####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 53 , name T0571AL396_1-D2 # Molecule2: number of CA atoms 135 ( 1036), selected 53 , name T0571-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0571AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 279 - 293 4.26 22.40 LCS_AVERAGE: 9.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 281 - 290 1.92 18.75 LCS_AVERAGE: 5.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 280 - 285 0.98 25.52 LONGEST_CONTINUOUS_SEGMENT: 6 284 - 289 0.82 24.35 LONGEST_CONTINUOUS_SEGMENT: 6 285 - 290 0.84 24.61 LONGEST_CONTINUOUS_SEGMENT: 6 299 - 304 0.36 18.66 LONGEST_CONTINUOUS_SEGMENT: 6 316 - 321 0.98 20.83 LONGEST_CONTINUOUS_SEGMENT: 6 317 - 322 0.85 19.41 LCS_AVERAGE: 3.66 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 279 N 279 4 8 15 3 4 5 7 7 8 9 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT V 280 V 280 6 8 15 3 4 6 7 7 8 9 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT V 281 V 281 6 10 15 3 4 6 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT V 282 V 282 6 10 15 3 4 6 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT S 283 S 283 6 10 15 3 4 6 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT G 284 G 284 6 10 15 3 5 7 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT S 285 S 285 6 10 15 3 5 7 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT G 286 G 286 6 10 15 3 5 7 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT K 287 K 287 6 10 15 3 5 7 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT F 288 F 288 6 10 15 3 5 7 7 8 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT V 289 V 289 6 10 15 3 5 7 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT S 290 S 290 6 10 15 3 4 7 7 9 9 10 10 11 11 13 13 17 18 19 19 20 21 23 25 LCS_GDT K 291 K 291 4 8 15 3 3 5 5 6 7 9 10 11 11 13 13 15 15 16 16 18 21 23 25 LCS_GDT G 292 G 292 4 8 15 4 4 5 5 7 8 9 10 10 11 13 13 15 15 16 16 20 21 23 25 LCS_GDT E 293 E 293 4 6 15 4 4 5 5 6 6 7 8 9 9 10 12 15 15 15 16 18 20 20 25 LCS_GDT K 294 K 294 4 6 13 4 4 5 5 6 6 7 8 9 9 10 12 13 14 14 16 18 20 20 23 LCS_GDT N 295 N 295 4 6 13 4 4 5 5 6 6 7 8 9 9 10 12 13 14 14 16 18 20 20 23 LCS_GDT S 296 S 296 4 5 13 3 4 4 4 5 5 7 9 9 10 10 12 14 16 17 18 18 20 20 23 LCS_GDT L 297 L 297 4 8 13 3 4 4 5 5 9 10 10 10 10 10 12 13 16 17 18 18 20 20 23 LCS_GDT G 298 G 298 4 8 13 4 4 6 6 7 9 10 10 10 10 10 13 14 16 17 18 18 20 20 23 LCS_GDT G 299 G 299 6 8 13 5 6 6 6 7 9 10 10 10 10 10 13 14 16 17 18 18 20 20 23 LCS_GDT K 300 K 300 6 8 13 5 6 6 6 7 9 10 10 10 10 11 13 14 16 17 18 18 20 20 23 LCS_GDT D 301 D 301 6 8 13 5 6 6 6 7 9 10 10 10 10 11 13 14 16 17 18 18 20 20 23 LCS_GDT R 302 R 302 6 8 13 4 6 6 6 7 9 10 10 10 10 11 13 14 16 17 18 18 20 20 23 LCS_GDT N 303 N 303 6 8 13 5 6 6 6 7 9 10 10 10 10 11 13 14 16 17 18 18 20 20 23 LCS_GDT A 304 A 304 6 8 13 5 6 6 6 7 9 10 10 10 10 10 11 14 16 17 18 18 21 23 25 LCS_GDT I 305 I 305 3 8 13 3 3 3 6 7 7 8 9 9 10 10 11 12 13 14 16 17 21 23 25 LCS_GDT Y 306 Y 306 3 3 13 3 3 3 3 3 4 4 5 6 8 9 11 11 13 13 16 17 19 20 23 LCS_GDT L 307 L 307 3 3 12 3 3 3 3 3 4 5 5 5 9 11 11 15 15 16 16 17 21 23 25 LCS_GDT D 308 D 308 3 3 11 3 3 3 3 3 4 5 5 7 10 11 13 15 15 16 16 17 20 20 23 LCS_GDT Y 309 Y 309 3 3 12 3 3 3 3 3 4 5 5 5 9 9 10 12 13 14 16 17 20 20 23 LCS_GDT T 310 T 310 3 6 12 0 3 5 5 6 6 7 7 9 9 9 10 12 13 14 15 17 20 20 22 LCS_GDT V 311 V 311 5 6 14 3 4 5 5 6 6 7 7 9 9 9 10 12 13 15 16 17 20 20 22 LCS_GDT N 312 N 312 5 6 14 3 4 5 5 6 6 7 7 9 9 12 13 14 15 16 16 17 20 20 22 LCS_GDT L 313 L 313 5 6 14 3 4 5 5 6 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT T 314 T 314 5 6 14 3 4 5 5 6 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT D 315 D 315 5 6 14 3 4 5 5 6 6 7 7 9 11 11 12 14 14 16 16 17 18 19 22 LCS_GDT N 316 N 316 6 8 14 3 4 7 7 7 8 8 8 10 12 12 13 14 15 16 16 17 20 20 22 LCS_GDT N 317 N 317 6 8 14 3 5 7 7 7 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT I 318 I 318 6 8 14 3 5 7 7 7 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT Q 319 Q 319 6 8 14 3 5 7 7 7 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT L 320 L 320 6 8 14 3 5 7 7 7 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT A 321 A 321 6 8 14 3 5 7 7 7 8 9 9 10 12 12 13 14 15 16 16 17 20 20 23 LCS_GDT T 322 T 322 6 8 14 0 4 7 7 7 8 9 9 10 12 12 13 14 15 16 16 18 20 22 25 LCS_GDT K 323 K 323 4 8 14 1 3 4 7 7 9 10 10 10 12 16 16 17 18 19 19 20 21 23 25 LCS_GDT D 324 D 324 4 6 14 3 4 5 6 6 6 10 10 10 12 12 13 14 16 19 19 20 21 22 25 LCS_GDT T 325 T 325 5 6 14 3 5 5 6 6 6 7 8 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT L 326 L 326 5 6 11 3 5 5 6 6 6 7 8 8 9 16 16 17 18 19 19 20 21 23 25 LCS_GDT V 327 V 327 5 6 10 3 5 5 6 6 8 9 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT L 328 L 328 5 6 10 3 5 5 6 6 8 9 10 12 14 16 16 17 18 19 19 20 21 23 25 LCS_GDT R 329 R 329 5 6 10 3 5 5 6 6 6 7 8 8 9 12 14 17 18 19 19 20 21 23 25 LCS_GDT T 330 T 330 3 6 10 3 3 4 4 5 6 7 8 8 9 11 13 14 16 18 18 19 20 23 24 LCS_GDT R 331 R 331 3 4 10 4 4 4 4 5 6 7 8 8 9 10 12 13 16 17 18 18 20 20 23 LCS_AVERAGE LCS_A: 6.33 ( 3.66 5.38 9.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 7 8 9 9 10 10 12 14 16 16 17 18 19 19 20 21 23 25 GDT PERCENT_AT 3.70 4.44 5.19 5.93 6.67 6.67 7.41 7.41 8.89 10.37 11.85 11.85 12.59 13.33 14.07 14.07 14.81 15.56 17.04 18.52 GDT RMS_LOCAL 0.24 0.36 1.00 1.49 1.70 1.70 1.92 1.92 2.82 3.33 3.71 3.71 3.94 4.25 4.46 4.46 4.92 6.22 6.20 6.65 GDT RMS_ALL_AT 18.67 18.66 24.18 18.83 18.75 18.75 18.75 18.75 19.95 19.95 19.89 19.89 19.82 19.72 19.72 19.72 19.61 19.24 19.35 19.31 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 279 N 279 12.859 4 0.453 0.453 13.432 0.119 0.060 LGA V 280 V 280 8.572 3 0.070 0.070 10.350 5.833 3.333 LGA V 281 V 281 2.182 3 0.077 0.077 3.983 57.738 32.993 LGA V 282 V 282 1.464 3 0.149 0.149 1.911 83.929 47.959 LGA S 283 S 283 1.675 2 0.154 0.154 3.359 69.286 46.190 LGA G 284 G 284 2.473 0 0.202 0.202 2.473 77.381 77.381 LGA S 285 S 285 1.668 2 0.029 0.029 3.319 69.286 46.190 LGA G 286 G 286 0.954 0 0.211 0.211 3.087 78.095 78.095 LGA K 287 K 287 2.201 5 0.129 0.129 2.201 77.381 34.392 LGA F 288 F 288 3.007 7 0.056 0.056 3.860 53.810 19.567 LGA V 289 V 289 0.815 3 0.283 0.283 3.631 76.429 43.673 LGA S 290 S 290 1.673 2 0.661 0.661 4.879 60.357 40.238 LGA K 291 K 291 8.703 5 0.228 0.228 11.741 6.190 2.751 LGA G 292 G 292 9.369 0 0.608 0.608 10.773 1.548 1.548 LGA E 293 E 293 14.024 5 0.037 0.037 17.263 0.000 0.000 LGA K 294 K 294 18.650 5 0.069 0.069 20.571 0.000 0.000 LGA N 295 N 295 24.823 4 0.373 0.373 26.133 0.000 0.000 LGA S 296 S 296 23.439 2 0.296 0.296 25.315 0.000 0.000 LGA L 297 L 297 26.170 4 0.046 0.046 27.667 0.000 0.000 LGA G 298 G 298 29.811 0 0.512 0.512 32.886 0.000 0.000 LGA G 299 G 299 34.480 0 0.128 0.128 35.582 0.000 0.000 LGA K 300 K 300 32.363 5 0.114 0.114 32.522 0.000 0.000 LGA D 301 D 301 28.446 4 0.120 0.120 30.473 0.000 0.000 LGA R 302 R 302 22.666 7 0.108 0.108 24.224 0.000 0.000 LGA N 303 N 303 18.879 4 0.078 0.078 20.254 0.000 0.000 LGA A 304 A 304 11.682 1 0.559 0.559 14.549 0.000 0.000 LGA I 305 I 305 11.328 4 0.661 0.661 11.328 0.000 0.000 LGA Y 306 Y 306 12.431 8 0.548 0.548 12.751 0.000 0.000 LGA L 307 L 307 8.807 4 0.601 0.601 10.930 1.071 0.536 LGA D 308 D 308 12.651 4 0.588 0.588 16.175 0.000 0.000 LGA Y 309 Y 309 16.063 8 0.589 0.589 17.968 0.000 0.000 LGA T 310 T 310 17.591 3 0.621 0.621 18.515 0.000 0.000 LGA V 311 V 311 18.428 3 0.607 0.607 22.381 0.000 0.000 LGA N 312 N 312 23.215 4 0.207 0.207 25.164 0.000 0.000 LGA L 313 L 313 24.525 4 0.119 0.119 26.502 0.000 0.000 LGA T 314 T 314 30.594 3 0.599 0.599 33.240 0.000 0.000 LGA D 315 D 315 31.210 4 0.061 0.061 33.608 0.000 0.000 LGA N 316 N 316 32.435 4 0.144 0.144 34.342 0.000 0.000 LGA N 317 N 317 35.184 4 0.305 0.305 35.184 0.000 0.000 LGA I 318 I 318 29.401 4 0.081 0.081 31.047 0.000 0.000 LGA Q 319 Q 319 26.001 5 0.050 0.050 27.492 0.000 0.000 LGA L 320 L 320 18.552 4 0.026 0.026 21.181 0.000 0.000 LGA A 321 A 321 15.123 1 0.126 0.126 16.517 0.000 0.000 LGA T 322 T 322 9.251 3 0.150 0.150 11.193 1.429 0.816 LGA K 323 K 323 8.308 5 0.538 0.538 11.420 2.500 1.111 LGA D 324 D 324 11.330 4 0.623 0.623 11.330 0.119 0.060 LGA T 325 T 325 9.967 3 0.048 0.048 10.064 0.595 0.340 LGA L 326 L 326 11.465 4 0.031 0.031 13.096 0.000 0.000 LGA V 327 V 327 11.436 3 0.147 0.147 11.836 0.000 0.000 LGA L 328 L 328 14.019 4 0.249 0.249 14.888 0.000 0.000 LGA R 329 R 329 13.550 7 0.313 0.313 17.131 0.000 0.000 LGA T 330 T 330 20.217 3 0.665 0.665 21.167 0.000 0.000 LGA R 331 R 331 23.180 7 0.639 0.639 23.180 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 397 212 53.40 135 SUMMARY(RMSD_GDC): 15.812 15.667 15.667 5.356 3.535 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 135 4.0 10 1.92 7.963 7.625 0.495 LGA_LOCAL RMSD: 1.920 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.747 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 15.812 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.647963 * X + -0.251354 * Y + -0.719003 * Z + 18.369724 Y_new = 0.725243 * X + 0.492047 * Y + 0.481573 * Z + 38.174286 Z_new = 0.232738 * X + -0.833493 * Y + 0.501121 * Z + 7.551816 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.841616 -0.234892 -1.029473 [DEG: 48.2210 -13.4583 -58.9844 ] ZXZ: -2.160951 1.045902 2.869297 [DEG: -123.8133 59.9258 164.3986 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0571AL396_1-D2 REMARK 2: T0571-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0571AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 135 4.0 10 1.92 7.625 15.81 REMARK ---------------------------------------------------------- MOLECULE T0571AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1ryj_A ATOM 1 N ASN 279 16.112 57.707 -3.309 1.00 0.00 N ATOM 2 CA ASN 279 16.861 58.974 -3.137 1.00 0.00 C ATOM 3 C ASN 279 18.330 58.655 -2.871 1.00 0.00 C ATOM 4 O ASN 279 19.156 58.689 -3.781 1.00 0.00 O ATOM 5 N VAL 280 18.649 58.326 -1.627 1.00 0.00 N ATOM 6 CA VAL 280 19.971 57.827 -1.284 1.00 0.00 C ATOM 7 C VAL 280 19.869 56.347 -0.940 1.00 0.00 C ATOM 8 O VAL 280 19.122 55.963 -0.040 1.00 0.00 O ATOM 9 N VAL 281 20.598 55.518 -1.671 1.00 0.00 N ATOM 10 CA VAL 281 20.561 54.083 -1.437 1.00 0.00 C ATOM 11 C VAL 281 21.582 53.680 -0.383 1.00 0.00 C ATOM 12 O VAL 281 22.741 54.102 -0.425 1.00 0.00 O ATOM 13 N VAL 282 21.131 52.872 0.564 1.00 0.00 N ATOM 14 CA VAL 282 21.974 52.445 1.661 1.00 0.00 C ATOM 15 C VAL 282 21.139 51.952 2.823 1.00 0.00 C ATOM 16 O VAL 282 20.518 52.748 3.529 1.00 0.00 O ATOM 17 N SER 283 21.111 50.645 3.012 1.00 0.00 N ATOM 18 CA SER 283 20.256 50.044 4.025 1.00 0.00 C ATOM 19 C SER 283 21.082 49.476 5.172 1.00 0.00 C ATOM 20 O SER 283 22.047 48.749 4.953 1.00 0.00 O ATOM 21 N GLY 284 20.706 49.818 6.390 1.00 0.00 N ATOM 22 CA GLY 284 21.343 49.251 7.565 1.00 0.00 C ATOM 23 C GLY 284 20.341 48.414 8.341 1.00 0.00 C ATOM 24 O GLY 284 19.252 48.879 8.678 1.00 0.00 O ATOM 25 N SER 285 20.709 47.175 8.608 1.00 0.00 N ATOM 26 CA SER 285 19.813 46.236 9.257 1.00 0.00 C ATOM 27 C SER 285 20.566 45.417 10.290 1.00 0.00 C ATOM 28 O SER 285 21.799 45.442 10.333 1.00 0.00 O ATOM 29 N GLY 286 19.835 44.702 11.124 1.00 0.00 N ATOM 30 CA GLY 286 20.461 43.872 12.129 1.00 0.00 C ATOM 31 C GLY 286 19.972 42.435 12.027 1.00 0.00 C ATOM 32 O GLY 286 18.774 42.175 11.898 1.00 0.00 O ATOM 33 N LYS 287 20.915 41.514 12.040 1.00 0.00 N ATOM 34 CA LYS 287 20.605 40.100 12.077 1.00 0.00 C ATOM 35 C LYS 287 20.974 39.549 13.445 1.00 0.00 C ATOM 36 O LYS 287 22.129 39.621 13.850 1.00 0.00 O ATOM 37 N PHE 288 20.000 39.024 14.165 1.00 0.00 N ATOM 38 CA PHE 288 20.255 38.514 15.502 1.00 0.00 C ATOM 39 C PHE 288 20.384 36.994 15.463 1.00 0.00 C ATOM 40 O PHE 288 19.559 36.298 14.870 1.00 0.00 O ATOM 41 N VAL 289 21.463 36.498 16.048 1.00 0.00 N ATOM 42 CA VAL 289 21.724 35.067 16.129 1.00 0.00 C ATOM 43 C VAL 289 22.335 34.749 17.499 1.00 0.00 C ATOM 44 O VAL 289 22.232 35.560 18.418 1.00 0.00 O ATOM 45 N SER 290 22.961 33.580 17.644 1.00 0.00 N ATOM 46 CA SER 290 23.641 33.213 18.891 1.00 0.00 C ATOM 47 C SER 290 24.761 34.199 19.200 1.00 0.00 C ATOM 48 O SER 290 25.122 34.415 20.356 1.00 0.00 O ATOM 49 N LYS 291 25.298 34.795 18.140 1.00 0.00 N ATOM 50 CA LYS 291 26.360 35.793 18.248 1.00 0.00 C ATOM 51 C LYS 291 25.796 37.124 18.751 1.00 0.00 C ATOM 52 O LYS 291 26.538 38.041 19.106 1.00 0.00 O ATOM 53 N GLY 292 24.474 37.207 18.810 1.00 0.00 N ATOM 54 CA GLY 292 23.816 38.426 19.224 1.00 0.00 C ATOM 55 C GLY 292 23.309 39.211 18.036 1.00 0.00 C ATOM 56 O GLY 292 23.195 38.669 16.934 1.00 0.00 O ATOM 57 N GLU 293 22.992 40.477 18.254 1.00 0.00 N ATOM 58 CA GLU 293 22.583 41.354 17.171 1.00 0.00 C ATOM 59 C GLU 293 23.791 41.794 16.362 1.00 0.00 C ATOM 60 O GLU 293 24.709 42.432 16.884 1.00 0.00 O ATOM 61 N LYS 294 23.787 41.440 15.092 1.00 0.00 N ATOM 62 CA LYS 294 24.872 41.782 14.190 1.00 0.00 C ATOM 63 C LYS 294 24.445 42.955 13.315 1.00 0.00 C ATOM 64 O LYS 294 23.432 42.880 12.621 1.00 0.00 O ATOM 65 N ASN 295 25.200 44.040 13.374 1.00 0.00 N ATOM 66 CA ASN 295 24.870 45.239 12.618 1.00 0.00 C ATOM 67 C ASN 295 25.712 45.333 11.353 1.00 0.00 C ATOM 68 O ASN 295 26.944 45.345 11.408 1.00 0.00 O ATOM 69 N SER 296 25.038 45.372 10.215 1.00 0.00 N ATOM 70 CA SER 296 25.709 45.531 8.937 1.00 0.00 C ATOM 71 C SER 296 24.856 46.379 8.002 1.00 0.00 C ATOM 72 O SER 296 23.625 46.274 7.999 1.00 0.00 O ATOM 73 N LEU 297 25.502 47.239 7.231 1.00 0.00 N ATOM 74 CA LEU 297 24.793 48.077 6.281 1.00 0.00 C ATOM 75 C LEU 297 25.300 47.837 4.864 1.00 0.00 C ATOM 76 O LEU 297 26.498 47.676 4.633 1.00 0.00 O ATOM 77 N GLY 298 24.370 47.794 3.925 1.00 0.00 N ATOM 78 CA GLY 298 24.680 47.510 2.535 1.00 0.00 C ATOM 79 C GLY 298 24.253 48.691 1.668 1.00 0.00 C ATOM 80 O GLY 298 23.131 49.186 1.793 1.00 0.00 O ATOM 81 N GLY 299 25.153 49.144 0.804 1.00 0.00 N ATOM 82 CA GLY 299 24.875 50.293 -0.041 1.00 0.00 C ATOM 83 C GLY 299 23.731 50.050 -1.007 1.00 0.00 C ATOM 84 O GLY 299 23.003 50.979 -1.362 1.00 0.00 O ATOM 85 N LYS 300 23.580 48.813 -1.448 1.00 0.00 N ATOM 86 CA LYS 300 22.503 48.456 -2.356 1.00 0.00 C ATOM 87 C LYS 300 21.431 47.652 -1.628 1.00 0.00 C ATOM 88 O LYS 300 21.728 46.629 -1.011 1.00 0.00 O ATOM 89 N ASP 301 20.175 48.124 -1.664 1.00 0.00 N ATOM 90 CA ASP 301 19.037 47.403 -1.082 1.00 0.00 C ATOM 91 C ASP 301 18.796 46.071 -1.789 1.00 0.00 C ATOM 92 O ASP 301 18.380 46.034 -2.949 1.00 0.00 O ATOM 93 N ARG 302 19.062 44.981 -1.084 1.00 0.00 N ATOM 94 CA ARG 302 19.058 43.655 -1.684 1.00 0.00 C ATOM 95 C ARG 302 18.011 42.749 -1.049 1.00 0.00 C ATOM 96 O ARG 302 17.319 43.135 -0.105 1.00 0.00 O ATOM 97 N ASN 303 17.907 41.546 -1.583 1.00 0.00 N ATOM 98 CA ASN 303 16.956 40.555 -1.117 1.00 0.00 C ATOM 99 C ASN 303 17.588 39.703 -0.016 1.00 0.00 C ATOM 100 O ASN 303 18.816 39.630 0.082 1.00 0.00 O ATOM 101 N ALA 304 16.753 39.080 0.822 1.00 0.00 N ATOM 102 CA ALA 304 17.234 38.196 1.887 1.00 0.00 C ATOM 103 C ALA 304 18.220 37.177 1.323 1.00 0.00 C ATOM 104 O ALA 304 19.311 36.989 1.864 1.00 0.00 O ATOM 105 N ILE 305 17.837 36.559 0.213 1.00 0.00 N ATOM 106 CA ILE 305 18.628 35.506 -0.412 1.00 0.00 C ATOM 107 C ILE 305 20.018 35.989 -0.813 1.00 0.00 C ATOM 108 O ILE 305 20.960 35.204 -0.833 1.00 0.00 O ATOM 109 N TYR 306 20.148 37.270 -1.129 1.00 0.00 N ATOM 110 CA TYR 306 21.437 37.817 -1.547 1.00 0.00 C ATOM 111 C TYR 306 22.438 37.745 -0.404 1.00 0.00 C ATOM 112 O TYR 306 23.456 37.063 -0.495 1.00 0.00 O ATOM 113 N LEU 307 22.128 38.437 0.684 1.00 0.00 N ATOM 114 CA LEU 307 23.005 38.470 1.846 1.00 0.00 C ATOM 115 C LEU 307 23.116 37.085 2.473 1.00 0.00 C ATOM 116 O LEU 307 24.198 36.664 2.894 1.00 0.00 O ATOM 117 N ASP 308 21.999 36.368 2.505 1.00 0.00 N ATOM 118 CA ASP 308 21.965 35.020 3.052 1.00 0.00 C ATOM 119 C ASP 308 22.855 34.092 2.231 1.00 0.00 C ATOM 120 O ASP 308 23.562 33.256 2.782 1.00 0.00 O ATOM 121 N TYR 309 22.801 34.250 0.909 1.00 0.00 N ATOM 122 CA TYR 309 23.604 33.441 0.013 1.00 0.00 C ATOM 123 C TYR 309 25.087 33.779 0.059 1.00 0.00 C ATOM 124 O TYR 309 25.932 32.894 -0.082 1.00 0.00 O ATOM 125 N THR 310 25.411 35.056 0.246 1.00 0.00 N ATOM 126 CA THR 310 26.809 35.490 0.305 1.00 0.00 C ATOM 127 C THR 310 27.521 34.902 1.519 1.00 0.00 C ATOM 128 O THR 310 28.664 34.459 1.428 1.00 0.00 O ATOM 129 N VAL 311 26.841 34.895 2.655 1.00 0.00 N ATOM 130 CA VAL 311 27.374 34.261 3.858 1.00 0.00 C ATOM 131 C VAL 311 27.025 32.778 3.856 1.00 0.00 C ATOM 132 O VAL 311 27.519 32.008 4.680 1.00 0.00 O ATOM 133 N ASN 312 26.185 32.410 2.892 1.00 0.00 N ATOM 134 CA ASN 312 25.603 31.075 2.774 1.00 0.00 C ATOM 135 C ASN 312 25.204 30.513 4.132 1.00 0.00 C ATOM 136 O ASN 312 25.842 29.600 4.662 1.00 0.00 O ATOM 137 N LEU 313 24.168 31.093 4.710 1.00 0.00 N ATOM 138 CA LEU 313 23.615 30.582 5.949 1.00 0.00 C ATOM 139 C LEU 313 22.495 29.612 5.619 1.00 0.00 C ATOM 140 O LEU 313 21.460 30.008 5.080 1.00 0.00 O ATOM 141 N THR 314 22.698 28.321 5.914 1.00 0.00 N ATOM 142 CA THR 314 21.765 27.268 5.529 1.00 0.00 C ATOM 143 C THR 314 20.377 27.462 6.126 1.00 0.00 C ATOM 144 O THR 314 20.151 27.192 7.309 1.00 0.00 O ATOM 145 N ASP 315 19.451 27.923 5.291 1.00 0.00 N ATOM 146 CA ASP 315 18.049 28.071 5.678 1.00 0.00 C ATOM 147 C ASP 315 17.448 26.689 5.957 1.00 0.00 C ATOM 148 O ASP 315 16.358 26.555 6.509 1.00 0.00 O ATOM 149 N ASN 316 18.206 25.671 5.573 1.00 0.00 N ATOM 150 CA ASN 316 17.823 24.278 5.742 1.00 0.00 C ATOM 151 C ASN 316 17.758 23.889 7.225 1.00 0.00 C ATOM 152 O ASN 316 17.021 22.979 7.604 1.00 0.00 O ATOM 153 N ASN 317 18.529 24.582 8.059 1.00 0.00 N ATOM 154 CA ASN 317 18.625 24.228 9.472 1.00 0.00 C ATOM 155 C ASN 317 18.307 25.417 10.384 1.00 0.00 C ATOM 156 O ASN 317 18.195 25.258 11.603 1.00 0.00 O ATOM 157 N ILE 318 18.154 26.604 9.809 1.00 0.00 N ATOM 158 CA ILE 318 17.911 27.794 10.616 1.00 0.00 C ATOM 159 C ILE 318 16.591 28.454 10.220 1.00 0.00 C ATOM 160 O ILE 318 16.158 28.358 9.070 1.00 0.00 O ATOM 161 N GLN 319 15.943 29.100 11.182 1.00 0.00 N ATOM 162 CA GLN 319 14.669 29.763 10.936 1.00 0.00 C ATOM 163 C GLN 319 14.877 31.258 10.718 1.00 0.00 C ATOM 164 O GLN 319 15.563 31.917 11.498 1.00 0.00 O ATOM 165 N LEU 320 14.290 31.786 9.653 1.00 0.00 N ATOM 166 CA LEU 320 14.426 33.197 9.331 1.00 0.00 C ATOM 167 C LEU 320 13.163 33.965 9.714 1.00 0.00 C ATOM 168 O LEU 320 12.053 33.605 9.317 1.00 0.00 O ATOM 169 N ALA 321 13.346 35.020 10.490 1.00 0.00 N ATOM 170 CA ALA 321 12.241 35.852 10.940 1.00 0.00 C ATOM 171 C ALA 321 12.483 37.315 10.591 1.00 0.00 C ATOM 172 O ALA 321 13.604 37.808 10.679 1.00 0.00 O ATOM 173 N THR 322 11.430 37.993 10.181 1.00 0.00 N ATOM 174 CA THR 322 11.458 39.431 9.991 1.00 0.00 C ATOM 175 C THR 322 10.688 40.106 11.108 1.00 0.00 C ATOM 176 O THR 322 9.454 40.091 11.113 1.00 0.00 O ATOM 177 N LYS 323 11.421 40.654 12.072 1.00 0.00 N ATOM 178 CA LYS 323 10.833 41.370 13.207 1.00 0.00 C ATOM 179 C LYS 323 9.909 40.452 14.023 1.00 0.00 C ATOM 180 O LYS 323 9.126 40.913 14.855 1.00 0.00 O ATOM 181 N ASP 324 10.019 39.148 13.790 1.00 0.00 N ATOM 182 CA ASP 324 9.194 38.192 14.504 1.00 0.00 C ATOM 183 C ASP 324 8.446 37.251 13.576 1.00 0.00 C ATOM 184 O ASP 324 8.193 36.096 13.923 1.00 0.00 O ATOM 185 N THR 325 8.112 37.724 12.382 1.00 0.00 N ATOM 186 CA THR 325 7.317 36.930 11.448 1.00 0.00 C ATOM 187 C THR 325 8.215 36.029 10.611 1.00 0.00 C ATOM 188 O THR 325 9.239 36.468 10.102 1.00 0.00 O ATOM 189 N LEU 326 7.828 34.769 10.475 1.00 0.00 N ATOM 190 CA LEU 326 8.631 33.802 9.744 1.00 0.00 C ATOM 191 C LEU 326 8.498 34.051 8.247 1.00 0.00 C ATOM 192 O LEU 326 7.400 33.985 7.691 1.00 0.00 O ATOM 193 N VAL 327 9.612 34.353 7.605 1.00 0.00 N ATOM 194 CA VAL 327 9.612 34.663 6.187 1.00 0.00 C ATOM 195 C VAL 327 10.530 33.721 5.431 1.00 0.00 C ATOM 196 O VAL 327 11.328 32.996 6.027 1.00 0.00 O ATOM 197 N LEU 328 10.406 33.729 4.116 1.00 0.00 N ATOM 198 CA LEU 328 11.299 32.965 3.269 1.00 0.00 C ATOM 199 C LEU 328 12.401 33.867 2.732 1.00 0.00 C ATOM 200 O LEU 328 12.379 35.084 2.944 1.00 0.00 O ATOM 201 N ARG 329 13.342 33.278 2.018 1.00 0.00 N ATOM 202 CA ARG 329 14.512 33.998 1.531 1.00 0.00 C ATOM 203 C ARG 329 14.197 34.767 0.249 1.00 0.00 C ATOM 204 O ARG 329 15.095 35.271 -0.425 1.00 0.00 O ATOM 205 N THR 330 12.916 34.885 -0.061 1.00 0.00 N ATOM 206 CA THR 330 12.485 35.558 -1.276 1.00 0.00 C ATOM 207 C THR 330 12.187 37.032 -1.001 1.00 0.00 C ATOM 208 O THR 330 12.113 37.846 -1.922 1.00 0.00 O ATOM 209 N ARG 331 12.043 37.375 0.272 1.00 0.00 N ATOM 210 CA ARG 331 11.711 38.741 0.662 1.00 0.00 C ATOM 211 C ARG 331 12.933 39.650 0.581 1.00 0.00 C ATOM 212 O ARG 331 14.067 39.176 0.571 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 212 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 82.71 41.3 104 38.8 268 ARMSMC SECONDARY STRUCTURE . . 84.25 38.2 76 42.2 180 ARMSMC SURFACE . . . . . . . . 89.07 40.0 60 36.6 164 ARMSMC BURIED . . . . . . . . 73.13 43.2 44 42.3 104 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 117 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 105 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 82 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 71 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 54 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.81 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.81 53 39.3 135 CRMSCA CRN = ALL/NP . . . . . 0.2983 CRMSCA SECONDARY STRUCTURE . . 15.58 38 42.2 90 CRMSCA SURFACE . . . . . . . . 16.18 31 37.3 83 CRMSCA BURIED . . . . . . . . 15.28 22 42.3 52 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.67 212 31.9 664 CRMSMC SECONDARY STRUCTURE . . 15.43 152 34.2 445 CRMSMC SURFACE . . . . . . . . 16.03 124 30.4 408 CRMSMC BURIED . . . . . . . . 15.15 88 34.4 256 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 496 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 410 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 341 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 293 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 203 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.67 212 20.5 1036 CRMSALL SECONDARY STRUCTURE . . 15.43 152 21.7 701 CRMSALL SURFACE . . . . . . . . 16.03 124 19.8 625 CRMSALL BURIED . . . . . . . . 15.15 88 21.4 411 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.635 1.000 0.500 53 39.3 135 ERRCA SECONDARY STRUCTURE . . 14.758 1.000 0.500 38 42.2 90 ERRCA SURFACE . . . . . . . . 15.068 1.000 0.500 31 37.3 83 ERRCA BURIED . . . . . . . . 14.025 1.000 0.500 22 42.3 52 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.530 1.000 0.500 212 31.9 664 ERRMC SECONDARY STRUCTURE . . 14.626 1.000 0.500 152 34.2 445 ERRMC SURFACE . . . . . . . . 14.956 1.000 0.500 124 30.4 408 ERRMC BURIED . . . . . . . . 13.930 1.000 0.500 88 34.4 256 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 496 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 410 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 341 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 293 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 203 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.530 1.000 0.500 212 20.5 1036 ERRALL SECONDARY STRUCTURE . . 14.626 1.000 0.500 152 21.7 701 ERRALL SURFACE . . . . . . . . 14.956 1.000 0.500 124 19.8 625 ERRALL BURIED . . . . . . . . 13.930 1.000 0.500 88 21.4 411 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 9 53 135 DISTCA CA (P) 0.00 0.00 0.00 0.00 6.67 135 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.47 DISTCA ALL (N) 0 0 0 0 36 212 1036 DISTALL ALL (P) 0.00 0.00 0.00 0.00 3.47 1036 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.46 DISTALL END of the results output