####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 88 ( 352), selected 88 , name T0568AL285_1-D1 # Molecule2: number of CA atoms 120 ( 944), selected 88 , name T0568-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0568AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 50 103 - 157 4.82 7.21 LCS_AVERAGE: 30.02 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 134 - 147 1.82 8.07 LCS_AVERAGE: 8.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 134 - 145 0.81 8.27 LCS_AVERAGE: 5.43 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 88 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 58 N 58 4 8 12 3 4 5 6 6 8 10 10 11 17 20 21 21 23 24 27 29 45 46 48 LCS_GDT I 59 I 59 4 8 15 3 4 5 6 8 8 11 12 14 17 22 24 31 43 44 50 59 61 63 69 LCS_GDT Q 60 Q 60 4 8 20 3 4 5 6 7 8 11 12 14 19 22 26 39 43 44 50 65 66 69 73 LCS_GDT Q 61 Q 61 5 8 21 3 4 5 6 7 14 20 28 35 39 47 53 63 68 72 74 76 77 79 80 LCS_GDT T 62 T 62 5 8 21 3 4 5 6 9 15 17 24 31 41 45 56 63 68 72 74 76 78 79 80 LCS_GDT T 63 T 63 5 8 21 3 4 5 7 9 15 18 21 30 34 39 52 56 66 71 74 76 78 79 80 LCS_GDT E 64 E 64 5 11 21 3 4 6 10 14 17 22 33 42 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 65 V 65 5 11 21 3 4 5 8 16 28 33 38 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT P 66 P 66 3 11 21 3 4 5 8 14 28 33 38 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT A 67 A 67 6 11 21 3 5 6 8 18 28 32 38 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT K 68 K 68 6 11 21 5 5 9 16 23 31 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 69 L 69 6 11 21 5 5 6 12 19 25 34 40 44 51 57 63 68 69 72 74 76 78 79 80 LCS_GDT G 70 G 70 6 11 21 5 5 6 12 21 30 35 40 44 49 57 63 68 69 72 74 76 78 79 80 LCS_GDT T 71 T 71 6 11 21 5 11 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT K 72 K 72 6 11 21 5 9 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT F 73 F 73 6 11 21 8 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT G 74 G 74 6 11 21 4 4 6 8 10 20 28 34 42 50 58 63 68 69 72 74 76 78 79 80 LCS_GDT M 75 M 75 5 10 21 4 13 19 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT R 76 R 76 5 10 21 4 14 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT Y 77 Y 77 5 10 21 4 4 5 22 27 32 36 40 44 50 58 63 68 69 72 74 76 78 79 80 LCS_GDT Q 78 Q 78 5 10 21 4 4 5 7 26 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 79 L 79 5 10 21 4 4 14 20 26 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT S 80 S 80 5 10 21 4 4 6 15 21 27 35 40 44 51 58 63 68 69 72 74 76 78 79 80 LCS_GDT K 82 K 82 3 7 21 0 3 5 10 14 17 23 28 35 41 48 58 64 68 71 73 76 78 79 80 LCS_GDT Q 83 Q 83 3 7 18 0 3 4 6 7 11 12 13 23 24 28 36 40 44 56 59 68 69 70 75 LCS_GDT E 84 E 84 3 6 17 0 3 4 6 7 8 10 12 13 13 14 15 16 16 23 39 50 54 66 70 LCS_GDT G 85 G 85 4 5 8 3 3 4 5 5 7 11 15 28 29 45 55 57 63 69 73 76 78 79 80 LCS_GDT D 86 D 86 4 6 8 3 3 4 6 9 24 29 38 43 49 57 63 68 69 72 74 76 78 79 80 LCS_GDT T 87 T 87 4 6 8 3 4 5 6 9 11 17 33 37 48 54 61 68 69 72 74 76 78 79 80 LCS_GDT P 88 P 88 4 6 8 3 4 5 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 89 L 89 4 6 8 3 4 6 23 27 32 36 40 44 51 58 63 68 69 72 74 76 78 79 80 LCS_GDT T 90 T 90 4 6 8 3 4 5 6 17 24 33 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 91 L 91 4 6 14 3 4 6 12 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 98 V 98 10 11 17 7 8 10 10 10 10 13 19 24 26 30 43 56 65 71 73 76 78 79 80 LCS_GDT V 99 V 99 10 11 17 7 9 10 10 10 10 13 17 21 24 28 30 47 58 65 72 75 78 79 80 LCS_GDT T 100 T 100 10 11 17 7 9 10 10 10 10 11 12 17 23 26 37 44 56 65 70 75 78 79 80 LCS_GDT P 101 P 101 10 11 17 7 9 10 10 10 10 11 12 14 18 20 22 26 34 40 44 55 62 65 75 LCS_GDT D 102 D 102 10 11 17 7 9 10 10 10 10 11 12 15 19 24 28 30 35 40 57 67 69 75 78 LCS_GDT G 103 G 103 10 11 50 7 9 10 10 10 10 11 12 19 23 26 29 40 51 58 63 69 73 76 79 LCS_GDT Q 104 Q 104 10 11 50 7 9 10 10 10 12 16 19 21 39 50 55 65 68 71 74 76 78 79 80 LCS_GDT R 105 R 105 10 11 50 6 9 10 10 10 14 20 22 29 40 51 60 66 69 72 74 76 78 79 80 LCS_GDT H 106 H 106 10 11 50 3 9 10 10 20 28 31 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT D 107 D 107 10 11 50 5 9 10 10 17 21 24 29 36 41 51 59 66 69 72 73 76 77 79 80 LCS_GDT K 108 K 108 5 11 50 5 5 5 12 17 21 25 31 40 48 56 63 68 69 72 74 76 78 79 80 LCS_GDT F 109 F 109 5 6 50 5 5 6 10 14 21 24 31 40 48 56 63 68 69 72 74 76 78 79 80 LCS_GDT E 110 E 110 5 6 50 5 5 6 10 14 19 28 36 44 49 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 111 V 111 5 6 50 5 5 5 6 12 16 21 30 37 44 56 63 68 69 72 74 76 78 79 80 LCS_GDT V 112 V 112 4 6 50 3 4 10 15 19 28 31 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT Q 113 Q 113 4 6 50 3 4 5 13 17 28 31 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT K 114 K 114 4 5 50 3 4 6 10 18 24 29 34 40 49 56 63 68 69 72 74 76 78 79 80 LCS_GDT P 120 P 120 3 3 50 0 13 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT T 121 T 121 3 8 50 0 3 4 9 14 23 31 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT D 122 D 122 5 9 50 4 4 6 10 14 17 31 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 123 V 123 5 9 50 4 4 6 10 14 18 31 36 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT M 124 M 124 5 9 50 4 5 6 10 14 17 20 33 40 48 58 63 68 69 72 74 76 78 79 80 LCS_GDT A 125 A 125 5 9 50 4 5 6 10 14 17 20 36 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT Y 126 Y 126 5 9 50 4 5 6 10 14 17 26 36 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT E 127 E 127 5 9 50 4 5 10 11 17 28 31 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT F 128 F 128 5 9 50 4 5 6 8 13 17 26 37 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT T 129 T 129 5 9 50 3 4 6 15 22 29 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT E 130 E 130 4 9 50 3 4 4 7 9 14 22 34 42 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT P 131 P 131 4 8 50 3 4 5 17 23 29 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT H 132 H 132 4 7 50 3 4 5 5 8 22 27 34 44 51 58 63 68 69 72 74 76 78 79 80 LCS_GDT E 133 E 133 4 13 50 3 4 5 5 6 7 21 27 34 47 51 57 62 66 70 74 76 78 79 80 LCS_GDT V 134 V 134 12 14 50 8 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 135 V 135 12 14 50 8 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT K 136 K 136 12 14 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT G 137 G 137 12 14 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT E 138 E 138 12 14 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT W 139 W 139 12 14 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT R 140 R 140 12 14 50 8 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 141 L 141 12 14 50 5 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT M 142 M 142 12 14 50 6 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 143 V 143 12 14 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT F 144 F 144 12 14 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT Q 145 Q 145 12 14 50 3 5 17 22 26 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT G 146 G 146 4 14 50 3 4 7 15 20 28 32 39 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT D 147 D 147 4 14 50 3 4 5 9 14 18 30 36 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT R 148 R 148 4 10 50 3 4 11 17 25 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 149 L 149 4 10 50 3 4 4 9 22 29 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT L 150 L 150 8 10 50 5 9 13 14 21 25 33 39 44 51 57 63 68 69 72 74 76 78 79 80 LCS_GDT A 151 A 151 8 10 50 5 9 13 15 23 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT E 152 E 152 8 10 50 5 9 13 21 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT K 153 K 153 8 10 50 5 12 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT S 154 S 154 8 10 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT F 155 F 155 8 10 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT D 156 D 156 8 10 50 6 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_GDT V 157 V 157 8 10 50 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 LCS_AVERAGE LCS_A: 14.54 ( 5.43 8.16 30.02 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 16 20 23 27 32 36 40 44 52 58 63 68 69 72 74 76 78 79 80 GDT PERCENT_AT 7.50 13.33 16.67 19.17 22.50 26.67 30.00 33.33 36.67 43.33 48.33 52.50 56.67 57.50 60.00 61.67 63.33 65.00 65.83 66.67 GDT RMS_LOCAL 0.38 0.64 0.89 1.09 1.40 1.77 2.13 2.42 2.81 3.53 3.75 3.91 4.17 4.24 4.46 4.65 4.81 5.17 5.12 5.27 GDT RMS_ALL_AT 8.05 8.32 8.10 8.18 8.21 8.04 7.85 7.81 7.60 7.27 7.30 7.33 7.31 7.34 7.32 7.28 7.27 7.17 7.21 7.18 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 58 N 58 19.606 4 0.039 0.039 21.145 0.000 0.000 LGA I 59 I 59 14.680 4 0.148 0.148 16.040 0.000 0.000 LGA Q 60 Q 60 13.586 5 0.108 0.108 13.995 0.000 0.000 LGA Q 61 Q 61 7.960 5 0.075 0.075 10.528 2.976 1.323 LGA T 62 T 62 7.445 3 0.047 0.047 7.445 15.714 8.980 LGA T 63 T 63 9.136 3 0.057 0.057 9.834 2.381 1.361 LGA E 64 E 64 6.706 5 0.188 0.188 7.222 18.929 8.413 LGA V 65 V 65 5.254 3 0.621 0.621 5.649 25.000 14.286 LGA P 66 P 66 5.183 3 0.039 0.039 5.488 26.190 14.966 LGA A 67 A 67 5.605 1 0.368 0.368 5.723 25.119 20.095 LGA K 68 K 68 3.411 5 0.111 0.111 3.641 55.833 24.815 LGA L 69 L 69 3.852 4 0.040 0.040 3.852 46.667 23.333 LGA G 70 G 70 3.328 0 0.042 0.042 3.328 51.786 51.786 LGA T 71 T 71 1.327 3 0.114 0.114 1.491 81.429 46.531 LGA K 72 K 72 2.233 5 0.035 0.035 2.233 66.786 29.683 LGA F 73 F 73 2.369 7 0.134 0.134 3.328 57.381 20.866 LGA G 74 G 74 4.911 0 0.301 0.301 4.911 42.024 42.024 LGA M 75 M 75 3.059 4 0.076 0.076 3.672 55.714 27.857 LGA R 76 R 76 1.304 7 0.049 0.049 2.868 69.048 25.108 LGA Y 77 Y 77 3.168 8 0.148 0.148 3.168 65.238 21.746 LGA Q 78 Q 78 2.312 5 0.038 0.038 2.530 62.857 27.937 LGA L 79 L 79 2.213 4 0.094 0.094 3.931 57.738 28.869 LGA S 80 S 80 4.547 2 0.071 0.071 5.836 31.071 20.714 LGA K 82 K 82 11.587 5 0.220 0.220 14.705 0.119 0.053 LGA Q 83 Q 83 18.378 5 0.094 0.094 19.871 0.000 0.000 LGA E 84 E 84 23.704 5 0.214 0.214 24.681 0.000 0.000 LGA G 85 G 85 10.492 0 0.609 0.609 10.768 0.357 0.357 LGA D 86 D 86 5.545 4 0.160 0.160 6.600 20.595 10.298 LGA T 87 T 87 6.506 3 0.024 0.024 6.633 25.238 14.422 LGA P 88 P 88 2.055 3 0.621 0.621 3.553 59.524 34.014 LGA L 89 L 89 2.323 4 0.075 0.075 4.100 57.857 28.929 LGA T 90 T 90 4.009 3 0.081 0.081 4.509 42.143 24.082 LGA L 91 L 91 2.570 4 0.213 0.213 4.066 50.357 25.179 LGA V 98 V 98 11.517 3 0.066 0.066 11.994 0.000 0.000 LGA V 99 V 99 12.856 3 0.084 0.084 14.178 0.000 0.000 LGA T 100 T 100 12.548 3 0.049 0.049 15.216 0.000 0.000 LGA P 101 P 101 17.446 3 0.022 0.022 19.284 0.000 0.000 LGA D 102 D 102 16.471 4 0.041 0.041 16.471 0.000 0.000 LGA G 103 G 103 15.608 0 0.136 0.136 15.608 0.000 0.000 LGA Q 104 Q 104 10.219 5 0.034 0.034 12.130 0.119 0.053 LGA R 105 R 105 9.889 7 0.137 0.137 9.889 2.619 0.952 LGA H 106 H 106 6.345 6 0.531 0.531 8.022 9.762 3.905 LGA D 107 D 107 10.821 4 0.682 0.682 10.821 0.714 0.357 LGA K 108 K 108 9.373 5 0.092 0.092 10.387 0.476 0.212 LGA F 109 F 109 9.616 7 0.051 0.051 9.616 1.548 0.563 LGA E 110 E 110 8.399 5 0.119 0.119 9.470 2.619 1.164 LGA V 111 V 111 8.975 3 0.381 0.381 9.014 3.452 1.973 LGA V 112 V 112 7.702 3 0.059 0.059 8.255 6.548 3.741 LGA Q 113 Q 113 7.687 5 0.072 0.072 7.749 7.143 3.175 LGA K 114 K 114 9.056 5 0.050 0.050 9.056 4.524 2.011 LGA P 120 P 120 2.686 3 0.653 0.653 2.686 59.048 33.741 LGA T 121 T 121 5.482 3 0.597 0.597 7.005 22.619 12.925 LGA D 122 D 122 7.238 4 0.698 0.698 7.238 14.405 7.202 LGA V 123 V 123 6.970 3 0.095 0.095 8.341 9.524 5.442 LGA M 124 M 124 7.959 4 0.138 0.138 7.959 8.571 4.286 LGA A 125 A 125 7.592 1 0.049 0.049 8.191 6.548 5.238 LGA Y 126 Y 126 7.659 8 0.109 0.109 7.659 10.952 3.651 LGA E 127 E 127 5.959 5 0.086 0.086 6.712 16.310 7.249 LGA F 128 F 128 6.460 7 0.064 0.064 6.460 20.476 7.446 LGA T 129 T 129 3.992 3 0.623 0.623 5.403 33.095 18.912 LGA E 130 E 130 6.179 5 0.017 0.017 6.179 27.976 12.434 LGA P 131 P 131 3.770 3 0.608 0.608 4.804 38.810 22.177 LGA H 132 H 132 6.439 6 0.084 0.084 7.850 19.643 7.857 LGA E 133 E 133 5.812 5 0.421 0.421 5.812 29.048 12.910 LGA V 134 V 134 1.367 3 0.266 0.266 1.939 83.810 47.891 LGA V 135 V 135 1.141 3 0.127 0.127 1.565 83.810 47.891 LGA K 136 K 136 0.546 5 0.020 0.020 0.605 92.857 41.270 LGA G 137 G 137 0.941 0 0.021 0.021 0.960 90.476 90.476 LGA E 138 E 138 1.130 5 0.036 0.036 1.130 85.952 38.201 LGA W 139 W 139 0.506 10 0.226 0.226 0.758 95.238 27.211 LGA R 140 R 140 1.710 7 0.101 0.101 1.941 72.857 26.494 LGA L 141 L 141 1.383 4 0.058 0.058 1.469 85.952 42.976 LGA M 142 M 142 0.875 4 0.012 0.012 1.095 88.214 44.107 LGA V 143 V 143 0.510 3 0.093 0.093 0.763 92.857 53.061 LGA F 144 F 144 0.738 7 0.100 0.100 1.443 85.952 31.255 LGA Q 145 Q 145 2.564 5 0.201 0.201 2.777 69.286 30.794 LGA G 146 G 146 5.423 0 0.443 0.443 6.726 22.024 22.024 LGA D 147 D 147 7.319 4 0.027 0.027 7.319 15.476 7.738 LGA R 148 R 148 2.710 7 0.609 0.609 3.599 51.905 18.874 LGA L 149 L 149 3.513 4 0.110 0.110 3.513 50.119 25.060 LGA L 150 L 150 4.241 4 0.619 0.619 5.072 37.619 18.810 LGA A 151 A 151 2.980 1 0.059 0.059 3.051 63.333 50.667 LGA E 152 E 152 1.924 5 0.069 0.069 2.541 68.929 30.635 LGA K 153 K 153 1.011 5 0.120 0.120 1.051 85.952 38.201 LGA S 154 S 154 1.179 2 0.139 0.139 2.291 77.381 51.587 LGA F 155 F 155 1.427 7 0.110 0.110 1.655 77.143 28.052 LGA D 156 D 156 2.151 4 0.182 0.182 2.755 64.881 32.440 LGA V 157 V 157 1.518 3 0.024 0.024 1.635 77.143 44.082 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 88 352 352 100.00 711 352 49.51 120 SUMMARY(RMSD_GDC): 7.095 7.024 7.024 26.598 13.895 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 88 120 4.0 40 2.42 31.875 27.026 1.588 LGA_LOCAL RMSD: 2.419 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.805 Number of assigned atoms: 88 Std_ASGN_ATOMS RMSD: 7.095 Standard rmsd on all 88 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.148349 * X + 0.066980 * Y + 0.986664 * Z + 55.628540 Y_new = 0.935676 * X + -0.313494 * Y + 0.161965 * Z + 9.794349 Z_new = 0.320162 * X + 0.947225 * Y + -0.016165 * Z + 5.485818 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.728036 -0.325901 1.587860 [DEG: 99.0091 -18.6727 90.9777 ] ZXZ: 1.733499 1.586962 0.325945 [DEG: 99.3222 90.9262 18.6753 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0568AL285_1-D1 REMARK 2: T0568-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0568AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 88 120 4.0 40 2.42 27.026 7.10 REMARK ---------------------------------------------------------- MOLECULE T0568AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2p9rA ATOM 1 N ASN 58 20.613 17.011 42.238 1.00 0.00 N ATOM 2 CA ASN 58 21.234 16.770 40.937 1.00 0.00 C ATOM 3 C ASN 58 20.206 16.120 40.029 1.00 0.00 C ATOM 4 O ASN 58 19.389 15.310 40.480 1.00 0.00 O ATOM 5 N ILE 59 20.236 16.491 38.757 1.00 0.00 N ATOM 6 CA ILE 59 19.324 15.903 37.787 1.00 0.00 C ATOM 7 C ILE 59 19.928 15.879 36.383 1.00 0.00 C ATOM 8 O ILE 59 20.898 16.586 36.093 1.00 0.00 O ATOM 9 N GLN 60 19.362 15.042 35.522 1.00 0.00 N ATOM 10 CA GLN 60 19.844 14.899 34.157 1.00 0.00 C ATOM 11 C GLN 60 18.809 15.372 33.134 1.00 0.00 C ATOM 12 O GLN 60 17.605 15.240 33.345 1.00 0.00 O ATOM 13 N GLN 61 19.293 15.922 32.025 1.00 0.00 N ATOM 14 CA GLN 61 18.432 16.386 30.949 1.00 0.00 C ATOM 15 C GLN 61 19.082 16.099 29.605 1.00 0.00 C ATOM 16 O GLN 61 20.265 16.360 29.416 1.00 0.00 O ATOM 17 N THR 62 18.307 15.557 28.676 1.00 0.00 N ATOM 18 CA THR 62 18.808 15.307 27.335 1.00 0.00 C ATOM 19 C THR 62 18.157 16.386 26.472 1.00 0.00 C ATOM 20 O THR 62 17.129 16.947 26.857 1.00 0.00 O ATOM 21 N THR 63 18.759 16.693 25.323 1.00 0.00 N ATOM 22 CA THR 63 18.200 17.710 24.443 1.00 0.00 C ATOM 23 C THR 63 16.953 17.183 23.723 1.00 0.00 C ATOM 24 O THR 63 16.200 17.961 23.138 1.00 0.00 O ATOM 25 N GLU 64 16.735 15.870 23.781 1.00 0.00 N ATOM 26 CA GLU 64 15.568 15.241 23.159 1.00 0.00 C ATOM 27 C GLU 64 15.125 14.007 23.936 1.00 0.00 C ATOM 28 O GLU 64 15.874 13.472 24.754 1.00 0.00 O ATOM 29 N VAL 65 13.901 13.562 23.679 1.00 0.00 N ATOM 30 CA VAL 65 13.365 12.376 24.331 1.00 0.00 C ATOM 31 C VAL 65 13.567 11.181 23.396 1.00 0.00 C ATOM 32 O VAL 65 13.724 10.041 23.838 1.00 0.00 O ATOM 33 N PRO 66 13.560 11.462 22.096 1.00 0.00 N ATOM 34 CA PRO 66 13.727 10.430 21.075 1.00 0.00 C ATOM 35 C PRO 66 14.783 10.817 20.037 1.00 0.00 C ATOM 36 O PRO 66 14.695 11.875 19.417 1.00 0.00 O ATOM 37 N ALA 67 15.785 9.959 19.865 1.00 0.00 N ATOM 38 CA ALA 67 16.833 10.188 18.872 1.00 0.00 C ATOM 39 C ALA 67 16.743 9.121 17.797 1.00 0.00 C ATOM 40 O ALA 67 16.269 8.008 18.046 1.00 0.00 O ATOM 41 N LYS 68 17.206 9.469 16.603 1.00 0.00 N ATOM 42 CA LYS 68 17.212 8.564 15.461 1.00 0.00 C ATOM 43 C LYS 68 18.662 8.152 15.188 1.00 0.00 C ATOM 44 O LYS 68 19.596 8.867 15.576 1.00 0.00 O ATOM 45 N LEU 69 18.872 6.989 14.537 1.00 0.00 N ATOM 46 CA LEU 69 20.225 6.516 14.220 1.00 0.00 C ATOM 47 C LEU 69 21.052 7.647 13.620 1.00 0.00 C ATOM 48 O LEU 69 20.526 8.469 12.874 1.00 0.00 O ATOM 49 N GLY 70 22.337 7.692 13.951 1.00 0.00 N ATOM 50 CA GLY 70 23.194 8.731 13.412 1.00 0.00 C ATOM 51 C GLY 70 23.200 10.063 14.146 1.00 0.00 C ATOM 52 O GLY 70 24.029 10.927 13.852 1.00 0.00 O ATOM 53 N THR 71 22.292 10.251 15.098 1.00 0.00 N ATOM 54 CA THR 71 22.258 11.515 15.816 1.00 0.00 C ATOM 55 C THR 71 23.144 11.510 17.044 1.00 0.00 C ATOM 56 O THR 71 23.477 10.459 17.586 1.00 0.00 O ATOM 57 N LYS 72 23.534 12.695 17.484 1.00 0.00 N ATOM 58 CA LYS 72 24.368 12.796 18.664 1.00 0.00 C ATOM 59 C LYS 72 23.491 13.130 19.862 1.00 0.00 C ATOM 60 O LYS 72 22.780 14.131 19.848 1.00 0.00 O ATOM 61 N PHE 73 23.521 12.271 20.878 1.00 0.00 N ATOM 62 CA PHE 73 22.744 12.493 22.098 1.00 0.00 C ATOM 63 C PHE 73 23.468 13.536 22.956 1.00 0.00 C ATOM 64 O PHE 73 24.650 13.390 23.249 1.00 0.00 O ATOM 65 N GLY 74 22.770 14.599 23.333 1.00 0.00 N ATOM 66 CA GLY 74 23.366 15.643 24.164 1.00 0.00 C ATOM 67 C GLY 74 22.632 15.725 25.495 1.00 0.00 C ATOM 68 O GLY 74 21.403 15.838 25.530 1.00 0.00 O ATOM 69 N MET 75 23.372 15.648 26.596 1.00 0.00 N ATOM 70 CA MET 75 22.724 15.724 27.891 1.00 0.00 C ATOM 71 C MET 75 23.489 16.627 28.834 1.00 0.00 C ATOM 72 O MET 75 24.655 16.947 28.605 1.00 0.00 O ATOM 73 N ARG 76 22.814 17.053 29.890 1.00 0.00 N ATOM 74 CA ARG 76 23.415 17.942 30.867 1.00 0.00 C ATOM 75 C ARG 76 23.208 17.429 32.275 1.00 0.00 C ATOM 76 O ARG 76 22.154 16.880 32.593 1.00 0.00 O ATOM 77 N TYR 77 24.226 17.578 33.110 1.00 0.00 N ATOM 78 CA TYR 77 24.096 17.176 34.498 1.00 0.00 C ATOM 79 C TYR 77 24.018 18.493 35.256 1.00 0.00 C ATOM 80 O TYR 77 24.878 19.368 35.097 1.00 0.00 O ATOM 81 N GLN 78 22.967 18.654 36.051 1.00 0.00 N ATOM 82 CA GLN 78 22.785 19.884 36.797 1.00 0.00 C ATOM 83 C GLN 78 22.690 19.653 38.296 1.00 0.00 C ATOM 84 O GLN 78 22.182 18.640 38.755 1.00 0.00 O ATOM 85 N LEU 79 23.209 20.603 39.057 1.00 0.00 N ATOM 86 CA LEU 79 23.158 20.515 40.497 1.00 0.00 C ATOM 87 C LEU 79 22.735 21.847 41.075 1.00 0.00 C ATOM 88 O LEU 79 23.070 22.903 40.553 1.00 0.00 O ATOM 89 N SER 80 21.984 21.787 42.159 1.00 0.00 N ATOM 90 CA SER 80 21.514 22.992 42.802 1.00 0.00 C ATOM 91 C SER 80 21.102 22.643 44.214 1.00 0.00 C ATOM 92 O SER 80 21.078 21.471 44.593 1.00 0.00 O ATOM 93 N LYS 82 20.808 23.670 45.001 1.00 0.00 N ATOM 94 CA LYS 82 20.375 23.478 46.374 1.00 0.00 C ATOM 95 C LYS 82 18.964 24.032 46.468 1.00 0.00 C ATOM 96 O LYS 82 18.416 24.523 45.477 1.00 0.00 O ATOM 97 N GLN 83 18.373 23.949 47.656 1.00 0.00 N ATOM 98 CA GLN 83 17.038 24.489 47.854 1.00 0.00 C ATOM 99 C GLN 83 17.246 25.952 47.497 1.00 0.00 C ATOM 100 O GLN 83 18.324 26.485 47.740 1.00 0.00 O ATOM 101 N GLU 84 16.234 26.591 46.920 1.00 0.00 N ATOM 102 CA GLU 84 16.327 27.994 46.501 1.00 0.00 C ATOM 103 C GLU 84 16.980 28.030 45.123 1.00 0.00 C ATOM 104 O GLU 84 17.325 29.096 44.600 1.00 0.00 O ATOM 105 N GLY 85 29.294 21.277 41.878 1.00 0.00 N ATOM 106 CA GLY 85 29.526 19.985 42.501 1.00 0.00 C ATOM 107 C GLY 85 30.464 19.073 41.723 1.00 0.00 C ATOM 108 O GLY 85 30.518 19.111 40.493 1.00 0.00 O ATOM 109 N ASP 86 31.216 18.262 42.457 1.00 0.00 N ATOM 110 CA ASP 86 32.121 17.313 41.842 1.00 0.00 C ATOM 111 C ASP 86 31.340 16.007 41.807 1.00 0.00 C ATOM 112 O ASP 86 31.055 15.418 42.852 1.00 0.00 O ATOM 113 N THR 87 30.974 15.583 40.599 1.00 0.00 N ATOM 114 CA THR 87 30.212 14.358 40.384 1.00 0.00 C ATOM 115 C THR 87 31.162 13.191 40.115 1.00 0.00 C ATOM 116 O THR 87 32.019 13.269 39.241 1.00 0.00 O ATOM 117 N PRO 88 31.013 12.089 40.854 1.00 0.00 N ATOM 118 CA PRO 88 31.884 10.922 40.664 1.00 0.00 C ATOM 119 C PRO 88 31.627 10.086 39.401 1.00 0.00 C ATOM 120 O PRO 88 32.560 9.522 38.820 1.00 0.00 O ATOM 121 N LEU 89 30.373 10.000 38.972 1.00 0.00 N ATOM 122 CA LEU 89 30.060 9.182 37.810 1.00 0.00 C ATOM 123 C LEU 89 28.788 9.530 37.038 1.00 0.00 C ATOM 124 O LEU 89 27.763 9.899 37.619 1.00 0.00 O ATOM 125 N THR 90 28.875 9.413 35.717 1.00 0.00 N ATOM 126 CA THR 90 27.729 9.618 34.846 1.00 0.00 C ATOM 127 C THR 90 27.960 8.727 33.633 1.00 0.00 C ATOM 128 O THR 90 29.054 8.699 33.067 1.00 0.00 O ATOM 129 N LEU 91 26.952 7.968 33.246 1.00 0.00 N ATOM 130 CA LEU 91 27.123 7.111 32.087 1.00 0.00 C ATOM 131 C LEU 91 25.821 6.875 31.361 1.00 0.00 C ATOM 132 O LEU 91 24.739 7.164 31.879 1.00 0.00 O ATOM 133 N VAL 98 25.951 6.378 30.136 1.00 0.00 N ATOM 134 CA VAL 98 24.811 6.065 29.295 1.00 0.00 C ATOM 135 C VAL 98 24.747 4.558 29.169 1.00 0.00 C ATOM 136 O VAL 98 25.757 3.917 28.893 1.00 0.00 O ATOM 137 N VAL 99 23.562 3.995 29.381 1.00 0.00 N ATOM 138 CA VAL 99 23.362 2.561 29.257 1.00 0.00 C ATOM 139 C VAL 99 22.395 2.316 28.101 1.00 0.00 C ATOM 140 O VAL 99 21.361 2.965 28.018 1.00 0.00 O ATOM 141 N THR 100 22.732 1.385 27.210 1.00 0.00 N ATOM 142 CA THR 100 21.880 1.075 26.057 1.00 0.00 C ATOM 143 C THR 100 20.822 0.015 26.395 1.00 0.00 C ATOM 144 O THR 100 20.794 -0.495 27.516 1.00 0.00 O ATOM 145 N PRO 101 19.951 -0.344 25.429 1.00 0.00 N ATOM 146 CA PRO 101 18.898 -1.343 25.679 1.00 0.00 C ATOM 147 C PRO 101 19.352 -2.716 26.166 1.00 0.00 C ATOM 148 O PRO 101 18.574 -3.441 26.788 1.00 0.00 O ATOM 149 N ASP 102 20.598 -3.076 25.868 1.00 0.00 N ATOM 150 CA ASP 102 21.147 -4.368 26.270 1.00 0.00 C ATOM 151 C ASP 102 21.735 -4.328 27.683 1.00 0.00 C ATOM 152 O ASP 102 22.064 -5.369 28.258 1.00 0.00 O ATOM 153 N GLY 103 21.872 -3.127 28.238 1.00 0.00 N ATOM 154 CA GLY 103 22.428 -2.992 29.571 1.00 0.00 C ATOM 155 C GLY 103 23.916 -2.699 29.528 1.00 0.00 C ATOM 156 O GLY 103 24.631 -2.932 30.498 1.00 0.00 O ATOM 157 N GLN 104 24.386 -2.183 28.400 1.00 0.00 N ATOM 158 CA GLN 104 25.799 -1.863 28.243 1.00 0.00 C ATOM 159 C GLN 104 26.107 -0.407 28.568 1.00 0.00 C ATOM 160 O GLN 104 25.288 0.484 28.317 1.00 0.00 O ATOM 161 N ARG 105 27.290 -0.173 29.128 1.00 0.00 N ATOM 162 CA ARG 105 27.731 1.179 29.416 1.00 0.00 C ATOM 163 C ARG 105 28.526 1.566 28.184 1.00 0.00 C ATOM 164 O ARG 105 29.713 1.281 28.073 1.00 0.00 O ATOM 165 N HIS 106 27.851 2.210 27.249 1.00 0.00 N ATOM 166 CA HIS 106 28.472 2.603 26.000 1.00 0.00 C ATOM 167 C HIS 106 29.289 3.887 26.110 1.00 0.00 C ATOM 168 O HIS 106 30.024 4.239 25.188 1.00 0.00 O ATOM 169 N ASP 107 29.159 4.570 27.245 1.00 0.00 N ATOM 170 CA ASP 107 29.876 5.815 27.503 1.00 0.00 C ATOM 171 C ASP 107 29.880 6.076 29.004 1.00 0.00 C ATOM 172 O ASP 107 28.919 5.741 29.704 1.00 0.00 O ATOM 173 N LYS 108 30.945 6.702 29.487 1.00 0.00 N ATOM 174 CA LYS 108 31.088 6.950 30.906 1.00 0.00 C ATOM 175 C LYS 108 32.149 8.013 31.197 1.00 0.00 C ATOM 176 O LYS 108 33.251 7.989 30.655 1.00 0.00 O ATOM 177 N PHE 109 31.804 8.937 32.078 1.00 0.00 N ATOM 178 CA PHE 109 32.691 10.022 32.448 1.00 0.00 C ATOM 179 C PHE 109 32.858 10.013 33.953 1.00 0.00 C ATOM 180 O PHE 109 31.878 9.938 34.695 1.00 0.00 O ATOM 181 N GLU 110 34.098 10.087 34.411 1.00 0.00 N ATOM 182 CA GLU 110 34.331 10.062 35.837 1.00 0.00 C ATOM 183 C GLU 110 34.915 11.351 36.402 1.00 0.00 C ATOM 184 O GLU 110 35.497 12.166 35.685 1.00 0.00 O ATOM 185 N VAL 111 34.704 11.524 37.703 1.00 0.00 N ATOM 186 CA VAL 111 35.208 12.652 38.479 1.00 0.00 C ATOM 187 C VAL 111 35.288 13.997 37.776 1.00 0.00 C ATOM 188 O VAL 111 36.369 14.560 37.612 1.00 0.00 O ATOM 189 N VAL 112 34.139 14.517 37.371 1.00 0.00 N ATOM 190 CA VAL 112 34.086 15.808 36.707 1.00 0.00 C ATOM 191 C VAL 112 33.409 16.814 37.637 1.00 0.00 C ATOM 192 O VAL 112 32.562 16.448 38.451 1.00 0.00 O ATOM 193 N GLN 113 33.794 18.076 37.526 1.00 0.00 N ATOM 194 CA GLN 113 33.222 19.105 38.375 1.00 0.00 C ATOM 195 C GLN 113 32.349 20.050 37.573 1.00 0.00 C ATOM 196 O GLN 113 32.757 20.570 36.537 1.00 0.00 O ATOM 197 N LYS 114 31.141 20.275 38.063 1.00 0.00 N ATOM 198 CA LYS 114 30.205 21.164 37.400 1.00 0.00 C ATOM 199 C LYS 114 30.684 22.625 37.405 1.00 0.00 C ATOM 200 O LYS 114 31.351 23.064 38.341 1.00 0.00 O ATOM 201 N PRO 120 30.354 23.364 36.353 1.00 0.00 N ATOM 202 CA PRO 120 30.719 24.780 36.252 1.00 0.00 C ATOM 203 C PRO 120 29.428 25.557 35.987 1.00 0.00 C ATOM 204 O PRO 120 28.750 25.319 34.990 1.00 0.00 O ATOM 205 N THR 121 29.093 26.488 36.875 1.00 0.00 N ATOM 206 CA THR 121 27.869 27.255 36.711 1.00 0.00 C ATOM 207 C THR 121 26.687 26.395 37.128 1.00 0.00 C ATOM 208 O THR 121 25.534 26.679 36.788 1.00 0.00 O ATOM 209 N ASP 122 26.977 25.329 37.867 1.00 0.00 N ATOM 210 CA ASP 122 25.925 24.433 38.311 1.00 0.00 C ATOM 211 C ASP 122 25.645 23.269 37.367 1.00 0.00 C ATOM 212 O ASP 122 24.823 22.405 37.672 1.00 0.00 O ATOM 213 N VAL 123 26.331 23.225 36.230 1.00 0.00 N ATOM 214 CA VAL 123 26.096 22.147 35.272 1.00 0.00 C ATOM 215 C VAL 123 27.271 21.810 34.369 1.00 0.00 C ATOM 216 O VAL 123 28.256 22.543 34.299 1.00 0.00 O ATOM 217 N MET 124 27.147 20.680 33.681 1.00 0.00 N ATOM 218 CA MET 124 28.152 20.245 32.727 1.00 0.00 C ATOM 219 C MET 124 27.436 19.520 31.598 1.00 0.00 C ATOM 220 O MET 124 26.528 18.726 31.840 1.00 0.00 O ATOM 221 N ALA 125 27.845 19.803 30.368 1.00 0.00 N ATOM 222 CA ALA 125 27.239 19.191 29.192 1.00 0.00 C ATOM 223 C ALA 125 28.102 18.079 28.592 1.00 0.00 C ATOM 224 O ALA 125 29.335 18.159 28.579 1.00 0.00 O ATOM 225 N TYR 126 27.441 17.034 28.105 1.00 0.00 N ATOM 226 CA TYR 126 28.128 15.915 27.475 1.00 0.00 C ATOM 227 C TYR 126 27.396 15.595 26.176 1.00 0.00 C ATOM 228 O TYR 126 26.249 16.007 25.971 1.00 0.00 O ATOM 229 N GLU 127 28.060 14.859 25.297 1.00 0.00 N ATOM 230 CA GLU 127 27.432 14.455 24.059 1.00 0.00 C ATOM 231 C GLU 127 27.952 13.076 23.701 1.00 0.00 C ATOM 232 O GLU 127 29.088 12.717 24.032 1.00 0.00 O ATOM 233 N PHE 128 27.098 12.286 23.059 1.00 0.00 N ATOM 234 CA PHE 128 27.479 10.953 22.644 1.00 0.00 C ATOM 235 C PHE 128 26.917 10.653 21.260 1.00 0.00 C ATOM 236 O PHE 128 25.704 10.499 21.091 1.00 0.00 O ATOM 237 N THR 129 27.798 10.560 20.254 1.00 0.00 N ATOM 238 CA THR 129 27.383 10.279 18.877 1.00 0.00 C ATOM 239 C THR 129 26.894 8.840 18.695 1.00 0.00 C ATOM 240 O THR 129 27.661 7.897 18.851 1.00 0.00 O ATOM 241 N GLU 130 25.618 8.674 18.376 1.00 0.00 N ATOM 242 CA GLU 130 25.068 7.341 18.142 1.00 0.00 C ATOM 243 C GLU 130 25.624 6.823 16.804 1.00 0.00 C ATOM 244 O GLU 130 25.896 7.612 15.893 1.00 0.00 O ATOM 245 N PRO 131 25.810 5.512 16.688 1.00 0.00 N ATOM 246 CA PRO 131 26.312 4.946 15.436 1.00 0.00 C ATOM 247 C PRO 131 25.210 4.967 14.380 1.00 0.00 C ATOM 248 O PRO 131 24.099 5.443 14.633 1.00 0.00 O ATOM 249 N HIS 132 25.515 4.455 13.194 1.00 0.00 N ATOM 250 CA HIS 132 24.527 4.437 12.122 1.00 0.00 C ATOM 251 C HIS 132 23.534 3.292 12.287 1.00 0.00 C ATOM 252 O HIS 132 22.398 3.394 11.833 1.00 0.00 O ATOM 253 N GLU 133 23.965 2.214 12.943 1.00 0.00 N ATOM 254 CA GLU 133 23.110 1.043 13.186 1.00 0.00 C ATOM 255 C GLU 133 23.125 0.709 14.680 1.00 0.00 C ATOM 256 O GLU 133 23.589 -0.357 15.078 1.00 0.00 O ATOM 257 N VAL 134 22.605 1.612 15.525 1.00 0.00 N ATOM 258 CA VAL 134 22.582 1.389 16.972 1.00 0.00 C ATOM 259 C VAL 134 21.418 0.530 17.449 1.00 0.00 C ATOM 260 O VAL 134 20.393 0.448 16.786 1.00 0.00 O ATOM 261 N VAL 135 21.584 -0.111 18.600 1.00 0.00 N ATOM 262 CA VAL 135 20.500 -0.904 19.170 1.00 0.00 C ATOM 263 C VAL 135 19.371 0.097 19.382 1.00 0.00 C ATOM 264 O VAL 135 19.614 1.236 19.782 1.00 0.00 O ATOM 265 N LYS 136 18.143 -0.310 19.095 1.00 0.00 N ATOM 266 CA LYS 136 17.028 0.590 19.281 1.00 0.00 C ATOM 267 C LYS 136 16.251 0.223 20.525 1.00 0.00 C ATOM 268 O LYS 136 16.217 -0.936 20.924 1.00 0.00 O ATOM 269 N GLY 137 15.646 1.226 21.148 1.00 0.00 N ATOM 270 CA GLY 137 14.892 0.988 22.364 1.00 0.00 C ATOM 271 C GLY 137 15.212 2.038 23.408 1.00 0.00 C ATOM 272 O GLY 137 15.681 3.131 23.088 1.00 0.00 O ATOM 273 N GLU 138 14.976 1.708 24.668 1.00 0.00 N ATOM 274 CA GLU 138 15.223 2.670 25.729 1.00 0.00 C ATOM 275 C GLU 138 16.596 2.602 26.375 1.00 0.00 C ATOM 276 O GLU 138 17.050 1.550 26.833 1.00 0.00 O ATOM 277 N TRP 139 17.253 3.754 26.384 1.00 0.00 N ATOM 278 CA TRP 139 18.568 3.903 26.987 1.00 0.00 C ATOM 279 C TRP 139 18.349 4.656 28.292 1.00 0.00 C ATOM 280 O TRP 139 17.222 4.910 28.698 1.00 0.00 O ATOM 281 N ARG 140 19.436 5.020 28.949 1.00 0.00 N ATOM 282 CA ARG 140 19.311 5.816 30.152 1.00 0.00 C ATOM 283 C ARG 140 20.626 6.419 30.576 1.00 0.00 C ATOM 284 O ARG 140 21.681 5.807 30.432 1.00 0.00 O ATOM 285 N LEU 141 20.554 7.651 31.062 1.00 0.00 N ATOM 286 CA LEU 141 21.726 8.345 31.548 1.00 0.00 C ATOM 287 C LEU 141 21.643 8.177 33.043 1.00 0.00 C ATOM 288 O LEU 141 20.596 8.397 33.631 1.00 0.00 O ATOM 289 N MET 142 22.740 7.777 33.663 1.00 0.00 N ATOM 290 CA MET 142 22.753 7.581 35.098 1.00 0.00 C ATOM 291 C MET 142 23.858 8.395 35.728 1.00 0.00 C ATOM 292 O MET 142 25.004 8.331 35.295 1.00 0.00 O ATOM 293 N VAL 143 23.497 9.161 36.753 1.00 0.00 N ATOM 294 CA VAL 143 24.439 10.002 37.473 1.00 0.00 C ATOM 295 C VAL 143 24.495 9.570 38.917 1.00 0.00 C ATOM 296 O VAL 143 23.475 9.273 39.538 1.00 0.00 O ATOM 297 N PHE 144 25.702 9.544 39.450 1.00 0.00 N ATOM 298 CA PHE 144 25.904 9.163 40.831 1.00 0.00 C ATOM 299 C PHE 144 26.589 10.312 41.543 1.00 0.00 C ATOM 300 O PHE 144 27.678 10.729 41.145 1.00 0.00 O ATOM 301 N GLN 145 25.941 10.835 42.580 1.00 0.00 N ATOM 302 CA GLN 145 26.498 11.941 43.343 1.00 0.00 C ATOM 303 C GLN 145 27.318 11.408 44.516 1.00 0.00 C ATOM 304 O GLN 145 27.174 10.250 44.920 1.00 0.00 O ATOM 305 N GLY 146 28.195 12.260 45.033 1.00 0.00 N ATOM 306 CA GLY 146 29.071 11.924 46.151 1.00 0.00 C ATOM 307 C GLY 146 28.315 11.328 47.339 1.00 0.00 C ATOM 308 O GLY 146 28.770 10.369 47.957 1.00 0.00 O ATOM 309 N ASP 147 27.159 11.897 47.653 1.00 0.00 N ATOM 310 CA ASP 147 26.357 11.416 48.775 1.00 0.00 C ATOM 311 C ASP 147 25.850 9.985 48.599 1.00 0.00 C ATOM 312 O ASP 147 25.226 9.432 49.500 1.00 0.00 O ATOM 313 N ARG 148 26.120 9.381 47.445 1.00 0.00 N ATOM 314 CA ARG 148 25.670 8.019 47.207 1.00 0.00 C ATOM 315 C ARG 148 24.338 7.950 46.481 1.00 0.00 C ATOM 316 O ARG 148 23.905 6.877 46.066 1.00 0.00 O ATOM 317 N LEU 149 23.688 9.098 46.326 1.00 0.00 N ATOM 318 CA LEU 149 22.415 9.136 45.631 1.00 0.00 C ATOM 319 C LEU 149 22.619 8.974 44.132 1.00 0.00 C ATOM 320 O LEU 149 23.660 9.365 43.592 1.00 0.00 O ATOM 321 N LEU 150 21.641 8.382 43.455 1.00 0.00 N ATOM 322 CA LEU 150 21.744 8.205 42.017 1.00 0.00 C ATOM 323 C LEU 150 20.476 8.662 41.334 1.00 0.00 C ATOM 324 O LEU 150 19.402 8.653 41.930 1.00 0.00 O ATOM 325 N ALA 151 20.603 9.080 40.083 1.00 0.00 N ATOM 326 CA ALA 151 19.442 9.513 39.333 1.00 0.00 C ATOM 327 C ALA 151 19.528 8.981 37.903 1.00 0.00 C ATOM 328 O ALA 151 20.577 9.053 37.258 1.00 0.00 O ATOM 329 N GLU 152 18.421 8.410 37.436 1.00 0.00 N ATOM 330 CA GLU 152 18.328 7.849 36.089 1.00 0.00 C ATOM 331 C GLU 152 17.365 8.645 35.226 1.00 0.00 C ATOM 332 O GLU 152 16.264 8.996 35.650 1.00 0.00 O ATOM 333 N LYS 153 17.793 8.926 34.006 1.00 0.00 N ATOM 334 CA LYS 153 16.983 9.669 33.054 1.00 0.00 C ATOM 335 C LYS 153 16.946 8.876 31.743 1.00 0.00 C ATOM 336 O LYS 153 17.955 8.744 31.062 1.00 0.00 O ATOM 337 N SER 154 15.781 8.317 31.390 1.00 0.00 N ATOM 338 CA SER 154 15.684 7.546 30.147 1.00 0.00 C ATOM 339 C SER 154 15.491 8.399 28.907 1.00 0.00 C ATOM 340 O SER 154 15.100 9.557 28.986 1.00 0.00 O ATOM 341 N PHE 155 15.804 7.806 27.761 1.00 0.00 N ATOM 342 CA PHE 155 15.616 8.435 26.467 1.00 0.00 C ATOM 343 C PHE 155 15.548 7.286 25.481 1.00 0.00 C ATOM 344 O PHE 155 16.057 6.190 25.750 1.00 0.00 O ATOM 345 N ASP 156 14.897 7.495 24.350 1.00 0.00 N ATOM 346 CA ASP 156 14.818 6.392 23.419 1.00 0.00 C ATOM 347 C ASP 156 15.472 6.667 22.079 1.00 0.00 C ATOM 348 O ASP 156 15.700 7.820 21.698 1.00 0.00 O ATOM 349 N VAL 157 15.798 5.582 21.388 1.00 0.00 N ATOM 350 CA VAL 157 16.415 5.636 20.070 1.00 0.00 C ATOM 351 C VAL 157 15.587 4.700 19.189 1.00 0.00 C ATOM 352 O VAL 157 15.534 3.500 19.435 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 352 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.56 60.0 110 46.8 235 ARMSMC SECONDARY STRUCTURE . . 57.82 57.9 57 49.6 115 ARMSMC SURFACE . . . . . . . . 68.85 57.7 78 50.0 156 ARMSMC BURIED . . . . . . . . 32.40 65.6 32 40.5 79 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 92 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 82 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 51 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 51 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 34 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 3 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.10 (Number of atoms: 88) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.10 88 73.3 120 CRMSCA CRN = ALL/NP . . . . . 0.0806 CRMSCA SECONDARY STRUCTURE . . 5.80 48 81.4 59 CRMSCA SURFACE . . . . . . . . 7.75 56 70.9 79 CRMSCA BURIED . . . . . . . . 5.76 32 78.0 41 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.02 352 59.8 589 CRMSMC SECONDARY STRUCTURE . . 5.76 192 66.0 291 CRMSMC SURFACE . . . . . . . . 7.66 224 57.9 387 CRMSMC BURIED . . . . . . . . 5.76 128 63.4 202 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 464 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 390 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 264 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 292 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 172 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.02 352 37.3 944 CRMSALL SECONDARY STRUCTURE . . 5.76 192 38.4 500 CRMSALL SURFACE . . . . . . . . 7.66 224 36.8 608 CRMSALL BURIED . . . . . . . . 5.76 128 38.1 336 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.931 1.000 0.500 88 73.3 120 ERRCA SECONDARY STRUCTURE . . 5.132 1.000 0.500 48 81.4 59 ERRCA SURFACE . . . . . . . . 6.398 1.000 0.500 56 70.9 79 ERRCA BURIED . . . . . . . . 5.114 1.000 0.500 32 78.0 41 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.864 1.000 0.500 352 59.8 589 ERRMC SECONDARY STRUCTURE . . 5.108 1.000 0.500 192 66.0 291 ERRMC SURFACE . . . . . . . . 6.338 1.000 0.500 224 57.9 387 ERRMC BURIED . . . . . . . . 5.036 1.000 0.500 128 63.4 202 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 464 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 390 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 264 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 292 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 172 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.864 1.000 0.500 352 37.3 944 ERRALL SECONDARY STRUCTURE . . 5.108 1.000 0.500 192 38.4 500 ERRALL SURFACE . . . . . . . . 6.338 1.000 0.500 224 36.8 608 ERRALL BURIED . . . . . . . . 5.036 1.000 0.500 128 38.1 336 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 3 17 46 78 88 120 DISTCA CA (P) 0.83 2.50 14.17 38.33 65.00 120 DISTCA CA (RMS) 0.73 1.31 2.32 3.50 5.20 DISTCA ALL (N) 1 8 71 191 308 352 944 DISTALL ALL (P) 0.11 0.85 7.52 20.23 32.63 944 DISTALL ALL (RMS) 0.73 1.57 2.42 3.54 5.01 DISTALL END of the results output