####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 28 ( 264), selected 28 , name T0568TS060_1_1-D1 # Molecule2: number of CA atoms 120 ( 944), selected 28 , name T0568-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0568TS060_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 26 - 40 4.56 16.01 LCS_AVERAGE: 10.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 33 - 40 1.44 16.91 LCS_AVERAGE: 5.98 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 34 - 40 0.62 17.44 LCS_AVERAGE: 3.75 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 28 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 23 A 23 4 7 9 3 4 4 5 6 7 7 7 7 8 8 8 8 9 9 9 9 9 9 9 LCS_GDT Q 24 Q 24 4 7 9 3 4 4 5 6 7 7 7 7 8 8 8 8 9 9 9 9 9 9 9 LCS_GDT A 25 A 25 4 7 9 3 4 4 5 6 7 7 7 7 8 8 8 8 9 9 9 10 10 12 12 LCS_GDT E 26 E 26 4 7 15 3 4 4 5 6 7 7 7 7 8 8 8 10 11 13 15 15 15 15 16 LCS_GDT V 27 V 27 3 7 15 3 3 4 5 6 7 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT R 28 R 28 3 7 15 3 3 4 5 6 7 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT I 29 I 29 3 7 15 3 3 3 4 5 7 7 8 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT D 30 D 30 3 7 15 3 3 5 5 6 7 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT G 31 G 31 3 7 15 3 3 5 5 6 7 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT P 32 P 32 4 7 15 3 3 5 5 6 7 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT I 33 I 33 4 8 15 3 3 5 6 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT E 34 E 34 7 8 15 3 5 7 7 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT Y 35 Y 35 7 8 15 6 6 7 7 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT G 36 G 36 7 8 15 6 6 7 7 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT V 37 V 37 7 8 15 6 6 7 7 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT F 38 F 38 7 8 15 6 6 7 7 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT E 39 E 39 7 8 15 6 6 7 7 7 8 8 8 10 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT S 40 S 40 7 8 15 6 6 7 7 7 8 8 8 9 13 14 14 14 14 14 15 15 15 16 17 LCS_GDT Q 57 Q 57 3 7 11 3 3 3 5 6 7 7 8 9 11 11 11 12 12 14 15 15 15 16 17 LCS_GDT N 58 N 58 4 7 11 3 3 4 5 6 7 7 8 9 9 10 10 12 12 14 15 15 15 16 17 LCS_GDT I 59 I 59 4 7 11 3 3 4 5 5 6 7 8 9 9 10 10 12 12 14 15 15 15 16 17 LCS_GDT Q 60 Q 60 4 7 11 3 3 4 5 6 7 7 8 9 9 10 10 12 12 14 15 15 15 16 17 LCS_GDT Q 61 Q 61 4 7 11 3 3 4 5 6 7 7 8 9 9 10 10 12 13 14 15 15 15 16 17 LCS_GDT T 62 T 62 3 7 11 3 3 4 5 6 7 7 8 9 9 10 10 12 13 14 14 15 15 16 17 LCS_GDT T 63 T 63 4 7 11 3 4 4 5 6 7 7 8 9 9 10 10 12 13 14 14 15 15 16 17 LCS_GDT E 64 E 64 4 6 11 3 4 4 4 5 7 7 8 9 9 10 10 11 12 12 13 15 15 16 17 LCS_GDT V 65 V 65 4 6 11 3 4 4 4 5 6 6 7 9 9 9 10 11 12 12 13 15 15 16 17 LCS_GDT P 66 P 66 4 6 11 3 4 4 4 5 6 6 6 6 8 8 10 10 12 12 13 15 15 15 17 LCS_AVERAGE LCS_A: 6.84 ( 3.75 5.98 10.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 7 7 7 8 9 10 11 13 14 14 14 14 14 15 15 15 16 17 GDT PERCENT_AT 5.00 5.00 5.83 5.83 5.83 6.67 7.50 8.33 9.17 10.83 11.67 11.67 11.67 11.67 11.67 12.50 12.50 12.50 13.33 14.17 GDT RMS_LOCAL 0.37 0.37 0.62 0.62 0.62 1.44 2.35 2.84 3.03 3.57 3.72 3.72 3.72 3.72 3.72 4.56 4.56 4.56 6.08 6.95 GDT RMS_ALL_AT 17.59 17.59 17.44 17.44 17.44 16.91 16.23 15.91 15.88 15.84 15.79 15.79 15.79 15.79 15.79 16.01 16.01 16.01 12.88 15.90 # Checking swapping # possible swapping detected: E 34 E 34 # possible swapping detected: Y 35 Y 35 # possible swapping detected: E 64 E 64 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 23 A 23 27.658 0 0.071 0.099 28.734 0.000 0.000 LGA Q 24 Q 24 22.407 0 0.133 0.524 24.598 0.000 0.000 LGA A 25 A 25 16.185 0 0.086 0.103 18.284 0.000 0.000 LGA E 26 E 26 10.313 4 0.133 0.188 12.327 5.000 2.222 LGA V 27 V 27 3.760 0 0.297 1.009 6.186 32.500 35.374 LGA R 28 R 28 3.127 4 0.606 0.536 3.821 50.119 35.931 LGA I 29 I 29 5.323 0 0.605 0.582 10.881 33.095 17.857 LGA D 30 D 30 3.568 0 0.035 0.507 8.948 50.119 32.262 LGA G 31 G 31 3.121 0 0.566 0.566 3.469 53.690 53.690 LGA P 32 P 32 4.800 0 0.142 0.244 7.384 35.833 26.259 LGA I 33 I 33 1.779 0 0.074 0.199 2.508 72.976 75.298 LGA E 34 E 34 2.723 0 0.039 0.599 4.220 57.143 48.942 LGA Y 35 Y 35 2.292 0 0.148 1.266 8.436 73.095 45.278 LGA G 36 G 36 1.335 0 0.105 0.105 1.604 81.548 81.548 LGA V 37 V 37 2.601 0 0.063 0.085 3.888 57.262 52.245 LGA F 38 F 38 3.145 0 0.079 0.426 4.511 43.929 58.788 LGA E 39 E 39 6.247 0 0.169 0.299 10.005 21.667 11.429 LGA S 40 S 40 7.100 0 0.555 0.753 10.371 5.357 4.444 LGA Q 57 Q 57 18.248 0 0.104 0.995 19.635 0.000 0.000 LGA N 58 N 58 20.152 0 0.620 0.777 23.292 0.000 0.000 LGA I 59 I 59 16.518 0 0.032 0.056 17.336 0.000 0.000 LGA Q 60 Q 60 19.131 0 0.055 1.177 23.836 0.000 0.000 LGA Q 61 Q 61 20.280 0 0.166 0.866 25.843 0.000 0.000 LGA T 62 T 62 20.811 0 0.042 1.107 23.852 0.000 0.000 LGA T 63 T 63 21.565 0 0.674 1.419 24.366 0.000 0.000 LGA E 64 E 64 27.025 0 0.193 1.023 30.113 0.000 0.000 LGA V 65 V 65 26.925 0 0.155 0.210 30.623 0.000 0.000 LGA P 66 P 66 33.007 0 0.067 0.221 33.513 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 28 112 112 100.00 211 211 100.00 120 SUMMARY(RMSD_GDC): 12.291 12.102 12.253 5.611 4.846 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 28 120 4.0 10 2.84 7.917 7.654 0.340 LGA_LOCAL RMSD: 2.840 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.912 Number of assigned atoms: 28 Std_ASGN_ATOMS RMSD: 12.291 Standard rmsd on all 28 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.694239 * X + -0.011471 * Y + 0.719653 * Z + -102.794685 Y_new = -0.154778 * X + -0.978859 * Y + 0.133710 * Z + 82.174973 Z_new = 0.702905 * X + -0.204213 * Y + -0.681338 * Z + 96.048996 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.219358 -0.779474 -2.850390 [DEG: -12.5683 -44.6606 -163.3153 ] ZXZ: 1.754499 2.320385 1.853539 [DEG: 100.5254 132.9483 106.2000 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0568TS060_1_1-D1 REMARK 2: T0568-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0568TS060_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 28 120 4.0 10 2.84 7.654 12.29 REMARK ---------------------------------------------------------- MOLECULE T0568TS060_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0568 REMARK PARENT 2PN5A ATOM 197 N ALA 23 20.197 13.337 30.846 1.00 50.00 N ATOM 198 CA ALA 23 21.333 13.351 31.708 1.00 50.00 C ATOM 199 C ALA 23 20.921 13.925 33.014 1.00 50.00 C ATOM 200 O ALA 23 20.288 14.977 33.075 1.00 50.00 O ATOM 201 H ALA 23 19.679 14.070 30.772 1.00 50.00 H ATOM 202 CB ALA 23 22.465 14.148 31.078 1.00 50.00 C ATOM 203 N GLN 24 21.270 13.237 34.114 1.00 50.00 N ATOM 204 CA GLN 24 20.946 13.834 35.371 1.00 50.00 C ATOM 205 C GLN 24 22.242 14.143 36.025 1.00 50.00 C ATOM 206 O GLN 24 22.954 13.240 36.457 1.00 50.00 O ATOM 207 H GLN 24 21.687 12.440 34.089 1.00 50.00 H ATOM 208 CB GLN 24 20.073 12.892 36.202 1.00 50.00 C ATOM 209 CD GLN 24 18.711 12.539 38.299 1.00 50.00 C ATOM 210 CG GLN 24 19.628 13.473 37.534 1.00 50.00 C ATOM 211 OE1 GLN 24 18.628 11.349 37.997 1.00 50.00 O ATOM 212 HE21 GLN 24 17.457 12.568 39.782 1.00 50.00 H ATOM 213 HE22 GLN 24 18.106 13.954 39.484 1.00 50.00 H ATOM 214 NE2 GLN 24 18.017 13.078 39.295 1.00 50.00 N ATOM 215 N ALA 25 22.588 15.442 36.082 1.00 50.00 N ATOM 216 CA ALA 25 23.778 15.849 36.766 1.00 50.00 C ATOM 217 C ALA 25 23.295 16.639 37.937 1.00 50.00 C ATOM 218 O ALA 25 22.524 17.583 37.755 1.00 50.00 O ATOM 219 H ALA 25 22.063 16.057 35.685 1.00 50.00 H ATOM 220 CB ALA 25 24.680 16.642 35.833 1.00 50.00 C ATOM 221 N GLU 26 23.728 16.291 39.176 1.00 50.00 N ATOM 222 CA GLU 26 23.180 17.049 40.267 1.00 50.00 C ATOM 223 C GLU 26 24.125 17.217 41.435 1.00 50.00 C ATOM 224 O GLU 26 25.201 16.628 41.492 1.00 50.00 O ATOM 225 H GLU 26 24.320 15.632 39.338 1.00 50.00 H ATOM 226 CB GLU 26 21.890 16.402 40.775 1.00 50.00 C ATOM 227 CD GLU 26 20.770 14.366 41.766 1.00 50.00 C ATOM 228 CG GLU 26 22.077 15.002 41.338 1.00 50.00 C ATOM 229 OE1 GLU 26 19.729 15.054 41.711 1.00 50.00 O ATOM 230 OE2 GLU 26 20.786 13.179 42.156 1.00 50.00 O ATOM 231 N VAL 27 23.683 18.107 42.361 1.00 50.00 N ATOM 232 CA VAL 27 24.197 18.619 43.606 1.00 50.00 C ATOM 233 C VAL 27 23.002 19.409 44.033 1.00 50.00 C ATOM 234 O VAL 27 22.001 19.386 43.325 1.00 50.00 O ATOM 235 H VAL 27 22.887 18.391 42.051 1.00 50.00 H ATOM 236 CB VAL 27 25.500 19.412 43.395 1.00 50.00 C ATOM 237 CG1 VAL 27 25.248 20.627 42.516 1.00 50.00 C ATOM 238 CG2 VAL 27 26.092 19.830 44.733 1.00 50.00 C ATOM 239 N ARG 28 22.990 20.106 45.182 1.00 50.00 N ATOM 240 CA ARG 28 21.797 20.874 45.376 1.00 50.00 C ATOM 241 C ARG 28 21.794 21.966 44.342 1.00 50.00 C ATOM 242 O ARG 28 20.748 22.322 43.799 1.00 50.00 O ATOM 243 H ARG 28 23.642 20.122 45.803 1.00 50.00 H ATOM 244 CB ARG 28 21.743 21.430 46.800 1.00 50.00 C ATOM 245 CD ARG 28 21.527 20.988 49.261 1.00 50.00 C ATOM 246 HE ARG 28 21.075 19.196 50.041 1.00 50.00 H ATOM 247 NE ARG 28 21.287 19.989 50.300 1.00 50.00 N ATOM 248 CG ARG 28 21.513 20.375 47.869 1.00 50.00 C ATOM 249 CZ ARG 28 21.373 20.233 51.605 1.00 50.00 C ATOM 250 HH11 ARG 28 20.927 18.477 52.199 1.00 50.00 H ATOM 251 HH12 ARG 28 21.192 19.422 53.321 1.00 50.00 H ATOM 252 NH1 ARG 28 21.136 19.263 52.477 1.00 50.00 N ATOM 253 HH21 ARG 28 21.849 22.075 51.466 1.00 50.00 H ATOM 254 HH22 ARG 28 21.752 21.604 52.875 1.00 50.00 H ATOM 255 NH2 ARG 28 21.696 21.446 52.032 1.00 50.00 N ATOM 256 N ILE 29 22.992 22.523 44.062 1.00 50.00 N ATOM 257 CA ILE 29 23.248 23.616 43.156 1.00 50.00 C ATOM 258 C ILE 29 22.992 23.263 41.716 1.00 50.00 C ATOM 259 O ILE 29 22.379 24.051 40.994 1.00 50.00 O ATOM 260 H ILE 29 23.672 22.142 44.511 1.00 50.00 H ATOM 261 CB ILE 29 24.693 24.131 43.288 1.00 50.00 C ATOM 262 CD1 ILE 29 24.018 25.843 45.052 1.00 50.00 C ATOM 263 CG1 ILE 29 24.933 24.694 44.691 1.00 50.00 C ATOM 264 CG2 ILE 29 24.994 25.157 42.207 1.00 50.00 C ATOM 265 N ASP 30 23.456 22.077 41.259 1.00 50.00 N ATOM 266 CA ASP 30 23.374 21.701 39.872 1.00 50.00 C ATOM 267 C ASP 30 22.000 21.184 39.596 1.00 50.00 C ATOM 268 O ASP 30 21.650 20.067 39.969 1.00 50.00 O ATOM 269 H ASP 30 23.827 21.515 41.856 1.00 50.00 H ATOM 270 CB ASP 30 24.440 20.658 39.535 1.00 50.00 C ATOM 271 CG ASP 30 24.427 20.262 38.072 1.00 50.00 C ATOM 272 OD1 ASP 30 23.446 20.595 37.375 1.00 50.00 O ATOM 273 OD2 ASP 30 25.399 19.620 37.621 1.00 50.00 O ATOM 274 N GLY 31 21.162 22.024 38.973 1.00 50.00 N ATOM 275 CA GLY 31 19.821 21.683 38.598 1.00 50.00 C ATOM 276 C GLY 31 19.663 20.732 37.434 1.00 50.00 C ATOM 277 O GLY 31 18.790 19.872 37.535 1.00 50.00 O ATOM 278 H GLY 31 21.486 22.844 38.792 1.00 50.00 H ATOM 279 N PRO 32 20.404 20.799 36.340 1.00 50.00 N ATOM 280 CA PRO 32 20.030 20.089 35.143 1.00 50.00 C ATOM 281 C PRO 32 19.671 18.640 35.249 1.00 50.00 C ATOM 282 O PRO 32 20.514 17.818 35.607 1.00 50.00 O ATOM 283 CB PRO 32 21.260 20.210 34.241 1.00 50.00 C ATOM 284 CD PRO 32 21.761 21.545 36.164 1.00 50.00 C ATOM 285 CG PRO 32 21.914 21.481 34.669 1.00 50.00 C ATOM 286 N ILE 33 18.404 18.326 34.916 1.00 50.00 N ATOM 287 CA ILE 33 17.912 16.992 34.756 1.00 50.00 C ATOM 288 C ILE 33 17.071 17.124 33.540 1.00 50.00 C ATOM 289 O ILE 33 16.149 17.939 33.524 1.00 50.00 O ATOM 290 H ILE 33 17.852 19.026 34.792 1.00 50.00 H ATOM 291 CB ILE 33 17.163 16.512 36.013 1.00 50.00 C ATOM 292 CD1 ILE 33 17.378 16.288 38.543 1.00 50.00 C ATOM 293 CG1 ILE 33 18.086 16.555 37.232 1.00 50.00 C ATOM 294 CG2 ILE 33 16.583 15.124 35.790 1.00 50.00 C ATOM 295 N GLU 34 17.339 16.356 32.474 1.00 50.00 N ATOM 296 CA GLU 34 16.509 16.662 31.354 1.00 50.00 C ATOM 297 C GLU 34 16.437 15.507 30.431 1.00 50.00 C ATOM 298 O GLU 34 17.382 14.735 30.287 1.00 50.00 O ATOM 299 H GLU 34 17.959 15.706 32.412 1.00 50.00 H ATOM 300 CB GLU 34 17.033 17.898 30.621 1.00 50.00 C ATOM 301 CD GLU 34 16.671 19.617 28.805 1.00 50.00 C ATOM 302 CG GLU 34 16.159 18.351 29.463 1.00 50.00 C ATOM 303 OE1 GLU 34 17.711 20.141 29.256 1.00 50.00 O ATOM 304 OE2 GLU 34 16.032 20.085 27.839 1.00 50.00 O ATOM 305 N TYR 35 15.270 15.356 29.785 1.00 50.00 N ATOM 306 CA TYR 35 15.217 14.445 28.692 1.00 50.00 C ATOM 307 C TYR 35 15.108 15.350 27.513 1.00 50.00 C ATOM 308 O TYR 35 14.083 15.997 27.309 1.00 50.00 O ATOM 309 H TYR 35 14.532 15.813 30.027 1.00 50.00 H ATOM 310 CB TYR 35 14.043 13.477 28.858 1.00 50.00 C ATOM 311 CG TYR 35 13.952 12.433 27.767 1.00 50.00 C ATOM 312 HH TYR 35 13.091 9.741 24.261 1.00 50.00 H ATOM 313 OH TYR 35 13.714 9.554 24.777 1.00 50.00 O ATOM 314 CZ TYR 35 13.791 10.507 25.766 1.00 50.00 C ATOM 315 CD1 TYR 35 14.833 11.360 27.735 1.00 50.00 C ATOM 316 CE1 TYR 35 14.758 10.402 26.742 1.00 50.00 C ATOM 317 CD2 TYR 35 12.985 12.524 26.775 1.00 50.00 C ATOM 318 CE2 TYR 35 12.893 11.574 25.776 1.00 50.00 C ATOM 319 N GLY 36 16.191 15.468 26.715 1.00 50.00 N ATOM 320 CA GLY 36 16.073 16.419 25.650 1.00 50.00 C ATOM 321 C GLY 36 17.344 16.537 24.877 1.00 50.00 C ATOM 322 O GLY 36 18.295 15.781 25.076 1.00 50.00 O ATOM 323 H GLY 36 16.952 14.998 26.816 1.00 50.00 H ATOM 324 N VAL 37 17.356 17.520 23.952 1.00 50.00 N ATOM 325 CA VAL 37 18.465 17.793 23.092 1.00 50.00 C ATOM 326 C VAL 37 19.394 18.702 23.820 1.00 50.00 C ATOM 327 O VAL 37 18.971 19.644 24.485 1.00 50.00 O ATOM 328 H VAL 37 16.609 18.019 23.895 1.00 50.00 H ATOM 329 CB VAL 37 18.006 18.405 21.755 1.00 50.00 C ATOM 330 CG1 VAL 37 19.206 18.777 20.899 1.00 50.00 C ATOM 331 CG2 VAL 37 17.095 17.440 21.013 1.00 50.00 C ATOM 332 N PHE 38 20.707 18.447 23.690 1.00 50.00 N ATOM 333 CA PHE 38 21.656 19.222 24.419 1.00 50.00 C ATOM 334 C PHE 38 21.910 20.511 23.727 1.00 50.00 C ATOM 335 O PHE 38 21.782 20.626 22.510 1.00 50.00 O ATOM 336 H PHE 38 20.988 17.788 23.145 1.00 50.00 H ATOM 337 CB PHE 38 22.961 18.443 24.598 1.00 50.00 C ATOM 338 CG PHE 38 22.851 17.288 25.551 1.00 50.00 C ATOM 339 CZ PHE 38 22.656 15.151 27.317 1.00 50.00 C ATOM 340 CD1 PHE 38 21.615 16.848 25.990 1.00 50.00 C ATOM 341 CE1 PHE 38 21.514 15.785 26.867 1.00 50.00 C ATOM 342 CD2 PHE 38 23.986 16.643 26.011 1.00 50.00 C ATOM 343 CE2 PHE 38 23.885 15.580 26.890 1.00 50.00 C ATOM 344 N GLU 39 22.244 21.526 24.542 1.00 50.00 N ATOM 345 CA GLU 39 22.501 22.858 24.096 1.00 50.00 C ATOM 346 C GLU 39 23.951 22.942 23.761 1.00 50.00 C ATOM 347 O GLU 39 24.692 21.968 23.885 1.00 50.00 O ATOM 348 H GLU 39 22.301 21.326 25.417 1.00 50.00 H ATOM 349 CB GLU 39 22.099 23.870 25.170 1.00 50.00 C ATOM 350 CD GLU 39 20.249 24.910 26.539 1.00 50.00 C ATOM 351 CG GLU 39 20.611 23.886 25.482 1.00 50.00 C ATOM 352 OE1 GLU 39 21.172 25.537 27.101 1.00 50.00 O ATOM 353 OE2 GLU 39 19.042 25.086 26.807 1.00 50.00 O ATOM 354 N SER 40 24.381 24.125 23.293 1.00 50.00 N ATOM 355 CA SER 40 25.738 24.311 22.887 1.00 50.00 C ATOM 356 C SER 40 26.623 23.939 24.032 1.00 50.00 C ATOM 357 O SER 40 27.503 23.093 23.890 1.00 50.00 O ATOM 358 H SER 40 23.798 24.807 23.238 1.00 50.00 H ATOM 359 CB SER 40 25.970 25.756 22.441 1.00 50.00 C ATOM 360 HG SER 40 27.506 25.454 21.427 1.00 50.00 H ATOM 361 OG SER 40 27.320 25.960 22.057 1.00 50.00 O ATOM 538 N GLN 57 18.900 5.531 26.105 1.00 50.00 N ATOM 539 CA GLN 57 19.670 5.677 24.900 1.00 50.00 C ATOM 540 C GLN 57 20.969 4.951 25.064 1.00 50.00 C ATOM 541 O GLN 57 21.418 4.685 26.176 1.00 50.00 O ATOM 542 H GLN 57 18.519 6.252 26.484 1.00 50.00 H ATOM 543 CB GLN 57 19.897 7.157 24.585 1.00 50.00 C ATOM 544 CD GLN 57 17.906 7.460 23.060 1.00 50.00 C ATOM 545 CG GLN 57 18.621 7.936 24.311 1.00 50.00 C ATOM 546 OE1 GLN 57 18.486 7.426 21.976 1.00 50.00 O ATOM 547 HE21 GLN 57 16.168 6.801 22.501 1.00 50.00 H ATOM 548 HE22 GLN 57 16.251 7.132 24.022 1.00 50.00 H ATOM 549 NE2 GLN 57 16.639 7.091 23.210 1.00 50.00 N ATOM 550 N ASN 58 21.581 4.598 23.917 1.00 50.00 N ATOM 551 CA ASN 58 22.710 3.717 23.806 1.00 50.00 C ATOM 552 C ASN 58 23.965 4.177 24.499 1.00 50.00 C ATOM 553 O ASN 58 24.594 3.370 25.179 1.00 50.00 O ATOM 554 H ASN 58 21.224 4.967 23.178 1.00 50.00 H ATOM 555 CB ASN 58 23.045 3.458 22.336 1.00 50.00 C ATOM 556 CG ASN 58 22.038 2.546 21.661 1.00 50.00 C ATOM 557 OD1 ASN 58 21.285 1.836 22.328 1.00 50.00 O ATOM 558 HD21 ASN 58 21.444 2.042 19.883 1.00 50.00 H ATOM 559 HD22 ASN 58 22.591 3.098 19.884 1.00 50.00 H ATOM 560 ND2 ASN 58 22.022 2.563 20.333 1.00 50.00 N ATOM 561 N ILE 59 24.385 5.453 24.378 1.00 50.00 N ATOM 562 CA ILE 59 25.653 5.799 24.975 1.00 50.00 C ATOM 563 C ILE 59 25.479 6.001 26.447 1.00 50.00 C ATOM 564 O ILE 59 24.647 6.795 26.877 1.00 50.00 O ATOM 565 H ILE 59 23.906 6.079 23.945 1.00 50.00 H ATOM 566 CB ILE 59 26.261 7.056 24.324 1.00 50.00 C ATOM 567 CD1 ILE 59 26.926 8.044 22.071 1.00 50.00 C ATOM 568 CG1 ILE 59 26.560 6.798 22.846 1.00 50.00 C ATOM 569 CG2 ILE 59 27.500 7.504 25.084 1.00 50.00 C ATOM 570 N GLN 60 26.283 5.286 27.266 1.00 50.00 N ATOM 571 CA GLN 60 26.097 5.398 28.683 1.00 50.00 C ATOM 572 C GLN 60 27.418 5.517 29.367 1.00 50.00 C ATOM 573 O GLN 60 28.350 4.760 29.093 1.00 50.00 O ATOM 574 H GLN 60 26.925 4.748 26.937 1.00 50.00 H ATOM 575 CB GLN 60 25.320 4.195 29.218 1.00 50.00 C ATOM 576 CD GLN 60 23.156 2.892 29.252 1.00 50.00 C ATOM 577 CG GLN 60 23.907 4.075 28.672 1.00 50.00 C ATOM 578 OE1 GLN 60 23.725 1.817 29.442 1.00 50.00 O ATOM 579 HE21 GLN 60 21.382 2.419 29.882 1.00 50.00 H ATOM 580 HE22 GLN 60 21.496 3.891 29.380 1.00 50.00 H ATOM 581 NE2 GLN 60 21.873 3.088 29.534 1.00 50.00 N ATOM 582 N GLN 61 27.526 6.492 30.290 1.00 50.00 N ATOM 583 CA GLN 61 28.704 6.610 31.091 1.00 50.00 C ATOM 584 C GLN 61 28.260 7.211 32.385 1.00 50.00 C ATOM 585 O GLN 61 27.296 7.973 32.419 1.00 50.00 O ATOM 586 H GLN 61 26.846 7.073 30.400 1.00 50.00 H ATOM 587 CB GLN 61 29.757 7.457 30.374 1.00 50.00 C ATOM 588 CD GLN 61 31.806 6.302 31.294 1.00 50.00 C ATOM 589 CG GLN 61 31.058 7.612 31.143 1.00 50.00 C ATOM 590 OE1 GLN 61 32.098 5.626 30.307 1.00 50.00 O ATOM 591 HE21 GLN 61 32.560 5.169 32.678 1.00 50.00 H ATOM 592 HE22 GLN 61 31.884 6.463 33.227 1.00 50.00 H ATOM 593 NE2 GLN 61 32.117 5.939 32.533 1.00 50.00 N ATOM 594 N THR 62 28.959 6.870 33.485 1.00 50.00 N ATOM 595 CA THR 62 28.632 7.375 34.789 1.00 50.00 C ATOM 596 C THR 62 29.849 8.111 35.262 1.00 50.00 C ATOM 597 O THR 62 30.961 7.799 34.839 1.00 50.00 O ATOM 598 H THR 62 29.651 6.305 33.382 1.00 50.00 H ATOM 599 CB THR 62 28.229 6.241 35.749 1.00 50.00 C ATOM 600 HG1 THR 62 29.979 5.743 36.222 1.00 50.00 H ATOM 601 OG1 THR 62 29.328 5.334 35.909 1.00 50.00 O ATOM 602 CG2 THR 62 27.041 5.470 35.196 1.00 50.00 C ATOM 603 N THR 63 29.689 9.132 36.134 1.00 50.00 N ATOM 604 CA THR 63 30.898 9.796 36.523 1.00 50.00 C ATOM 605 C THR 63 30.823 10.294 37.928 1.00 50.00 C ATOM 606 O THR 63 29.750 10.589 38.456 1.00 50.00 O ATOM 607 H THR 63 28.898 9.403 36.468 1.00 50.00 H ATOM 608 CB THR 63 31.220 10.976 35.587 1.00 50.00 C ATOM 609 HG1 THR 63 32.472 11.800 36.719 1.00 50.00 H ATOM 610 OG1 THR 63 32.494 11.532 35.935 1.00 50.00 O ATOM 611 CG2 THR 63 30.163 12.062 35.716 1.00 50.00 C ATOM 612 N GLU 64 32.007 10.375 38.568 1.00 50.00 N ATOM 613 CA GLU 64 32.130 10.960 39.868 1.00 50.00 C ATOM 614 C GLU 64 32.479 12.389 39.603 1.00 50.00 C ATOM 615 O GLU 64 33.061 12.704 38.566 1.00 50.00 O ATOM 616 H GLU 64 32.734 10.047 38.152 1.00 50.00 H ATOM 617 CB GLU 64 33.183 10.216 40.692 1.00 50.00 C ATOM 618 CD GLU 64 31.656 8.588 41.876 1.00 50.00 C ATOM 619 CG GLU 64 32.848 8.756 40.954 1.00 50.00 C ATOM 620 OE1 GLU 64 31.044 9.612 42.248 1.00 50.00 O ATOM 621 OE2 GLU 64 31.334 7.433 42.224 1.00 50.00 O ATOM 622 N VAL 65 32.128 13.303 40.526 1.00 50.00 N ATOM 623 CA VAL 65 32.377 14.685 40.236 1.00 50.00 C ATOM 624 C VAL 65 33.245 15.225 41.334 1.00 50.00 C ATOM 625 O VAL 65 33.271 14.668 42.432 1.00 50.00 O ATOM 626 H VAL 65 31.748 13.068 41.306 1.00 50.00 H ATOM 627 CB VAL 65 31.064 15.479 40.103 1.00 50.00 C ATOM 628 CG1 VAL 65 31.354 16.952 39.856 1.00 50.00 C ATOM 629 CG2 VAL 65 30.206 14.906 38.986 1.00 50.00 C ATOM 630 N PRO 66 33.943 16.311 41.084 1.00 50.00 N ATOM 631 CA PRO 66 34.893 16.832 42.025 1.00 50.00 C ATOM 632 C PRO 66 34.329 17.005 43.395 1.00 50.00 C ATOM 633 O PRO 66 33.159 17.354 43.500 1.00 50.00 O ATOM 634 CB PRO 66 35.296 18.184 41.434 1.00 50.00 C ATOM 635 CD PRO 66 33.615 17.262 40.002 1.00 50.00 C ATOM 636 CG PRO 66 34.160 18.554 40.540 1.00 50.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 211 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 67.87 40.0 35 14.9 235 ARMSMC SECONDARY STRUCTURE . . 33.70 60.0 10 8.7 115 ARMSMC SURFACE . . . . . . . . 73.66 33.3 27 17.3 156 ARMSMC BURIED . . . . . . . . 42.86 62.5 8 10.1 79 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.33 69.2 13 14.1 92 ARMSSC1 RELIABLE SIDE CHAINS . 61.91 72.7 11 13.4 82 ARMSSC1 SECONDARY STRUCTURE . . 82.87 50.0 4 7.8 51 ARMSSC1 SURFACE . . . . . . . . 64.91 70.0 10 16.7 60 ARMSSC1 BURIED . . . . . . . . 66.70 66.7 3 9.4 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 30.08 70.0 10 16.7 60 ARMSSC2 RELIABLE SIDE CHAINS . 30.08 70.0 10 19.6 51 ARMSSC2 SECONDARY STRUCTURE . . 31.56 66.7 3 8.8 34 ARMSSC2 SURFACE . . . . . . . . 26.32 77.8 9 23.7 38 ARMSSC2 BURIED . . . . . . . . 53.01 0.0 1 4.5 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.51 0.0 3 15.8 19 ARMSSC3 RELIABLE SIDE CHAINS . 60.58 0.0 2 13.3 15 ARMSSC3 SECONDARY STRUCTURE . . 79.64 0.0 1 8.3 12 ARMSSC3 SURFACE . . . . . . . . 61.51 0.0 3 23.1 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 3 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.29 (Number of atoms: 28) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.29 28 23.3 120 CRMSCA CRN = ALL/NP . . . . . 0.4390 CRMSCA SECONDARY STRUCTURE . . 9.54 8 13.6 59 CRMSCA SURFACE . . . . . . . . 12.53 22 27.8 79 CRMSCA BURIED . . . . . . . . 11.37 6 14.6 41 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.26 138 23.4 589 CRMSMC SECONDARY STRUCTURE . . 9.42 39 13.4 291 CRMSMC SURFACE . . . . . . . . 12.54 109 28.2 387 CRMSMC BURIED . . . . . . . . 11.13 29 14.4 202 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.47 99 21.3 464 CRMSSC RELIABLE SIDE CHAINS . 12.21 83 21.3 390 CRMSSC SECONDARY STRUCTURE . . 10.43 37 14.0 264 CRMSSC SURFACE . . . . . . . . 13.07 79 27.1 292 CRMSSC BURIED . . . . . . . . 9.77 20 11.6 172 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.28 211 22.4 944 CRMSALL SECONDARY STRUCTURE . . 9.98 69 13.8 500 CRMSALL SURFACE . . . . . . . . 12.69 167 27.5 608 CRMSALL BURIED . . . . . . . . 10.58 44 13.1 336 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.233 0.660 0.711 28 23.3 120 ERRCA SECONDARY STRUCTURE . . 41.487 0.718 0.759 8 13.6 59 ERRCA SURFACE . . . . . . . . 39.259 0.663 0.714 22 27.8 79 ERRCA BURIED . . . . . . . . 39.138 0.648 0.704 6 14.6 41 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.245 0.660 0.713 138 23.4 589 ERRMC SECONDARY STRUCTURE . . 41.594 0.721 0.761 39 13.4 291 ERRMC SURFACE . . . . . . . . 39.159 0.660 0.712 109 28.2 387 ERRMC BURIED . . . . . . . . 39.564 0.662 0.714 29 14.4 202 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 38.816 0.647 0.704 99 21.3 464 ERRSC RELIABLE SIDE CHAINS . 39.095 0.655 0.709 83 21.3 390 ERRSC SECONDARY STRUCTURE . . 40.670 0.696 0.741 37 14.0 264 ERRSC SURFACE . . . . . . . . 38.203 0.631 0.691 79 27.1 292 ERRSC BURIED . . . . . . . . 41.237 0.711 0.752 20 11.6 172 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.115 0.656 0.710 211 22.4 944 ERRALL SECONDARY STRUCTURE . . 41.099 0.708 0.750 69 13.8 500 ERRALL SURFACE . . . . . . . . 38.809 0.649 0.705 167 27.5 608 ERRALL BURIED . . . . . . . . 40.279 0.683 0.731 44 13.1 336 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 15 28 120 DISTCA CA (P) 0.00 0.00 0.83 4.17 12.50 120 DISTCA CA (RMS) 0.00 0.00 2.31 3.96 7.02 DISTCA ALL (N) 0 0 5 29 111 211 944 DISTALL ALL (P) 0.00 0.00 0.53 3.07 11.76 944 DISTALL ALL (RMS) 0.00 0.00 2.45 3.93 6.99 DISTALL END of the results output