1.00 0.00 H ATOM 132 N VAL 196 38.887 36.648 8.109 1.00 0.00 N ATOM 133 CA VAL 196 37.922 37.732 7.970 1.00 0.00 C ATOM 134 C VAL 196 37.296 38.086 9.313 1.00 0.00 C ATOM 135 O VAL 196 36.878 37.206 10.066 1.00 0.00 O ATOM 136 CB VAL 196 36.805 37.370 6.973 1.00 0.00 C ATOM 137 CEN VAL 196 36.555 37.509 6.346 1.00 0.00 C ATOM 138 H VAL 196 38.556 35.694 8.127 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 99 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 61.02 55.3 38 11.6 328 ARMSMC SECONDARY STRUCTURE . . 42.70 59.1 22 17.7 124 ARMSMC SURFACE . . . . . . . . 63.69 50.0 18 8.9 202 ARMSMC BURIED . . . . . . . . 58.52 60.0 20 15.9 126 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 143 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 126 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 54 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 86 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 106 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 78 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 38 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 63 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 43 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.01 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.01 20 12.1 165 CRMSCA CRN = ALL/NP . . . . . 0.2007 CRMSCA SECONDARY STRUCTURE . . 3.64 11 17.7 62 CRMSCA SURFACE . . . . . . . . 4.57 10 9.8 102 CRMSCA BURIED . . . . . . . . 3.37 10 15.9 63 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.21 99 12.1 815 CRMSMC SECONDARY STRUCTURE . . 3.76 55 17.9 307 CRMSMC SURFACE . . . . . . . . 4.74 49 9.8 501 CRMSMC BURIED . . . . . . . . 3.62 50 15.9 314 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.24 19 3.0 632 CRMSSC RELIABLE SIDE CHAINS . 5.24 19 3.6 522 CRMSSC SECONDARY STRUCTURE . . 4.49 11 4.3 258 CRMSSC SURFACE . . . . . . . . 5.85 9 2.4 370 CRMSSC BURIED . . . . . . . . 4.62 10 3.8 262 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.21 99 7.7 1292 CRMSALL SECONDARY STRUCTURE . . 3.76 55 10.9 506 CRMSALL SURFACE . . . . . . . . 4.74 49 6.3 778 CRMSALL BURIED . . . . . . . . 3.62 50 9.7 514 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.834 1.000 0.500 20 12.1 165 ERRCA SECONDARY STRUCTURE . . 3.415 1.000 0.500 11 17.7 62 ERRCA SURFACE . . . . . . . . 4.493 1.000 0.500 10 9.8 102 ERRCA BURIED . . . . . . . . 3.175 1.000 0.500 10 15.9 63 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.956 1.000 0.500 99 12.1 815 ERRMC SECONDARY STRUCTURE . . 3.473 1.000 0.500 55 17.9 307 ERRMC SURFACE . . . . . . . . 4.552 1.000 0.500 49 9.8 501 ERRMC BURIED . . . . . . . . 3.372 1.000 0.500 50 15.9 314 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.989 1.000 0.500 19 3.0 632 ERRSC RELIABLE SIDE CHAINS . 4.989 1.000 0.500 19 3.6 522 ERRSC SECONDARY STRUCTURE . . 4.288 1.000 0.500 11 4.3 258 ERRSC SURFACE . . . . . . . . 5.692 1.000 0.500 9 2.4 370 ERRSC BURIED . . . . . . . . 4.356 1.000 0.500 10 3.8 262 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.956 1.000 0.500 99 7.7 1292 ERRALL SECONDARY STRUCTURE . . 3.473 1.000 0.500 55 10.9 506 ERRALL SURFACE . . . . . . . . 4.552 1.000 0.500 49 6.3 778 ERRALL BURIED . . . . . . . . 3.372 1.000 0.500 50 9.7 514 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 6 15 20 20 165 DISTCA CA (P) 0.00 0.61 3.64 9.09 12.12 165 DISTCA CA (RMS) 0.00 1.80 2.38 3.46 4.01 DISTCA ALL (N) 0 4 31 75 99 99 1292 DISTALL ALL (P) 0.00 0.31 2.40 5.80 7.66 1292 DISTALL ALL (RMS) 0.00 1.59 2.43 3.44 4.21 DISTALL END of the results output