####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 306), selected 39 , name T0565TS117_1_1-D1 # Molecule2: number of CA atoms 304 ( 2409), selected 39 , name T0565-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0565TS117_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 38 - 76 1.95 1.95 LCS_AVERAGE: 12.83 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 38 - 76 1.95 1.95 LCS_AVERAGE: 12.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 51 - 67 0.75 2.76 LCS_AVERAGE: 4.01 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 38 I 38 3 39 39 0 3 3 15 24 34 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 39 S 39 9 39 39 0 13 20 26 30 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT V 40 V 40 9 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT C 41 C 41 9 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT N 42 N 42 9 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 43 L 43 9 39 39 8 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT R 44 R 44 9 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 45 E 45 9 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 46 E 46 9 39 39 3 13 20 28 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT G 47 G 47 9 39 39 0 10 20 26 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 48 K 48 3 39 39 3 3 16 21 32 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT F 49 F 49 4 39 39 3 6 8 15 25 33 35 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 50 T 50 4 39 39 3 4 4 4 5 11 29 36 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 51 S 51 17 39 39 5 16 23 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT G 52 G 52 17 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT M 53 M 53 17 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT S 54 S 54 17 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 55 T 55 17 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 56 Q 56 17 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT A 57 A 57 17 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 58 L 58 17 39 39 7 17 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 59 L 59 17 39 39 7 17 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT G 60 G 60 17 39 39 6 17 25 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT M 61 M 61 17 39 39 7 17 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT P 62 P 62 17 39 39 6 18 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT V 63 V 63 17 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT K 64 K 64 17 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT V 65 V 65 17 39 39 7 17 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT L 66 L 66 17 39 39 6 16 24 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 67 Q 67 17 39 39 3 9 24 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Y 68 Y 68 11 39 39 3 12 24 29 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT N 69 N 69 11 39 39 4 12 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT G 70 G 70 11 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT W 71 W 71 11 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Y 72 Y 72 11 39 39 7 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT E 73 E 73 9 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT I 74 I 74 9 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT Q 75 Q 75 9 39 39 4 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_GDT T 76 T 76 9 39 39 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 LCS_AVERAGE LCS_A: 9.89 ( 4.01 12.83 12.83 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 21 26 31 33 36 37 37 39 39 39 39 39 39 39 39 39 39 39 39 GDT PERCENT_AT 2.96 6.91 8.55 10.20 10.86 11.84 12.17 12.17 12.83 12.83 12.83 12.83 12.83 12.83 12.83 12.83 12.83 12.83 12.83 12.83 GDT RMS_LOCAL 0.36 0.69 0.91 1.18 1.29 1.55 1.67 1.67 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 GDT RMS_ALL_AT 2.03 1.99 1.98 2.07 2.03 1.97 1.97 1.97 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 1.95 # Checking swapping # possible swapping detected: Y 72 Y 72 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 38 I 38 3.886 0 0.069 0.134 10.264 48.452 27.857 LGA S 39 S 39 3.138 0 0.627 0.602 6.133 51.786 41.746 LGA V 40 V 40 1.054 0 0.073 0.105 1.476 83.690 82.721 LGA C 41 C 41 0.794 0 0.116 0.762 2.330 92.857 86.270 LGA N 42 N 42 0.673 0 0.145 0.273 1.280 88.214 90.595 LGA L 43 L 43 0.581 0 0.111 0.201 1.169 92.857 89.405 LGA R 44 R 44 0.751 0 0.118 1.094 3.865 88.214 74.632 LGA E 45 E 45 0.873 0 0.064 0.240 2.681 85.952 78.836 LGA E 46 E 46 2.249 0 0.370 0.656 4.779 56.905 55.661 LGA G 47 G 47 2.746 0 0.333 0.333 2.747 60.952 60.952 LGA K 48 K 48 3.382 0 0.608 0.663 8.284 48.333 34.974 LGA F 49 F 49 5.020 0 0.162 1.349 13.748 36.071 14.199 LGA T 50 T 50 4.722 0 0.141 0.178 8.664 37.738 26.939 LGA S 51 S 51 2.470 0 0.695 0.847 4.455 69.048 58.413 LGA G 52 G 52 0.904 0 0.084 0.084 1.467 90.595 90.595 LGA M 53 M 53 0.414 0 0.093 0.963 2.552 100.000 89.940 LGA S 54 S 54 0.408 0 0.209 0.630 1.075 97.619 92.222 LGA T 55 T 55 0.290 0 0.063 0.067 0.809 100.000 95.918 LGA Q 56 Q 56 0.540 0 0.134 0.560 1.869 92.857 89.577 LGA A 57 A 57 0.403 0 0.155 0.197 0.709 97.619 98.095 LGA L 58 L 58 1.607 0 0.076 0.240 1.857 77.143 75.000 LGA L 59 L 59 1.997 0 0.063 1.285 4.997 68.810 59.821 LGA G 60 G 60 2.319 0 0.082 0.082 2.319 68.810 68.810 LGA M 61 M 61 1.501 0 0.164 0.931 3.126 77.143 70.238 LGA P 62 P 62 1.239 0 0.181 0.225 1.526 83.690 82.789 LGA V 63 V 63 1.114 0 0.101 1.156 3.126 85.952 77.075 LGA K 64 K 64 1.274 0 0.107 0.816 4.307 79.286 67.619 LGA V 65 V 65 1.432 0 0.176 0.160 1.751 77.143 76.531 LGA L 66 L 66 2.595 0 0.634 0.594 4.871 54.643 55.000 LGA Q 67 Q 67 2.500 0 0.356 0.807 10.739 59.881 33.545 LGA Y 68 Y 68 1.778 0 0.127 1.319 12.673 79.643 34.127 LGA N 69 N 69 1.121 0 0.093 1.167 5.353 85.952 67.857 LGA G 70 G 70 0.395 0 0.440 0.440 2.329 88.810 88.810 LGA W 71 W 71 1.132 0 0.135 0.839 10.113 85.952 38.537 LGA Y 72 Y 72 0.607 0 0.060 0.265 3.300 92.976 75.952 LGA E 73 E 73 0.807 0 0.218 0.506 2.102 88.214 79.735 LGA I 74 I 74 0.548 0 0.107 1.322 3.839 92.857 82.440 LGA Q 75 Q 75 0.963 0 0.115 0.310 1.192 90.476 88.466 LGA T 76 T 76 0.892 0 0.148 0.227 1.163 88.214 89.252 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 306 306 100.00 304 SUMMARY(RMSD_GDC): 1.946 1.917 3.542 10.018 8.852 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 304 4.0 37 1.67 10.526 11.595 2.091 LGA_LOCAL RMSD: 1.670 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.965 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 1.946 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.096853 * X + -0.960546 * Y + -0.260710 * Z + 46.464714 Y_new = 0.297014 * X + 0.222113 * Y + -0.928681 * Z + 61.265415 Z_new = 0.949949 * X + -0.167380 * Y + 0.263783 * Z + 13.533700 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.886015 -1.253071 -0.565429 [DEG: 108.0607 -71.7957 -32.3967 ] ZXZ: -0.273687 1.303854 1.745206 [DEG: -15.6811 74.7054 99.9929 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0565TS117_1_1-D1 REMARK 2: T0565-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0565TS117_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 304 4.0 37 1.67 11.595 1.95 REMARK ---------------------------------------------------------- MOLECULE T0565TS117_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0565 REMARK PARENT N/A ATOM 206 N ILE 38 36.000 41.043 18.261 1.00 0.00 N ATOM 207 CA ILE 38 36.857 40.481 19.274 1.00 0.00 C ATOM 208 C ILE 38 37.529 39.309 18.584 1.00 0.00 C ATOM 209 O ILE 38 36.931 38.738 17.671 1.00 0.00 O ATOM 210 CB ILE 38 36.141 40.056 20.549 1.00 0.00 C ATOM 211 CG1 ILE 38 34.856 39.229 20.303 1.00 0.00 C ATOM 212 CG2 ILE 38 35.801 41.317 21.371 1.00 0.00 C ATOM 213 CD1 ILE 38 34.246 38.689 21.599 1.00 0.00 C ATOM 214 N SER 39 38.778 38.942 18.985 1.00 0.00 N ATOM 215 CA SER 39 39.465 37.767 18.481 1.00 0.00 C ATOM 216 C SER 39 40.214 37.244 19.675 1.00 0.00 C ATOM 217 O SER 39 40.389 37.996 20.634 1.00 0.00 O ATOM 218 CB SER 39 40.393 37.943 17.271 1.00 0.00 C ATOM 219 OG SER 39 41.558 38.665 17.617 1.00 0.00 O ATOM 220 N VAL 40 40.556 35.924 19.688 1.00 0.00 N ATOM 221 CA VAL 40 41.699 35.400 20.379 1.00 0.00 C ATOM 222 C VAL 40 42.876 36.123 19.818 1.00 0.00 C ATOM 223 O VAL 40 42.989 36.284 18.602 1.00 0.00 O ATOM 224 CB VAL 40 41.844 33.892 20.247 1.00 0.00 C ATOM 225 CG1 VAL 40 43.153 33.418 20.909 1.00 0.00 C ATOM 226 CG2 VAL 40 40.591 33.237 20.873 1.00 0.00 C ATOM 227 N CYS 41 43.769 36.585 20.706 1.00 0.00 N ATOM 228 CA CYS 41 44.707 37.603 20.370 1.00 0.00 C ATOM 229 C CYS 41 45.935 37.042 20.952 1.00 0.00 C ATOM 230 O CYS 41 45.906 36.426 22.013 1.00 0.00 O ATOM 231 CB CYS 41 44.505 39.000 20.978 1.00 0.00 C ATOM 232 SG CYS 41 42.981 39.803 20.403 1.00 0.00 S ATOM 233 N ASN 42 47.030 37.237 20.224 1.00 0.00 N ATOM 234 CA ASN 42 48.271 36.581 20.425 1.00 0.00 C ATOM 235 C ASN 42 49.162 37.691 20.877 1.00 0.00 C ATOM 236 O ASN 42 49.369 38.624 20.104 1.00 0.00 O ATOM 237 CB ASN 42 48.729 36.080 19.038 1.00 0.00 C ATOM 238 CG ASN 42 48.064 34.736 18.774 1.00 0.00 C ATOM 239 OD1 ASN 42 47.900 33.897 19.658 1.00 0.00 O ATOM 240 ND2 ASN 42 47.636 34.543 17.498 1.00 0.00 N ATOM 241 N LEU 43 49.673 37.639 22.135 1.00 0.00 N ATOM 242 CA LEU 43 50.530 38.660 22.697 1.00 0.00 C ATOM 243 C LEU 43 51.845 37.978 22.921 1.00 0.00 C ATOM 244 O LEU 43 51.833 36.766 23.139 1.00 0.00 O ATOM 245 CB LEU 43 50.075 39.157 24.082 1.00 0.00 C ATOM 246 CG LEU 43 48.774 40.003 24.151 1.00 0.00 C ATOM 247 CD1 LEU 43 47.558 39.567 23.309 1.00 0.00 C ATOM 248 CD2 LEU 43 48.351 40.229 25.613 1.00 0.00 C ATOM 249 N ARG 44 52.986 38.721 22.831 1.00 0.00 N ATOM 250 CA ARG 44 54.329 38.204 22.684 1.00 0.00 C ATOM 251 C ARG 44 55.233 38.972 23.580 1.00 0.00 C ATOM 252 O ARG 44 54.756 39.815 24.323 1.00 0.00 O ATOM 253 CB ARG 44 54.911 38.322 21.253 1.00 0.00 C ATOM 254 CG ARG 44 54.081 37.577 20.205 1.00 0.00 C ATOM 255 CD ARG 44 53.930 36.181 20.726 1.00 0.00 C ATOM 256 NE ARG 44 53.571 35.146 19.757 1.00 0.00 N ATOM 257 CZ ARG 44 52.276 34.714 19.671 1.00 0.00 C ATOM 258 NH1 ARG 44 51.999 34.048 18.482 1.00 0.00 H ATOM 259 NH2 ARG 44 51.282 35.149 20.495 1.00 0.00 H ATOM 260 N GLU 45 56.541 38.631 23.575 1.00 0.00 N ATOM 261 CA GLU 45 57.368 38.823 24.725 1.00 0.00 C ATOM 262 C GLU 45 58.280 39.971 24.486 1.00 0.00 C ATOM 263 O GLU 45 58.640 40.683 25.419 1.00 0.00 O ATOM 264 CB GLU 45 58.277 37.606 24.987 1.00 0.00 C ATOM 265 CG GLU 45 57.493 36.348 25.357 1.00 0.00 C ATOM 266 CD GLU 45 58.452 35.186 25.542 1.00 0.00 C ATOM 267 OE1 GLU 45 59.681 35.368 25.345 1.00 0.00 O ATOM 268 OE2 GLU 45 57.950 34.081 25.869 1.00 0.00 O ATOM 269 N GLU 46 58.684 40.166 23.216 1.00 0.00 N ATOM 270 CA GLU 46 59.866 40.910 22.922 1.00 0.00 C ATOM 271 C GLU 46 59.448 42.230 22.359 1.00 0.00 C ATOM 272 O GLU 46 59.198 43.184 23.086 1.00 0.00 O ATOM 273 CB GLU 46 60.678 40.170 21.856 1.00 0.00 C ATOM 274 CG GLU 46 61.150 38.795 22.308 1.00 0.00 C ATOM 275 CD GLU 46 61.846 38.209 21.107 1.00 0.00 C ATOM 276 OE1 GLU 46 61.924 38.962 20.114 1.00 0.00 O ATOM 277 OE2 GLU 46 62.300 37.041 21.123 1.00 0.00 O ATOM 278 N GLY 47 59.333 42.279 21.021 1.00 0.00 N ATOM 279 CA GLY 47 57.993 42.289 20.545 1.00 0.00 C ATOM 280 C GLY 47 57.852 42.658 19.112 1.00 0.00 C ATOM 281 O GLY 47 56.734 42.573 18.630 1.00 0.00 O ATOM 282 N LYS 48 58.898 43.098 18.375 1.00 0.00 N ATOM 283 CA LYS 48 58.667 43.320 16.959 1.00 0.00 C ATOM 284 C LYS 48 58.656 41.958 16.384 1.00 0.00 C ATOM 285 O LYS 48 57.922 41.663 15.442 1.00 0.00 O ATOM 286 CB LYS 48 59.736 44.145 16.193 1.00 0.00 C ATOM 287 CG LYS 48 59.759 43.931 14.659 1.00 0.00 C ATOM 288 CD LYS 48 60.555 44.989 13.897 1.00 0.00 C ATOM 289 CE LYS 48 60.562 44.771 12.375 1.00 0.00 C ATOM 290 NZ LYS 48 61.311 45.854 11.689 1.00 0.00 N ATOM 291 N PHE 49 59.504 41.121 16.977 1.00 0.00 N ATOM 292 CA PHE 49 59.960 39.923 16.403 1.00 0.00 C ATOM 293 C PHE 49 58.789 39.019 16.435 1.00 0.00 C ATOM 294 O PHE 49 58.443 38.461 15.399 1.00 0.00 O ATOM 295 CB PHE 49 61.039 39.358 17.294 1.00 0.00 C ATOM 296 CG PHE 49 62.328 40.091 17.063 1.00 0.00 C ATOM 297 CD1 PHE 49 63.004 40.831 18.032 1.00 0.00 C ATOM 298 CD2 PHE 49 62.995 39.734 15.926 1.00 0.00 C ATOM 299 CE1 PHE 49 64.369 41.007 17.908 1.00 0.00 C ATOM 300 CE2 PHE 49 64.301 40.076 15.712 1.00 0.00 C ATOM 301 CZ PHE 49 64.998 40.662 16.735 1.00 0.00 C ATOM 302 N THR 50 58.162 38.868 17.628 1.00 0.00 N ATOM 303 CA THR 50 56.863 38.288 17.806 1.00 0.00 C ATOM 304 C THR 50 57.007 36.834 17.475 1.00 0.00 C ATOM 305 O THR 50 56.109 36.278 16.843 1.00 0.00 O ATOM 306 CB THR 50 55.621 38.878 17.097 1.00 0.00 C ATOM 307 OG1 THR 50 55.778 39.149 15.713 1.00 0.00 O ATOM 308 CG2 THR 50 55.227 40.183 17.756 1.00 0.00 C ATOM 309 N SER 51 58.135 36.179 17.864 1.00 0.00 N ATOM 310 CA SER 51 58.327 34.832 17.432 1.00 0.00 C ATOM 311 C SER 51 58.073 33.823 18.513 1.00 0.00 C ATOM 312 O SER 51 57.899 32.652 18.180 1.00 0.00 O ATOM 313 CB SER 51 59.719 34.609 16.835 1.00 0.00 C ATOM 314 OG SER 51 60.703 35.222 17.650 1.00 0.00 O ATOM 315 N GLY 52 58.026 34.210 19.809 1.00 0.00 N ATOM 316 CA GLY 52 57.642 33.266 20.825 1.00 0.00 C ATOM 317 C GLY 52 56.588 33.898 21.667 1.00 0.00 C ATOM 318 O GLY 52 56.685 35.093 21.942 1.00 0.00 O ATOM 319 N MET 53 55.620 33.061 22.132 1.00 0.00 N ATOM 320 CA MET 53 54.288 33.381 22.608 1.00 0.00 C ATOM 321 C MET 53 54.404 33.543 24.086 1.00 0.00 C ATOM 322 O MET 53 55.340 33.009 24.666 1.00 0.00 O ATOM 323 CB MET 53 53.240 32.283 22.316 1.00 0.00 C ATOM 324 CG MET 53 51.773 32.645 22.608 1.00 0.00 C ATOM 325 SD MET 53 50.594 31.454 21.958 1.00 0.00 S ATOM 326 CE MET 53 50.509 31.519 20.150 1.00 0.00 C ATOM 327 N SER 54 53.425 34.226 24.720 1.00 0.00 N ATOM 328 CA SER 54 53.624 34.936 25.950 1.00 0.00 C ATOM 329 C SER 54 52.334 34.708 26.707 1.00 0.00 C ATOM 330 O SER 54 52.322 34.066 27.755 1.00 0.00 O ATOM 331 CB SER 54 53.895 36.432 25.751 1.00 0.00 C ATOM 332 OG SER 54 54.241 37.069 26.964 1.00 0.00 O ATOM 333 N THR 55 51.186 35.163 26.160 1.00 0.00 N ATOM 334 CA THR 55 49.910 34.742 26.671 1.00 0.00 C ATOM 335 C THR 55 48.986 34.970 25.516 1.00 0.00 C ATOM 336 O THR 55 49.410 35.485 24.479 1.00 0.00 O ATOM 337 CB THR 55 49.448 35.419 27.954 1.00 0.00 C ATOM 338 OG1 THR 55 48.293 34.783 28.482 1.00 0.00 O ATOM 339 CG2 THR 55 49.127 36.903 27.742 1.00 0.00 C ATOM 340 N GLN 56 47.707 34.596 25.678 1.00 0.00 N ATOM 341 CA GLN 56 46.759 34.660 24.614 1.00 0.00 C ATOM 342 C GLN 56 45.633 35.249 25.377 1.00 0.00 C ATOM 343 O GLN 56 45.453 34.951 26.560 1.00 0.00 O ATOM 344 CB GLN 56 46.363 33.358 23.875 1.00 0.00 C ATOM 345 CG GLN 56 47.559 32.534 23.354 1.00 0.00 C ATOM 346 CD GLN 56 47.049 31.177 22.881 1.00 0.00 C ATOM 347 OE1 GLN 56 45.857 30.973 22.942 1.00 0.00 O ATOM 348 NE2 GLN 56 47.867 30.206 22.415 1.00 0.00 N ATOM 349 N ALA 57 44.896 36.141 24.715 1.00 0.00 N ATOM 350 CA ALA 57 43.924 36.933 25.386 1.00 0.00 C ATOM 351 C ALA 57 42.728 36.337 24.760 1.00 0.00 C ATOM 352 O ALA 57 42.712 36.112 23.549 1.00 0.00 O ATOM 353 CB ALA 57 43.936 38.447 25.130 1.00 0.00 C ATOM 354 N LEU 58 41.745 36.086 25.630 1.00 0.00 N ATOM 355 CA LEU 58 40.421 35.605 25.365 1.00 0.00 C ATOM 356 C LEU 58 39.674 36.521 24.507 1.00 0.00 C ATOM 357 O LEU 58 39.793 37.715 24.758 1.00 0.00 O ATOM 358 CB LEU 58 39.708 34.340 25.887 1.00 0.00 C ATOM 359 CG LEU 58 40.544 33.355 26.698 1.00 0.00 C ATOM 360 CD1 LEU 58 39.790 32.691 27.868 1.00 0.00 C ATOM 361 CD2 LEU 58 40.993 32.286 25.743 1.00 0.00 C ATOM 362 N LEU 59 38.862 36.044 23.543 1.00 0.00 N ATOM 363 CA LEU 59 37.625 36.723 23.241 1.00 0.00 C ATOM 364 C LEU 59 37.006 37.308 24.464 1.00 0.00 C ATOM 365 O LEU 59 36.538 36.583 25.337 1.00 0.00 O ATOM 366 CB LEU 59 36.513 35.843 22.600 1.00 0.00 C ATOM 367 CG LEU 59 36.853 35.241 21.221 1.00 0.00 C ATOM 368 CD1 LEU 59 35.720 34.477 20.522 1.00 0.00 C ATOM 369 CD2 LEU 59 37.225 36.322 20.259 1.00 0.00 C ATOM 370 N GLY 60 36.985 38.657 24.537 1.00 0.00 N ATOM 371 CA GLY 60 36.048 39.363 25.358 1.00 0.00 C ATOM 372 C GLY 60 36.872 40.115 26.356 1.00 0.00 C ATOM 373 O GLY 60 36.344 40.918 27.124 1.00 0.00 O ATOM 374 N MET 61 38.198 39.889 26.346 1.00 0.00 N ATOM 375 CA MET 61 39.003 40.287 27.449 1.00 0.00 C ATOM 376 C MET 61 39.533 41.615 26.978 1.00 0.00 C ATOM 377 O MET 61 39.613 41.799 25.762 1.00 0.00 O ATOM 378 CB MET 61 40.188 39.351 27.735 1.00 0.00 C ATOM 379 CG MET 61 39.740 37.974 28.232 1.00 0.00 C ATOM 380 SD MET 61 38.903 38.013 29.844 1.00 0.00 S ATOM 381 CE MET 61 38.291 36.302 29.853 1.00 0.00 C ATOM 382 N PRO 62 39.912 42.541 27.833 1.00 0.00 N ATOM 383 CA PRO 62 40.146 43.915 27.378 1.00 0.00 C ATOM 384 C PRO 62 41.569 44.185 27.699 1.00 0.00 C ATOM 385 O PRO 62 42.244 43.273 28.172 1.00 0.00 O ATOM 386 CB PRO 62 39.278 44.778 28.280 1.00 0.00 C ATOM 387 CG PRO 62 39.197 43.954 29.586 1.00 0.00 C ATOM 388 CD PRO 62 39.415 42.502 29.216 1.00 0.00 C ATOM 389 N VAL 63 42.071 45.383 27.359 1.00 0.00 N ATOM 390 CA VAL 63 43.223 45.363 26.545 1.00 0.00 C ATOM 391 C VAL 63 43.611 46.815 26.501 1.00 0.00 C ATOM 392 O VAL 63 42.741 47.671 26.354 1.00 0.00 O ATOM 393 CB VAL 63 42.970 44.653 25.225 1.00 0.00 C ATOM 394 CG1 VAL 63 41.996 45.370 24.267 1.00 0.00 C ATOM 395 CG2 VAL 63 44.311 44.328 24.638 1.00 0.00 C ATOM 396 N LYS 64 44.904 47.138 26.698 1.00 0.00 N ATOM 397 CA LYS 64 45.338 48.500 26.862 1.00 0.00 C ATOM 398 C LYS 64 46.392 48.569 25.827 1.00 0.00 C ATOM 399 O LYS 64 47.113 47.602 25.718 1.00 0.00 O ATOM 400 CB LYS 64 45.964 48.752 28.247 1.00 0.00 C ATOM 401 CG LYS 64 46.436 50.192 28.453 1.00 0.00 C ATOM 402 CD LYS 64 46.706 50.543 29.912 1.00 0.00 C ATOM 403 CE LYS 64 47.155 52.000 30.059 1.00 0.00 C ATOM 404 NZ LYS 64 47.289 52.379 31.480 1.00 0.00 N ATOM 405 N VAL 65 46.541 49.656 25.054 1.00 0.00 N ATOM 406 CA VAL 65 47.190 49.528 23.772 1.00 0.00 C ATOM 407 C VAL 65 48.178 50.628 23.951 1.00 0.00 C ATOM 408 O VAL 65 47.780 51.682 24.451 1.00 0.00 O ATOM 409 CB VAL 65 46.347 49.687 22.526 1.00 0.00 C ATOM 410 CG1 VAL 65 47.254 49.553 21.285 1.00 0.00 C ATOM 411 CG2 VAL 65 45.300 48.561 22.497 1.00 0.00 C ATOM 412 N LEU 66 49.474 50.392 23.636 1.00 0.00 N ATOM 413 CA LEU 66 50.489 51.411 23.703 1.00 0.00 C ATOM 414 C LEU 66 51.155 51.420 22.361 1.00 0.00 C ATOM 415 O LEU 66 50.799 50.624 21.493 1.00 0.00 O ATOM 416 CB LEU 66 51.529 51.204 24.828 1.00 0.00 C ATOM 417 CG LEU 66 50.935 51.043 26.254 1.00 0.00 C ATOM 418 CD1 LEU 66 51.927 50.510 27.293 1.00 0.00 C ATOM 419 CD2 LEU 66 50.345 52.345 26.797 1.00 0.00 C ATOM 420 N GLN 67 52.103 52.358 22.143 1.00 0.00 N ATOM 421 CA GLN 67 52.353 52.865 20.827 1.00 0.00 C ATOM 422 C GLN 67 53.653 52.327 20.391 1.00 0.00 C ATOM 423 O GLN 67 54.685 52.985 20.514 1.00 0.00 O ATOM 424 CB GLN 67 52.546 54.382 20.744 1.00 0.00 C ATOM 425 CG GLN 67 51.275 55.153 21.035 1.00 0.00 C ATOM 426 CD GLN 67 51.613 56.634 20.962 1.00 0.00 C ATOM 427 OE1 GLN 67 52.746 57.051 20.719 1.00 0.00 O ATOM 428 NE2 GLN 67 50.574 57.480 21.187 1.00 0.00 N ATOM 429 N TYR 68 53.642 51.113 19.854 1.00 0.00 N ATOM 430 CA TYR 68 54.861 50.639 19.324 1.00 0.00 C ATOM 431 C TYR 68 54.899 50.781 17.869 1.00 0.00 C ATOM 432 O TYR 68 53.884 50.920 17.192 1.00 0.00 O ATOM 433 CB TYR 68 55.124 49.229 19.662 1.00 0.00 C ATOM 434 CG TYR 68 55.259 49.116 21.104 1.00 0.00 C ATOM 435 CD1 TYR 68 54.125 48.648 21.639 1.00 0.00 C ATOM 436 CD2 TYR 68 56.061 49.860 21.962 1.00 0.00 C ATOM 437 CE1 TYR 68 53.990 48.745 22.960 1.00 0.00 C ATOM 438 CE2 TYR 68 56.032 49.564 23.304 1.00 0.00 C ATOM 439 CZ TYR 68 55.086 48.708 23.742 1.00 0.00 C ATOM 440 OH TYR 68 55.364 47.686 24.654 1.00 0.00 H ATOM 441 N ASN 69 56.167 50.820 17.431 1.00 0.00 N ATOM 442 CA ASN 69 56.791 50.808 16.137 1.00 0.00 C ATOM 443 C ASN 69 56.282 49.885 15.054 1.00 0.00 C ATOM 444 O ASN 69 57.094 49.382 14.278 1.00 0.00 O ATOM 445 CB ASN 69 58.315 50.498 16.286 1.00 0.00 C ATOM 446 CG ASN 69 58.905 51.341 17.436 1.00 0.00 C ATOM 447 OD1 ASN 69 58.553 52.511 17.552 1.00 0.00 O ATOM 448 ND2 ASN 69 59.797 50.775 18.299 1.00 0.00 N ATOM 449 N GLY 70 54.959 49.651 14.911 1.00 0.00 N ATOM 450 CA GLY 70 54.430 48.862 13.829 1.00 0.00 C ATOM 451 C GLY 70 54.188 47.509 14.417 1.00 0.00 C ATOM 452 O GLY 70 54.700 46.510 13.911 1.00 0.00 O ATOM 453 N TRP 71 53.438 47.473 15.542 1.00 0.00 N ATOM 454 CA TRP 71 53.855 46.768 16.718 1.00 0.00 C ATOM 455 C TRP 71 52.913 47.465 17.699 1.00 0.00 C ATOM 456 O TRP 71 52.625 48.616 17.401 1.00 0.00 O ATOM 457 CB TRP 71 55.374 47.087 16.969 1.00 0.00 C ATOM 458 CG TRP 71 56.006 46.409 18.120 1.00 0.00 C ATOM 459 CD2 TRP 71 57.249 46.683 18.833 1.00 0.00 C ATOM 460 CD1 TRP 71 55.537 45.247 18.612 1.00 0.00 C ATOM 461 CE2 TRP 71 57.370 45.674 19.749 1.00 0.00 C ATOM 462 NE1 TRP 71 56.150 45.016 19.780 1.00 0.00 N ATOM 463 CE3 TRP 71 58.042 47.790 19.013 1.00 0.00 C ATOM 464 CZ3 TRP 71 58.967 47.803 20.038 1.00 0.00 C ATOM 465 CH2 TRP 71 59.300 46.636 20.658 1.00 0.00 H ATOM 466 CZ2 TRP 71 58.522 45.526 20.477 1.00 0.00 C ATOM 467 N TYR 72 52.367 46.875 18.825 1.00 0.00 N ATOM 468 CA TYR 72 51.487 47.572 19.795 1.00 0.00 C ATOM 469 C TYR 72 51.499 46.843 21.188 1.00 0.00 C ATOM 470 O TYR 72 51.593 45.633 21.159 1.00 0.00 O ATOM 471 CB TYR 72 50.010 47.658 19.318 1.00 0.00 C ATOM 472 CG TYR 72 49.794 48.586 18.131 1.00 0.00 C ATOM 473 CD1 TYR 72 49.721 48.049 16.886 1.00 0.00 C ATOM 474 CD2 TYR 72 49.951 49.948 18.143 1.00 0.00 C ATOM 475 CE1 TYR 72 50.166 48.796 15.811 1.00 0.00 C ATOM 476 CE2 TYR 72 49.486 50.607 17.016 1.00 0.00 C ATOM 477 CZ TYR 72 49.919 50.157 15.778 1.00 0.00 C ATOM 478 OH TYR 72 49.440 50.756 14.585 1.00 0.00 H ATOM 479 N GLU 73 51.348 47.473 22.420 1.00 0.00 N ATOM 480 CA GLU 73 51.781 46.902 23.758 1.00 0.00 C ATOM 481 C GLU 73 50.425 46.720 24.250 1.00 0.00 C ATOM 482 O GLU 73 49.486 47.304 23.713 1.00 0.00 O ATOM 483 CB GLU 73 52.209 47.708 25.122 1.00 0.00 C ATOM 484 CG GLU 73 52.845 47.008 26.407 1.00 0.00 C ATOM 485 CD GLU 73 53.985 47.779 27.158 1.00 0.00 C ATOM 486 OE1 GLU 73 54.410 48.896 26.750 1.00 0.00 O ATOM 487 OE2 GLU 73 54.483 47.227 28.171 1.00 0.00 O ATOM 488 N ILE 74 50.293 45.943 25.313 1.00 0.00 N ATOM 489 CA ILE 74 49.098 45.296 25.557 1.00 0.00 C ATOM 490 C ILE 74 49.137 45.026 27.012 1.00 0.00 C ATOM 491 O ILE 74 50.231 45.022 27.576 1.00 0.00 O ATOM 492 CB ILE 74 49.038 44.152 24.680 1.00 0.00 C ATOM 493 CG1 ILE 74 47.621 43.734 24.387 1.00 0.00 C ATOM 494 CG2 ILE 74 50.175 43.213 24.963 1.00 0.00 C ATOM 495 CD1 ILE 74 47.089 44.719 23.333 1.00 0.00 C ATOM 496 N GLN 75 47.964 44.813 27.638 1.00 0.00 N ATOM 497 CA GLN 75 47.924 44.186 28.925 1.00 0.00 C ATOM 498 C GLN 75 46.499 43.863 29.155 1.00 0.00 C ATOM 499 O GLN 75 45.641 44.616 28.696 1.00 0.00 O ATOM 500 CB GLN 75 48.631 45.001 30.027 1.00 0.00 C ATOM 501 CG GLN 75 48.120 45.010 31.451 1.00 0.00 C ATOM 502 CD GLN 75 49.157 45.831 32.235 1.00 0.00 C ATOM 503 OE1 GLN 75 49.491 46.932 31.798 1.00 0.00 O ATOM 504 NE2 GLN 75 49.653 45.337 33.402 1.00 0.00 N ATOM 505 N THR 76 46.254 42.689 29.785 1.00 0.00 N ATOM 506 CA THR 76 45.004 41.989 29.761 1.00 0.00 C ATOM 507 C THR 76 44.470 42.177 31.181 1.00 0.00 C ATOM 508 O THR 76 45.043 43.047 31.845 1.00 0.00 O ATOM 509 CB THR 76 45.229 40.562 29.307 1.00 0.00 C ATOM 510 OG1 THR 76 46.173 39.945 30.149 1.00 0.00 O ATOM 511 CG2 THR 76 45.850 40.542 27.909 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 306 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.29 59.2 76 12.6 604 ARMSMC SECONDARY STRUCTURE . . 40.18 60.9 46 16.0 288 ARMSMC SURFACE . . . . . . . . 69.57 51.7 29 10.2 283 ARMSMC BURIED . . . . . . . . 48.17 63.8 47 14.6 321 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.65 52.9 34 14.2 239 ARMSSC1 RELIABLE SIDE CHAINS . 76.07 51.6 31 14.3 217 ARMSSC1 SECONDARY STRUCTURE . . 76.86 50.0 22 18.2 121 ARMSSC1 SURFACE . . . . . . . . 56.17 58.3 12 10.7 112 ARMSSC1 BURIED . . . . . . . . 84.41 50.0 22 17.3 127 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 52.84 70.8 24 14.5 166 ARMSSC2 RELIABLE SIDE CHAINS . 49.78 77.8 18 13.0 138 ARMSSC2 SECONDARY STRUCTURE . . 43.07 75.0 16 21.1 76 ARMSSC2 SURFACE . . . . . . . . 40.30 81.8 11 12.0 92 ARMSSC2 BURIED . . . . . . . . 61.49 61.5 13 17.6 74 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.53 45.5 11 20.8 53 ARMSSC3 RELIABLE SIDE CHAINS . 71.77 50.0 8 18.2 44 ARMSSC3 SECONDARY STRUCTURE . . 65.86 42.9 7 26.9 26 ARMSSC3 SURFACE . . . . . . . . 27.72 83.3 6 15.0 40 ARMSSC3 BURIED . . . . . . . . 92.34 0.0 5 38.5 13 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.20 66.7 3 15.0 20 ARMSSC4 RELIABLE SIDE CHAINS . 59.20 66.7 3 15.0 20 ARMSSC4 SECONDARY STRUCTURE . . 72.39 50.0 2 20.0 10 ARMSSC4 SURFACE . . . . . . . . 59.20 66.7 3 16.7 18 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.95 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.95 39 12.8 304 CRMSCA CRN = ALL/NP . . . . . 0.0499 CRMSCA SECONDARY STRUCTURE . . 1.23 23 16.0 144 CRMSCA SURFACE . . . . . . . . 2.50 15 10.5 143 CRMSCA BURIED . . . . . . . . 1.50 24 14.9 161 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.12 191 12.8 1496 CRMSMC SECONDARY STRUCTURE . . 1.44 115 16.2 710 CRMSMC SURFACE . . . . . . . . 2.71 72 10.2 703 CRMSMC BURIED . . . . . . . . 1.66 119 15.0 793 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.72 150 12.6 1193 CRMSSC RELIABLE SIDE CHAINS . 4.92 126 12.3 1027 CRMSSC SECONDARY STRUCTURE . . 3.97 102 16.9 602 CRMSSC SURFACE . . . . . . . . 5.38 58 9.8 590 CRMSSC BURIED . . . . . . . . 4.25 92 15.3 603 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.58 306 12.7 2409 CRMSALL SECONDARY STRUCTURE . . 3.02 194 16.5 1178 CRMSALL SURFACE . . . . . . . . 4.16 118 10.2 1162 CRMSALL BURIED . . . . . . . . 3.16 188 15.1 1247 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.578 1.000 0.500 39 12.8 304 ERRCA SECONDARY STRUCTURE . . 1.048 1.000 0.500 23 16.0 144 ERRCA SURFACE . . . . . . . . 2.066 1.000 0.500 15 10.5 143 ERRCA BURIED . . . . . . . . 1.273 1.000 0.500 24 14.9 161 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.671 1.000 0.500 191 12.8 1496 ERRMC SECONDARY STRUCTURE . . 1.153 1.000 0.500 115 16.2 710 ERRMC SURFACE . . . . . . . . 2.205 1.000 0.500 72 10.2 703 ERRMC BURIED . . . . . . . . 1.347 1.000 0.500 119 15.0 793 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.574 1.000 0.500 150 12.6 1193 ERRSC RELIABLE SIDE CHAINS . 3.754 1.000 0.500 126 12.3 1027 ERRSC SECONDARY STRUCTURE . . 2.890 1.000 0.500 102 16.9 602 ERRSC SURFACE . . . . . . . . 4.208 1.000 0.500 58 9.8 590 ERRSC BURIED . . . . . . . . 3.174 1.000 0.500 92 15.3 603 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.542 1.000 0.500 306 12.7 2409 ERRALL SECONDARY STRUCTURE . . 2.024 1.000 0.500 194 16.5 1178 ERRALL SURFACE . . . . . . . . 3.117 1.000 0.500 118 10.2 1162 ERRALL BURIED . . . . . . . . 2.182 1.000 0.500 188 15.1 1247 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 27 35 39 39 39 304 DISTCA CA (P) 5.26 8.88 11.51 12.83 12.83 304 DISTCA CA (RMS) 0.64 1.02 1.51 1.95 1.95 DISTCA ALL (N) 92 178 222 266 298 306 2409 DISTALL ALL (P) 3.82 7.39 9.22 11.04 12.37 2409 DISTALL ALL (RMS) 0.67 1.13 1.50 2.06 3.08 DISTALL END of the results output