####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 98 ( 392), selected 98 , name T0568AL396_1-D1 # Molecule2: number of CA atoms 120 ( 944), selected 98 , name T0568-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0568AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 104 - 158 4.97 7.66 LCS_AVERAGE: 35.72 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 135 - 148 1.91 8.54 LCS_AVERAGE: 9.12 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 120 - 129 0.89 9.49 LONGEST_CONTINUOUS_SEGMENT: 10 135 - 144 0.93 9.29 LCS_AVERAGE: 5.60 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 98 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Q 57 Q 57 3 9 15 3 3 5 6 11 11 13 17 17 20 22 29 31 33 37 38 39 39 42 48 LCS_GDT N 58 N 58 5 9 15 3 4 5 8 11 12 15 17 21 24 27 29 31 33 47 49 50 52 59 76 LCS_GDT I 59 I 59 5 9 15 4 4 5 8 11 12 15 17 28 33 33 36 42 52 66 77 79 85 87 89 LCS_GDT Q 60 Q 60 5 9 34 4 4 5 8 11 12 15 17 28 33 42 46 50 59 70 77 83 87 87 89 LCS_GDT Q 61 Q 61 5 9 36 4 4 5 8 11 12 17 24 35 41 52 62 67 73 78 81 83 87 87 89 LCS_GDT T 62 T 62 5 9 36 4 4 5 11 18 27 37 43 48 57 60 67 72 75 78 81 83 87 87 89 LCS_GDT T 63 T 63 5 9 36 9 15 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT E 64 E 64 5 9 36 3 15 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT V 65 V 65 5 9 36 4 10 19 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT P 66 P 66 5 8 36 4 10 19 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT A 67 A 67 6 8 36 5 6 7 19 31 35 39 42 48 53 61 67 72 75 78 81 83 87 87 89 LCS_GDT K 68 K 68 6 8 36 5 6 9 19 30 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 69 L 69 6 8 36 5 6 7 10 15 26 35 41 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT G 70 G 70 6 8 36 5 6 6 9 12 18 20 35 43 54 63 67 72 75 78 81 83 87 87 89 LCS_GDT T 71 T 71 6 11 36 5 6 8 10 12 18 20 28 39 50 63 67 72 75 78 81 83 87 87 89 LCS_GDT K 72 K 72 6 11 36 5 6 8 9 12 18 20 23 27 46 58 67 72 75 78 81 83 87 87 89 LCS_GDT F 73 F 73 5 11 36 3 4 8 9 12 18 20 23 33 46 58 67 72 75 78 81 83 87 87 89 LCS_GDT G 74 G 74 5 11 36 3 4 8 9 12 18 20 23 27 45 58 67 72 75 78 81 83 87 87 89 LCS_GDT M 75 M 75 5 11 36 3 4 8 12 12 18 19 28 36 50 63 67 72 75 78 81 83 87 87 89 LCS_GDT R 76 R 76 5 11 36 3 5 8 10 12 18 19 35 43 54 63 67 72 75 78 81 83 87 87 89 LCS_GDT Y 77 Y 77 5 11 36 4 5 8 13 16 16 19 26 34 52 63 67 72 75 78 81 83 87 87 89 LCS_GDT Q 78 Q 78 5 11 36 4 5 8 13 16 18 19 28 38 52 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 79 L 79 5 11 36 4 5 8 13 16 18 19 28 40 54 63 67 72 75 78 81 83 87 87 89 LCS_GDT S 80 S 80 5 11 36 4 5 8 13 16 18 19 28 40 54 63 67 72 75 78 81 83 87 87 89 LCS_GDT K 82 K 82 5 11 36 3 4 8 10 16 18 20 34 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT Q 83 Q 83 4 11 36 3 4 6 8 16 18 20 28 45 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT E 84 E 84 4 11 36 3 3 6 8 16 18 20 28 45 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT G 85 G 85 4 13 36 3 4 7 9 12 18 19 29 44 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT D 86 D 86 7 13 36 3 5 9 12 12 15 19 23 36 53 63 67 72 75 78 81 83 87 87 89 LCS_GDT T 87 T 87 8 13 36 3 6 9 12 12 18 19 29 45 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT P 88 P 88 8 13 36 3 6 9 12 12 18 35 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 89 L 89 8 13 36 3 6 9 12 12 18 35 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT T 90 T 90 8 13 36 3 6 7 12 12 18 32 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 91 L 91 8 13 36 4 6 9 12 12 16 22 41 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 92 L 92 8 13 36 4 6 9 12 12 18 30 41 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT Y 93 Y 93 8 13 36 4 6 9 12 12 16 27 38 46 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 94 L 94 8 13 36 4 6 9 12 16 22 27 41 47 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT T 95 T 95 7 13 36 3 6 9 12 12 15 19 29 41 57 63 67 70 75 78 80 83 87 87 89 LCS_GDT P 96 P 96 7 13 36 3 5 7 12 12 15 18 29 41 54 60 66 70 74 76 80 83 87 87 89 LCS_GDT G 97 G 97 5 13 36 3 4 7 10 12 13 13 16 20 28 41 58 64 67 73 75 76 78 82 86 LCS_GDT V 98 V 98 5 11 35 3 5 6 6 7 9 11 15 15 19 21 26 34 51 56 61 69 73 77 79 LCS_GDT V 99 V 99 5 6 25 3 5 6 6 6 6 7 7 8 8 9 9 10 34 35 39 49 64 72 77 LCS_GDT T 100 T 100 5 6 17 3 5 6 6 6 6 7 7 9 9 11 12 27 34 35 40 49 65 73 77 LCS_GDT P 101 P 101 5 6 15 3 5 6 6 6 6 7 7 11 11 14 14 14 17 19 21 21 22 25 26 LCS_GDT D 102 D 102 5 6 15 3 5 6 6 6 6 7 7 11 13 14 14 14 15 19 21 40 41 42 45 LCS_GDT G 103 G 103 4 5 15 3 3 4 4 5 5 6 17 20 21 23 28 38 41 43 56 68 82 85 87 LCS_GDT Q 104 Q 104 4 5 52 3 3 4 4 5 5 6 7 19 28 28 46 48 55 72 78 83 87 87 89 LCS_GDT R 105 R 105 3 10 52 3 4 9 17 21 26 28 34 38 43 52 62 72 75 78 81 83 87 87 89 LCS_GDT H 106 H 106 6 10 52 3 5 7 8 9 10 16 24 30 41 46 62 68 73 78 81 83 87 87 89 LCS_GDT D 107 D 107 6 10 52 3 5 6 8 9 10 12 14 24 28 36 46 52 54 70 76 78 83 87 89 LCS_GDT K 108 K 108 7 10 52 3 6 7 8 9 10 16 20 25 38 45 49 64 71 75 81 83 87 87 89 LCS_GDT F 109 F 109 7 10 52 5 6 7 8 11 19 24 30 39 47 58 63 72 75 78 81 83 87 87 89 LCS_GDT E 110 E 110 7 10 52 5 6 7 8 11 16 22 30 38 47 58 63 72 75 78 81 83 87 87 89 LCS_GDT V 111 V 111 7 10 52 4 6 7 13 17 19 24 32 39 47 58 64 72 75 78 81 83 87 87 89 LCS_GDT V 112 V 112 7 10 52 5 6 7 8 9 10 20 28 38 41 49 58 71 75 78 81 83 87 87 89 LCS_GDT Q 113 Q 113 7 10 52 5 6 7 8 9 10 13 25 38 41 44 50 63 70 77 81 83 87 87 89 LCS_GDT K 114 K 114 7 10 52 5 6 7 8 9 10 12 18 28 30 44 49 55 68 75 79 83 87 87 89 LCS_GDT G 118 G 118 4 5 52 0 3 4 5 5 5 6 7 15 23 28 40 60 69 76 79 83 87 87 89 LCS_GDT A 119 A 119 4 12 52 3 4 6 9 10 12 18 32 39 53 62 67 72 75 78 81 83 87 87 89 LCS_GDT P 120 P 120 10 12 52 3 4 10 11 20 29 35 41 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT T 121 T 121 10 12 52 3 9 11 22 30 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT D 122 D 122 10 12 52 3 15 19 26 30 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT V 123 V 123 10 12 52 3 15 19 28 30 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT M 124 M 124 10 12 52 5 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT A 125 A 125 10 12 52 6 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT Y 126 Y 126 10 12 52 6 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT E 127 E 127 10 12 52 5 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT F 128 F 128 10 12 52 5 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT T 129 T 129 10 12 52 3 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT E 130 E 130 4 12 52 3 5 19 28 31 35 39 43 48 57 62 67 72 75 78 81 83 87 87 89 LCS_GDT P 131 P 131 4 12 52 3 4 4 6 23 34 39 43 48 57 61 66 72 75 78 81 83 87 87 89 LCS_GDT H 132 H 132 4 10 52 3 5 8 10 25 34 39 43 48 57 62 67 72 75 78 81 83 87 87 89 LCS_GDT E 133 E 133 4 6 52 3 4 6 9 11 13 20 23 26 41 62 66 70 75 78 81 83 87 87 89 LCS_GDT V 134 V 134 4 12 52 3 4 4 7 12 15 31 41 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT V 135 V 135 10 14 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT K 136 K 136 10 14 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT G 137 G 137 10 14 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT E 138 E 138 10 14 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT W 139 W 139 10 14 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT R 140 R 140 10 14 52 5 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 141 L 141 10 14 52 5 10 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT M 142 M 142 10 14 52 5 10 20 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT V 143 V 143 10 14 52 5 8 12 26 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT F 144 F 144 10 14 52 3 8 12 26 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT Q 145 Q 145 8 14 52 9 14 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT G 146 G 146 8 14 52 4 6 9 13 18 31 34 39 47 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT D 147 D 147 8 14 52 3 6 9 13 16 25 33 39 45 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT R 148 R 148 8 14 52 4 10 20 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 149 L 149 8 11 52 5 6 11 26 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT L 150 L 150 8 11 52 4 6 12 19 27 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT A 151 A 151 6 11 52 4 5 9 13 27 32 37 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT E 152 E 152 7 11 52 4 14 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT K 153 K 153 7 11 52 4 6 15 26 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT S 154 S 154 7 11 52 9 15 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT F 155 F 155 7 11 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT D 156 D 156 7 11 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT V 157 V 157 7 11 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_GDT R 158 R 158 7 11 52 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 LCS_AVERAGE LCS_A: 16.82 ( 5.60 9.12 35.72 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 16 22 28 31 35 39 43 48 57 63 67 72 75 78 81 83 87 87 89 GDT PERCENT_AT 7.50 13.33 18.33 23.33 25.83 29.17 32.50 35.83 40.00 47.50 52.50 55.83 60.00 62.50 65.00 67.50 69.17 72.50 72.50 74.17 GDT RMS_LOCAL 0.35 0.60 0.96 1.33 1.53 1.78 2.05 2.51 2.89 3.54 4.00 4.10 4.40 4.48 4.71 4.97 5.09 5.37 5.37 5.55 GDT RMS_ALL_AT 7.82 7.95 7.88 7.77 7.97 7.90 7.74 7.66 7.54 7.35 7.45 7.38 7.38 7.40 7.39 7.48 7.47 7.41 7.41 7.46 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Q 57 Q 57 16.446 5 0.057 0.057 17.365 0.000 0.000 LGA N 58 N 58 13.259 4 0.537 0.537 14.536 0.000 0.000 LGA I 59 I 59 9.112 4 0.129 0.129 10.830 0.714 0.357 LGA Q 60 Q 60 8.526 5 0.098 0.098 8.526 6.190 2.751 LGA Q 61 Q 61 7.657 5 0.127 0.127 8.081 12.619 5.608 LGA T 62 T 62 5.238 3 0.594 0.594 6.384 32.619 18.639 LGA T 63 T 63 1.159 3 0.643 0.643 1.463 83.690 47.823 LGA E 64 E 64 0.587 5 0.130 0.130 0.739 92.857 41.270 LGA V 65 V 65 1.471 3 0.114 0.114 1.471 88.214 50.408 LGA P 66 P 66 0.965 3 0.099 0.099 2.645 75.476 43.129 LGA A 67 A 67 2.744 1 0.437 0.437 2.744 71.071 56.857 LGA K 68 K 68 2.976 5 0.054 0.054 4.474 50.595 22.487 LGA L 69 L 69 5.900 4 0.049 0.049 7.247 19.048 9.524 LGA G 70 G 70 8.710 0 0.056 0.056 9.708 3.333 3.333 LGA T 71 T 71 7.723 3 0.114 0.114 7.750 8.571 4.898 LGA K 72 K 72 8.569 5 0.101 0.101 8.860 2.857 1.270 LGA F 73 F 73 8.255 7 0.049 0.049 8.255 5.357 1.948 LGA G 74 G 74 8.122 0 0.203 0.203 8.334 4.762 4.762 LGA M 75 M 75 8.073 4 0.079 0.079 8.073 8.810 4.405 LGA R 76 R 76 7.027 7 0.059 0.059 7.638 9.286 3.377 LGA Y 77 Y 77 7.612 8 0.266 0.266 7.612 10.119 3.373 LGA Q 78 Q 78 7.828 5 0.015 0.015 7.884 7.857 3.492 LGA L 79 L 79 6.916 4 0.021 0.021 7.116 11.667 5.833 LGA S 80 S 80 7.440 2 0.113 0.113 7.440 11.786 7.857 LGA K 82 K 82 6.453 5 0.200 0.200 7.720 11.071 4.921 LGA Q 83 Q 83 8.108 5 0.578 0.578 8.417 6.667 2.963 LGA E 84 E 84 7.806 5 0.252 0.252 8.605 6.071 2.698 LGA G 85 G 85 8.084 0 0.619 0.619 9.698 4.524 4.524 LGA D 86 D 86 8.436 4 0.092 0.092 8.436 9.762 4.881 LGA T 87 T 87 7.138 3 0.126 0.126 8.146 12.262 7.007 LGA P 88 P 88 4.434 3 0.239 0.239 5.078 31.548 18.027 LGA L 89 L 89 4.514 4 0.028 0.028 4.760 31.429 15.714 LGA T 90 T 90 4.723 3 0.167 0.167 4.774 31.429 17.959 LGA L 91 L 91 5.088 4 0.160 0.160 5.088 28.810 14.405 LGA L 92 L 92 4.804 4 0.182 0.182 4.943 31.429 15.714 LGA Y 93 Y 93 5.570 8 0.091 0.091 5.839 22.619 7.540 LGA L 94 L 94 5.559 4 0.036 0.036 5.680 22.619 11.310 LGA T 95 T 95 6.755 3 0.656 0.656 6.755 14.286 8.163 LGA P 96 P 96 7.593 3 0.167 0.167 10.231 4.405 2.517 LGA G 97 G 97 12.920 0 0.577 0.577 16.071 0.000 0.000 LGA V 98 V 98 15.834 3 0.186 0.186 15.834 0.000 0.000 LGA V 99 V 99 17.130 3 0.094 0.094 19.312 0.000 0.000 LGA T 100 T 100 17.092 3 0.050 0.050 17.561 0.000 0.000 LGA P 101 P 101 19.308 3 0.695 0.695 19.308 0.000 0.000 LGA D 102 D 102 16.262 4 0.617 0.617 17.045 0.000 0.000 LGA G 103 G 103 12.246 0 0.643 0.643 13.118 0.000 0.000 LGA Q 104 Q 104 9.575 5 0.146 0.146 10.194 3.810 1.693 LGA R 105 R 105 9.019 7 0.283 0.283 10.822 0.833 0.303 LGA H 106 H 106 10.588 6 0.577 0.577 12.624 0.357 0.143 LGA D 107 D 107 13.366 4 0.177 0.177 13.366 0.000 0.000 LGA K 108 K 108 10.575 5 0.131 0.131 11.564 1.548 0.688 LGA F 109 F 109 8.201 7 0.105 0.105 9.386 2.619 0.952 LGA E 110 E 110 8.961 5 0.149 0.149 9.024 2.500 1.111 LGA V 111 V 111 8.658 3 0.139 0.139 9.238 2.143 1.224 LGA V 112 V 112 10.771 3 0.022 0.022 11.053 0.000 0.000 LGA Q 113 Q 113 11.809 5 0.109 0.109 12.472 0.000 0.000 LGA K 114 K 114 13.710 5 0.611 0.611 14.133 0.000 0.000 LGA G 118 G 118 13.708 0 0.157 0.157 13.708 0.000 0.000 LGA A 119 A 119 10.039 1 0.223 0.223 11.026 1.905 1.524 LGA P 120 P 120 6.744 3 0.104 0.104 8.016 21.667 12.381 LGA T 121 T 121 3.133 3 0.056 0.056 4.782 40.714 23.265 LGA D 122 D 122 3.007 4 0.014 0.014 3.007 61.190 30.595 LGA V 123 V 123 1.960 3 0.037 0.037 3.286 61.190 34.966 LGA M 124 M 124 2.274 4 0.122 0.122 2.274 66.786 33.393 LGA A 125 A 125 2.091 1 0.054 0.054 2.121 68.810 55.048 LGA Y 126 Y 126 1.672 8 0.076 0.076 2.162 68.810 22.937 LGA E 127 E 127 2.718 5 0.041 0.041 2.718 59.048 26.243 LGA F 128 F 128 2.730 7 0.123 0.123 2.730 60.952 22.165 LGA T 129 T 129 2.449 3 0.525 0.525 4.091 55.952 31.973 LGA E 130 E 130 0.936 5 0.103 0.103 1.774 83.810 37.249 LGA P 131 P 131 3.408 3 0.636 0.636 3.408 61.190 34.966 LGA H 132 H 132 3.420 6 0.690 0.690 4.575 42.143 16.857 LGA E 133 E 133 7.624 5 0.097 0.097 7.624 13.690 6.085 LGA V 134 V 134 6.127 3 0.506 0.506 6.127 25.476 14.558 LGA V 135 V 135 1.206 3 0.590 0.590 2.251 77.262 44.150 LGA K 136 K 136 1.006 5 0.029 0.029 1.357 81.429 36.190 LGA G 137 G 137 1.632 0 0.042 0.042 1.632 79.286 79.286 LGA E 138 E 138 1.560 5 0.077 0.077 1.634 72.857 32.381 LGA W 139 W 139 1.595 10 0.108 0.108 1.719 72.857 20.816 LGA R 140 R 140 2.476 7 0.210 0.210 2.476 66.786 24.286 LGA L 141 L 141 2.126 4 0.127 0.127 2.253 68.810 34.405 LGA M 142 M 142 1.851 4 0.157 0.157 2.006 70.833 35.417 LGA V 143 V 143 2.944 3 0.160 0.160 2.944 57.143 32.653 LGA F 144 F 144 2.918 7 0.162 0.162 2.955 57.143 20.779 LGA Q 145 Q 145 1.658 5 0.051 0.051 3.159 61.429 27.302 LGA G 146 G 146 5.998 0 0.075 0.075 5.998 25.357 25.357 LGA D 147 D 147 5.713 4 0.065 0.065 5.864 27.857 13.929 LGA R 148 R 148 2.027 7 0.169 0.169 3.119 65.119 23.680 LGA L 149 L 149 2.242 4 0.051 0.051 2.293 66.786 33.393 LGA L 150 L 150 2.783 4 0.656 0.656 5.269 49.524 24.762 LGA A 151 A 151 3.594 1 0.087 0.087 3.594 55.833 44.667 LGA E 152 E 152 1.039 5 0.099 0.099 2.267 77.381 34.392 LGA K 153 K 153 1.985 5 0.115 0.115 2.078 68.810 30.582 LGA S 154 S 154 1.072 2 0.133 0.133 1.425 83.690 55.794 LGA F 155 F 155 1.529 7 0.069 0.069 1.800 75.000 27.273 LGA D 156 D 156 1.376 4 0.089 0.089 1.376 81.429 40.714 LGA V 157 V 157 1.205 3 0.045 0.045 1.361 81.429 46.531 LGA R 158 R 158 1.176 8 0.176 0.176 2.096 75.119 25.040 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 98 392 392 100.00 787 392 49.81 120 SUMMARY(RMSD_GDC): 7.233 7.149 7.149 27.439 14.215 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 98 120 4.0 43 2.51 35.000 29.573 1.648 LGA_LOCAL RMSD: 2.509 Number of atoms: 43 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.663 Number of assigned atoms: 98 Std_ASGN_ATOMS RMSD: 7.233 Standard rmsd on all 98 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.889945 * X + 0.455713 * Y + -0.017995 * Z + -17.592070 Y_new = 0.386088 * X + -0.773806 * Y + -0.502156 * Z + 26.299576 Z_new = -0.242763 * X + 0.439943 * Y + -0.864590 * Z + 36.447453 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.409329 0.245213 2.670893 [DEG: 23.4528 14.0497 153.0309 ] ZXZ: -0.035820 2.615130 -0.504229 [DEG: -2.0523 149.8359 -28.8902 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0568AL396_1-D1 REMARK 2: T0568-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0568AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 98 120 4.0 43 2.51 29.573 7.23 REMARK ---------------------------------------------------------- MOLECULE T0568AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1xau_A ATOM 17 N GLN 57 20.179 15.020 37.256 1.00 0.00 N ATOM 18 CA GLN 57 20.432 14.519 35.871 1.00 0.00 C ATOM 19 C GLN 57 19.117 14.890 35.171 1.00 0.00 C ATOM 20 O GLN 57 18.019 14.447 35.568 1.00 0.00 O ATOM 21 N ASN 58 19.245 15.752 34.163 1.00 0.00 N ATOM 22 CA ASN 58 18.108 16.371 33.552 1.00 0.00 C ATOM 23 C ASN 58 17.662 16.024 32.128 1.00 0.00 C ATOM 24 O ASN 58 17.337 16.897 31.341 1.00 0.00 O ATOM 25 N ILE 59 17.650 14.743 31.798 1.00 0.00 N ATOM 26 CA ILE 59 17.098 14.336 30.503 1.00 0.00 C ATOM 27 C ILE 59 15.591 14.662 30.693 1.00 0.00 C ATOM 28 O ILE 59 15.057 14.397 31.773 1.00 0.00 O ATOM 29 N GLN 60 14.928 15.214 29.684 1.00 0.00 N ATOM 30 CA GLN 60 13.482 15.491 29.809 1.00 0.00 C ATOM 31 C GLN 60 12.659 14.235 29.849 1.00 0.00 C ATOM 32 O GLN 60 12.985 13.268 29.156 1.00 0.00 O ATOM 33 N GLN 61 11.573 14.261 30.616 1.00 0.00 N ATOM 34 CA GLN 61 10.687 13.102 30.731 1.00 0.00 C ATOM 35 C GLN 61 10.118 12.745 29.366 1.00 0.00 C ATOM 36 O GLN 61 9.886 13.611 28.565 1.00 0.00 O ATOM 37 N THR 62 9.950 11.476 29.081 1.00 0.00 N ATOM 38 CA THR 62 9.332 11.134 27.796 1.00 0.00 C ATOM 39 C THR 62 10.196 11.533 26.608 1.00 0.00 C ATOM 40 O THR 62 9.680 11.772 25.547 1.00 0.00 O ATOM 41 N THR 63 11.506 11.669 26.779 1.00 0.00 N ATOM 42 CA THR 63 12.354 12.035 25.631 1.00 0.00 C ATOM 43 C THR 63 12.405 10.894 24.594 1.00 0.00 C ATOM 44 O THR 63 12.578 9.735 24.989 1.00 0.00 O ATOM 45 N GLU 64 12.260 11.170 23.291 1.00 0.00 N ATOM 46 CA GLU 64 12.284 10.068 22.284 1.00 0.00 C ATOM 47 C GLU 64 12.931 10.639 21.024 1.00 0.00 C ATOM 48 O GLU 64 12.626 11.802 20.683 1.00 0.00 O ATOM 49 N VAL 65 13.815 9.864 20.375 1.00 0.00 N ATOM 50 CA VAL 65 14.455 10.304 19.150 1.00 0.00 C ATOM 51 C VAL 65 14.639 9.155 18.191 1.00 0.00 C ATOM 52 O VAL 65 14.759 8.009 18.612 1.00 0.00 O ATOM 53 N PRO 66 14.678 9.455 16.894 1.00 0.00 N ATOM 54 CA PRO 66 14.902 8.411 15.914 1.00 0.00 C ATOM 55 C PRO 66 16.270 8.707 15.219 1.00 0.00 C ATOM 56 O PRO 66 16.691 9.837 15.107 1.00 0.00 O ATOM 57 N ALA 67 16.916 7.677 14.728 1.00 0.00 N ATOM 58 CA ALA 67 18.197 7.807 14.101 1.00 0.00 C ATOM 59 C ALA 67 18.174 6.796 12.919 1.00 0.00 C ATOM 60 O ALA 67 17.243 5.958 12.796 1.00 0.00 O ATOM 61 N LYS 68 19.182 6.886 12.065 1.00 0.00 N ATOM 62 CA LYS 68 19.290 5.983 10.912 1.00 0.00 C ATOM 63 C LYS 68 20.517 5.135 11.119 1.00 0.00 C ATOM 64 O LYS 68 21.558 5.652 11.518 1.00 0.00 O ATOM 65 N LEU 69 20.450 3.856 10.794 1.00 0.00 N ATOM 66 CA LEU 69 21.609 3.033 10.964 1.00 0.00 C ATOM 67 C LEU 69 22.773 3.573 10.172 1.00 0.00 C ATOM 68 O LEU 69 22.569 4.103 9.065 1.00 0.00 O ATOM 69 N GLY 70 23.977 3.491 10.737 1.00 0.00 N ATOM 70 CA GLY 70 25.174 4.044 10.084 1.00 0.00 C ATOM 71 C GLY 70 25.481 5.521 10.347 1.00 0.00 C ATOM 72 O GLY 70 26.572 6.010 10.042 1.00 0.00 O ATOM 73 N THR 71 24.521 6.301 10.850 1.00 0.00 N ATOM 74 CA THR 71 24.796 7.694 11.192 1.00 0.00 C ATOM 75 C THR 71 25.646 7.808 12.452 1.00 0.00 C ATOM 76 O THR 71 25.638 6.875 13.273 1.00 0.00 O ATOM 77 N LYS 72 26.409 8.920 12.586 1.00 0.00 N ATOM 78 CA LYS 72 27.129 9.239 13.881 1.00 0.00 C ATOM 79 C LYS 72 25.955 9.812 14.678 1.00 0.00 C ATOM 80 O LYS 72 25.303 10.728 14.189 1.00 0.00 O ATOM 81 N PHE 73 25.691 9.371 15.901 1.00 0.00 N ATOM 82 CA PHE 73 24.487 9.883 16.608 1.00 0.00 C ATOM 83 C PHE 73 24.851 10.051 18.072 1.00 0.00 C ATOM 84 O PHE 73 25.757 9.372 18.565 1.00 0.00 O ATOM 85 N GLY 74 24.202 10.966 18.784 1.00 0.00 N ATOM 86 CA GLY 74 24.507 11.075 20.181 1.00 0.00 C ATOM 87 C GLY 74 23.270 11.338 21.041 1.00 0.00 C ATOM 88 O GLY 74 22.237 11.827 20.509 1.00 0.00 O ATOM 89 N MET 75 23.330 10.935 22.321 1.00 0.00 N ATOM 90 CA MET 75 22.276 11.327 23.247 1.00 0.00 C ATOM 91 C MET 75 22.953 12.046 24.398 1.00 0.00 C ATOM 92 O MET 75 24.146 11.888 24.668 1.00 0.00 O ATOM 93 N ARG 76 22.180 12.893 25.046 1.00 0.00 N ATOM 94 CA ARG 76 22.765 13.785 26.026 1.00 0.00 C ATOM 95 C ARG 76 22.100 13.700 27.367 1.00 0.00 C ATOM 96 O ARG 76 20.879 13.611 27.441 1.00 0.00 O ATOM 97 N TYR 77 22.908 13.924 28.395 1.00 0.00 N ATOM 98 CA TYR 77 22.388 13.929 29.778 1.00 0.00 C ATOM 99 C TYR 77 22.836 15.226 30.436 1.00 0.00 C ATOM 100 O TYR 77 23.976 15.311 30.870 1.00 0.00 O ATOM 101 N GLN 78 21.999 16.263 30.446 1.00 0.00 N ATOM 102 CA GLN 78 22.398 17.542 31.091 1.00 0.00 C ATOM 103 C GLN 78 22.626 17.253 32.605 1.00 0.00 C ATOM 104 O GLN 78 21.853 16.510 33.224 1.00 0.00 O ATOM 105 N LEU 79 23.661 17.811 33.204 1.00 0.00 N ATOM 106 CA LEU 79 23.961 17.554 34.614 1.00 0.00 C ATOM 107 C LEU 79 24.121 18.841 35.388 1.00 0.00 C ATOM 108 O LEU 79 25.009 19.677 35.035 1.00 0.00 O ATOM 109 N SER 80 23.275 19.025 36.396 1.00 0.00 N ATOM 110 CA SER 80 23.396 20.205 37.267 1.00 0.00 C ATOM 111 C SER 80 24.188 19.751 38.523 1.00 0.00 C ATOM 112 O SER 80 23.852 18.780 39.158 1.00 0.00 O ATOM 113 N LYS 82 25.278 20.414 38.869 1.00 0.00 N ATOM 114 CA LYS 82 25.990 19.984 40.070 1.00 0.00 C ATOM 115 C LYS 82 26.475 21.252 40.749 1.00 0.00 C ATOM 116 O LYS 82 26.387 22.328 40.132 1.00 0.00 O ATOM 117 N GLN 83 26.915 21.112 41.990 1.00 0.00 N ATOM 118 CA GLN 83 27.257 22.247 42.816 1.00 0.00 C ATOM 119 C GLN 83 28.716 22.584 42.932 1.00 0.00 C ATOM 120 O GLN 83 29.068 23.736 42.754 1.00 0.00 O ATOM 121 N GLU 84 29.548 21.602 43.207 1.00 0.00 N ATOM 122 CA GLU 84 30.955 21.909 43.322 1.00 0.00 C ATOM 123 C GLU 84 31.694 21.024 42.340 1.00 0.00 C ATOM 124 O GLU 84 32.082 21.497 41.281 1.00 0.00 O ATOM 125 N GLY 85 31.845 19.747 42.652 1.00 0.00 N ATOM 126 CA GLY 85 32.565 18.859 41.763 1.00 0.00 C ATOM 127 C GLY 85 31.658 18.048 40.858 1.00 0.00 C ATOM 128 O GLY 85 30.561 17.716 41.250 1.00 0.00 O ATOM 129 N ASP 86 32.153 17.766 39.663 1.00 0.00 N ATOM 130 CA ASP 86 31.388 17.038 38.649 1.00 0.00 C ATOM 131 C ASP 86 31.263 15.595 39.055 1.00 0.00 C ATOM 132 O ASP 86 32.245 14.892 39.421 1.00 0.00 O ATOM 133 N THR 87 30.046 15.089 39.046 1.00 0.00 N ATOM 134 CA THR 87 29.872 13.674 39.436 1.00 0.00 C ATOM 135 C THR 87 30.392 12.684 38.350 1.00 0.00 C ATOM 136 O THR 87 30.561 13.099 37.248 1.00 0.00 O ATOM 137 N PRO 88 30.661 11.416 38.697 1.00 0.00 N ATOM 138 CA PRO 88 31.110 10.417 37.704 1.00 0.00 C ATOM 139 C PRO 88 29.734 9.877 37.281 1.00 0.00 C ATOM 140 O PRO 88 29.046 9.223 38.048 1.00 0.00 O ATOM 141 N LEU 89 29.363 10.146 36.054 1.00 0.00 N ATOM 142 CA LEU 89 28.062 9.712 35.592 1.00 0.00 C ATOM 143 C LEU 89 28.218 8.539 34.646 1.00 0.00 C ATOM 144 O LEU 89 29.200 8.526 33.899 1.00 0.00 O ATOM 145 N THR 90 27.284 7.607 34.672 1.00 0.00 N ATOM 146 CA THR 90 27.392 6.469 33.758 1.00 0.00 C ATOM 147 C THR 90 26.105 6.261 32.974 1.00 0.00 C ATOM 148 O THR 90 25.076 6.712 33.391 1.00 0.00 O ATOM 149 N LEU 91 26.172 5.582 31.840 1.00 0.00 N ATOM 150 CA LEU 91 24.952 5.380 31.055 1.00 0.00 C ATOM 151 C LEU 91 24.467 3.973 31.345 1.00 0.00 C ATOM 152 O LEU 91 25.283 3.048 31.579 1.00 0.00 O ATOM 153 N LEU 92 23.157 3.815 31.247 1.00 0.00 N ATOM 154 CA LEU 92 22.512 2.534 31.455 1.00 0.00 C ATOM 155 C LEU 92 21.570 2.295 30.279 1.00 0.00 C ATOM 156 O LEU 92 21.090 3.244 29.671 1.00 0.00 O ATOM 157 N TYR 93 21.299 1.022 29.971 1.00 0.00 N ATOM 158 CA TYR 93 20.377 0.725 28.890 1.00 0.00 C ATOM 159 C TYR 93 19.436 -0.360 29.441 1.00 0.00 C ATOM 160 O TYR 93 19.901 -1.288 30.103 1.00 0.00 O ATOM 161 N LEU 94 18.161 -0.251 29.170 1.00 0.00 N ATOM 162 CA LEU 94 17.196 -1.240 29.692 1.00 0.00 C ATOM 163 C LEU 94 17.273 -2.512 28.876 1.00 0.00 C ATOM 164 O LEU 94 17.237 -2.410 27.629 1.00 0.00 O ATOM 165 N THR 95 17.376 -3.675 29.533 1.00 0.00 N ATOM 166 CA THR 95 17.524 -4.904 28.748 1.00 0.00 C ATOM 167 C THR 95 16.238 -5.649 28.554 1.00 0.00 C ATOM 168 O THR 95 16.262 -6.853 28.232 1.00 0.00 O ATOM 169 N PRO 96 15.125 -4.988 28.787 1.00 0.00 N ATOM 170 CA PRO 96 13.868 -5.698 28.632 1.00 0.00 C ATOM 171 C PRO 96 13.202 -5.961 29.962 1.00 0.00 C ATOM 172 O PRO 96 11.940 -5.988 30.051 1.00 0.00 O ATOM 173 N GLY 97 14.007 -6.179 31.009 1.00 0.00 N ATOM 174 CA GLY 97 13.419 -6.348 32.349 1.00 0.00 C ATOM 175 C GLY 97 14.015 -5.365 33.361 1.00 0.00 C ATOM 176 O GLY 97 13.268 -4.804 34.200 1.00 0.00 O ATOM 177 N VAL 98 15.314 -5.080 33.244 1.00 0.00 N ATOM 178 CA VAL 98 15.949 -4.151 34.170 1.00 0.00 C ATOM 179 C VAL 98 16.938 -3.185 33.496 1.00 0.00 C ATOM 180 O VAL 98 17.288 -3.356 32.318 1.00 0.00 O ATOM 181 N VAL 99 17.398 -2.212 34.273 1.00 0.00 N ATOM 182 CA VAL 99 18.362 -1.263 33.744 1.00 0.00 C ATOM 183 C VAL 99 19.747 -1.829 34.022 1.00 0.00 C ATOM 184 O VAL 99 20.016 -2.285 35.162 1.00 0.00 O ATOM 185 N THR 100 20.623 -1.874 33.014 1.00 0.00 N ATOM 186 CA THR 100 21.981 -2.380 33.260 1.00 0.00 C ATOM 187 C THR 100 22.991 -1.396 32.722 1.00 0.00 C ATOM 188 O THR 100 22.709 -0.637 31.793 1.00 0.00 O ATOM 189 N PRO 101 24.191 -1.407 33.274 1.00 0.00 N ATOM 190 CA PRO 101 25.250 -0.501 32.840 1.00 0.00 C ATOM 191 C PRO 101 25.540 -0.820 31.401 1.00 0.00 C ATOM 192 O PRO 101 25.588 -2.019 30.979 1.00 0.00 O ATOM 193 N ASP 102 25.749 0.255 30.653 1.00 0.00 N ATOM 194 CA ASP 102 26.023 0.176 29.235 1.00 0.00 C ATOM 195 C ASP 102 27.498 -0.071 29.000 1.00 0.00 C ATOM 196 O ASP 102 28.351 0.633 29.541 1.00 0.00 O ATOM 197 N GLY 103 27.789 -1.065 28.200 1.00 0.00 N ATOM 198 CA GLY 103 29.196 -1.367 27.862 1.00 0.00 C ATOM 199 C GLY 103 29.653 -0.471 26.689 1.00 0.00 C ATOM 200 O GLY 103 28.944 -0.400 25.670 1.00 0.00 O ATOM 201 N GLN 104 30.790 0.197 26.847 1.00 0.00 N ATOM 202 CA GLN 104 31.298 1.052 25.789 1.00 0.00 C ATOM 203 C GLN 104 32.386 0.304 25.041 1.00 0.00 C ATOM 204 O GLN 104 32.795 -0.788 25.486 1.00 0.00 O ATOM 205 N ARG 105 32.863 0.832 23.905 1.00 0.00 N ATOM 206 CA ARG 105 33.864 0.078 23.144 1.00 0.00 C ATOM 207 C ARG 105 34.314 0.826 21.923 1.00 0.00 C ATOM 208 O ARG 105 34.218 2.044 21.947 1.00 0.00 O ATOM 209 N HIS 106 34.785 0.143 20.864 1.00 0.00 N ATOM 210 CA HIS 106 35.254 0.908 19.680 1.00 0.00 C ATOM 211 C HIS 106 34.278 1.769 18.927 1.00 0.00 C ATOM 212 O HIS 106 34.691 2.632 18.190 1.00 0.00 O ATOM 213 N ASP 107 32.999 1.574 19.125 1.00 0.00 N ATOM 214 CA ASP 107 32.001 2.366 18.408 1.00 0.00 C ATOM 215 C ASP 107 31.024 3.056 19.371 1.00 0.00 C ATOM 216 O ASP 107 29.948 3.450 18.941 1.00 0.00 O ATOM 217 N LYS 108 31.386 3.187 20.643 1.00 0.00 N ATOM 218 CA LYS 108 30.448 3.780 21.624 1.00 0.00 C ATOM 219 C LYS 108 31.351 4.389 22.689 1.00 0.00 C ATOM 220 O LYS 108 32.138 3.632 23.352 1.00 0.00 O ATOM 221 N PHE 109 31.244 5.701 22.904 1.00 0.00 N ATOM 222 CA PHE 109 32.133 6.349 23.866 1.00 0.00 C ATOM 223 C PHE 109 31.428 7.537 24.462 1.00 0.00 C ATOM 224 O PHE 109 30.373 7.937 23.979 1.00 0.00 O ATOM 225 N GLU 110 32.034 8.137 25.499 1.00 0.00 N ATOM 226 CA GLU 110 31.378 9.243 26.170 1.00 0.00 C ATOM 227 C GLU 110 32.247 10.476 26.190 1.00 0.00 C ATOM 228 O GLU 110 33.496 10.424 25.924 1.00 0.00 O ATOM 229 N VAL 111 31.617 11.609 26.448 1.00 0.00 N ATOM 230 CA VAL 111 32.392 12.863 26.565 1.00 0.00 C ATOM 231 C VAL 111 31.554 13.840 27.395 1.00 0.00 C ATOM 232 O VAL 111 30.327 13.660 27.634 1.00 0.00 O ATOM 233 N VAL 112 32.216 14.919 27.804 1.00 0.00 N ATOM 234 CA VAL 112 31.526 15.977 28.514 1.00 0.00 C ATOM 235 C VAL 112 31.560 17.216 27.611 1.00 0.00 C ATOM 236 O VAL 112 32.572 17.505 26.980 1.00 0.00 O ATOM 237 N GLN 113 30.443 17.925 27.495 1.00 0.00 N ATOM 238 CA GLN 113 30.423 19.144 26.712 1.00 0.00 C ATOM 239 C GLN 113 30.135 20.294 27.678 1.00 0.00 C ATOM 240 O GLN 113 29.224 20.202 28.519 1.00 0.00 O ATOM 241 N LYS 114 30.956 21.350 27.554 1.00 0.00 N ATOM 242 CA LYS 114 30.851 22.575 28.355 1.00 0.00 C ATOM 243 C LYS 114 30.454 23.746 27.450 1.00 0.00 C ATOM 244 O LYS 114 30.279 24.872 27.909 1.00 0.00 O ATOM 245 N GLY 118 30.308 23.465 26.159 1.00 0.00 N ATOM 246 CA GLY 118 29.880 24.478 25.165 1.00 0.00 C ATOM 247 C GLY 118 28.402 24.830 25.410 1.00 0.00 C ATOM 248 O GLY 118 27.681 25.143 24.457 1.00 0.00 O ATOM 249 N ALA 119 27.938 24.750 26.665 1.00 0.00 N ATOM 250 CA ALA 119 26.534 25.047 26.961 1.00 0.00 C ATOM 251 C ALA 119 26.310 25.732 28.299 1.00 0.00 C ATOM 252 O ALA 119 27.241 25.981 29.058 1.00 0.00 O ATOM 253 N PRO 120 25.050 26.032 28.578 1.00 0.00 N ATOM 254 CA PRO 120 24.665 26.693 29.828 1.00 0.00 C ATOM 255 C PRO 120 24.868 25.706 30.992 1.00 0.00 C ATOM 256 O PRO 120 25.433 26.051 32.051 1.00 0.00 O ATOM 257 N THR 121 24.423 24.476 30.762 1.00 0.00 N ATOM 258 CA THR 121 24.563 23.395 31.723 1.00 0.00 C ATOM 259 C THR 121 25.535 22.340 31.139 1.00 0.00 C ATOM 260 O THR 121 25.480 22.045 29.948 1.00 0.00 O ATOM 261 N ASP 122 26.450 21.797 31.951 1.00 0.00 N ATOM 262 CA ASP 122 27.360 20.788 31.374 1.00 0.00 C ATOM 263 C ASP 122 26.482 19.629 30.894 1.00 0.00 C ATOM 264 O ASP 122 25.398 19.407 31.433 1.00 0.00 O ATOM 265 N VAL 123 26.945 18.927 29.864 1.00 0.00 N ATOM 266 CA VAL 123 26.197 17.830 29.312 1.00 0.00 C ATOM 267 C VAL 123 27.103 16.605 29.190 1.00 0.00 C ATOM 268 O VAL 123 28.237 16.709 28.705 1.00 0.00 O ATOM 269 N MET 124 26.644 15.486 29.715 1.00 0.00 N ATOM 270 CA MET 124 27.381 14.225 29.575 1.00 0.00 C ATOM 271 C MET 124 26.781 13.555 28.344 1.00 0.00 C ATOM 272 O MET 124 25.580 13.442 28.236 1.00 0.00 O ATOM 273 N ALA 125 27.612 13.142 27.407 1.00 0.00 N ATOM 274 CA ALA 125 27.138 12.647 26.144 1.00 0.00 C ATOM 275 C ALA 125 27.559 11.225 25.828 1.00 0.00 C ATOM 276 O ALA 125 28.681 10.848 26.165 1.00 0.00 O ATOM 277 N TYR 126 26.677 10.479 25.187 1.00 0.00 N ATOM 278 CA TYR 126 26.951 9.117 24.715 1.00 0.00 C ATOM 279 C TYR 126 27.003 9.239 23.197 1.00 0.00 C ATOM 280 O TYR 126 26.008 9.624 22.544 1.00 0.00 O ATOM 281 N GLU 127 28.120 8.826 22.596 1.00 0.00 N ATOM 282 CA GLU 127 28.309 8.950 21.129 1.00 0.00 C ATOM 283 C GLU 127 28.330 7.582 20.468 1.00 0.00 C ATOM 284 O GLU 127 29.132 6.723 20.863 1.00 0.00 O ATOM 285 N PHE 128 27.485 7.369 19.486 1.00 0.00 N ATOM 286 CA PHE 128 27.457 6.116 18.752 1.00 0.00 C ATOM 287 C PHE 128 28.188 6.409 17.417 1.00 0.00 C ATOM 288 O PHE 128 27.750 7.295 16.625 1.00 0.00 O ATOM 289 N THR 129 29.239 5.646 17.133 1.00 0.00 N ATOM 290 CA THR 129 30.093 5.875 15.972 1.00 0.00 C ATOM 291 C THR 129 30.366 4.567 15.249 1.00 0.00 C ATOM 292 O THR 129 31.430 3.947 15.454 1.00 0.00 O ATOM 293 N GLU 130 29.418 4.120 14.432 1.00 0.00 N ATOM 294 CA GLU 130 28.129 4.775 14.164 1.00 0.00 C ATOM 295 C GLU 130 27.087 4.032 14.966 1.00 0.00 C ATOM 296 O GLU 130 27.414 3.040 15.617 1.00 0.00 O ATOM 297 N PRO 131 25.832 4.452 14.853 1.00 0.00 N ATOM 298 CA PRO 131 24.745 3.774 15.497 1.00 0.00 C ATOM 299 C PRO 131 24.256 2.570 14.660 1.00 0.00 C ATOM 300 O PRO 131 24.417 2.550 13.410 1.00 0.00 O ATOM 301 N HIS 132 23.794 1.528 15.339 1.00 0.00 N ATOM 302 CA HIS 132 23.360 0.323 14.631 1.00 0.00 C ATOM 303 C HIS 132 21.945 -0.043 14.992 1.00 0.00 C ATOM 304 O HIS 132 21.394 0.420 16.008 1.00 0.00 O ATOM 305 N GLU 133 21.315 -0.925 14.196 1.00 0.00 N ATOM 306 CA GLU 133 19.967 -1.349 14.581 1.00 0.00 C ATOM 307 C GLU 133 19.901 -1.892 15.989 1.00 0.00 C ATOM 308 O GLU 133 18.902 -1.635 16.713 1.00 0.00 O ATOM 309 N VAL 134 20.918 -2.634 16.405 1.00 0.00 N ATOM 310 CA VAL 134 20.929 -3.226 17.735 1.00 0.00 C ATOM 311 C VAL 134 20.959 -2.176 18.880 1.00 0.00 C ATOM 312 O VAL 134 20.798 -2.533 20.080 1.00 0.00 O ATOM 313 N VAL 135 21.237 -0.910 18.529 1.00 0.00 N ATOM 314 CA VAL 135 21.257 0.181 19.508 1.00 0.00 C ATOM 315 C VAL 135 19.880 0.699 19.860 1.00 0.00 C ATOM 316 O VAL 135 19.760 1.547 20.727 1.00 0.00 O ATOM 317 N LYS 136 18.852 0.237 19.160 1.00 0.00 N ATOM 318 CA LYS 136 17.463 0.625 19.448 1.00 0.00 C ATOM 319 C LYS 136 17.211 0.339 20.950 1.00 0.00 C ATOM 320 O LYS 136 17.691 -0.690 21.480 1.00 0.00 O ATOM 321 N GLY 137 16.498 1.191 21.644 1.00 0.00 N ATOM 322 CA GLY 137 16.271 0.871 23.069 1.00 0.00 C ATOM 323 C GLY 137 16.133 2.100 23.926 1.00 0.00 C ATOM 324 O GLY 137 16.099 3.240 23.385 1.00 0.00 O ATOM 325 N GLU 138 16.088 1.915 25.256 1.00 0.00 N ATOM 326 CA GLU 138 15.863 3.009 26.223 1.00 0.00 C ATOM 327 C GLU 138 17.123 3.206 27.025 1.00 0.00 C ATOM 328 O GLU 138 17.719 2.202 27.441 1.00 0.00 O ATOM 329 N TRP 139 17.565 4.468 27.178 1.00 0.00 N ATOM 330 CA TRP 139 18.821 4.768 27.862 1.00 0.00 C ATOM 331 C TRP 139 18.577 5.753 29.039 1.00 0.00 C ATOM 332 O TRP 139 17.626 6.510 29.025 1.00 0.00 O ATOM 333 N ARG 140 19.431 5.743 30.036 1.00 0.00 N ATOM 334 CA ARG 140 19.290 6.738 31.140 1.00 0.00 C ATOM 335 C ARG 140 20.697 6.927 31.664 1.00 0.00 C ATOM 336 O ARG 140 21.588 6.102 31.365 1.00 0.00 O ATOM 337 N LEU 141 20.924 7.966 32.475 1.00 0.00 N ATOM 338 CA LEU 141 22.251 8.176 33.056 1.00 0.00 C ATOM 339 C LEU 141 22.064 8.140 34.602 1.00 0.00 C ATOM 340 O LEU 141 20.950 8.360 35.114 1.00 0.00 O ATOM 341 N MET 142 23.110 7.788 35.333 1.00 0.00 N ATOM 342 CA MET 142 22.957 7.723 36.800 1.00 0.00 C ATOM 343 C MET 142 24.295 8.029 37.415 1.00 0.00 C ATOM 344 O MET 142 25.343 8.011 36.753 1.00 0.00 O ATOM 345 N VAL 143 24.269 8.319 38.709 1.00 0.00 N ATOM 346 CA VAL 143 25.519 8.581 39.341 1.00 0.00 C ATOM 347 C VAL 143 25.341 8.225 40.817 1.00 0.00 C ATOM 348 O VAL 143 24.251 8.328 41.341 1.00 0.00 O ATOM 349 N PHE 144 26.415 7.766 41.441 1.00 0.00 N ATOM 350 CA PHE 144 26.445 7.449 42.882 1.00 0.00 C ATOM 351 C PHE 144 27.300 8.656 43.261 1.00 0.00 C ATOM 352 O PHE 144 28.496 8.733 42.896 1.00 0.00 O ATOM 353 N GLN 145 26.701 9.640 43.899 1.00 0.00 N ATOM 354 CA GLN 145 27.503 10.814 44.225 1.00 0.00 C ATOM 355 C GLN 145 27.188 11.195 45.651 1.00 0.00 C ATOM 356 O GLN 145 26.022 11.456 45.968 1.00 0.00 O ATOM 357 N GLY 146 28.207 11.263 46.502 1.00 0.00 N ATOM 358 CA GLY 146 27.922 11.555 47.908 1.00 0.00 C ATOM 359 C GLY 146 27.409 10.179 48.391 1.00 0.00 C ATOM 360 O GLY 146 28.007 9.136 48.062 1.00 0.00 O ATOM 361 N ASP 147 26.300 10.135 49.116 1.00 0.00 N ATOM 362 CA ASP 147 25.819 8.846 49.598 1.00 0.00 C ATOM 363 C ASP 147 24.614 8.211 48.904 1.00 0.00 C ATOM 364 O ASP 147 24.105 7.178 49.358 1.00 0.00 O ATOM 365 N ARG 148 24.150 8.793 47.799 1.00 0.00 N ATOM 366 CA ARG 148 22.998 8.199 47.151 1.00 0.00 C ATOM 367 C ARG 148 23.133 8.051 45.681 1.00 0.00 C ATOM 368 O ARG 148 24.073 8.552 45.073 1.00 0.00 O ATOM 369 N LEU 149 22.145 7.348 45.147 1.00 0.00 N ATOM 370 CA LEU 149 22.048 7.071 43.727 1.00 0.00 C ATOM 371 C LEU 149 21.158 8.133 43.123 1.00 0.00 C ATOM 372 O LEU 149 20.054 8.414 43.640 1.00 0.00 O ATOM 373 N LEU 150 21.631 8.774 42.059 1.00 0.00 N ATOM 374 CA LEU 150 20.798 9.747 41.434 1.00 0.00 C ATOM 375 C LEU 150 20.511 9.170 40.043 1.00 0.00 C ATOM 376 O LEU 150 21.430 8.682 39.400 1.00 0.00 O ATOM 377 N ALA 151 19.271 9.244 39.588 1.00 0.00 N ATOM 378 CA ALA 151 18.917 8.682 38.276 1.00 0.00 C ATOM 379 C ALA 151 18.270 9.731 37.391 1.00 0.00 C ATOM 380 O ALA 151 17.959 10.849 37.846 1.00 0.00 O ATOM 381 N GLU 152 18.049 9.389 36.128 1.00 0.00 N ATOM 382 CA GLU 152 17.444 10.353 35.231 1.00 0.00 C ATOM 383 C GLU 152 16.266 9.696 34.604 1.00 0.00 C ATOM 384 O GLU 152 16.073 8.510 34.746 1.00 0.00 O ATOM 385 N LYS 153 15.530 10.493 33.844 1.00 0.00 N ATOM 386 CA LYS 153 14.454 9.966 33.075 1.00 0.00 C ATOM 387 C LYS 153 15.138 9.260 31.851 1.00 0.00 C ATOM 388 O LYS 153 16.331 9.483 31.571 1.00 0.00 O ATOM 389 N SER 154 14.376 8.449 31.116 1.00 0.00 N ATOM 390 CA SER 154 14.955 7.716 30.005 1.00 0.00 C ATOM 391 C SER 154 14.739 8.445 28.674 1.00 0.00 C ATOM 392 O SER 154 13.833 9.300 28.536 1.00 0.00 O ATOM 393 N PHE 155 15.606 8.134 27.720 1.00 0.00 N ATOM 394 CA PHE 155 15.463 8.613 26.333 1.00 0.00 C ATOM 395 C PHE 155 15.338 7.342 25.518 1.00 0.00 C ATOM 396 O PHE 155 16.141 6.412 25.667 1.00 0.00 O ATOM 397 N ASP 156 14.334 7.275 24.645 1.00 0.00 N ATOM 398 CA ASP 156 14.130 6.057 23.848 1.00 0.00 C ATOM 399 C ASP 156 14.642 6.375 22.459 1.00 0.00 C ATOM 400 O ASP 156 14.246 7.420 21.899 1.00 0.00 O ATOM 401 N VAL 157 15.508 5.518 21.910 1.00 0.00 N ATOM 402 CA VAL 157 16.039 5.759 20.549 1.00 0.00 C ATOM 403 C VAL 157 15.465 4.681 19.651 1.00 0.00 C ATOM 404 O VAL 157 15.496 3.495 19.992 1.00 0.00 O ATOM 405 N ARG 158 14.969 5.073 18.504 1.00 0.00 N ATOM 406 CA ARG 158 14.436 4.090 17.599 1.00 0.00 C ATOM 407 C ARG 158 15.360 4.216 16.377 1.00 0.00 C ATOM 408 O ARG 158 15.482 5.296 15.847 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 392 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 52.52 58.9 146 62.1 235 ARMSMC SECONDARY STRUCTURE . . 36.54 60.3 78 67.8 115 ARMSMC SURFACE . . . . . . . . 56.80 62.1 95 60.9 156 ARMSMC BURIED . . . . . . . . 43.45 52.9 51 64.6 79 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 92 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 82 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 51 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 34 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 3 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.23 (Number of atoms: 98) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.23 98 81.7 120 CRMSCA CRN = ALL/NP . . . . . 0.0738 CRMSCA SECONDARY STRUCTURE . . 6.93 54 91.5 59 CRMSCA SURFACE . . . . . . . . 7.61 62 78.5 79 CRMSCA BURIED . . . . . . . . 6.53 36 87.8 41 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.15 392 66.6 589 CRMSMC SECONDARY STRUCTURE . . 6.96 216 74.2 291 CRMSMC SURFACE . . . . . . . . 7.52 248 64.1 387 CRMSMC BURIED . . . . . . . . 6.47 144 71.3 202 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 464 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 390 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 264 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 292 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 172 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.15 392 41.5 944 CRMSALL SECONDARY STRUCTURE . . 6.96 216 43.2 500 CRMSALL SURFACE . . . . . . . . 7.52 248 40.8 608 CRMSALL BURIED . . . . . . . . 6.47 144 42.9 336 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.120 1.000 0.500 98 81.7 120 ERRCA SECONDARY STRUCTURE . . 5.990 1.000 0.500 54 91.5 59 ERRCA SURFACE . . . . . . . . 6.372 1.000 0.500 62 78.5 79 ERRCA BURIED . . . . . . . . 5.687 1.000 0.500 36 87.8 41 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.044 1.000 0.500 392 66.6 589 ERRMC SECONDARY STRUCTURE . . 6.005 1.000 0.500 216 74.2 291 ERRMC SURFACE . . . . . . . . 6.306 1.000 0.500 248 64.1 387 ERRMC BURIED . . . . . . . . 5.593 1.000 0.500 144 71.3 202 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 464 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 390 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 264 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 292 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 172 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.044 1.000 0.500 392 41.5 944 ERRALL SECONDARY STRUCTURE . . 6.005 1.000 0.500 216 43.2 500 ERRALL SURFACE . . . . . . . . 6.306 1.000 0.500 248 40.8 608 ERRALL BURIED . . . . . . . . 5.593 1.000 0.500 144 42.9 336 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 4 18 50 84 98 120 DISTCA CA (P) 1.67 3.33 15.00 41.67 70.00 120 DISTCA CA (RMS) 0.64 1.30 2.37 3.51 5.30 DISTCA ALL (N) 5 16 74 202 342 392 944 DISTALL ALL (P) 0.53 1.69 7.84 21.40 36.23 944 DISTALL ALL (RMS) 0.64 1.34 2.33 3.48 5.35 DISTALL END of the results output