####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 49 ( 196), selected 49 , name T0569AL285_1-D1 # Molecule2: number of CA atoms 78 ( 1097), selected 49 , name T0569-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0569AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 49 4 - 60 4.79 4.79 LCS_AVERAGE: 62.82 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 4 - 53 1.86 5.31 LCS_AVERAGE: 47.15 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 4 - 15 0.69 5.40 LONGEST_CONTINUOUS_SEGMENT: 12 20 - 31 0.99 6.01 LONGEST_CONTINUOUS_SEGMENT: 12 21 - 32 0.93 5.42 LCS_AVERAGE: 11.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 49 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 4 D 4 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT A 5 A 5 12 42 49 13 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 6 T 6 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT I 7 I 7 12 42 49 14 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 8 T 8 12 42 49 11 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT Y 9 Y 9 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 10 V 10 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 11 D 11 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 12 D 12 12 42 49 13 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 13 D 13 12 42 49 8 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT K 14 K 14 12 42 49 12 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT G 15 G 15 12 42 49 4 8 22 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT Q 18 Q 18 3 42 49 3 8 9 17 26 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 19 V 19 9 42 49 3 4 10 16 20 28 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT G 20 G 20 12 42 49 3 10 17 21 36 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 21 D 21 12 42 49 4 15 24 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT I 22 I 22 12 42 49 10 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 23 V 23 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 24 T 24 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 25 V 25 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 26 T 26 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT G 27 G 27 12 42 49 13 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT K 28 K 28 12 42 49 5 18 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 29 T 29 12 42 49 3 14 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 30 D 30 12 42 49 4 6 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 31 D 31 12 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT S 32 S 32 12 42 49 4 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 33 T 33 4 42 49 3 12 26 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 34 T 34 4 42 49 4 5 6 18 30 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT Y 35 Y 35 4 42 49 4 5 21 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 36 T 36 4 42 49 4 5 20 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 37 V 37 8 42 49 3 4 27 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 41 D 41 9 42 49 5 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT G 42 G 42 9 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT Y 43 Y 43 9 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT E 44 E 44 9 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT Y 45 Y 45 9 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 46 V 46 9 42 49 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT G 47 G 47 9 42 49 13 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT T 48 T 48 9 42 49 3 14 23 31 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 49 D 49 9 42 49 3 14 22 31 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT V 53 V 53 4 42 49 3 4 7 9 14 31 38 41 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT S 54 S 54 4 6 49 3 4 5 5 10 19 32 38 43 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT S 55 S 55 4 6 49 3 4 5 7 10 18 27 31 39 43 44 44 44 44 44 45 46 46 46 46 LCS_GDT D 56 D 56 4 6 49 3 4 5 5 6 6 8 11 16 20 28 37 39 44 44 45 46 46 46 46 LCS_GDT G 57 G 57 4 6 49 3 4 5 5 6 6 6 8 10 12 17 20 22 31 41 45 46 46 46 46 LCS_GDT K 58 K 58 4 6 49 3 3 4 5 6 6 6 7 9 12 12 14 16 18 22 25 28 31 33 35 LCS_GDT T 59 T 59 3 4 49 3 3 3 4 4 5 6 7 9 12 15 15 19 21 26 29 30 39 40 42 LCS_GDT V 60 V 60 3 4 49 3 3 3 4 4 5 6 6 7 7 7 8 8 9 20 25 36 39 40 46 LCS_AVERAGE LCS_A: 40.55 ( 11.70 47.15 62.82 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 25 28 33 37 38 40 41 43 43 44 44 44 44 44 45 46 46 46 46 GDT PERCENT_AT 19.23 32.05 35.90 42.31 47.44 48.72 51.28 52.56 55.13 55.13 56.41 56.41 56.41 56.41 56.41 57.69 58.97 58.97 58.97 58.97 GDT RMS_LOCAL 0.38 0.56 0.70 1.09 1.30 1.40 1.61 1.73 2.06 2.06 2.32 2.32 2.32 2.32 2.32 2.89 3.35 3.35 3.35 3.35 GDT RMS_ALL_AT 5.46 5.48 5.50 5.35 5.37 5.37 5.34 5.35 5.23 5.23 5.14 5.14 5.14 5.14 5.14 5.01 4.92 4.92 4.92 4.92 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 4 D 4 0.654 4 0.103 0.103 0.964 90.476 45.238 LGA A 5 A 5 0.560 1 0.117 0.117 0.802 92.857 74.286 LGA T 6 T 6 0.376 3 0.041 0.041 0.424 100.000 57.143 LGA I 7 I 7 0.388 4 0.124 0.124 0.423 100.000 50.000 LGA T 8 T 8 0.593 3 0.052 0.052 0.803 90.476 51.701 LGA Y 9 Y 9 0.426 8 0.022 0.022 0.704 95.238 31.746 LGA V 10 V 10 0.752 3 0.068 0.068 0.793 90.476 51.701 LGA D 11 D 11 0.705 4 0.077 0.077 0.938 90.476 45.238 LGA D 12 D 12 0.943 4 0.080 0.080 1.074 85.952 42.976 LGA D 13 D 13 1.255 4 0.044 0.044 1.444 81.429 40.714 LGA K 14 K 14 1.098 5 0.211 0.211 1.324 81.429 36.190 LGA G 15 G 15 2.649 0 0.183 0.183 3.420 57.500 57.500 LGA Q 18 Q 18 3.460 5 0.069 0.069 3.460 51.786 23.016 LGA V 19 V 19 4.322 3 0.096 0.096 4.736 38.810 22.177 LGA G 20 G 20 3.056 0 0.400 0.400 3.257 61.429 61.429 LGA D 21 D 21 1.888 4 0.084 0.084 2.184 72.976 36.488 LGA I 22 I 22 1.064 4 0.028 0.028 1.326 83.690 41.845 LGA V 23 V 23 0.573 3 0.136 0.136 0.743 90.476 51.701 LGA T 24 T 24 0.933 3 0.155 0.155 1.715 83.810 47.891 LGA V 25 V 25 0.541 3 0.062 0.062 0.579 92.857 53.061 LGA T 26 T 26 0.835 3 0.048 0.048 0.986 90.476 51.701 LGA G 27 G 27 1.156 0 0.139 0.139 1.156 83.690 83.690 LGA K 28 K 28 1.564 5 0.050 0.050 1.564 81.548 36.243 LGA T 29 T 29 1.841 3 0.659 0.659 3.440 69.286 39.592 LGA D 30 D 30 1.916 4 0.133 0.133 1.916 79.286 39.643 LGA D 31 D 31 0.763 4 0.054 0.054 0.873 90.476 45.238 LGA S 32 S 32 0.978 2 0.030 0.030 1.035 88.214 58.810 LGA T 33 T 33 2.014 3 0.129 0.129 2.014 75.119 42.925 LGA T 34 T 34 3.753 3 0.206 0.206 3.753 48.333 27.619 LGA Y 35 Y 35 2.341 8 0.098 0.098 3.363 57.262 19.087 LGA T 36 T 36 2.723 3 0.071 0.071 2.723 62.857 35.918 LGA V 37 V 37 2.193 3 0.605 0.605 2.477 64.762 37.007 LGA D 41 D 41 0.568 4 0.433 0.433 1.083 90.595 45.298 LGA G 42 G 42 0.999 0 0.100 0.100 2.083 81.786 81.786 LGA Y 43 Y 43 0.898 8 0.092 0.092 1.431 85.952 28.651 LGA E 44 E 44 0.841 5 0.073 0.073 0.944 90.476 40.212 LGA Y 45 Y 45 0.682 8 0.062 0.062 0.914 90.476 30.159 LGA V 46 V 46 0.780 3 0.026 0.026 0.856 90.476 51.701 LGA G 47 G 47 1.032 0 0.209 0.209 1.032 90.595 90.595 LGA T 48 T 48 2.148 3 0.124 0.124 2.305 66.786 38.163 LGA D 49 D 49 2.295 4 0.660 0.660 2.713 62.857 31.429 LGA V 53 V 53 4.788 3 0.107 0.107 5.035 30.119 17.211 LGA S 54 S 54 6.518 2 0.108 0.108 8.011 13.214 8.810 LGA S 55 S 55 7.812 2 0.650 0.650 11.449 5.119 3.413 LGA D 56 D 56 12.774 4 0.166 0.166 16.081 0.000 0.000 LGA G 57 G 57 13.355 0 0.685 0.685 14.423 0.000 0.000 LGA K 58 K 58 17.537 5 0.667 0.667 17.537 0.000 0.000 LGA T 59 T 59 16.243 3 0.068 0.068 17.000 0.000 0.000 LGA V 60 V 60 15.463 3 0.245 0.245 15.624 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 49 196 196 100.00 362 196 54.14 78 SUMMARY(RMSD_GDC): 4.786 4.828 4.828 42.589 24.448 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 49 78 4.0 41 1.73 46.154 48.067 2.236 LGA_LOCAL RMSD: 1.734 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.349 Number of assigned atoms: 49 Std_ASGN_ATOMS RMSD: 4.786 Standard rmsd on all 49 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.464135 * X + -0.797384 * Y + 0.385691 * Z + 38.207623 Y_new = -0.679138 * X + 0.040819 * Y + -0.732875 * Z + -27.855545 Z_new = 0.568639 * X + -0.602090 * Y + -0.560480 * Z + -10.541636 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.170306 -0.604850 -2.320418 [DEG: -124.3494 -34.6554 -132.9502 ] ZXZ: 0.484443 2.165761 2.384759 [DEG: 27.7565 124.0890 136.6367 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0569AL285_1-D1 REMARK 2: T0569-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0569AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 49 78 4.0 41 1.73 48.067 4.79 REMARK ---------------------------------------------------------- MOLECULE T0569AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3i57A ATOM 1 N ASP 4 -2.192 14.153 1.406 1.00 0.00 N ATOM 2 CA ASP 4 -1.244 13.252 0.741 1.00 0.00 C ATOM 3 C ASP 4 -1.295 11.893 1.366 1.00 0.00 C ATOM 4 O ASP 4 -1.447 11.754 2.579 1.00 0.00 O ATOM 5 N ALA 5 -1.135 10.885 0.521 1.00 0.00 N ATOM 6 CA ALA 5 -1.180 9.511 0.941 1.00 0.00 C ATOM 7 C ALA 5 0.066 8.837 0.351 1.00 0.00 C ATOM 8 O ALA 5 0.482 9.172 -0.766 1.00 0.00 O ATOM 9 N THR 6 0.650 7.903 1.086 1.00 0.00 N ATOM 10 CA THR 6 1.839 7.207 0.591 1.00 0.00 C ATOM 11 C THR 6 1.618 5.730 0.777 1.00 0.00 C ATOM 12 O THR 6 1.385 5.282 1.880 1.00 0.00 O ATOM 13 N ILE 7 1.725 4.958 -0.292 1.00 0.00 N ATOM 14 CA ILE 7 1.527 3.521 -0.155 1.00 0.00 C ATOM 15 C ILE 7 2.867 2.849 -0.334 1.00 0.00 C ATOM 16 O ILE 7 3.513 3.012 -1.360 1.00 0.00 O ATOM 17 N THR 8 3.292 2.096 0.676 1.00 0.00 N ATOM 18 CA THR 8 4.680 1.629 0.708 1.00 0.00 C ATOM 19 C THR 8 4.703 0.126 0.527 1.00 0.00 C ATOM 20 O THR 8 4.116 -0.597 1.312 1.00 0.00 O ATOM 21 N TYR 9 5.395 -0.321 -0.505 1.00 0.00 N ATOM 22 CA TYR 9 5.541 -1.753 -0.793 1.00 0.00 C ATOM 23 C TYR 9 6.822 -2.280 -0.124 1.00 0.00 C ATOM 24 O TYR 9 7.917 -1.773 -0.384 1.00 0.00 O ATOM 25 N VAL 10 6.673 -3.269 0.754 1.00 0.00 N ATOM 26 CA VAL 10 7.754 -3.658 1.669 1.00 0.00 C ATOM 27 C VAL 10 8.124 -5.136 1.557 1.00 0.00 C ATOM 28 O VAL 10 7.231 -5.972 1.504 1.00 0.00 O ATOM 29 N ASP 11 9.426 -5.449 1.560 1.00 0.00 N ATOM 30 CA ASP 11 9.878 -6.850 1.752 1.00 0.00 C ATOM 31 C ASP 11 10.010 -7.056 3.251 1.00 0.00 C ATOM 32 O ASP 11 10.916 -6.501 3.904 1.00 0.00 O ATOM 33 N ASP 12 9.060 -7.800 3.806 1.00 0.00 N ATOM 34 CA ASP 12 9.002 -8.002 5.247 1.00 0.00 C ATOM 35 C ASP 12 9.984 -9.031 5.762 1.00 0.00 C ATOM 36 O ASP 12 10.086 -9.235 6.980 1.00 0.00 O ATOM 37 N ASP 13 10.728 -9.672 4.862 1.00 0.00 N ATOM 38 CA ASP 13 11.763 -10.593 5.317 1.00 0.00 C ATOM 39 C ASP 13 13.057 -9.861 5.523 1.00 0.00 C ATOM 40 O ASP 13 13.833 -10.232 6.395 1.00 0.00 O ATOM 41 N LYS 14 13.303 -8.842 4.697 1.00 0.00 N ATOM 42 CA LYS 14 14.553 -8.103 4.739 1.00 0.00 C ATOM 43 C LYS 14 14.346 -6.701 5.305 1.00 0.00 C ATOM 44 O LYS 14 15.314 -5.945 5.427 1.00 0.00 O ATOM 45 N GLY 15 13.109 -6.406 5.702 1.00 0.00 N ATOM 46 CA GLY 15 12.692 -5.075 6.170 1.00 0.00 C ATOM 47 C GLY 15 13.260 -4.002 5.245 1.00 0.00 C ATOM 48 O GLY 15 14.031 -3.142 5.668 1.00 0.00 O ATOM 49 N GLN 18 12.854 -4.066 3.979 1.00 0.00 N ATOM 50 CA GLN 18 13.381 -3.187 2.925 1.00 0.00 C ATOM 51 C GLN 18 12.210 -2.612 2.126 1.00 0.00 C ATOM 52 O GLN 18 11.299 -3.349 1.745 1.00 0.00 O ATOM 53 N VAL 19 12.195 -1.302 1.913 1.00 0.00 N ATOM 54 CA VAL 19 11.135 -0.705 1.095 1.00 0.00 C ATOM 55 C VAL 19 11.487 -0.919 -0.360 1.00 0.00 C ATOM 56 O VAL 19 12.624 -0.664 -0.783 1.00 0.00 O ATOM 57 N GLY 20 10.513 -1.414 -1.116 1.00 0.00 N ATOM 58 CA GLY 20 10.722 -1.755 -2.516 1.00 0.00 C ATOM 59 C GLY 20 10.258 -0.642 -3.449 1.00 0.00 C ATOM 60 O GLY 20 10.831 -0.479 -4.511 1.00 0.00 O ATOM 61 N ASP 21 9.226 0.096 -3.053 1.00 0.00 N ATOM 62 CA ASP 21 8.672 1.193 -3.864 1.00 0.00 C ATOM 63 C ASP 21 7.685 1.963 -3.004 1.00 0.00 C ATOM 64 O ASP 21 7.089 1.410 -2.081 1.00 0.00 O ATOM 65 N ILE 22 7.539 3.249 -3.290 1.00 0.00 N ATOM 66 CA ILE 22 6.471 4.039 -2.654 1.00 0.00 C ATOM 67 C ILE 22 5.689 4.786 -3.702 1.00 0.00 C ATOM 68 O ILE 22 6.287 5.419 -4.593 1.00 0.00 O ATOM 69 N VAL 23 4.363 4.719 -3.595 1.00 0.00 N ATOM 70 CA VAL 23 3.483 5.423 -4.520 1.00 0.00 C ATOM 71 C VAL 23 2.842 6.537 -3.727 1.00 0.00 C ATOM 72 O VAL 23 2.239 6.266 -2.678 1.00 0.00 O ATOM 73 N THR 24 2.948 7.763 -4.244 1.00 0.00 N ATOM 74 CA THR 24 2.324 8.947 -3.656 1.00 0.00 C ATOM 75 C THR 24 1.024 9.289 -4.371 1.00 0.00 C ATOM 76 O THR 24 0.925 9.142 -5.603 1.00 0.00 O ATOM 77 N VAL 25 0.021 9.733 -3.603 1.00 0.00 N ATOM 78 CA VAL 25 -1.251 10.217 -4.159 1.00 0.00 C ATOM 79 C VAL 25 -1.608 11.493 -3.412 1.00 0.00 C ATOM 80 O VAL 25 -1.292 11.615 -2.246 1.00 0.00 O ATOM 81 N THR 26 -2.248 12.444 -4.087 1.00 0.00 N ATOM 82 CA THR 26 -2.806 13.617 -3.429 1.00 0.00 C ATOM 83 C THR 26 -4.290 13.651 -3.719 1.00 0.00 C ATOM 84 O THR 26 -4.723 13.202 -4.782 1.00 0.00 O ATOM 85 N GLY 27 -5.066 14.211 -2.780 1.00 0.00 N ATOM 86 CA GLY 27 -6.496 14.347 -3.005 1.00 0.00 C ATOM 87 C GLY 27 -7.124 15.338 -2.042 1.00 0.00 C ATOM 88 O GLY 27 -6.439 15.963 -1.216 1.00 0.00 O ATOM 89 N LYS 28 -8.439 15.470 -2.168 1.00 0.00 N ATOM 90 CA LYS 28 -9.220 16.351 -1.359 1.00 0.00 C ATOM 91 C LYS 28 -9.712 15.645 -0.112 1.00 0.00 C ATOM 92 O LYS 28 -9.981 14.430 -0.107 1.00 0.00 O ATOM 93 N THR 29 -9.843 16.418 0.947 1.00 0.00 N ATOM 94 CA THR 29 -10.390 15.893 2.179 1.00 0.00 C ATOM 95 C THR 29 -11.749 15.285 1.901 1.00 0.00 C ATOM 96 O THR 29 -12.587 15.903 1.235 1.00 0.00 O ATOM 97 N ASP 30 -11.949 14.072 2.426 1.00 0.00 N ATOM 98 CA ASP 30 -13.168 13.290 2.281 1.00 0.00 C ATOM 99 C ASP 30 -13.355 12.624 0.911 1.00 0.00 C ATOM 100 O ASP 30 -14.302 11.873 0.711 1.00 0.00 O ATOM 101 N ASP 31 -12.441 12.883 -0.021 1.00 0.00 N ATOM 102 CA ASP 31 -12.464 12.155 -1.279 1.00 0.00 C ATOM 103 C ASP 31 -12.056 10.711 -1.003 1.00 0.00 C ATOM 104 O ASP 31 -11.138 10.470 -0.228 1.00 0.00 O ATOM 105 N SER 32 -12.738 9.751 -1.634 1.00 0.00 N ATOM 106 CA SER 32 -12.273 8.357 -1.557 1.00 0.00 C ATOM 107 C SER 32 -10.921 8.206 -2.290 1.00 0.00 C ATOM 108 O SER 32 -10.779 8.659 -3.432 1.00 0.00 O ATOM 109 N THR 33 -9.923 7.596 -1.640 1.00 0.00 N ATOM 110 CA THR 33 -8.562 7.594 -2.254 1.00 0.00 C ATOM 111 C THR 33 -8.629 6.734 -3.521 1.00 0.00 C ATOM 112 O THR 33 -8.961 5.578 -3.423 1.00 0.00 O ATOM 113 N THR 34 -8.371 7.310 -4.711 1.00 0.00 N ATOM 114 CA THR 34 -8.592 6.563 -5.945 1.00 0.00 C ATOM 115 C THR 34 -7.404 5.689 -6.251 1.00 0.00 C ATOM 116 O THR 34 -6.618 5.985 -7.162 1.00 0.00 O ATOM 117 N TYR 35 -7.252 4.631 -5.458 1.00 0.00 N ATOM 118 CA TYR 35 -6.098 3.751 -5.566 1.00 0.00 C ATOM 119 C TYR 35 -6.516 2.340 -5.201 1.00 0.00 C ATOM 120 O TYR 35 -7.368 2.122 -4.308 1.00 0.00 O ATOM 121 N THR 36 -5.876 1.399 -5.877 1.00 0.00 N ATOM 122 CA THR 36 -5.939 -0.012 -5.518 1.00 0.00 C ATOM 123 C THR 36 -4.527 -0.574 -5.466 1.00 0.00 C ATOM 124 O THR 36 -3.665 -0.207 -6.271 1.00 0.00 O ATOM 125 N VAL 37 -4.299 -1.469 -4.526 1.00 0.00 N ATOM 126 CA VAL 37 -3.008 -2.124 -4.396 1.00 0.00 C ATOM 127 C VAL 37 -2.874 -3.274 -5.386 1.00 0.00 C ATOM 128 O VAL 37 -1.840 -3.938 -5.412 1.00 0.00 O ATOM 129 N ASP 41 7.727 -10.860 -9.300 1.00 0.00 N ATOM 130 CA ASP 41 9.149 -10.904 -8.995 1.00 0.00 C ATOM 131 C ASP 41 9.430 -11.924 -7.883 1.00 0.00 C ATOM 132 O ASP 41 10.487 -11.900 -7.291 1.00 0.00 O ATOM 133 N GLY 42 8.479 -12.788 -7.581 1.00 0.00 N ATOM 134 CA GLY 42 8.738 -13.842 -6.598 1.00 0.00 C ATOM 135 C GLY 42 8.142 -13.654 -5.232 1.00 0.00 C ATOM 136 O GLY 42 8.174 -14.569 -4.401 1.00 0.00 O ATOM 137 N TYR 43 7.619 -12.466 -4.966 1.00 0.00 N ATOM 138 CA TYR 43 7.054 -12.194 -3.648 1.00 0.00 C ATOM 139 C TYR 43 5.711 -12.855 -3.462 1.00 0.00 C ATOM 140 O TYR 43 5.070 -13.276 -4.420 1.00 0.00 O ATOM 141 N GLU 44 5.282 -12.920 -2.205 1.00 0.00 N ATOM 142 CA GLU 44 3.960 -13.409 -1.852 1.00 0.00 C ATOM 143 C GLU 44 3.406 -12.386 -0.896 1.00 0.00 C ATOM 144 O GLU 44 4.069 -12.044 0.077 1.00 0.00 O ATOM 145 N TYR 45 2.191 -11.910 -1.151 1.00 0.00 N ATOM 146 CA TYR 45 1.550 -10.978 -0.232 1.00 0.00 C ATOM 147 C TYR 45 1.415 -11.558 1.176 1.00 0.00 C ATOM 148 O TYR 45 0.893 -12.677 1.356 1.00 0.00 O ATOM 149 N VAL 46 1.878 -10.799 2.173 1.00 0.00 N ATOM 150 CA VAL 46 1.702 -11.170 3.581 1.00 0.00 C ATOM 151 C VAL 46 0.590 -10.356 4.235 1.00 0.00 C ATOM 152 O VAL 46 -0.338 -10.898 4.858 1.00 0.00 O ATOM 153 N GLY 47 0.675 -9.043 4.083 1.00 0.00 N ATOM 154 CA GLY 47 -0.287 -8.153 4.685 1.00 0.00 C ATOM 155 C GLY 47 -0.470 -6.867 3.884 1.00 0.00 C ATOM 156 O GLY 47 0.471 -6.083 3.729 1.00 0.00 O ATOM 157 N THR 48 -1.684 -6.653 3.381 1.00 0.00 N ATOM 158 CA THR 48 -2.024 -5.391 2.709 1.00 0.00 C ATOM 159 C THR 48 -2.759 -4.506 3.714 1.00 0.00 C ATOM 160 O THR 48 -3.899 -4.792 4.091 1.00 0.00 O ATOM 161 N ASP 49 -2.098 -3.433 4.135 1.00 0.00 N ATOM 162 CA ASP 49 -2.620 -2.520 5.159 1.00 0.00 C ATOM 163 C ASP 49 -3.348 -1.314 4.581 1.00 0.00 C ATOM 164 O ASP 49 -3.751 -0.424 5.320 1.00 0.00 O ATOM 165 N VAL 53 -3.533 -1.281 3.272 1.00 0.00 N ATOM 166 CA VAL 53 -4.309 -0.210 2.647 1.00 0.00 C ATOM 167 C VAL 53 -5.797 -0.553 2.749 1.00 0.00 C ATOM 168 O VAL 53 -6.241 -1.528 2.163 1.00 0.00 O ATOM 169 N SER 54 -6.570 0.236 3.507 1.00 0.00 N ATOM 170 CA SER 54 -7.936 -0.171 3.760 1.00 0.00 C ATOM 171 C SER 54 -8.854 0.063 2.564 1.00 0.00 C ATOM 172 O SER 54 -8.790 1.111 1.947 1.00 0.00 O ATOM 173 N SER 55 -9.736 -0.896 2.289 1.00 0.00 N ATOM 174 CA SER 55 -10.754 -0.748 1.246 1.00 0.00 C ATOM 175 C SER 55 -11.532 0.535 1.429 1.00 0.00 C ATOM 176 O SER 55 -12.050 0.801 2.516 1.00 0.00 O ATOM 177 N ASP 56 -11.615 1.354 0.386 1.00 0.00 N ATOM 178 CA ASP 56 -12.498 2.525 0.439 1.00 0.00 C ATOM 179 C ASP 56 -12.068 3.627 1.387 1.00 0.00 C ATOM 180 O ASP 56 -12.868 4.516 1.714 1.00 0.00 O ATOM 181 N GLY 57 -10.810 3.575 1.822 1.00 0.00 N ATOM 182 CA GLY 57 -10.186 4.633 2.633 1.00 0.00 C ATOM 183 C GLY 57 -10.344 6.006 1.954 1.00 0.00 C ATOM 184 O GLY 57 -10.195 6.095 0.733 1.00 0.00 O ATOM 185 N LYS 58 -10.659 7.040 2.748 1.00 0.00 N ATOM 186 CA LYS 58 -10.689 8.448 2.309 1.00 0.00 C ATOM 187 C LYS 58 -9.456 9.253 2.722 1.00 0.00 C ATOM 188 O LYS 58 -8.817 8.957 3.739 1.00 0.00 O ATOM 189 N THR 59 -9.174 10.324 1.983 1.00 0.00 N ATOM 190 CA THR 59 -8.202 11.312 2.419 1.00 0.00 C ATOM 191 C THR 59 -8.730 11.975 3.710 1.00 0.00 C ATOM 192 O THR 59 -9.920 12.304 3.795 1.00 0.00 O ATOM 193 N VAL 60 -7.842 12.159 4.692 1.00 0.00 N ATOM 194 CA VAL 60 -8.209 12.746 6.001 1.00 0.00 C ATOM 195 C VAL 60 -8.446 14.253 5.967 1.00 0.00 C ATOM 196 O VAL 60 -8.435 14.869 4.921 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 196 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 54.11 68.9 90 58.4 154 ARMSMC SECONDARY STRUCTURE . . 36.64 71.7 60 68.2 88 ARMSMC SURFACE . . . . . . . . 56.32 65.2 66 61.1 108 ARMSMC BURIED . . . . . . . . 47.50 79.2 24 52.2 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 64 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.79 (Number of atoms: 49) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.79 49 62.8 78 CRMSCA CRN = ALL/NP . . . . . 0.0977 CRMSCA SECONDARY STRUCTURE . . 4.20 32 72.7 44 CRMSCA SURFACE . . . . . . . . 4.70 36 65.5 55 CRMSCA BURIED . . . . . . . . 5.01 13 56.5 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.83 196 51.6 380 CRMSMC SECONDARY STRUCTURE . . 4.20 128 59.0 217 CRMSMC SURFACE . . . . . . . . 4.74 144 53.9 267 CRMSMC BURIED . . . . . . . . 5.07 52 46.0 113 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 785 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 749 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 490 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 526 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 259 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.83 196 17.9 1097 CRMSALL SECONDARY STRUCTURE . . 4.20 128 19.2 666 CRMSALL SURFACE . . . . . . . . 4.74 144 19.3 746 CRMSALL BURIED . . . . . . . . 5.07 52 14.8 351 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.630 1.000 0.500 49 62.8 78 ERRCA SECONDARY STRUCTURE . . 3.186 1.000 0.500 32 72.7 44 ERRCA SURFACE . . . . . . . . 3.683 1.000 0.500 36 65.5 55 ERRCA BURIED . . . . . . . . 3.484 1.000 0.500 13 56.5 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.643 1.000 0.500 196 51.6 380 ERRMC SECONDARY STRUCTURE . . 3.158 1.000 0.500 128 59.0 217 ERRMC SURFACE . . . . . . . . 3.686 1.000 0.500 144 53.9 267 ERRMC BURIED . . . . . . . . 3.523 1.000 0.500 52 46.0 113 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 785 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 749 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 490 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 526 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 259 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.643 1.000 0.500 196 17.9 1097 ERRALL SECONDARY STRUCTURE . . 3.158 1.000 0.500 128 19.2 666 ERRALL SURFACE . . . . . . . . 3.686 1.000 0.500 144 19.3 746 ERRALL BURIED . . . . . . . . 3.523 1.000 0.500 52 14.8 351 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 16 29 43 45 49 78 DISTCA CA (P) 2.56 20.51 37.18 55.13 57.69 78 DISTCA CA (RMS) 0.33 1.56 2.04 2.86 3.23 DISTCA ALL (N) 7 65 114 168 179 196 1097 DISTALL ALL (P) 0.64 5.93 10.39 15.31 16.32 1097 DISTALL ALL (RMS) 0.40 1.54 2.01 2.75 3.15 DISTALL END of the results output