####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 78 ( 378), selected 78 , name T0569TS373_1-D1 # Molecule2: number of CA atoms 78 ( 1097), selected 78 , name T0569-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0569TS373_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 8 - 42 4.98 12.48 LCS_AVERAGE: 35.08 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 16 - 27 1.86 13.79 LONGEST_CONTINUOUS_SEGMENT: 12 28 - 39 1.91 13.96 LONGEST_CONTINUOUS_SEGMENT: 12 29 - 40 1.92 14.03 LCS_AVERAGE: 11.39 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 21 - 27 0.97 14.28 LONGEST_CONTINUOUS_SEGMENT: 7 30 - 36 0.97 13.64 LONGEST_CONTINUOUS_SEGMENT: 7 31 - 37 0.75 13.99 LONGEST_CONTINUOUS_SEGMENT: 7 33 - 39 0.93 14.21 LONGEST_CONTINUOUS_SEGMENT: 7 71 - 77 0.80 11.25 LONGEST_CONTINUOUS_SEGMENT: 7 72 - 78 1.00 11.46 LONGEST_CONTINUOUS_SEGMENT: 7 73 - 79 0.76 11.91 LCS_AVERAGE: 6.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 78 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 2 D 2 6 7 23 3 5 6 7 8 9 14 17 20 22 25 27 32 34 37 40 43 44 48 52 LCS_GDT E 3 E 3 6 7 23 3 5 6 7 8 9 14 17 20 22 25 27 32 34 37 40 43 47 48 52 LCS_GDT D 4 D 4 6 7 23 4 5 6 7 9 12 17 19 20 24 26 28 32 34 38 40 44 47 51 53 LCS_GDT A 5 A 5 6 7 23 4 5 6 7 11 12 14 17 20 24 26 28 32 34 37 40 44 47 51 53 LCS_GDT T 6 T 6 6 7 23 4 5 6 7 13 15 17 19 22 24 26 28 32 34 38 42 45 47 51 53 LCS_GDT I 7 I 7 6 7 34 4 4 7 8 11 15 17 19 22 24 26 28 32 34 38 42 45 47 51 53 LCS_GDT T 8 T 8 5 7 35 3 3 6 10 12 15 17 20 22 26 28 34 38 41 43 45 49 50 51 53 LCS_GDT Y 9 Y 9 5 8 35 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT V 10 V 10 5 8 35 4 5 5 10 15 17 20 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT D 11 D 11 5 8 35 4 6 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT D 12 D 12 5 8 35 4 5 8 8 10 13 19 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT D 13 D 13 5 8 35 3 6 8 8 11 17 20 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT K 14 K 14 4 8 35 3 6 8 8 10 17 20 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT G 15 G 15 4 8 35 1 4 5 7 9 12 15 19 22 26 28 31 36 41 43 45 49 50 51 53 LCS_GDT G 16 G 16 3 12 35 0 4 8 9 11 12 15 19 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT A 17 A 17 3 12 35 1 3 3 6 10 13 18 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT Q 18 Q 18 3 12 35 0 6 8 9 11 12 15 21 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT V 19 V 19 3 12 35 3 6 8 10 11 17 20 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT G 20 G 20 5 12 35 3 6 7 10 11 17 20 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT D 21 D 21 7 12 35 3 5 7 10 11 12 16 23 26 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT I 22 I 22 7 12 35 3 5 6 10 11 13 14 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT V 23 V 23 7 12 35 3 5 7 10 11 14 16 19 23 27 29 32 38 41 43 45 49 50 51 53 LCS_GDT T 24 T 24 7 12 35 3 5 7 10 11 13 16 19 23 27 29 31 36 39 42 45 49 50 51 53 LCS_GDT V 25 V 25 7 12 35 3 5 7 10 12 16 16 17 20 21 26 31 33 38 42 43 49 50 51 52 LCS_GDT T 26 T 26 7 12 35 3 5 7 10 12 16 16 18 21 25 29 31 33 38 42 43 49 50 51 52 LCS_GDT G 27 G 27 7 12 35 3 5 7 10 11 16 16 17 18 20 25 31 33 35 36 42 45 50 51 52 LCS_GDT K 28 K 28 4 12 35 3 3 6 9 12 16 16 19 23 27 29 31 34 38 42 45 49 50 51 52 LCS_GDT T 29 T 29 4 12 35 3 3 7 9 12 16 16 19 23 27 29 31 34 38 42 45 49 50 51 52 LCS_GDT D 30 D 30 7 12 35 3 4 7 9 12 16 16 19 23 27 29 32 36 39 42 45 49 50 51 52 LCS_GDT D 31 D 31 7 12 35 3 6 8 9 12 16 16 19 23 27 29 32 36 39 42 45 49 50 51 52 LCS_GDT S 32 S 32 7 12 35 4 6 8 9 12 16 16 19 23 27 29 32 37 39 42 45 49 50 51 52 LCS_GDT T 33 T 33 7 12 35 4 6 8 9 12 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT T 34 T 34 7 12 35 4 6 8 9 11 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT Y 35 Y 35 7 12 35 4 6 8 9 12 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT T 36 T 36 7 12 35 4 6 8 9 12 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT V 37 V 37 7 12 35 4 6 8 9 11 16 16 18 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT T 38 T 38 7 12 35 4 5 7 9 12 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT I 39 I 39 7 12 35 4 5 8 9 11 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT P 40 P 40 5 12 35 3 5 7 10 12 16 16 19 23 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT D 41 D 41 3 7 35 3 3 7 9 13 15 18 20 22 24 28 34 38 41 43 45 49 50 51 53 LCS_GDT G 42 G 42 6 7 35 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT Y 43 Y 43 6 7 27 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT E 44 E 44 6 7 26 4 6 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT Y 45 Y 45 6 7 23 4 5 7 11 15 16 18 20 22 27 28 33 38 40 43 44 49 50 51 53 LCS_GDT V 46 V 46 6 7 19 4 5 7 9 13 16 18 20 22 24 27 28 35 38 41 44 46 49 51 53 LCS_GDT G 47 G 47 6 7 19 3 4 6 9 10 12 15 20 22 24 27 28 34 35 39 42 45 49 51 53 LCS_GDT T 48 T 48 3 7 19 3 3 4 5 6 8 9 12 18 21 23 29 33 38 40 44 47 50 51 53 LCS_GDT D 49 D 49 3 4 19 3 3 4 4 6 11 12 18 19 24 27 30 35 38 42 45 49 50 51 53 LCS_GDT G 50 G 50 3 4 18 3 3 4 5 6 11 14 19 23 27 29 32 36 39 42 45 49 50 51 53 LCS_GDT G 51 G 51 3 4 18 3 3 4 4 5 6 12 16 21 27 29 34 38 41 43 45 49 50 51 53 LCS_GDT V 52 V 52 4 5 18 3 4 4 6 7 9 12 15 21 25 28 34 38 41 43 45 49 50 51 53 LCS_GDT V 53 V 53 4 5 22 3 4 5 7 10 17 20 23 26 27 28 34 37 41 43 44 46 49 51 53 LCS_GDT S 54 S 54 4 5 22 3 4 4 6 7 12 17 22 26 27 28 31 35 39 42 44 46 49 51 53 LCS_GDT S 55 S 55 4 6 22 3 4 4 6 7 8 10 12 15 23 23 25 28 36 41 44 46 49 49 53 LCS_GDT D 56 D 56 4 6 22 3 4 4 6 6 8 10 13 14 16 18 21 22 25 30 34 37 43 45 47 LCS_GDT G 57 G 57 4 8 22 3 4 6 7 9 11 14 16 16 16 18 21 22 24 26 29 37 39 41 44 LCS_GDT K 58 K 58 4 8 22 3 4 6 7 8 10 13 16 16 16 18 24 26 29 32 34 41 43 45 46 LCS_GDT T 59 T 59 5 8 22 3 4 6 7 9 11 14 16 19 23 27 29 32 38 41 44 46 49 51 53 LCS_GDT V 60 V 60 5 8 22 4 4 6 10 14 16 18 20 22 24 27 31 35 39 41 44 46 49 51 53 LCS_GDT T 61 T 61 5 8 22 4 4 6 7 9 11 14 16 16 16 27 28 35 38 41 44 46 49 50 53 LCS_GDT I 62 I 62 5 8 22 4 4 6 7 9 11 14 16 16 16 18 22 35 38 41 44 46 49 50 53 LCS_GDT T 63 T 63 5 8 22 4 4 6 7 9 11 14 16 16 16 18 20 23 27 30 33 35 40 46 50 LCS_GDT F 64 F 64 5 8 22 3 4 6 7 9 11 14 16 16 16 18 20 23 27 30 33 35 41 46 50 LCS_GDT A 65 A 65 4 8 22 3 4 5 7 7 11 14 16 16 16 18 20 22 24 25 28 32 36 41 46 LCS_GDT A 66 A 66 5 8 22 3 4 6 7 7 11 14 16 16 16 18 20 22 24 25 28 34 37 41 46 LCS_GDT D 67 D 67 5 8 22 3 4 6 7 7 11 14 16 16 16 18 20 22 24 26 33 34 36 41 47 LCS_GDT D 68 D 68 5 8 22 3 4 6 7 7 11 14 16 16 16 18 20 23 31 34 41 46 49 49 52 LCS_GDT S 69 S 69 5 8 22 3 4 6 7 7 9 13 16 17 24 27 32 35 40 43 44 46 49 51 53 LCS_GDT D 70 D 70 5 8 22 3 4 6 7 9 11 14 16 19 25 28 34 38 41 43 44 46 49 51 53 LCS_GDT N 71 N 71 7 9 22 4 6 8 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT V 72 V 72 7 9 22 4 5 10 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT V 73 V 73 7 9 22 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT I 74 I 74 7 9 22 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT H 75 H 75 7 9 22 3 9 11 14 15 16 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT L 76 L 76 7 9 12 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT K 77 K 77 7 9 12 4 8 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT H 78 H 78 7 9 12 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_GDT G 79 G 79 7 9 12 4 9 11 14 15 17 20 23 26 27 28 34 38 41 43 45 49 50 51 53 LCS_AVERAGE LCS_A: 17.81 ( 6.97 11.39 35.08 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 9 11 14 15 17 20 23 26 27 29 34 38 41 43 45 49 50 51 53 GDT PERCENT_AT 5.13 11.54 14.10 17.95 19.23 21.79 25.64 29.49 33.33 34.62 37.18 43.59 48.72 52.56 55.13 57.69 62.82 64.10 65.38 67.95 GDT RMS_LOCAL 0.21 0.82 0.91 1.33 1.48 2.33 2.50 2.86 3.16 3.26 4.00 4.63 4.90 5.16 5.33 5.43 5.74 5.82 5.92 6.49 GDT RMS_ALL_AT 18.71 11.68 11.78 11.47 11.58 11.28 11.27 11.28 11.30 11.27 12.56 10.45 10.69 10.52 10.41 11.88 11.78 11.81 11.75 10.28 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 2 D 2 17.249 3 0.040 0.074 18.226 0.000 0.000 LGA E 3 E 3 16.009 4 0.147 0.224 16.371 0.000 0.000 LGA D 4 D 4 14.066 3 0.223 0.323 14.610 0.000 0.000 LGA A 5 A 5 12.869 0 0.044 0.079 13.233 0.000 0.000 LGA T 6 T 6 11.386 2 0.102 0.142 11.883 0.000 0.000 LGA I 7 I 7 10.207 3 0.204 0.226 11.255 2.381 1.190 LGA T 8 T 8 5.833 2 0.113 0.115 7.449 27.976 18.435 LGA Y 9 Y 9 2.948 7 0.618 0.565 5.007 45.952 18.929 LGA V 10 V 10 2.447 2 0.057 0.090 4.211 75.119 48.231 LGA D 11 D 11 2.540 3 0.173 0.181 4.953 61.429 34.643 LGA D 12 D 12 3.767 3 0.604 0.545 6.239 54.048 29.167 LGA D 13 D 13 1.971 3 0.067 0.068 2.597 66.905 42.560 LGA K 14 K 14 2.726 4 0.476 0.466 3.952 50.238 27.884 LGA G 15 G 15 6.645 0 0.663 0.663 6.645 23.095 23.095 LGA G 16 G 16 5.408 0 0.665 0.665 6.132 27.976 27.976 LGA A 17 A 17 3.870 0 0.590 0.536 5.598 37.500 34.286 LGA Q 18 Q 18 5.267 4 0.590 0.536 6.598 35.952 17.460 LGA V 19 V 19 3.051 2 0.602 0.544 5.005 40.714 31.429 LGA G 20 G 20 3.261 0 0.123 0.123 3.261 65.595 65.595 LGA D 21 D 21 4.452 3 0.178 0.268 5.910 32.024 18.690 LGA I 22 I 22 6.399 3 0.059 0.067 7.174 14.643 9.464 LGA V 23 V 23 8.634 2 0.169 0.181 9.041 4.405 2.721 LGA T 24 T 24 10.340 2 0.084 0.083 12.920 0.119 0.068 LGA V 25 V 25 12.234 2 0.162 0.236 12.459 0.000 0.000 LGA T 26 T 26 14.752 2 0.195 0.271 16.620 0.000 0.000 LGA G 27 G 27 17.551 0 0.642 0.642 19.669 0.000 0.000 LGA K 28 K 28 18.603 4 0.169 0.243 19.389 0.000 0.000 LGA T 29 T 29 21.880 2 0.041 0.054 23.510 0.000 0.000 LGA D 30 D 30 20.789 3 0.613 0.561 21.076 0.000 0.000 LGA D 31 D 31 18.953 3 0.417 0.434 20.012 0.000 0.000 LGA S 32 S 32 16.397 1 0.095 0.143 17.376 0.000 0.000 LGA T 33 T 33 13.965 2 0.158 0.229 14.550 0.000 0.000 LGA T 34 T 34 13.000 2 0.027 0.065 14.129 0.000 0.000 LGA Y 35 Y 35 10.426 7 0.052 0.048 11.139 0.000 0.119 LGA T 36 T 36 11.009 2 0.011 0.046 11.499 0.000 0.000 LGA V 37 V 37 10.421 2 0.028 0.049 10.646 0.000 0.000 LGA T 38 T 38 10.643 2 0.050 0.077 11.038 0.000 0.000 LGA I 39 I 39 10.365 3 0.119 0.118 10.658 0.000 0.000 LGA P 40 P 40 10.604 2 0.619 0.590 11.000 0.119 0.068 LGA D 41 D 41 9.388 3 0.580 0.533 10.831 8.333 4.167 LGA G 42 G 42 3.402 0 0.497 0.497 5.687 46.429 46.429 LGA Y 43 Y 43 2.086 7 0.032 0.051 2.719 60.952 25.714 LGA E 44 E 44 2.978 4 0.051 0.054 4.272 50.595 28.042 LGA Y 45 Y 45 5.744 7 0.095 0.092 6.713 19.881 7.738 LGA V 46 V 46 8.205 2 0.573 0.596 11.017 4.048 2.721 LGA G 47 G 47 10.437 0 0.239 0.239 10.437 0.476 0.476 LGA T 48 T 48 11.800 2 0.628 0.572 12.657 0.000 0.000 LGA D 49 D 49 14.762 3 0.660 0.605 15.424 0.000 0.000 LGA G 50 G 50 14.275 0 0.133 0.133 14.469 0.000 0.000 LGA G 51 G 51 9.229 0 0.141 0.141 11.401 8.214 8.214 LGA V 52 V 52 6.453 2 0.585 0.541 9.041 22.619 13.129 LGA V 53 V 53 3.226 2 0.148 0.219 6.370 37.143 26.531 LGA S 54 S 54 5.405 1 0.192 0.272 8.787 17.738 18.016 LGA S 55 S 55 12.790 1 0.660 0.603 14.867 0.000 0.000 LGA D 56 D 56 14.869 3 0.664 0.596 17.444 0.000 0.000 LGA G 57 G 57 16.083 0 0.216 0.216 16.107 0.000 0.000 LGA K 58 K 58 14.282 4 0.593 0.531 15.284 0.000 0.000 LGA T 59 T 59 10.538 2 0.121 0.190 12.714 0.000 0.000 LGA V 60 V 60 8.913 2 0.039 0.069 9.924 1.905 2.993 LGA T 61 T 61 13.619 2 0.051 0.058 15.796 0.000 0.000 LGA I 62 I 62 13.424 3 0.084 0.128 16.758 0.000 0.000 LGA T 63 T 63 18.979 2 0.631 0.582 21.026 0.000 0.000 LGA F 64 F 64 18.691 6 0.016 0.036 18.977 0.000 0.000 LGA A 65 A 65 19.409 0 0.110 0.154 19.892 0.000 0.000 LGA A 66 A 66 20.169 0 0.167 0.179 23.155 0.000 0.000 LGA D 67 D 67 19.923 3 0.176 0.184 22.098 0.000 0.000 LGA D 68 D 68 13.717 3 0.614 0.611 16.154 0.000 0.000 LGA S 69 S 69 8.878 1 0.044 0.048 10.600 9.762 8.175 LGA D 70 D 70 7.040 3 0.155 0.146 9.124 16.905 8.631 LGA N 71 N 71 1.488 3 0.492 0.449 2.663 73.214 43.750 LGA V 72 V 72 0.884 2 0.016 0.053 2.404 77.381 54.626 LGA V 73 V 73 2.916 2 0.036 0.068 4.179 61.071 40.204 LGA I 74 I 74 2.039 3 0.058 0.058 2.938 60.952 40.655 LGA H 75 H 75 3.391 5 0.141 0.178 4.088 55.357 25.857 LGA L 76 L 76 2.412 3 0.065 0.081 2.859 59.048 37.619 LGA K 77 K 77 3.325 4 0.101 0.174 3.959 59.286 31.164 LGA H 78 H 78 2.493 5 0.048 0.048 3.589 64.881 30.286 LGA G 79 G 79 1.236 2 - - 1.330 40.714 40.714 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 78 312 310 99.36 569 378 66.43 78 SUMMARY(RMSD_GDC): 10.103 10.020 10.143 19.527 12.793 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 78 78 4.0 23 2.86 29.167 24.586 0.777 LGA_LOCAL RMSD: 2.862 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.276 Number of assigned atoms: 78 Std_ASGN_ATOMS RMSD: 10.103 Standard rmsd on all 78 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.531752 * X + -0.678443 * Y + 0.506907 * Z + 2.615674 Y_new = 0.502710 * X + -0.228832 * Y + -0.833618 * Z + -2.230914 Z_new = 0.681558 * X + 0.698105 * Y + 0.219379 * Z + -0.724976 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.757331 -0.749890 1.266319 [DEG: 43.3919 -42.9655 72.5548 ] ZXZ: 0.546340 1.349619 0.773405 [DEG: 31.3030 77.3275 44.3129 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0569TS373_1-D1 REMARK 2: T0569-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0569TS373_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 78 78 4.0 23 2.86 24.586 10.10 REMARK ---------------------------------------------------------- MOLECULE T0569TS373_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0569 REMARK MODEL 1 REMARK PARENT N/A ATOM 2 N ASP 2 -6.057 9.616 15.165 1.00 0.00 N ATOM 2 CA ASP 2 -5.452 8.942 14.003 1.00 0.00 C ATOM 2 C ASP 2 -4.448 7.909 14.524 1.00 0.00 C ATOM 2 O ASP 2 -3.536 8.215 15.303 1.00 0.00 O ATOM 2 CB ASP 2 -4.676 9.992 13.187 1.00 0.00 C ATOM 3 N GLU 3 -4.646 6.686 14.069 1.00 0.00 N ATOM 3 CA GLU 3 -3.798 5.541 14.441 1.00 0.00 C ATOM 3 C GLU 3 -2.593 5.526 13.495 1.00 0.00 C ATOM 3 O GLU 3 -2.703 5.229 12.300 1.00 0.00 O ATOM 3 CB GLU 3 -4.607 4.253 14.216 1.00 0.00 C ATOM 4 N ASP 4 -1.450 5.854 14.069 1.00 0.00 N ATOM 4 CA ASP 4 -0.170 5.903 13.344 1.00 0.00 C ATOM 4 C ASP 4 0.449 4.503 13.406 1.00 0.00 C ATOM 4 O ASP 4 0.888 4.027 14.459 1.00 0.00 O ATOM 4 CB ASP 4 0.776 6.875 14.067 1.00 0.00 C ATOM 5 N ALA 5 0.469 3.869 12.249 1.00 0.00 N ATOM 5 CA ALA 5 1.018 2.512 12.082 1.00 0.00 C ATOM 5 C ALA 5 2.155 2.576 11.059 1.00 0.00 C ATOM 5 O ALA 5 1.948 2.824 9.864 1.00 0.00 O ATOM 5 CB ALA 5 -0.099 1.624 11.507 1.00 0.00 C ATOM 6 N THR 6 3.352 2.346 11.564 1.00 0.00 N ATOM 6 CA THR 6 4.584 2.358 10.757 1.00 0.00 C ATOM 6 C THR 6 4.835 0.923 10.288 1.00 0.00 C ATOM 6 O THR 6 5.361 0.076 11.020 1.00 0.00 O ATOM 6 CB THR 6 5.759 2.786 11.651 1.00 0.00 C ATOM 7 N ILE 7 4.443 0.683 9.051 1.00 0.00 N ATOM 7 CA ILE 7 4.590 -0.629 8.400 1.00 0.00 C ATOM 7 C ILE 7 5.076 -0.389 6.967 1.00 0.00 C ATOM 7 O ILE 7 4.687 0.576 6.296 1.00 0.00 O ATOM 7 CB ILE 7 3.197 -1.282 8.343 1.00 0.00 C ATOM 8 N THR 8 5.933 -1.291 6.527 1.00 0.00 N ATOM 8 CA THR 8 6.525 -1.251 5.179 1.00 0.00 C ATOM 8 C THR 8 5.400 -1.603 4.200 1.00 0.00 C ATOM 8 O THR 8 4.628 -2.548 4.401 1.00 0.00 O ATOM 8 CB THR 8 7.611 -2.331 5.085 1.00 0.00 C ATOM 9 N TYR 9 5.339 -0.815 3.143 1.00 0.00 N ATOM 9 CA TYR 9 4.337 -0.975 2.077 1.00 0.00 C ATOM 9 C TYR 9 4.471 -2.411 1.566 1.00 0.00 C ATOM 9 O TYR 9 3.500 -3.047 1.129 1.00 0.00 O ATOM 9 CB TYR 9 4.664 -0.018 0.916 1.00 0.00 C ATOM 10 N VAL 10 5.698 -2.892 1.635 1.00 0.00 N ATOM 10 CA VAL 10 6.051 -4.250 1.196 1.00 0.00 C ATOM 10 C VAL 10 6.967 -4.819 2.283 1.00 0.00 C ATOM 10 O VAL 10 7.871 -4.147 2.797 1.00 0.00 O ATOM 10 CB VAL 10 6.804 -4.158 -0.144 1.00 0.00 C ATOM 11 N ASP 11 6.703 -6.071 2.609 1.00 0.00 N ATOM 11 CA ASP 11 7.461 -6.812 3.629 1.00 0.00 C ATOM 11 C ASP 11 8.877 -7.102 3.121 1.00 0.00 C ATOM 11 O ASP 11 9.092 -7.496 1.966 1.00 0.00 O ATOM 11 CB ASP 11 6.756 -8.158 3.863 1.00 0.00 C ATOM 12 N ASP 12 9.826 -6.895 4.014 1.00 0.00 N ATOM 12 CA ASP 12 11.256 -7.112 3.736 1.00 0.00 C ATOM 12 C ASP 12 11.753 -8.261 4.620 1.00 0.00 C ATOM 12 O ASP 12 11.858 -8.144 5.846 1.00 0.00 O ATOM 12 CB ASP 12 12.025 -5.850 4.166 1.00 0.00 C ATOM 13 N ASP 13 12.053 -9.363 3.960 1.00 0.00 N ATOM 13 CA ASP 13 12.549 -10.587 4.614 1.00 0.00 C ATOM 13 C ASP 13 14.044 -10.363 4.841 1.00 0.00 C ATOM 13 O ASP 13 14.630 -10.801 5.842 1.00 0.00 O ATOM 13 CB ASP 13 12.361 -11.766 3.644 1.00 0.00 C ATOM 14 N LYS 14 14.635 -9.672 3.884 1.00 0.00 N ATOM 14 CA LYS 14 16.067 -9.343 3.901 1.00 0.00 C ATOM 14 C LYS 14 16.226 -7.934 3.326 1.00 0.00 C ATOM 14 O LYS 14 15.596 -7.558 2.327 1.00 0.00 O ATOM 14 CB LYS 14 16.820 -10.334 2.995 1.00 0.00 C ATOM 15 N GLY 15 17.082 -7.176 3.987 1.00 0.00 N ATOM 15 CA GLY 15 17.386 -5.789 3.604 1.00 0.00 C ATOM 15 C GLY 15 16.279 -4.862 4.113 1.00 0.00 C ATOM 15 O GLY 15 15.701 -5.059 5.192 1.00 0.00 O ATOM 16 N GLY 16 16.007 -3.856 3.304 1.00 0.00 N ATOM 16 CA GLY 16 14.979 -2.847 3.597 1.00 0.00 C ATOM 16 C GLY 16 14.319 -2.398 2.290 1.00 0.00 C ATOM 16 O GLY 16 13.933 -3.210 1.437 1.00 0.00 O ATOM 17 N ALA 17 14.205 -1.090 2.164 1.00 0.00 N ATOM 17 CA ALA 17 13.601 -0.445 0.986 1.00 0.00 C ATOM 17 C ALA 17 14.410 -0.883 -0.237 1.00 0.00 C ATOM 17 O ALA 17 14.106 -0.530 -1.385 1.00 0.00 O ATOM 17 CB ALA 17 13.740 1.080 1.139 1.00 0.00 C ATOM 18 N GLN 18 15.440 -1.658 0.046 1.00 0.00 N ATOM 18 CA GLN 18 16.350 -2.192 -0.980 1.00 0.00 C ATOM 18 C GLN 18 15.526 -2.933 -2.038 1.00 0.00 C ATOM 18 O GLN 18 16.044 -3.412 -3.055 1.00 0.00 O ATOM 18 CB GLN 18 17.280 -3.203 -0.292 1.00 0.00 C ATOM 19 N VAL 19 14.238 -3.011 -1.766 1.00 0.00 N ATOM 19 CA VAL 19 13.266 -3.679 -2.649 1.00 0.00 C ATOM 19 C VAL 19 13.271 -2.964 -4.002 1.00 0.00 C ATOM 19 O VAL 19 12.964 -3.546 -5.053 1.00 0.00 O ATOM 19 CB VAL 19 11.859 -3.508 -2.050 1.00 0.00 C ATOM 20 N GLY 20 13.630 -1.697 -3.939 1.00 0.00 N ATOM 20 CA GLY 20 13.704 -0.824 -5.121 1.00 0.00 C ATOM 20 C GLY 20 12.296 -0.305 -5.424 1.00 0.00 C ATOM 20 O GLY 20 11.885 0.776 -4.981 1.00 0.00 O ATOM 21 N ASP 21 11.581 -1.107 -6.190 1.00 0.00 N ATOM 21 CA ASP 21 10.203 -0.803 -6.605 1.00 0.00 C ATOM 21 C ASP 21 9.270 -1.488 -5.602 1.00 0.00 C ATOM 21 O ASP 21 9.336 -2.703 -5.370 1.00 0.00 O ATOM 21 CB ASP 21 9.973 -1.406 -8.003 1.00 0.00 C ATOM 22 N ILE 22 8.409 -0.674 -5.022 1.00 0.00 N ATOM 22 CA ILE 22 7.423 -1.122 -4.028 1.00 0.00 C ATOM 22 C ILE 22 6.052 -1.318 -4.682 1.00 0.00 C ATOM 22 O ILE 22 5.661 -0.600 -5.612 1.00 0.00 O ATOM 22 CB ILE 22 7.280 -0.024 -2.959 1.00 0.00 C ATOM 23 N VAL 23 5.345 -2.307 -4.169 1.00 0.00 N ATOM 23 CA VAL 23 4.001 -2.668 -4.649 1.00 0.00 C ATOM 23 C VAL 23 2.961 -1.647 -4.173 1.00 0.00 C ATOM 23 O VAL 23 3.016 -1.130 -3.051 1.00 0.00 O ATOM 23 CB VAL 23 3.659 -4.010 -3.977 1.00 0.00 C ATOM 24 N THR 24 2.021 -1.378 -5.060 1.00 0.00 N ATOM 24 CA THR 24 0.925 -0.426 -4.810 1.00 0.00 C ATOM 24 C THR 24 -0.347 -1.237 -4.540 1.00 0.00 C ATOM 24 O THR 24 -0.773 -2.073 -5.347 1.00 0.00 O ATOM 24 CB THR 24 0.689 0.386 -6.095 1.00 0.00 C ATOM 25 N VAL 25 -0.929 -0.963 -3.389 1.00 0.00 N ATOM 25 CA VAL 25 -2.161 -1.627 -2.931 1.00 0.00 C ATOM 25 C VAL 25 -3.339 -0.751 -3.368 1.00 0.00 C ATOM 25 O VAL 25 -3.640 0.287 -2.769 1.00 0.00 O ATOM 25 CB VAL 25 -2.143 -1.683 -1.395 1.00 0.00 C ATOM 26 N THR 26 -3.987 -1.205 -4.426 1.00 0.00 N ATOM 26 CA THR 26 -5.148 -0.520 -5.013 1.00 0.00 C ATOM 26 C THR 26 -6.314 -1.510 -4.996 1.00 0.00 C ATOM 26 O THR 26 -6.351 -2.491 -5.752 1.00 0.00 O ATOM 26 CB THR 26 -4.849 -0.157 -6.479 1.00 0.00 C ATOM 27 N GLY 27 -7.254 -1.222 -4.116 1.00 0.00 N ATOM 27 CA GLY 27 -8.462 -2.041 -3.934 1.00 0.00 C ATOM 27 C GLY 27 -9.446 -1.723 -5.061 1.00 0.00 C ATOM 27 O GLY 27 -10.662 -1.930 -4.949 1.00 0.00 O ATOM 28 N LYS 28 -8.883 -1.217 -6.142 1.00 0.00 N ATOM 28 CA LYS 28 -9.643 -0.841 -7.344 1.00 0.00 C ATOM 28 C LYS 28 -9.687 -2.050 -8.283 1.00 0.00 C ATOM 28 O LYS 28 -8.661 -2.528 -8.783 1.00 0.00 O ATOM 28 CB LYS 28 -8.874 0.286 -8.056 1.00 0.00 C ATOM 29 N THR 29 -10.900 -2.523 -8.499 1.00 0.00 N ATOM 29 CA THR 29 -11.169 -3.680 -9.369 1.00 0.00 C ATOM 29 C THR 29 -11.370 -3.217 -10.815 1.00 0.00 C ATOM 29 O THR 29 -11.147 -3.963 -11.779 1.00 0.00 O ATOM 29 CB THR 29 -12.479 -4.329 -8.891 1.00 0.00 C ATOM 30 N ASP 30 -11.793 -1.973 -10.929 1.00 0.00 N ATOM 30 CA ASP 30 -12.051 -1.327 -12.227 1.00 0.00 C ATOM 30 C ASP 30 -10.721 -0.832 -12.804 1.00 0.00 C ATOM 30 O ASP 30 -10.100 0.114 -12.303 1.00 0.00 O ATOM 30 CB ASP 30 -12.941 -0.099 -11.982 1.00 0.00 C ATOM 31 N ASP 31 -10.312 -1.499 -13.866 1.00 0.00 N ATOM 31 CA ASP 31 -9.061 -1.190 -14.579 1.00 0.00 C ATOM 31 C ASP 31 -7.915 -1.512 -13.615 1.00 0.00 C ATOM 31 O ASP 31 -6.947 -0.753 -13.468 1.00 0.00 O ATOM 31 CB ASP 31 -9.027 0.317 -14.898 1.00 0.00 C ATOM 32 N SER 32 -8.058 -2.656 -12.972 1.00 0.00 N ATOM 32 CA SER 32 -7.074 -3.159 -12.000 1.00 0.00 C ATOM 32 C SER 32 -5.717 -3.325 -12.690 1.00 0.00 C ATOM 32 O SER 32 -5.546 -4.129 -13.617 1.00 0.00 O ATOM 32 CB SER 32 -7.545 -4.550 -11.542 1.00 0.00 C ATOM 33 N THR 33 -4.768 -2.544 -12.211 1.00 0.00 N ATOM 33 CA THR 33 -3.389 -2.542 -12.729 1.00 0.00 C ATOM 33 C THR 33 -2.523 -3.235 -11.673 1.00 0.00 C ATOM 33 O THR 33 -2.341 -2.747 -10.552 1.00 0.00 O ATOM 33 CB THR 33 -2.926 -1.080 -12.858 1.00 0.00 C ATOM 34 N THR 34 -2.001 -4.381 -12.068 1.00 0.00 N ATOM 34 CA THR 34 -1.137 -5.212 -11.213 1.00 0.00 C ATOM 34 C THR 34 0.318 -4.751 -11.351 1.00 0.00 C ATOM 34 O THR 34 0.962 -4.918 -12.395 1.00 0.00 O ATOM 34 CB THR 34 -1.236 -6.659 -11.724 1.00 0.00 C ATOM 35 N TYR 35 0.805 -4.171 -10.271 1.00 0.00 N ATOM 35 CA TYR 35 2.182 -3.653 -10.187 1.00 0.00 C ATOM 35 C TYR 35 3.011 -4.774 -9.551 1.00 0.00 C ATOM 35 O TYR 35 2.687 -5.303 -8.481 1.00 0.00 O ATOM 35 CB TYR 35 2.210 -2.433 -9.250 1.00 0.00 C ATOM 36 N THR 36 4.082 -5.115 -10.243 1.00 0.00 N ATOM 36 CA THR 36 5.017 -6.169 -9.815 1.00 0.00 C ATOM 36 C THR 36 6.377 -5.566 -9.453 1.00 0.00 C ATOM 36 O THR 36 6.966 -4.778 -10.206 1.00 0.00 O ATOM 36 CB THR 36 5.195 -7.103 -11.024 1.00 0.00 C ATOM 37 N VAL 37 6.850 -5.960 -8.286 1.00 0.00 N ATOM 37 CA VAL 37 8.141 -5.502 -7.745 1.00 0.00 C ATOM 37 C VAL 37 9.048 -6.733 -7.640 1.00 0.00 C ATOM 37 O VAL 37 8.671 -7.781 -7.102 1.00 0.00 O ATOM 37 CB VAL 37 7.932 -4.963 -6.319 1.00 0.00 C ATOM 38 N THR 38 10.247 -6.572 -8.170 1.00 0.00 N ATOM 38 CA THR 38 11.275 -7.628 -8.179 1.00 0.00 C ATOM 38 C THR 38 12.254 -7.311 -7.047 1.00 0.00 C ATOM 38 O THR 38 13.097 -6.410 -7.143 1.00 0.00 O ATOM 38 CB THR 38 12.020 -7.574 -9.521 1.00 0.00 C ATOM 39 N ILE 39 12.116 -8.079 -5.982 1.00 0.00 N ATOM 39 CA ILE 39 12.954 -7.946 -4.780 1.00 0.00 C ATOM 39 C ILE 39 13.888 -9.160 -4.736 1.00 0.00 C ATOM 39 O ILE 39 13.473 -10.312 -4.906 1.00 0.00 O ATOM 39 CB ILE 39 12.057 -8.004 -3.532 1.00 0.00 C ATOM 40 N PRO 40 15.153 -8.861 -4.504 1.00 0.00 N ATOM 40 CA PRO 40 16.218 -9.875 -4.422 1.00 0.00 C ATOM 40 C PRO 40 15.730 -10.963 -3.461 1.00 0.00 C ATOM 40 O PRO 40 16.155 -12.126 -3.518 1.00 0.00 O ATOM 40 CB PRO 40 17.454 -9.210 -3.795 1.00 0.00 C ATOM 41 N ASP 41 14.832 -10.548 -2.588 1.00 0.00 N ATOM 41 CA ASP 41 14.230 -11.430 -1.575 1.00 0.00 C ATOM 41 C ASP 41 12.953 -12.044 -2.149 1.00 0.00 C ATOM 41 O ASP 41 12.590 -13.194 -1.863 1.00 0.00 O ATOM 41 CB ASP 41 13.834 -10.538 -0.384 1.00 0.00 C ATOM 42 N GLY 42 12.291 -11.243 -2.964 1.00 0.00 N ATOM 42 CA GLY 42 11.039 -11.632 -3.627 1.00 0.00 C ATOM 42 C GLY 42 9.834 -11.093 -2.850 1.00 0.00 C ATOM 42 O GLY 42 9.518 -11.537 -1.739 1.00 0.00 O ATOM 43 N TYR 43 9.181 -10.128 -3.471 1.00 0.00 N ATOM 43 CA TYR 43 7.995 -9.469 -2.905 1.00 0.00 C ATOM 43 C TYR 43 6.793 -9.844 -3.779 1.00 0.00 C ATOM 43 O TYR 43 6.874 -9.906 -5.012 1.00 0.00 O ATOM 43 CB TYR 43 8.181 -7.942 -2.976 1.00 0.00 C ATOM 44 N GLU 44 5.688 -10.089 -3.101 1.00 0.00 N ATOM 44 CA GLU 44 4.418 -10.468 -3.743 1.00 0.00 C ATOM 44 C GLU 44 3.581 -9.198 -3.919 1.00 0.00 C ATOM 44 O GLU 44 3.480 -8.350 -3.023 1.00 0.00 O ATOM 44 CB GLU 44 3.669 -11.425 -2.800 1.00 0.00 C ATOM 45 N TYR 45 2.993 -9.101 -5.096 1.00 0.00 N ATOM 45 CA TYR 45 2.142 -7.963 -5.477 1.00 0.00 C ATOM 45 C TYR 45 0.759 -8.157 -4.847 1.00 0.00 C ATOM 45 O TYR 45 0.152 -9.234 -4.916 1.00 0.00 O ATOM 45 CB TYR 45 1.986 -7.961 -7.007 1.00 0.00 C ATOM 46 N VAL 46 0.287 -7.085 -4.240 1.00 0.00 N ATOM 46 CA VAL 46 -1.023 -7.052 -3.570 1.00 0.00 C ATOM 46 C VAL 46 -2.049 -6.447 -4.533 1.00 0.00 C ATOM 46 O VAL 46 -1.818 -5.409 -5.170 1.00 0.00 O ATOM 46 CB VAL 46 -0.902 -6.116 -2.354 1.00 0.00 C ATOM 47 N GLY 47 -3.175 -7.127 -4.615 1.00 0.00 N ATOM 47 CA GLY 47 -4.294 -6.725 -5.481 1.00 0.00 C ATOM 47 C GLY 47 -5.607 -7.117 -4.799 1.00 0.00 C ATOM 47 O GLY 47 -5.919 -6.687 -3.680 1.00 0.00 O ATOM 48 N THR 48 -6.357 -7.942 -5.505 1.00 0.00 N ATOM 48 CA THR 48 -7.657 -8.446 -5.039 1.00 0.00 C ATOM 48 C THR 48 -7.416 -9.696 -4.187 1.00 0.00 C ATOM 48 O THR 48 -8.341 -10.293 -3.624 1.00 0.00 O ATOM 48 CB THR 48 -8.480 -8.837 -6.278 1.00 0.00 C ATOM 49 N ASP 49 -6.151 -10.064 -4.116 1.00 0.00 N ATOM 49 CA ASP 49 -5.697 -11.238 -3.353 1.00 0.00 C ATOM 49 C ASP 49 -6.177 -11.092 -1.906 1.00 0.00 C ATOM 49 O ASP 49 -6.058 -12.008 -1.080 1.00 0.00 O ATOM 49 CB ASP 49 -4.159 -11.258 -3.345 1.00 0.00 C ATOM 50 N GLY 50 -6.718 -9.920 -1.633 1.00 0.00 N ATOM 50 CA GLY 50 -7.245 -9.568 -0.307 1.00 0.00 C ATOM 50 C GLY 50 -7.735 -8.120 -0.321 1.00 0.00 C ATOM 50 O GLY 50 -8.786 -7.787 -0.889 1.00 0.00 O ATOM 51 N GLY 51 -6.943 -7.280 0.319 1.00 0.00 N ATOM 51 CA GLY 51 -7.223 -5.842 0.427 1.00 0.00 C ATOM 51 C GLY 51 -7.083 -5.425 1.895 1.00 0.00 C ATOM 51 O GLY 51 -8.063 -5.322 2.645 1.00 0.00 O ATOM 52 N VAL 52 -5.840 -5.191 2.272 1.00 0.00 N ATOM 52 CA VAL 52 -5.479 -4.779 3.637 1.00 0.00 C ATOM 52 C VAL 52 -5.734 -3.278 3.800 1.00 0.00 C ATOM 52 O VAL 52 -6.187 -2.799 4.849 1.00 0.00 O ATOM 52 CB VAL 52 -3.963 -4.998 3.793 1.00 0.00 C ATOM 53 N VAL 53 -5.431 -2.562 2.733 1.00 0.00 N ATOM 53 CA VAL 53 -5.598 -1.102 2.673 1.00 0.00 C ATOM 53 C VAL 53 -6.204 -0.791 1.303 1.00 0.00 C ATOM 53 O VAL 53 -5.533 -0.841 0.263 1.00 0.00 O ATOM 53 CB VAL 53 -4.204 -0.456 2.770 1.00 0.00 C ATOM 54 N SER 54 -7.484 -0.473 1.339 1.00 0.00 N ATOM 54 CA SER 54 -8.263 -0.139 0.136 1.00 0.00 C ATOM 54 C SER 54 -8.484 1.375 0.109 1.00 0.00 C ATOM 54 O SER 54 -9.165 1.954 0.966 1.00 0.00 O ATOM 54 CB SER 54 -9.634 -0.829 0.241 1.00 0.00 C ATOM 55 N SER 55 -7.891 1.990 -0.897 1.00 0.00 N ATOM 55 CA SER 55 -7.973 3.443 -1.114 1.00 0.00 C ATOM 55 C SER 55 -8.863 3.679 -2.337 1.00 0.00 C ATOM 55 O SER 55 -8.705 3.051 -3.393 1.00 0.00 O ATOM 55 CB SER 55 -6.557 3.962 -1.420 1.00 0.00 C ATOM 56 N ASP 56 -9.794 4.597 -2.160 1.00 0.00 N ATOM 56 CA ASP 56 -10.757 4.980 -3.206 1.00 0.00 C ATOM 56 C ASP 56 -10.140 6.059 -4.100 1.00 0.00 C ATOM 56 O ASP 56 -9.515 7.021 -3.632 1.00 0.00 O ATOM 56 CB ASP 56 -11.988 5.587 -2.514 1.00 0.00 C ATOM 57 N GLY 57 -10.337 5.866 -5.390 1.00 0.00 N ATOM 57 CA GLY 57 -9.830 6.781 -6.426 1.00 0.00 C ATOM 57 C GLY 57 -8.509 7.416 -5.981 1.00 0.00 C ATOM 57 O GLY 57 -8.088 8.471 -6.477 1.00 0.00 O ATOM 58 N LYS 58 -7.878 6.741 -5.039 1.00 0.00 N ATOM 58 CA LYS 58 -6.592 7.172 -4.468 1.00 0.00 C ATOM 58 C LYS 58 -5.518 6.175 -4.913 1.00 0.00 C ATOM 58 O LYS 58 -5.507 5.002 -4.516 1.00 0.00 O ATOM 58 CB LYS 58 -6.713 7.110 -2.934 1.00 0.00 C ATOM 59 N THR 59 -4.626 6.678 -5.745 1.00 0.00 N ATOM 59 CA THR 59 -3.509 5.893 -6.298 1.00 0.00 C ATOM 59 C THR 59 -2.374 5.932 -5.269 1.00 0.00 C ATOM 59 O THR 59 -1.897 6.997 -4.860 1.00 0.00 O ATOM 59 CB THR 59 -3.035 6.577 -7.591 1.00 0.00 C ATOM 60 N VAL 60 -1.962 4.742 -4.872 1.00 0.00 N ATOM 60 CA VAL 60 -0.882 4.549 -3.889 1.00 0.00 C ATOM 60 C VAL 60 0.454 4.419 -4.628 1.00 0.00 C ATOM 60 O VAL 60 0.726 3.430 -5.320 1.00 0.00 O ATOM 60 CB VAL 60 -1.166 3.230 -3.152 1.00 0.00 C ATOM 61 N THR 61 1.269 5.443 -4.460 1.00 0.00 N ATOM 61 CA THR 61 2.603 5.523 -5.080 1.00 0.00 C ATOM 61 C THR 61 3.632 5.847 -3.991 1.00 0.00 C ATOM 61 O THR 61 3.657 6.942 -3.419 1.00 0.00 O ATOM 61 CB THR 61 2.604 6.693 -6.081 1.00 0.00 C ATOM 62 N ILE 62 4.471 4.863 -3.730 1.00 0.00 N ATOM 62 CA ILE 62 5.540 4.960 -2.721 1.00 0.00 C ATOM 62 C ILE 62 6.858 4.485 -3.336 1.00 0.00 C ATOM 62 O ILE 62 6.939 3.431 -3.981 1.00 0.00 O ATOM 62 CB ILE 62 5.177 4.017 -1.561 1.00 0.00 C ATOM 63 N THR 63 7.879 5.293 -3.117 1.00 0.00 N ATOM 63 CA THR 63 9.237 5.028 -3.618 1.00 0.00 C ATOM 63 C THR 63 10.091 4.276 -2.593 1.00 0.00 C ATOM 63 O THR 63 10.953 3.455 -2.934 1.00 0.00 O ATOM 63 CB THR 63 9.918 6.385 -3.866 1.00 0.00 C ATOM 64 N PHE 64 9.824 4.583 -1.337 1.00 0.00 N ATOM 64 CA PHE 64 10.526 3.978 -0.195 1.00 0.00 C ATOM 64 C PHE 64 9.539 3.238 0.712 1.00 0.00 C ATOM 64 O PHE 64 8.427 3.705 0.991 1.00 0.00 O ATOM 64 CB PHE 64 11.149 5.117 0.630 1.00 0.00 C ATOM 65 N ALA 65 9.981 2.076 1.157 1.00 0.00 N ATOM 65 CA ALA 65 9.195 1.201 2.041 1.00 0.00 C ATOM 65 C ALA 65 9.952 1.111 3.370 1.00 0.00 C ATOM 65 O ALA 65 10.998 0.460 3.484 1.00 0.00 O ATOM 65 CB ALA 65 9.130 -0.205 1.420 1.00 0.00 C ATOM 66 N ALA 66 9.391 1.781 4.360 1.00 0.00 N ATOM 66 CA ALA 66 9.952 1.828 5.720 1.00 0.00 C ATOM 66 C ALA 66 10.654 3.175 5.908 1.00 0.00 C ATOM 66 O ALA 66 10.408 3.913 6.869 1.00 0.00 O ATOM 66 CB ALA 66 11.018 0.721 5.842 1.00 0.00 C ATOM 67 N ASP 67 11.530 3.462 4.964 1.00 0.00 N ATOM 67 CA ASP 67 12.318 4.704 4.950 1.00 0.00 C ATOM 67 C ASP 67 11.334 5.876 4.898 1.00 0.00 C ATOM 67 O ASP 67 11.617 6.992 5.357 1.00 0.00 O ATOM 67 CB ASP 67 13.158 4.728 3.661 1.00 0.00 C ATOM 68 N ASP 68 10.181 5.586 4.326 1.00 0.00 N ATOM 68 CA ASP 68 9.093 6.564 4.170 1.00 0.00 C ATOM 68 C ASP 68 7.877 6.005 4.913 1.00 0.00 C ATOM 68 O ASP 68 7.540 4.817 4.818 1.00 0.00 O ATOM 68 CB ASP 68 8.758 6.668 2.672 1.00 0.00 C ATOM 69 N SER 69 7.238 6.896 5.649 1.00 0.00 N ATOM 69 CA SER 69 6.044 6.572 6.443 1.00 0.00 C ATOM 69 C SER 69 4.886 6.356 5.466 1.00 0.00 C ATOM 69 O SER 69 4.327 7.299 4.890 1.00 0.00 O ATOM 69 CB SER 69 5.692 7.777 7.333 1.00 0.00 C ATOM 70 N ASP 70 4.550 5.090 5.300 1.00 0.00 N ATOM 70 CA ASP 70 3.465 4.657 4.405 1.00 0.00 C ATOM 70 C ASP 70 2.315 4.184 5.301 1.00 0.00 C ATOM 70 O ASP 70 2.410 3.173 6.008 1.00 0.00 O ATOM 70 CB ASP 70 3.947 3.461 3.565 1.00 0.00 C ATOM 71 N ASN 71 1.238 4.944 5.247 1.00 0.00 N ATOM 71 CA ASN 71 0.020 4.672 6.026 1.00 0.00 C ATOM 71 C ASN 71 -0.595 3.411 5.414 1.00 0.00 C ATOM 71 O ASN 71 -1.583 2.854 5.912 1.00 0.00 O ATOM 71 CB ASN 71 -0.953 5.842 5.838 1.00 0.00 C ATOM 72 N VAL 72 0.017 2.987 4.325 1.00 0.00 N ATOM 72 CA VAL 72 -0.408 1.794 3.576 1.00 0.00 C ATOM 72 C VAL 72 0.181 0.526 4.206 1.00 0.00 C ATOM 72 O VAL 72 1.401 0.326 4.256 1.00 0.00 O ATOM 72 CB VAL 72 0.180 1.910 2.159 1.00 0.00 C ATOM 73 N VAL 73 -0.720 -0.312 4.679 1.00 0.00 N ATOM 73 CA VAL 73 -0.373 -1.590 5.324 1.00 0.00 C ATOM 73 C VAL 73 -0.685 -2.698 4.315 1.00 0.00 C ATOM 73 O VAL 73 -1.843 -3.073 4.090 1.00 0.00 O ATOM 73 CB VAL 73 -1.282 -1.793 6.547 1.00 0.00 C ATOM 74 N ILE 74 0.380 -3.203 3.721 1.00 0.00 N ATOM 74 CA ILE 74 0.308 -4.277 2.718 1.00 0.00 C ATOM 74 C ILE 74 1.127 -5.470 3.213 1.00 0.00 C ATOM 74 O ILE 74 2.339 -5.378 3.459 1.00 0.00 O ATOM 74 CB ILE 74 0.937 -3.790 1.400 1.00 0.00 C ATOM 75 N HIS 75 0.430 -6.583 3.348 1.00 0.00 N ATOM 75 CA HIS 75 1.021 -7.848 3.810 1.00 0.00 C ATOM 75 C HIS 75 1.402 -8.627 2.550 1.00 0.00 C ATOM 75 O HIS 75 0.565 -9.258 1.889 1.00 0.00 O ATOM 75 CB HIS 75 -0.054 -8.640 4.574 1.00 0.00 C ATOM 76 N LEU 76 2.685 -8.561 2.242 1.00 0.00 N ATOM 76 CA LEU 76 3.266 -9.236 1.072 1.00 0.00 C ATOM 76 C LEU 76 4.125 -10.384 1.609 1.00 0.00 C ATOM 76 O LEU 76 5.084 -10.187 2.366 1.00 0.00 O ATOM 76 CB LEU 76 4.138 -8.233 0.295 1.00 0.00 C ATOM 77 N LYS 77 3.750 -11.578 1.193 1.00 0.00 N ATOM 77 CA LYS 77 4.436 -12.820 1.586 1.00 0.00 C ATOM 77 C LYS 77 5.769 -12.984 0.846 1.00 0.00 C ATOM 77 O LYS 77 5.922 -12.603 -0.321 1.00 0.00 O ATOM 77 CB LYS 77 3.536 -13.995 1.168 1.00 0.00 C ATOM 78 N HIS 78 6.717 -13.559 1.562 1.00 0.00 N ATOM 78 CA HIS 78 8.074 -13.813 1.045 1.00 0.00 C ATOM 78 C HIS 78 8.017 -14.978 0.052 1.00 0.00 C ATOM 78 O HIS 78 7.356 -16.000 0.278 1.00 0.00 O ATOM 78 CB HIS 78 8.930 -14.276 2.237 1.00 0.00 C ATOM 79 N GLY 79 8.729 -14.788 -1.042 1.00 0.00 N ATOM 79 CA GLY 79 8.815 -15.780 -2.127 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 378 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.60 49.0 153 99.4 154 ARMSMC SECONDARY STRUCTURE . . 57.36 60.2 88 100.0 88 ARMSMC SURFACE . . . . . . . . 76.50 46.7 107 99.1 108 ARMSMC BURIED . . . . . . . . 49.97 54.3 46 100.0 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 64 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.10 (Number of atoms: 78) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.10 78 100.0 78 CRMSCA CRN = ALL/NP . . . . . 0.1295 CRMSCA SECONDARY STRUCTURE . . 8.71 44 100.0 44 CRMSCA SURFACE . . . . . . . . 10.47 55 100.0 55 CRMSCA BURIED . . . . . . . . 9.17 23 100.0 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.14 378 99.5 380 CRMSMC SECONDARY STRUCTURE . . 8.81 217 100.0 217 CRMSMC SURFACE . . . . . . . . 10.58 265 99.3 267 CRMSMC BURIED . . . . . . . . 9.05 113 100.0 113 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.69 68 8.7 785 CRMSSC RELIABLE SIDE CHAINS . 10.69 68 9.1 749 CRMSSC SECONDARY STRUCTURE . . 8.95 41 8.4 490 CRMSSC SURFACE . . . . . . . . 11.46 47 8.9 526 CRMSSC BURIED . . . . . . . . 8.72 21 8.1 259 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.14 378 34.5 1097 CRMSALL SECONDARY STRUCTURE . . 8.81 217 32.6 666 CRMSALL SURFACE . . . . . . . . 10.58 265 35.5 746 CRMSALL BURIED . . . . . . . . 9.05 113 32.2 351 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.087 1.000 0.500 78 100.0 78 ERRCA SECONDARY STRUCTURE . . 8.065 1.000 0.500 44 100.0 44 ERRCA SURFACE . . . . . . . . 9.484 1.000 0.500 55 100.0 55 ERRCA BURIED . . . . . . . . 8.138 1.000 0.500 23 100.0 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.113 1.000 0.500 378 99.5 380 ERRMC SECONDARY STRUCTURE . . 8.122 1.000 0.500 217 100.0 217 ERRMC SURFACE . . . . . . . . 9.576 1.000 0.500 265 99.3 267 ERRMC BURIED . . . . . . . . 8.026 1.000 0.500 113 100.0 113 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.596 1.000 0.500 68 8.7 785 ERRSC RELIABLE SIDE CHAINS . 9.596 1.000 0.500 68 9.1 749 ERRSC SECONDARY STRUCTURE . . 8.286 1.000 0.500 41 8.4 490 ERRSC SURFACE . . . . . . . . 10.379 1.000 0.500 47 8.9 526 ERRSC BURIED . . . . . . . . 7.844 1.000 0.500 21 8.1 259 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.113 1.000 0.500 378 34.5 1097 ERRALL SECONDARY STRUCTURE . . 8.122 1.000 0.500 217 32.6 666 ERRALL SURFACE . . . . . . . . 9.576 1.000 0.500 265 35.5 746 ERRALL BURIED . . . . . . . . 8.026 1.000 0.500 113 32.2 351 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 12 51 78 78 DISTCA CA (P) 0.00 0.00 2.56 15.38 65.38 78 DISTCA CA (RMS) 0.00 0.00 2.78 4.24 6.56 DISTCA ALL (N) 0 0 8 59 242 378 1097 DISTALL ALL (P) 0.00 0.00 0.73 5.38 22.06 1097 DISTALL ALL (RMS) 0.00 0.00 2.75 4.16 6.43 DISTALL END of the results output