####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 141), selected 20 , name T0569TS301_1-D1 # Molecule2: number of CA atoms 78 ( 1097), selected 20 , name T0569-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0569TS301_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 2.09 2.09 LCS_AVERAGE: 25.64 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 2 - 18 1.67 2.21 LCS_AVERAGE: 19.29 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.68 2.24 LCS_AVERAGE: 13.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 2 D 2 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT E 3 E 3 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT D 4 D 4 14 17 20 8 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT A 5 A 5 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT T 6 T 6 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT I 7 I 7 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT T 8 T 8 14 17 20 6 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT Y 9 Y 9 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT V 10 V 10 14 17 20 6 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT D 11 D 11 14 17 20 8 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT D 12 D 12 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT D 13 D 13 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT K 14 K 14 14 17 20 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT G 15 G 15 14 17 20 4 5 8 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT G 16 G 16 5 17 20 3 4 7 7 16 17 17 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT A 17 A 17 5 17 20 3 4 7 7 10 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT Q 18 Q 18 3 17 20 3 3 3 3 5 13 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT V 19 V 19 3 4 20 3 4 4 4 10 12 16 18 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT G 20 G 20 3 4 20 3 4 6 8 12 16 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_GDT D 21 D 21 3 4 20 3 7 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 LCS_AVERAGE LCS_A: 19.64 ( 13.97 19.29 25.64 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 13 14 15 16 17 18 19 20 20 20 20 20 20 20 20 20 20 20 20 GDT PERCENT_AT 11.54 16.67 17.95 19.23 20.51 21.79 23.08 24.36 25.64 25.64 25.64 25.64 25.64 25.64 25.64 25.64 25.64 25.64 25.64 25.64 GDT RMS_LOCAL 0.34 0.47 0.64 0.81 1.13 1.37 1.67 1.84 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 GDT RMS_ALL_AT 2.15 2.18 2.15 2.19 2.28 2.29 2.11 2.12 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 2.09 # Checking swapping # possible swapping detected: Y 9 Y 9 # possible swapping detected: D 11 D 11 # possible swapping detected: D 12 D 12 # possible swapping detected: D 13 D 13 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 2 D 2 0.666 0 0.641 1.392 5.783 79.881 56.071 LGA E 3 E 3 0.837 0 0.066 1.155 3.990 88.214 79.312 LGA D 4 D 4 0.590 0 0.103 0.943 3.767 92.857 81.369 LGA A 5 A 5 0.715 0 0.117 0.142 1.307 88.214 88.667 LGA T 6 T 6 0.414 0 0.041 0.049 0.777 95.238 93.197 LGA I 7 I 7 0.519 0 0.124 0.751 3.069 92.857 87.798 LGA T 8 T 8 0.715 0 0.051 0.079 1.306 90.476 86.599 LGA Y 9 Y 9 0.580 0 0.022 0.086 2.049 95.238 83.254 LGA V 10 V 10 0.915 0 0.068 1.112 2.764 90.476 81.905 LGA D 11 D 11 0.737 0 0.078 0.370 0.907 90.476 91.667 LGA D 12 D 12 0.595 0 0.080 0.835 3.969 90.476 75.714 LGA D 13 D 13 0.448 0 0.044 0.978 3.274 95.238 82.619 LGA K 14 K 14 0.449 0 0.210 0.990 3.044 97.619 84.339 LGA G 15 G 15 2.414 0 0.183 0.183 2.414 66.786 66.786 LGA G 16 G 16 3.533 0 0.074 0.074 4.532 45.476 45.476 LGA A 17 A 17 3.459 0 0.015 0.017 4.574 43.929 46.571 LGA Q 18 Q 18 3.708 0 0.069 0.875 6.852 45.000 31.058 LGA V 19 V 19 5.037 0 0.096 0.120 8.424 31.667 20.884 LGA G 20 G 20 3.554 0 0.400 0.400 3.985 58.214 58.214 LGA D 21 D 21 1.525 4 - - 2.756 34.405 33.452 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 78 97.50 145 141 97.24 78 SUMMARY(RMSD_GDC): 2.093 2.103 2.610 19.394 17.628 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 78 4.0 19 1.84 21.474 21.535 0.979 LGA_LOCAL RMSD: 1.841 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.119 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 2.093 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.729250 * X + -0.503120 * Y + 0.463751 * Z + 0.677519 Y_new = -0.637978 * X + 0.254955 * Y + -0.726623 * Z + -0.271427 Z_new = 0.247343 * X + -0.825753 * Y + -0.506905 * Z + 0.678704 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.422852 -0.249937 -2.121352 [DEG: -138.8192 -14.3204 -121.5445 ] ZXZ: 0.568055 2.102387 2.850561 [DEG: 32.5471 120.4579 163.3251 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0569TS301_1-D1 REMARK 2: T0569-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0569TS301_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 78 4.0 19 1.84 21.535 2.09 REMARK ---------------------------------------------------------- MOLECULE T0569TS301_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0569 REMARK MODEL 1 REMARK PARENT N/A ATOM 9 N ASP 2 -5.203 19.233 -0.871 1.00999.00 N ATOM 10 CA ASP 2 -4.418 19.713 0.288 1.00999.00 C ATOM 11 CB ASP 2 -5.161 20.840 1.009 1.00999.00 C ATOM 12 CG ASP 2 -6.471 20.379 1.615 1.00999.00 C ATOM 13 OD1 ASP 2 -6.795 19.179 1.488 1.00999.00 O ATOM 14 OD2 ASP 2 -7.174 21.217 2.218 1.00999.00 O ATOM 15 O ASP 2 -3.391 18.919 2.340 1.00999.00 O ATOM 16 C ASP 2 -4.062 18.635 1.341 1.00999.00 C ATOM 17 N GLU 3 -4.489 17.397 1.121 1.00999.00 N ATOM 18 CA GLU 3 -4.125 16.289 2.012 1.00999.00 C ATOM 19 CB GLU 3 -5.372 15.514 2.441 1.00999.00 C ATOM 20 CG GLU 3 -6.353 16.327 3.270 1.00999.00 C ATOM 21 CD GLU 3 -7.566 15.522 3.691 1.00999.00 C ATOM 22 OE1 GLU 3 -7.466 14.278 3.747 1.00999.00 O ATOM 23 OE2 GLU 3 -8.620 16.137 3.965 1.00999.00 O ATOM 24 O GLU 3 -3.100 15.388 0.042 1.00999.00 O ATOM 25 C GLU 3 -3.127 15.392 1.271 1.00999.00 C ATOM 26 N ASP 4 -2.345 14.622 2.014 1.00999.00 N ATOM 27 CA ASP 4 -1.333 13.768 1.387 1.00999.00 C ATOM 28 CB ASP 4 0.073 14.291 1.691 1.00999.00 C ATOM 29 CG ASP 4 1.147 13.568 0.903 1.00999.00 C ATOM 30 OD1 ASP 4 1.617 12.509 1.371 1.00999.00 O ATOM 31 OD2 ASP 4 1.520 14.061 -0.182 1.00999.00 O ATOM 32 O ASP 4 -1.788 12.101 3.021 1.00999.00 O ATOM 33 C ASP 4 -1.480 12.355 1.858 1.00999.00 C ATOM 34 N ALA 5 -1.227 11.432 0.941 1.00999.00 N ATOM 35 CA ALA 5 -1.343 10.025 1.210 1.00999.00 C ATOM 36 CB ALA 5 -2.575 9.455 0.524 1.00999.00 C ATOM 37 O ALA 5 0.520 9.815 -0.299 1.00999.00 O ATOM 38 C ALA 5 -0.041 9.381 0.717 1.00999.00 C ATOM 39 N THR 6 0.432 8.363 1.420 1.00999.00 N ATOM 40 CA THR 6 1.666 7.690 1.011 1.00999.00 C ATOM 41 CB THR 6 2.840 8.050 1.940 1.00999.00 C ATOM 42 CG2 THR 6 3.112 9.546 1.898 1.00999.00 C ATOM 43 OG1 THR 6 2.519 7.680 3.287 1.00999.00 O ATOM 44 O THR 6 1.024 5.659 2.029 1.00999.00 O ATOM 45 C THR 6 1.404 6.208 1.016 1.00999.00 C ATOM 46 N ILE 7 1.636 5.544 -0.104 1.00999.00 N ATOM 47 CA ILE 7 1.403 4.106 -0.141 1.00999.00 C ATOM 48 CB ILE 7 0.497 3.711 -1.322 1.00999.00 C ATOM 49 CG1 ILE 7 -0.819 4.486 -1.267 1.00999.00 C ATOM 50 CG2 ILE 7 0.270 2.207 -1.339 1.00999.00 C ATOM 51 CD1 ILE 7 -1.620 4.242 -0.006 1.00999.00 C ATOM 52 O ILE 7 3.520 3.668 -1.130 1.00999.00 O ATOM 53 C ILE 7 2.747 3.420 -0.216 1.00999.00 C ATOM 54 N THR 8 3.028 2.561 0.756 1.00999.00 N ATOM 55 CA THR 8 4.395 2.056 0.916 1.00999.00 C ATOM 56 CB THR 8 4.924 2.299 2.341 1.00999.00 C ATOM 57 CG2 THR 8 6.338 1.759 2.485 1.00999.00 C ATOM 58 OG1 THR 8 4.940 3.705 2.614 1.00999.00 O ATOM 59 O THR 8 3.729 -0.203 1.214 1.00999.00 O ATOM 60 C THR 8 4.421 0.579 0.587 1.00999.00 C ATOM 61 N TYR 9 5.235 0.218 -0.389 1.00999.00 N ATOM 62 CA TYR 9 5.397 -1.181 -0.802 1.00999.00 C ATOM 63 CB TYR 9 5.618 -1.273 -2.312 1.00999.00 C ATOM 64 CG TYR 9 4.405 -0.893 -3.132 1.00999.00 C ATOM 65 CD1 TYR 9 4.160 0.434 -3.466 1.00999.00 C ATOM 66 CD2 TYR 9 3.512 -1.860 -3.572 1.00999.00 C ATOM 67 CE1 TYR 9 3.054 0.791 -4.215 1.00999.00 C ATOM 68 CE2 TYR 9 2.402 -1.523 -4.322 1.00999.00 C ATOM 69 CZ TYR 9 2.178 -0.184 -4.641 1.00999.00 C ATOM 70 OH TYR 9 1.077 0.169 -5.388 1.00999.00 H ATOM 71 O TYR 9 7.701 -1.303 -0.099 1.00999.00 O ATOM 72 C TYR 9 6.575 -1.805 -0.032 1.00999.00 C ATOM 73 N VAL 10 6.301 -2.872 0.713 1.00999.00 N ATOM 74 CA VAL 10 7.251 -3.379 1.714 1.00999.00 C ATOM 75 CB VAL 10 6.709 -3.206 3.146 1.00999.00 C ATOM 76 CG1 VAL 10 7.677 -3.805 4.155 1.00999.00 C ATOM 77 CG2 VAL 10 6.460 -1.737 3.446 1.00999.00 C ATOM 78 O VAL 10 6.723 -5.650 1.248 1.00999.00 O ATOM 79 C VAL 10 7.612 -4.847 1.499 1.00999.00 C ATOM 80 N ASP 11 8.900 -5.192 1.635 1.00999.00 N ATOM 81 CA ASP 11 9.305 -6.617 1.738 1.00999.00 C ATOM 82 CB ASP 11 10.699 -6.822 1.145 1.00999.00 C ATOM 83 CG ASP 11 11.132 -8.275 1.159 1.00999.00 C ATOM 84 OD1 ASP 11 10.770 -8.992 2.116 1.00999.00 O ATOM 85 OD2 ASP 11 11.831 -8.696 0.214 1.00999.00 O ATOM 86 O ASP 11 10.062 -6.511 4.028 1.00999.00 O ATOM 87 C ASP 11 9.240 -6.975 3.213 1.00999.00 C ATOM 88 N ASP 12 8.217 -7.745 3.565 1.00999.00 N ATOM 89 CA ASP 12 7.972 -8.088 4.959 1.00999.00 C ATOM 90 CB ASP 12 6.514 -8.506 5.160 1.00999.00 C ATOM 91 CG ASP 12 6.169 -9.785 4.422 1.00999.00 C ATOM 92 OD1 ASP 12 7.074 -10.371 3.792 1.00999.00 O ATOM 93 OD2 ASP 12 4.992 -10.200 4.473 1.00999.00 O ATOM 94 O ASP 12 8.809 -9.515 6.679 1.00999.00 O ATOM 95 C ASP 12 8.867 -9.189 5.485 1.00999.00 C ATOM 96 N ASP 13 9.711 -9.755 4.625 1.00999.00 N ATOM 97 CA ASP 13 10.667 -10.744 5.112 1.00999.00 C ATOM 98 CB ASP 13 10.962 -11.783 4.027 1.00999.00 C ATOM 99 CG ASP 13 9.751 -12.626 3.682 1.00999.00 C ATOM 100 OD1 ASP 13 8.864 -12.771 4.549 1.00999.00 O ATOM 101 OD2 ASP 13 9.689 -13.142 2.547 1.00999.00 O ATOM 102 O ASP 13 12.586 -10.546 6.473 1.00999.00 O ATOM 103 C ASP 13 11.933 -10.070 5.554 1.00999.00 C ATOM 104 N LYS 14 12.296 -8.981 4.874 1.00999.00 N ATOM 105 CA LYS 14 13.541 -8.283 5.148 1.00999.00 C ATOM 106 CB LYS 14 14.335 -8.075 3.857 1.00999.00 C ATOM 107 CG LYS 14 14.677 -9.363 3.126 1.00999.00 C ATOM 108 CD LYS 14 15.598 -10.243 3.955 1.00999.00 C ATOM 109 CE LYS 14 16.002 -11.494 3.192 1.00999.00 C ATOM 110 NZ LYS 14 16.860 -12.393 4.014 1.00999.00 N ATOM 111 O LYS 14 14.234 -6.224 6.144 1.00999.00 O ATOM 112 C LYS 14 13.281 -6.938 5.824 1.00999.00 C ATOM 113 N GLY 15 12.008 -6.653 6.089 1.00999.00 N ATOM 114 CA GLY 15 11.551 -5.364 6.635 1.00999.00 C ATOM 115 O GLY 15 12.969 -3.427 6.506 1.00999.00 O ATOM 116 C GLY 15 12.247 -4.220 5.903 1.00999.00 C ATOM 117 N GLY 16 12.001 -4.152 4.588 1.00999.00 N ATOM 118 CA GLY 16 12.675 -3.185 3.725 1.00999.00 C ATOM 119 O GLY 16 14.975 -2.872 3.098 1.00999.00 O ATOM 120 C GLY 16 14.037 -3.661 3.220 1.00999.00 C ATOM 121 N ALA 17 14.143 -4.953 2.930 1.00999.00 N ATOM 122 CA ALA 17 15.371 -5.535 2.371 1.00999.00 C ATOM 123 CB ALA 17 16.146 -6.274 3.452 1.00999.00 C ATOM 124 O ALA 17 14.205 -7.375 1.351 1.00999.00 O ATOM 125 C ALA 17 15.043 -6.479 1.210 1.00999.00 C ATOM 126 N GLN 18 12.006 -4.147 4.596 1.00999.00 N ATOM 127 CA GLN 18 12.676 -3.181 3.712 1.00999.00 C ATOM 128 CB GLN 18 13.740 -3.880 2.862 1.00999.00 C ATOM 129 CG GLN 18 14.668 -2.930 2.126 1.00999.00 C ATOM 130 CD GLN 18 14.088 -2.450 0.809 1.00999.00 C ATOM 131 OE1 GLN 18 12.997 -2.861 0.416 1.00999.00 O ATOM 132 NE2 GLN 18 14.819 -1.578 0.125 1.00999.00 N ATOM 133 O GLN 18 10.761 -3.171 2.268 1.00999.00 O ATOM 134 C GLN 18 11.625 -2.499 2.834 1.00999.00 C ATOM 135 N VAL 19 11.654 -1.175 2.756 1.00999.00 N ATOM 136 CA VAL 19 10.716 -0.471 1.876 1.00999.00 C ATOM 137 CB VAL 19 10.512 0.989 2.320 1.00999.00 C ATOM 138 CG1 VAL 19 9.614 1.724 1.337 1.00999.00 C ATOM 139 CG2 VAL 19 9.928 1.042 3.724 1.00999.00 C ATOM 140 O VAL 19 12.434 -0.282 0.215 1.00999.00 O ATOM 141 C VAL 19 11.249 -0.550 0.463 1.00999.00 C ATOM 142 N GLY 20 10.373 -0.940 -0.457 1.00999.00 N ATOM 143 CA GLY 20 10.755 -1.146 -1.847 1.00999.00 C ATOM 144 O GLY 20 11.137 0.319 -3.671 1.00999.00 O ATOM 145 C GLY 20 10.430 0.065 -2.712 1.00999.00 C ATOM 146 N ASP 21 9.366 0.787 -2.377 1.00999.00 N ATOM 147 CA ASP 21 8.934 1.974 -3.136 1.00999.00 C ATOM 148 CB ASP 21 8.432 1.569 -4.523 1.00999.00 C ATOM 149 CG ASP 21 8.362 2.742 -5.482 1.00999.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 141 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 56.53 78.4 37 24.0 154 ARMSMC SECONDARY STRUCTURE . . 60.82 80.8 26 29.5 88 ARMSMC SURFACE . . . . . . . . 77.56 57.9 19 17.6 108 ARMSMC BURIED . . . . . . . . 14.82 100.0 18 39.1 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.25 46.7 15 23.4 64 ARMSSC1 RELIABLE SIDE CHAINS . 87.83 46.2 13 24.5 53 ARMSSC1 SECONDARY STRUCTURE . . 74.69 63.6 11 28.2 39 ARMSSC1 SURFACE . . . . . . . . 111.97 14.3 7 15.6 45 ARMSSC1 BURIED . . . . . . . . 57.48 75.0 8 42.1 19 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.19 20.0 10 27.8 36 ARMSSC2 RELIABLE SIDE CHAINS . 87.19 20.0 10 31.2 32 ARMSSC2 SECONDARY STRUCTURE . . 79.70 33.3 6 31.6 19 ARMSSC2 SURFACE . . . . . . . . 88.76 16.7 6 24.0 25 ARMSSC2 BURIED . . . . . . . . 84.79 25.0 4 36.4 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.15 0.0 3 42.9 7 ARMSSC3 RELIABLE SIDE CHAINS . 87.77 0.0 2 33.3 6 ARMSSC3 SECONDARY STRUCTURE . . 47.32 0.0 2 50.0 4 ARMSSC3 SURFACE . . . . . . . . 80.96 0.0 2 33.3 6 ARMSSC3 BURIED . . . . . . . . 58.21 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 116.21 0.0 1 25.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 116.21 0.0 1 25.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 116.21 0.0 1 25.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.09 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.09 20 25.6 78 CRMSCA CRN = ALL/NP . . . . . 0.1046 CRMSCA SECONDARY STRUCTURE . . 2.16 14 31.8 44 CRMSCA SURFACE . . . . . . . . 2.37 11 20.0 55 CRMSCA BURIED . . . . . . . . 1.69 9 39.1 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.19 95 25.0 380 CRMSMC SECONDARY STRUCTURE . . 2.28 67 30.9 217 CRMSMC SURFACE . . . . . . . . 2.48 50 18.7 267 CRMSMC BURIED . . . . . . . . 1.81 45 39.8 113 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.18 63 8.0 785 CRMSSC RELIABLE SIDE CHAINS . 2.70 57 7.6 749 CRMSSC SECONDARY STRUCTURE . . 3.19 46 9.4 490 CRMSSC SURFACE . . . . . . . . 3.69 29 5.5 526 CRMSSC BURIED . . . . . . . . 2.65 34 13.1 259 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.64 141 12.9 1097 CRMSALL SECONDARY STRUCTURE . . 2.68 100 15.0 666 CRMSALL SURFACE . . . . . . . . 3.02 71 9.5 746 CRMSALL BURIED . . . . . . . . 2.18 70 19.9 351 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 997.433 0.997 0.997 20 25.6 78 ERRCA SECONDARY STRUCTURE . . 997.356 0.997 0.997 14 31.8 44 ERRCA SURFACE . . . . . . . . 997.090 0.996 0.996 11 20.0 55 ERRCA BURIED . . . . . . . . 997.852 0.998 0.998 9 39.1 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 997.374 0.997 0.997 95 25.0 380 ERRMC SECONDARY STRUCTURE . . 997.292 0.997 0.997 67 30.9 217 ERRMC SURFACE . . . . . . . . 997.022 0.996 0.996 50 18.7 267 ERRMC BURIED . . . . . . . . 997.764 0.998 0.998 45 39.8 113 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 996.542 0.995 0.995 63 8.0 785 ERRSC RELIABLE SIDE CHAINS . 996.866 0.996 0.996 57 7.6 749 ERRSC SECONDARY STRUCTURE . . 996.640 0.995 0.995 46 9.4 490 ERRSC SURFACE . . . . . . . . 995.783 0.994 0.994 29 5.5 526 ERRSC BURIED . . . . . . . . 997.189 0.996 0.996 34 13.1 259 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 997.021 0.996 0.996 141 12.9 1097 ERRALL SECONDARY STRUCTURE . . 997.034 0.996 0.996 100 15.0 666 ERRALL SURFACE . . . . . . . . 996.519 0.995 0.995 71 9.5 746 ERRALL BURIED . . . . . . . . 997.531 0.997 0.997 70 19.9 351 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 12 14 15 20 20 20 78 DISTCA CA (P) 15.38 17.95 19.23 25.64 25.64 78 DISTCA CA (RMS) 0.62 0.78 1.00 2.09 2.09 DISTCA ALL (N) 60 89 103 131 141 141 1097 DISTALL ALL (P) 5.47 8.11 9.39 11.94 12.85 1097 DISTALL ALL (RMS) 0.64 0.95 1.27 2.09 2.64 DISTALL END of the results output