####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 32 ( 297), selected 32 , name T0568TS075_1-D1 # Molecule2: number of CA atoms 120 ( 944), selected 32 , name T0568-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0568TS075_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 37 - 70 4.69 18.55 LCS_AVERAGE: 13.78 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 28 - 37 1.91 15.89 LCS_AVERAGE: 6.56 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 29 - 35 0.96 16.64 LCS_AVERAGE: 4.43 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 32 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 23 A 23 5 9 13 3 5 6 7 9 9 9 9 9 10 10 11 11 12 12 12 12 12 13 13 LCS_GDT Q 24 Q 24 5 9 13 4 5 6 7 9 9 9 9 9 10 11 11 11 12 12 12 13 13 14 15 LCS_GDT A 25 A 25 5 9 14 4 5 6 7 9 9 9 9 10 10 11 11 11 12 14 14 16 16 16 16 LCS_GDT E 26 E 26 5 9 15 4 5 6 7 9 9 9 9 10 10 11 13 13 13 14 15 16 16 16 16 LCS_GDT V 27 V 27 5 9 15 4 4 5 7 9 9 9 10 11 12 12 14 14 14 14 15 16 16 16 16 LCS_GDT R 28 R 28 6 10 15 3 5 6 8 9 10 11 11 13 13 13 14 14 14 14 15 16 16 16 18 LCS_GDT I 29 I 29 7 10 15 3 6 7 8 9 10 11 12 13 13 13 14 14 14 14 15 18 20 21 23 LCS_GDT D 30 D 30 7 10 15 5 6 7 8 9 10 11 12 13 13 13 14 14 14 14 15 18 20 21 22 LCS_GDT G 31 G 31 7 10 15 5 6 7 8 9 10 11 12 13 13 13 14 14 14 14 15 18 20 21 23 LCS_GDT P 32 P 32 7 10 15 5 6 7 8 9 10 11 12 13 13 13 14 14 14 14 15 18 20 21 23 LCS_GDT I 33 I 33 7 10 15 5 5 6 8 9 10 11 12 13 13 13 14 14 14 14 15 18 20 21 23 LCS_GDT E 34 E 34 7 10 15 5 5 7 8 9 10 11 12 13 13 13 14 14 14 14 15 17 20 21 23 LCS_GDT Y 35 Y 35 7 10 15 5 6 7 8 9 10 11 12 13 13 13 14 14 14 14 15 18 20 21 23 LCS_GDT G 36 G 36 6 10 15 5 6 7 8 9 10 11 12 13 13 13 14 14 14 14 15 16 19 21 23 LCS_GDT V 37 V 37 5 10 18 4 5 5 6 9 10 11 12 13 13 13 14 14 14 17 18 18 20 21 23 LCS_GDT F 38 F 38 5 9 18 3 4 5 6 9 10 11 12 13 13 13 15 17 17 17 18 18 20 21 23 LCS_GDT E 39 E 39 5 6 18 3 4 5 6 7 9 11 12 13 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT S 40 S 40 5 6 18 3 4 5 6 7 9 11 12 13 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT Q 57 Q 57 5 5 18 4 5 5 5 5 6 8 11 12 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT N 58 N 58 5 5 18 4 5 5 5 5 6 8 9 11 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT I 59 I 59 5 5 18 4 5 5 5 5 6 8 11 12 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT Q 60 Q 60 5 5 18 4 5 5 5 5 6 8 8 10 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT Q 61 Q 61 5 7 18 3 5 5 5 6 8 10 11 12 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT T 62 T 62 4 7 18 3 3 4 6 7 8 10 11 12 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT T 63 T 63 5 7 18 4 5 5 6 6 7 9 10 12 12 15 15 17 17 17 18 18 20 21 23 LCS_GDT E 64 E 64 5 7 18 4 5 5 6 7 8 10 11 12 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT V 65 V 65 5 7 18 3 5 5 6 7 8 10 11 12 14 15 15 17 17 17 18 18 20 21 23 LCS_GDT P 66 P 66 5 7 18 4 5 5 6 7 8 10 11 12 14 15 15 17 17 17 18 18 19 20 23 LCS_GDT A 67 A 67 5 7 18 4 5 5 6 7 8 10 11 12 14 15 15 17 17 17 18 18 19 20 23 LCS_GDT K 68 K 68 4 7 18 3 4 5 6 7 8 10 11 12 14 15 15 17 17 17 18 18 19 20 23 LCS_GDT L 69 L 69 3 5 18 3 3 3 4 4 8 10 11 12 14 15 15 17 17 17 18 18 19 20 23 LCS_GDT G 70 G 70 3 5 18 3 3 3 3 3 5 5 5 8 14 15 15 17 17 17 18 18 19 20 23 LCS_AVERAGE LCS_A: 8.26 ( 4.43 6.56 13.78 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 7 8 9 10 11 12 13 14 15 15 17 17 17 18 18 20 21 23 GDT PERCENT_AT 4.17 5.00 5.83 6.67 7.50 8.33 9.17 10.00 10.83 11.67 12.50 12.50 14.17 14.17 14.17 15.00 15.00 16.67 17.50 19.17 GDT RMS_LOCAL 0.29 0.50 0.73 1.01 1.27 2.04 2.28 2.65 3.00 3.59 3.75 3.75 4.22 4.22 4.22 4.69 4.69 7.13 7.33 7.78 GDT RMS_ALL_AT 17.61 16.07 16.22 16.31 16.45 15.88 15.78 16.46 16.13 18.96 18.72 18.72 18.58 18.58 18.58 18.55 18.55 15.01 15.16 15.92 # Checking swapping # possible swapping detected: D 30 D 30 # possible swapping detected: E 34 E 34 # possible swapping detected: E 39 E 39 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 23 A 23 27.090 0 0.633 0.574 29.028 0.000 0.000 LGA Q 24 Q 24 24.418 0 0.555 0.631 29.914 0.000 0.000 LGA A 25 A 25 19.444 0 0.116 0.122 21.227 0.000 0.000 LGA E 26 E 26 16.138 4 0.051 0.057 17.451 0.000 0.000 LGA V 27 V 27 11.159 0 0.038 1.112 13.050 0.119 0.068 LGA R 28 R 28 6.952 4 0.133 0.171 10.147 17.619 7.359 LGA I 29 I 29 3.450 0 0.068 1.435 4.776 52.738 55.357 LGA D 30 D 30 1.264 0 0.594 1.164 5.048 61.548 70.714 LGA G 31 G 31 3.196 0 0.096 0.096 3.196 67.619 67.619 LGA P 32 P 32 3.777 0 0.139 0.298 7.416 45.595 31.837 LGA I 33 I 33 1.798 0 0.025 0.696 6.991 81.667 53.095 LGA E 34 E 34 2.894 0 0.072 0.618 10.914 54.048 27.937 LGA Y 35 Y 35 2.109 0 0.057 0.109 9.483 81.786 41.944 LGA G 36 G 36 2.423 0 0.205 0.205 3.701 57.500 57.500 LGA V 37 V 37 1.479 0 0.073 0.071 3.561 83.690 71.429 LGA F 38 F 38 1.861 0 0.041 0.273 8.697 77.143 39.394 LGA E 39 E 39 3.488 0 0.024 0.927 12.263 47.143 23.651 LGA S 40 S 40 2.498 0 0.034 0.045 4.577 52.738 55.476 LGA Q 57 Q 57 14.707 0 0.084 0.455 15.471 0.000 0.159 LGA N 58 N 58 18.376 0 0.062 0.816 24.448 0.000 0.000 LGA I 59 I 59 16.880 0 0.100 0.693 20.870 0.000 0.000 LGA Q 60 Q 60 22.974 0 0.612 1.168 26.911 0.000 0.000 LGA Q 61 Q 61 23.164 0 0.128 0.845 27.112 0.000 0.000 LGA T 62 T 62 21.483 0 0.069 0.091 21.890 0.000 0.000 LGA T 63 T 63 21.233 0 0.617 0.571 22.520 0.000 0.000 LGA E 64 E 64 22.439 0 0.193 0.969 29.104 0.000 0.000 LGA V 65 V 65 21.121 0 0.153 1.111 24.315 0.000 0.000 LGA P 66 P 66 25.088 0 0.156 0.311 25.519 0.000 0.000 LGA A 67 A 67 26.412 0 0.459 0.543 28.511 0.000 0.000 LGA K 68 K 68 24.578 0 0.544 0.625 28.938 0.000 0.000 LGA L 69 L 69 21.285 0 0.207 1.379 22.968 0.000 0.000 LGA G 70 G 70 17.304 0 0.414 0.414 18.637 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 32 128 128 100.00 237 237 100.00 120 SUMMARY(RMSD_GDC): 13.242 12.964 13.210 6.508 5.029 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 32 120 4.0 12 2.65 9.167 8.761 0.437 LGA_LOCAL RMSD: 2.645 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.464 Number of assigned atoms: 32 Std_ASGN_ATOMS RMSD: 13.242 Standard rmsd on all 32 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.651596 * X + 0.161436 * Y + -0.741189 * Z + 33.361340 Y_new = -0.312927 * X + 0.832874 * Y + 0.456506 * Z + 12.397854 Z_new = 0.691014 * X + 0.529395 * Y + -0.492180 * Z + 30.980518 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.693872 -0.762890 2.319781 [DEG: -154.3475 -43.7104 132.9136 ] ZXZ: -2.122833 2.085388 0.917062 [DEG: -121.6294 119.4839 52.5438 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0568TS075_1-D1 REMARK 2: T0568-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0568TS075_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 32 120 4.0 12 2.65 8.761 13.24 REMARK ---------------------------------------------------------- MOLECULE T0568TS075_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0568 REMARK MODEL 1 REMARK PARENT N/A ATOM 197 N ALA 23 28.713 30.032 28.569 1.00 50.00 N ATOM 198 CA ALA 23 29.086 29.231 27.439 1.00 50.00 C ATOM 199 C ALA 23 30.204 28.344 27.973 1.00 50.00 C ATOM 200 O ALA 23 30.520 27.323 27.386 1.00 50.00 O ATOM 201 H ALA 23 28.884 30.915 28.570 1.00 50.00 H ATOM 202 CB ALA 23 29.504 30.118 26.275 1.00 50.00 C ATOM 203 N GLN 24 30.784 28.740 29.096 1.00 50.00 N ATOM 204 CA GLN 24 31.935 27.909 29.577 1.00 50.00 C ATOM 205 C GLN 24 31.692 27.668 31.042 1.00 50.00 C ATOM 206 O GLN 24 32.536 27.284 31.678 1.00 50.00 O ATOM 207 H GLN 24 30.523 29.462 29.566 1.00 50.00 H ATOM 208 CB GLN 24 33.261 28.624 29.308 1.00 50.00 C ATOM 209 CD GLN 24 34.879 29.553 27.606 1.00 50.00 C ATOM 210 CG GLN 24 33.559 28.843 27.834 1.00 50.00 C ATOM 211 OE1 GLN 24 35.257 30.441 28.371 1.00 50.00 O ATOM 212 HE21 GLN 24 36.376 29.553 26.370 1.00 50.00 H ATOM 213 HE22 GLN 24 35.272 28.510 26.017 1.00 50.00 H ATOM 214 NE2 GLN 24 35.585 29.164 26.551 1.00 50.00 N ATOM 215 N ALA 25 30.557 27.867 31.585 1.00 50.00 N ATOM 216 CA ALA 25 30.263 27.673 32.982 1.00 50.00 C ATOM 217 C ALA 25 30.032 26.259 33.480 1.00 50.00 C ATOM 218 O ALA 25 29.363 25.491 32.847 1.00 50.00 O ATOM 219 H ALA 25 29.912 28.150 31.024 1.00 50.00 H ATOM 220 CB ALA 25 29.028 28.468 33.378 1.00 50.00 C ATOM 221 N GLU 26 30.578 25.923 34.624 1.00 50.00 N ATOM 222 CA GLU 26 30.301 24.669 35.308 1.00 50.00 C ATOM 223 C GLU 26 29.060 24.802 36.170 1.00 50.00 C ATOM 224 O GLU 26 28.990 25.662 36.984 1.00 50.00 O ATOM 225 H GLU 26 31.151 26.516 34.986 1.00 50.00 H ATOM 226 CB GLU 26 31.501 24.245 36.158 1.00 50.00 C ATOM 227 CD GLU 26 32.538 22.517 37.678 1.00 50.00 C ATOM 228 CG GLU 26 31.323 22.912 36.864 1.00 50.00 C ATOM 229 OE1 GLU 26 33.578 23.199 37.565 1.00 50.00 O ATOM 230 OE2 GLU 26 32.452 21.523 38.430 1.00 50.00 O ATOM 231 N VAL 27 28.080 23.967 35.979 1.00 50.00 N ATOM 232 CA VAL 27 26.825 24.048 36.710 1.00 50.00 C ATOM 233 C VAL 27 26.741 22.942 37.752 1.00 50.00 C ATOM 234 O VAL 27 26.990 21.794 37.445 1.00 50.00 O ATOM 235 H VAL 27 28.202 23.320 35.365 1.00 50.00 H ATOM 236 CB VAL 27 25.613 23.974 35.763 1.00 50.00 C ATOM 237 CG1 VAL 27 25.641 22.680 34.963 1.00 50.00 C ATOM 238 CG2 VAL 27 24.315 24.093 36.547 1.00 50.00 C ATOM 239 N ARG 28 26.389 23.292 38.976 1.00 50.00 N ATOM 240 CA ARG 28 26.147 22.324 40.029 1.00 50.00 C ATOM 241 C ARG 28 24.640 22.566 40.089 1.00 50.00 C ATOM 242 O ARG 28 24.208 23.714 40.063 1.00 50.00 O ATOM 243 H ARG 28 26.300 24.171 39.143 1.00 50.00 H ATOM 244 CB ARG 28 26.980 22.661 41.267 1.00 50.00 C ATOM 245 CD ARG 28 29.244 22.854 42.334 1.00 50.00 C ATOM 246 HE ARG 28 31.106 23.466 41.904 1.00 50.00 H ATOM 247 NE ARG 28 30.690 22.752 42.146 1.00 50.00 N ATOM 248 CG ARG 28 28.480 22.514 41.064 1.00 50.00 C ATOM 249 CZ ARG 28 31.389 21.636 42.324 1.00 50.00 C ATOM 250 HH11 ARG 28 33.100 22.360 41.889 1.00 50.00 H ATOM 251 HH12 ARG 28 33.153 20.915 42.246 1.00 50.00 H ATOM 252 NH1 ARG 28 32.700 21.637 42.130 1.00 50.00 N ATOM 253 HH21 ARG 28 29.924 20.520 42.823 1.00 50.00 H ATOM 254 HH22 ARG 28 31.228 19.798 42.812 1.00 50.00 H ATOM 255 NH2 ARG 28 30.776 20.521 42.697 1.00 50.00 N ATOM 256 N ILE 29 23.854 21.502 40.150 1.00 50.00 N ATOM 257 CA ILE 29 22.420 21.608 40.207 1.00 50.00 C ATOM 258 C ILE 29 21.726 21.777 41.545 1.00 50.00 C ATOM 259 O ILE 29 22.174 21.253 42.535 1.00 50.00 O ATOM 260 H ILE 29 24.246 20.692 40.154 1.00 50.00 H ATOM 261 CB ILE 29 21.738 20.387 39.562 1.00 50.00 C ATOM 262 CD1 ILE 29 21.309 17.896 39.891 1.00 50.00 C ATOM 263 CG1 ILE 29 22.104 19.109 40.320 1.00 50.00 C ATOM 264 CG2 ILE 29 22.097 20.294 38.087 1.00 50.00 C ATOM 265 N ASP 30 20.633 22.516 41.556 1.00 50.00 N ATOM 266 CA ASP 30 19.844 22.722 42.769 1.00 50.00 C ATOM 267 C ASP 30 18.608 21.845 42.687 1.00 50.00 C ATOM 268 O ASP 30 18.076 21.457 43.685 1.00 50.00 O ATOM 269 H ASP 30 20.378 22.900 40.783 1.00 50.00 H ATOM 270 CB ASP 30 19.477 24.199 42.925 1.00 50.00 C ATOM 271 CG ASP 30 20.692 25.082 43.136 1.00 50.00 C ATOM 272 OD1 ASP 30 21.460 24.817 44.084 1.00 50.00 O ATOM 273 OD2 ASP 30 20.873 26.038 42.354 1.00 50.00 O ATOM 274 N GLY 31 18.137 21.543 41.502 1.00 50.00 N ATOM 275 CA GLY 31 16.966 20.729 41.290 1.00 50.00 C ATOM 276 C GLY 31 17.113 20.036 39.951 1.00 50.00 C ATOM 277 O GLY 31 17.881 20.449 39.130 1.00 50.00 O ATOM 278 H GLY 31 18.588 21.875 40.797 1.00 50.00 H ATOM 279 N PRO 32 16.361 18.982 39.724 1.00 50.00 N ATOM 280 CA PRO 32 16.355 18.299 38.433 1.00 50.00 C ATOM 281 C PRO 32 15.786 19.049 37.245 1.00 50.00 C ATOM 282 O PRO 32 14.646 19.375 37.217 1.00 50.00 O ATOM 283 CB PRO 32 15.504 17.052 38.677 1.00 50.00 C ATOM 284 CD PRO 32 15.413 18.373 40.671 1.00 50.00 C ATOM 285 CG PRO 32 14.618 17.422 39.820 1.00 50.00 C ATOM 286 N ILE 33 16.580 19.327 36.275 1.00 50.00 N ATOM 287 CA ILE 33 16.187 20.049 35.063 1.00 50.00 C ATOM 288 C ILE 33 16.069 19.047 33.933 1.00 50.00 C ATOM 289 O ILE 33 16.961 18.290 33.710 1.00 50.00 O ATOM 290 H ILE 33 17.430 19.047 36.376 1.00 50.00 H ATOM 291 CB ILE 33 17.189 21.168 34.722 1.00 50.00 C ATOM 292 CD1 ILE 33 16.038 22.791 36.315 1.00 50.00 C ATOM 293 CG1 ILE 33 17.334 22.131 35.902 1.00 50.00 C ATOM 294 CG2 ILE 33 16.769 21.889 33.450 1.00 50.00 C ATOM 295 N GLU 34 14.972 19.035 33.230 1.00 50.00 N ATOM 296 CA GLU 34 14.777 18.212 32.050 1.00 50.00 C ATOM 297 C GLU 34 15.464 18.745 30.805 1.00 50.00 C ATOM 298 O GLU 34 15.471 19.933 30.563 1.00 50.00 O ATOM 299 H GLU 34 14.312 19.578 33.514 1.00 50.00 H ATOM 300 CB GLU 34 13.286 18.050 31.750 1.00 50.00 C ATOM 301 CD GLU 34 11.496 16.930 30.363 1.00 50.00 C ATOM 302 CG GLU 34 12.985 17.111 30.593 1.00 50.00 C ATOM 303 OE1 GLU 34 10.702 17.573 31.081 1.00 50.00 O ATOM 304 OE2 GLU 34 11.126 16.146 29.463 1.00 50.00 O ATOM 305 N TYR 35 16.046 17.866 30.016 1.00 50.00 N ATOM 306 CA TYR 35 16.731 18.236 28.791 1.00 50.00 C ATOM 307 C TYR 35 16.234 17.556 27.532 1.00 50.00 C ATOM 308 O TYR 35 15.602 16.533 27.590 1.00 50.00 O ATOM 309 H TYR 35 16.005 17.002 30.265 1.00 50.00 H ATOM 310 CB TYR 35 18.230 17.954 28.909 1.00 50.00 C ATOM 311 CG TYR 35 18.568 16.486 29.048 1.00 50.00 C ATOM 312 HH TYR 35 19.614 12.125 28.660 1.00 50.00 H ATOM 313 OH TYR 35 19.498 12.451 29.415 1.00 50.00 O ATOM 314 CZ TYR 35 19.190 13.786 29.295 1.00 50.00 C ATOM 315 CD1 TYR 35 18.812 15.703 27.928 1.00 50.00 C ATOM 316 CE1 TYR 35 19.122 14.362 28.045 1.00 50.00 C ATOM 317 CD2 TYR 35 18.641 15.889 30.300 1.00 50.00 C ATOM 318 CE2 TYR 35 18.948 14.549 30.437 1.00 50.00 C ATOM 319 N GLY 36 16.527 18.142 26.395 1.00 50.00 N ATOM 320 CA GLY 36 16.259 17.590 25.077 1.00 50.00 C ATOM 321 C GLY 36 17.566 17.508 24.306 1.00 50.00 C ATOM 322 O GLY 36 18.500 18.214 24.613 1.00 50.00 O ATOM 323 H GLY 36 16.925 18.945 26.474 1.00 50.00 H ATOM 324 N VAL 37 17.635 16.647 23.313 1.00 50.00 N ATOM 325 CA VAL 37 18.911 16.519 22.575 1.00 50.00 C ATOM 326 C VAL 37 19.097 17.480 21.412 1.00 50.00 C ATOM 327 O VAL 37 18.168 17.746 20.683 1.00 50.00 O ATOM 328 H VAL 37 16.928 16.143 23.079 1.00 50.00 H ATOM 329 CB VAL 37 19.104 15.094 22.025 1.00 50.00 C ATOM 330 CG1 VAL 37 20.372 15.014 21.189 1.00 50.00 C ATOM 331 CG2 VAL 37 19.146 14.085 23.162 1.00 50.00 C ATOM 332 N PHE 38 20.295 17.999 21.252 1.00 50.00 N ATOM 333 CA PHE 38 20.649 18.857 20.135 1.00 50.00 C ATOM 334 C PHE 38 21.907 18.319 19.480 1.00 50.00 C ATOM 335 O PHE 38 22.903 18.151 20.123 1.00 50.00 O ATOM 336 H PHE 38 20.909 17.800 21.879 1.00 50.00 H ATOM 337 CB PHE 38 20.843 20.300 20.607 1.00 50.00 C ATOM 338 CG PHE 38 19.612 20.909 21.216 1.00 50.00 C ATOM 339 CZ PHE 38 17.334 22.040 22.335 1.00 50.00 C ATOM 340 CD1 PHE 38 19.330 20.739 22.560 1.00 50.00 C ATOM 341 CE1 PHE 38 18.198 21.300 23.120 1.00 50.00 C ATOM 342 CD2 PHE 38 18.737 21.652 20.444 1.00 50.00 C ATOM 343 CE2 PHE 38 17.606 22.213 21.004 1.00 50.00 C ATOM 344 N GLU 39 21.847 18.042 18.208 1.00 50.00 N ATOM 345 CA GLU 39 22.999 17.586 17.433 1.00 50.00 C ATOM 346 C GLU 39 23.084 18.450 16.191 1.00 50.00 C ATOM 347 O GLU 39 22.106 18.633 15.505 1.00 50.00 O ATOM 348 H GLU 39 21.048 18.144 17.808 1.00 50.00 H ATOM 349 CB GLU 39 22.860 16.101 17.089 1.00 50.00 C ATOM 350 CD GLU 39 23.897 14.043 16.057 1.00 50.00 C ATOM 351 CG GLU 39 24.041 15.528 16.325 1.00 50.00 C ATOM 352 OE1 GLU 39 22.918 13.443 16.548 1.00 50.00 O ATOM 353 OE2 GLU 39 24.763 13.479 15.357 1.00 50.00 O ATOM 354 N SER 40 24.250 18.989 15.905 1.00 50.00 N ATOM 355 CA SER 40 24.481 19.769 14.699 1.00 50.00 C ATOM 356 C SER 40 25.895 19.552 14.199 1.00 50.00 C ATOM 357 O SER 40 26.723 19.058 14.908 1.00 50.00 O ATOM 358 H SER 40 24.921 18.860 16.492 1.00 50.00 H ATOM 359 CB SER 40 24.225 21.254 14.964 1.00 50.00 C ATOM 360 HG SER 40 25.942 21.698 15.540 1.00 50.00 H ATOM 361 OG SER 40 25.183 21.784 15.863 1.00 50.00 O ATOM 538 N GLN 57 30.017 10.573 20.610 1.00 50.00 N ATOM 539 CA GLN 57 31.378 10.913 20.285 1.00 50.00 C ATOM 540 C GLN 57 32.074 11.492 21.499 1.00 50.00 C ATOM 541 O GLN 57 31.440 12.035 22.363 1.00 50.00 O ATOM 542 H GLN 57 29.547 11.089 21.178 1.00 50.00 H ATOM 543 CB GLN 57 31.418 11.903 19.118 1.00 50.00 C ATOM 544 CD GLN 57 30.934 12.351 16.680 1.00 50.00 C ATOM 545 CG GLN 57 30.853 11.353 17.818 1.00 50.00 C ATOM 546 OE1 GLN 57 31.184 13.536 16.897 1.00 50.00 O ATOM 547 HE21 GLN 57 30.759 12.422 14.748 1.00 50.00 H ATOM 548 HE22 GLN 57 30.543 10.998 15.344 1.00 50.00 H ATOM 549 NE2 GLN 57 30.723 11.872 15.459 1.00 50.00 N ATOM 550 N ASN 58 33.381 11.365 21.563 1.00 50.00 N ATOM 551 CA ASN 58 34.118 11.933 22.712 1.00 50.00 C ATOM 552 C ASN 58 34.383 13.379 22.318 1.00 50.00 C ATOM 553 O ASN 58 34.773 13.655 21.211 1.00 50.00 O ATOM 554 H ASN 58 33.827 10.933 20.912 1.00 50.00 H ATOM 555 CB ASN 58 35.382 11.120 22.993 1.00 50.00 C ATOM 556 CG ASN 58 35.076 9.717 23.479 1.00 50.00 C ATOM 557 OD1 ASN 58 34.262 9.526 24.383 1.00 50.00 O ATOM 558 HD21 ASN 58 35.585 7.876 23.131 1.00 50.00 H ATOM 559 HD22 ASN 58 36.317 8.911 22.224 1.00 50.00 H ATOM 560 ND2 ASN 58 35.730 8.729 22.880 1.00 50.00 N ATOM 561 N ILE 59 34.172 14.311 23.218 1.00 50.00 N ATOM 562 CA ILE 59 34.369 15.721 22.888 1.00 50.00 C ATOM 563 C ILE 59 35.765 16.287 23.045 1.00 50.00 C ATOM 564 O ILE 59 36.246 16.437 24.137 1.00 50.00 O ATOM 565 H ILE 59 33.905 14.076 24.044 1.00 50.00 H ATOM 566 CB ILE 59 33.441 16.628 23.717 1.00 50.00 C ATOM 567 CD1 ILE 59 31.509 16.284 22.090 1.00 50.00 C ATOM 568 CG1 ILE 59 31.981 16.215 23.526 1.00 50.00 C ATOM 569 CG2 ILE 59 33.668 18.089 23.359 1.00 50.00 C ATOM 570 N GLN 60 36.422 16.620 21.964 1.00 50.00 N ATOM 571 CA GLN 60 37.684 17.375 22.043 1.00 50.00 C ATOM 572 C GLN 60 37.402 18.754 22.581 1.00 50.00 C ATOM 573 O GLN 60 38.258 19.396 23.086 1.00 50.00 O ATOM 574 H GLN 60 36.091 16.379 21.162 1.00 50.00 H ATOM 575 CB GLN 60 38.354 17.445 20.669 1.00 50.00 C ATOM 576 CD GLN 60 39.503 16.213 18.788 1.00 50.00 C ATOM 577 CG GLN 60 38.871 16.109 20.162 1.00 50.00 C ATOM 578 OE1 GLN 60 39.121 17.060 17.981 1.00 50.00 O ATOM 579 HE21 GLN 60 40.885 15.367 17.719 1.00 50.00 H ATOM 580 HE22 GLN 60 40.725 14.746 19.138 1.00 50.00 H ATOM 581 NE2 GLN 60 40.476 15.349 18.520 1.00 50.00 N ATOM 582 N GLN 61 36.194 19.199 22.478 1.00 50.00 N ATOM 583 CA GLN 61 35.880 20.605 22.915 1.00 50.00 C ATOM 584 C GLN 61 34.419 20.304 23.188 1.00 50.00 C ATOM 585 O GLN 61 33.683 20.058 22.283 1.00 50.00 O ATOM 586 H GLN 61 35.541 18.675 22.148 1.00 50.00 H ATOM 587 CB GLN 61 36.228 21.600 21.806 1.00 50.00 C ATOM 588 CD GLN 61 36.743 23.561 23.313 1.00 50.00 C ATOM 589 CG GLN 61 35.916 23.047 22.151 1.00 50.00 C ATOM 590 OE1 GLN 61 37.971 23.594 23.246 1.00 50.00 O ATOM 591 HE21 GLN 61 36.513 24.277 25.103 1.00 50.00 H ATOM 592 HE22 GLN 61 35.171 23.922 24.394 1.00 50.00 H ATOM 593 NE2 GLN 61 36.070 23.963 24.385 1.00 50.00 N ATOM 594 N THR 62 34.013 20.298 24.427 1.00 50.00 N ATOM 595 CA THR 62 32.631 20.082 24.815 1.00 50.00 C ATOM 596 C THR 62 31.902 21.413 24.787 1.00 50.00 C ATOM 597 O THR 62 32.431 22.409 25.191 1.00 50.00 O ATOM 598 H THR 62 34.640 20.438 25.057 1.00 50.00 H ATOM 599 CB THR 62 32.532 19.437 26.211 1.00 50.00 C ATOM 600 HG1 THR 62 30.822 18.694 25.970 1.00 50.00 H ATOM 601 OG1 THR 62 31.155 19.203 26.535 1.00 50.00 O ATOM 602 CG2 THR 62 33.131 20.355 27.265 1.00 50.00 C ATOM 603 N THR 63 30.685 21.431 24.307 1.00 50.00 N ATOM 604 CA THR 63 29.883 22.641 24.238 1.00 50.00 C ATOM 605 C THR 63 28.943 22.888 25.406 1.00 50.00 C ATOM 606 O THR 63 28.267 21.983 25.855 1.00 50.00 O ATOM 607 H THR 63 30.347 20.650 24.012 1.00 50.00 H ATOM 608 CB THR 63 29.017 22.672 22.964 1.00 50.00 C ATOM 609 HG1 THR 63 27.675 21.559 22.263 1.00 50.00 H ATOM 610 OG1 THR 63 28.140 21.539 22.951 1.00 50.00 O ATOM 611 CG2 THR 63 29.895 22.623 21.723 1.00 50.00 C ATOM 612 N GLU 64 28.914 24.112 25.891 1.00 50.00 N ATOM 613 CA GLU 64 28.012 24.530 26.954 1.00 50.00 C ATOM 614 C GLU 64 27.263 25.716 26.355 1.00 50.00 C ATOM 615 O GLU 64 27.782 26.380 25.481 1.00 50.00 O ATOM 616 H GLU 64 29.490 24.703 25.531 1.00 50.00 H ATOM 617 CB GLU 64 28.799 24.871 28.221 1.00 50.00 C ATOM 618 CD GLU 64 30.301 24.064 30.085 1.00 50.00 C ATOM 619 CG GLU 64 29.545 23.692 28.824 1.00 50.00 C ATOM 620 OE1 GLU 64 31.321 24.777 29.978 1.00 50.00 O ATOM 621 OE2 GLU 64 29.872 23.644 31.180 1.00 50.00 O ATOM 622 N VAL 65 26.051 25.964 26.811 1.00 50.00 N ATOM 623 CA VAL 65 25.261 27.057 26.259 1.00 50.00 C ATOM 624 C VAL 65 24.620 28.049 27.205 1.00 50.00 C ATOM 625 O VAL 65 24.560 27.826 28.394 1.00 50.00 O ATOM 626 H VAL 65 25.711 25.451 27.468 1.00 50.00 H ATOM 627 CB VAL 65 24.110 26.534 25.379 1.00 50.00 C ATOM 628 CG1 VAL 65 24.657 25.733 24.208 1.00 50.00 C ATOM 629 CG2 VAL 65 23.150 25.691 26.204 1.00 50.00 C ATOM 630 N PRO 66 24.140 29.148 26.652 1.00 50.00 N ATOM 631 CA PRO 66 23.253 30.142 27.204 1.00 50.00 C ATOM 632 C PRO 66 21.889 29.655 26.694 1.00 50.00 C ATOM 633 O PRO 66 21.789 29.010 25.661 1.00 50.00 O ATOM 634 CB PRO 66 23.748 31.457 26.597 1.00 50.00 C ATOM 635 CD PRO 66 24.909 29.713 25.438 1.00 50.00 C ATOM 636 CG PRO 66 24.290 31.072 25.262 1.00 50.00 C ATOM 637 N ALA 67 20.830 29.946 27.421 1.00 50.00 N ATOM 638 CA ALA 67 19.530 29.401 27.033 1.00 50.00 C ATOM 639 C ALA 67 19.151 29.795 25.612 1.00 50.00 C ATOM 640 O ALA 67 19.987 30.388 24.905 1.00 50.00 O ATOM 641 H ALA 67 20.898 30.472 28.149 1.00 50.00 H ATOM 642 CB ALA 67 18.450 29.865 28.000 1.00 50.00 C ATOM 643 N LYS 68 17.932 29.505 25.157 1.00 50.00 N ATOM 644 CA LYS 68 17.533 29.791 23.823 1.00 50.00 C ATOM 645 C LYS 68 17.903 28.635 22.940 1.00 50.00 C ATOM 646 O LYS 68 17.121 28.141 22.308 1.00 50.00 O ATOM 647 H LYS 68 17.354 29.114 25.725 1.00 50.00 H ATOM 648 CB LYS 68 18.182 31.088 23.336 1.00 50.00 C ATOM 649 CD LYS 68 18.388 33.581 23.534 1.00 50.00 C ATOM 650 CE LYS 68 17.969 34.817 24.313 1.00 50.00 C ATOM 651 CG LYS 68 17.738 32.328 24.095 1.00 50.00 C ATOM 652 HZ1 LYS 68 18.372 36.749 24.285 1.00 50.00 H ATOM 653 HZ2 LYS 68 18.426 36.171 22.952 1.00 50.00 H ATOM 654 HZ3 LYS 68 19.522 35.957 23.883 1.00 50.00 H ATOM 655 NZ LYS 68 18.639 36.047 23.808 1.00 50.00 N ATOM 656 N LEU 69 19.082 28.200 22.889 1.00 50.00 N ATOM 657 CA LEU 69 19.566 27.090 22.088 1.00 50.00 C ATOM 658 C LEU 69 20.457 26.372 23.059 1.00 50.00 C ATOM 659 O LEU 69 21.458 26.593 23.103 1.00 50.00 O ATOM 660 H LEU 69 19.650 28.653 23.419 1.00 50.00 H ATOM 661 CB LEU 69 20.268 27.604 20.830 1.00 50.00 C ATOM 662 CG LEU 69 20.846 26.539 19.895 1.00 50.00 C ATOM 663 CD1 LEU 69 19.740 25.662 19.328 1.00 50.00 C ATOM 664 CD2 LEU 69 21.637 27.186 18.768 1.00 50.00 C ATOM 665 N GLY 70 20.084 25.510 23.849 1.00 50.00 N ATOM 666 CA GLY 70 20.787 24.823 24.882 1.00 50.00 C ATOM 667 C GLY 70 19.757 25.640 25.558 1.00 50.00 C ATOM 668 O GLY 70 19.516 25.746 26.457 1.00 50.00 O ATOM 669 H GLY 70 19.216 25.328 23.697 1.00 50.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 237 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.44 71.4 35 14.9 235 ARMSMC SECONDARY STRUCTURE . . 40.10 70.0 10 8.7 115 ARMSMC SURFACE . . . . . . . . 60.72 74.1 27 17.3 156 ARMSMC BURIED . . . . . . . . 44.62 62.5 8 10.1 79 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.72 46.2 13 14.1 92 ARMSSC1 RELIABLE SIDE CHAINS . 80.02 45.5 11 13.4 82 ARMSSC1 SECONDARY STRUCTURE . . 59.29 75.0 4 7.8 51 ARMSSC1 SURFACE . . . . . . . . 83.81 40.0 10 16.7 60 ARMSSC1 BURIED . . . . . . . . 69.42 66.7 3 9.4 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.30 70.0 10 16.7 60 ARMSSC2 RELIABLE SIDE CHAINS . 66.30 70.0 10 19.6 51 ARMSSC2 SECONDARY STRUCTURE . . 12.89 100.0 3 8.8 34 ARMSSC2 SURFACE . . . . . . . . 69.52 66.7 9 23.7 38 ARMSSC2 BURIED . . . . . . . . 21.42 100.0 1 4.5 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.77 0.0 3 15.8 19 ARMSSC3 RELIABLE SIDE CHAINS . 59.25 0.0 2 13.3 15 ARMSSC3 SECONDARY STRUCTURE . . 77.39 0.0 1 8.3 12 ARMSSC3 SURFACE . . . . . . . . 82.77 0.0 3 23.1 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 3 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.24 (Number of atoms: 32) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.24 32 26.7 120 CRMSCA CRN = ALL/NP . . . . . 0.4138 CRMSCA SECONDARY STRUCTURE . . 9.70 8 13.6 59 CRMSCA SURFACE . . . . . . . . 13.96 25 31.6 79 CRMSCA BURIED . . . . . . . . 10.26 7 17.1 41 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.14 157 26.7 589 CRMSMC SECONDARY STRUCTURE . . 9.44 39 13.4 291 CRMSMC SURFACE . . . . . . . . 13.83 123 31.8 387 CRMSMC BURIED . . . . . . . . 10.28 34 16.8 202 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.54 109 23.5 464 CRMSSC RELIABLE SIDE CHAINS . 13.30 91 23.3 390 CRMSSC SECONDARY STRUCTURE . . 10.87 37 14.0 264 CRMSSC SURFACE . . . . . . . . 14.51 88 30.1 292 CRMSSC BURIED . . . . . . . . 8.35 21 12.2 172 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.23 237 25.1 944 CRMSALL SECONDARY STRUCTURE . . 10.22 69 13.8 500 CRMSALL SURFACE . . . . . . . . 14.04 188 30.9 608 CRMSALL BURIED . . . . . . . . 9.50 49 14.6 336 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 38.329 0.637 0.687 32 26.7 120 ERRCA SECONDARY STRUCTURE . . 41.007 0.702 0.745 8 13.6 59 ERRCA SURFACE . . . . . . . . 37.710 0.622 0.674 25 31.6 79 ERRCA BURIED . . . . . . . . 40.539 0.690 0.736 7 17.1 41 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 38.402 0.638 0.690 157 26.7 589 ERRMC SECONDARY STRUCTURE . . 41.317 0.711 0.752 39 13.4 291 ERRMC SURFACE . . . . . . . . 37.796 0.624 0.676 123 31.8 387 ERRMC BURIED . . . . . . . . 40.593 0.692 0.738 34 16.8 202 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 38.104 0.632 0.684 109 23.5 464 ERRSC RELIABLE SIDE CHAINS . 38.274 0.636 0.689 91 23.3 390 ERRSC SECONDARY STRUCTURE . . 40.057 0.677 0.727 37 14.0 264 ERRSC SURFACE . . . . . . . . 37.076 0.605 0.662 88 30.1 292 ERRSC BURIED . . . . . . . . 42.411 0.743 0.776 21 12.2 172 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 38.328 0.637 0.688 237 25.1 944 ERRALL SECONDARY STRUCTURE . . 40.660 0.694 0.739 69 13.8 500 ERRALL SURFACE . . . . . . . . 37.541 0.617 0.672 188 30.9 608 ERRALL BURIED . . . . . . . . 41.347 0.713 0.753 49 14.6 336 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 5 12 32 120 DISTCA CA (P) 0.00 0.83 0.83 4.17 10.00 120 DISTCA CA (RMS) 0.00 1.61 1.61 4.05 6.85 DISTCA ALL (N) 0 3 15 31 94 237 944 DISTALL ALL (P) 0.00 0.32 1.59 3.28 9.96 944 DISTALL ALL (RMS) 0.00 1.62 2.51 3.57 6.87 DISTALL END of the results output