####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 239), selected 31 , name T0564TS471_1-D1 # Molecule2: number of CA atoms 61 ( 989), selected 31 , name T0564-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0564TS471_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 52 - 76 4.79 10.31 LCS_AVERAGE: 38.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 53 - 64 1.69 12.34 LCS_AVERAGE: 15.02 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 55 - 64 0.89 14.21 LCS_AVERAGE: 10.26 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 46 N 46 3 6 16 3 4 4 5 6 6 6 8 8 8 10 12 13 14 15 16 16 17 17 18 LCS_GDT G 47 G 47 3 6 16 3 4 4 6 6 6 7 8 9 11 12 13 15 15 17 19 23 23 23 25 LCS_GDT G 48 G 48 4 6 16 3 4 4 6 6 7 7 9 11 12 13 15 17 21 22 22 25 25 26 26 LCS_GDT L 49 L 49 4 6 16 3 4 4 6 6 7 8 10 12 13 15 18 20 21 23 24 25 25 26 26 LCS_GDT E 50 E 50 5 8 16 3 5 6 8 8 8 9 10 11 12 14 16 18 21 22 22 25 25 26 26 LCS_GDT K 51 K 51 5 8 20 3 5 6 8 8 8 9 11 13 14 17 21 23 23 24 24 25 26 26 26 LCS_GDT T 52 T 52 6 8 25 3 5 6 8 8 8 11 12 13 16 19 21 23 23 24 25 25 26 26 26 LCS_GDT F 53 F 53 6 12 25 3 5 6 9 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT R 54 R 54 7 12 25 3 5 9 10 11 11 12 14 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT L 55 L 55 10 12 25 5 8 9 10 11 11 12 14 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT Q 56 Q 56 10 12 25 7 8 9 10 11 11 12 14 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT A 57 A 57 10 12 25 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT Q 58 Q 58 10 12 25 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT Q 59 Q 59 10 12 25 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT Y 60 Y 60 10 12 25 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT H 61 H 61 10 12 25 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT A 62 A 62 10 12 25 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT L 63 L 63 10 12 25 3 4 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT T 64 T 64 10 12 25 3 3 7 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT V 65 V 65 3 7 25 3 3 4 5 7 7 9 13 15 18 19 20 22 22 23 25 25 26 26 26 LCS_GDT G 66 G 66 4 7 25 3 4 5 6 7 8 9 11 13 13 16 18 21 22 23 25 25 26 26 26 LCS_GDT D 67 D 67 4 7 25 3 4 5 6 7 9 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT Q 68 Q 68 4 7 25 3 4 5 6 8 9 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT G 69 G 69 4 8 25 3 4 5 6 8 9 11 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT T 70 T 70 5 8 25 4 4 5 5 8 9 9 11 13 13 16 18 21 22 24 25 25 26 26 26 LCS_GDT L 71 L 71 5 8 25 4 4 5 6 8 9 11 13 15 18 19 21 23 23 24 25 25 26 26 26 LCS_GDT S 72 S 72 5 8 25 4 4 5 6 8 9 11 14 15 18 19 21 23 23 24 25 25 26 26 26 LCS_GDT Y 73 Y 73 5 8 25 4 4 5 7 8 9 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT K 74 K 74 5 8 25 3 4 5 7 8 9 11 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT G 75 G 75 4 8 25 3 4 5 7 8 9 12 15 17 19 19 21 23 23 24 25 25 26 26 26 LCS_GDT T 76 T 76 3 8 25 3 3 5 5 8 9 12 13 17 19 19 21 23 23 24 25 25 26 26 26 LCS_AVERAGE LCS_A: 21.21 ( 10.26 15.02 38.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 9 10 11 11 12 15 17 19 19 21 23 23 24 25 25 26 26 26 GDT PERCENT_AT 11.48 13.11 14.75 16.39 18.03 18.03 19.67 24.59 27.87 31.15 31.15 34.43 37.70 37.70 39.34 40.98 40.98 42.62 42.62 42.62 GDT RMS_LOCAL 0.34 0.44 0.69 0.89 1.24 1.24 1.69 3.08 3.28 3.51 3.51 3.86 4.36 4.36 4.56 4.79 4.79 5.04 5.04 5.04 GDT RMS_ALL_AT 14.77 14.34 13.87 14.21 13.37 13.37 12.34 10.18 10.35 10.34 10.34 10.23 9.68 9.68 9.63 10.31 10.31 10.00 10.00 10.00 # Checking swapping # possible swapping detected: E 50 E 50 # possible swapping detected: D 67 D 67 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 46 N 46 28.055 0 0.510 1.198 29.246 0.000 0.000 LGA G 47 G 47 26.446 0 0.129 0.129 27.020 0.000 0.000 LGA G 48 G 48 22.485 0 0.666 0.666 23.958 0.000 0.000 LGA L 49 L 49 16.553 0 0.046 0.085 18.477 0.000 0.000 LGA E 50 E 50 15.925 0 0.582 1.255 18.979 0.000 0.000 LGA K 51 K 51 9.684 0 0.215 1.122 11.846 0.595 8.254 LGA T 52 T 52 8.830 0 0.206 0.210 12.600 6.905 3.946 LGA F 53 F 53 4.239 0 0.058 1.132 5.511 29.048 36.450 LGA R 54 R 54 5.904 0 0.031 0.704 16.032 22.738 9.177 LGA L 55 L 55 4.439 0 0.221 1.052 5.322 34.286 35.119 LGA Q 56 Q 56 5.118 0 0.036 1.226 6.791 34.524 29.735 LGA A 57 A 57 3.809 0 0.033 0.039 4.404 46.905 44.952 LGA Q 58 Q 58 3.241 0 0.076 1.170 8.226 51.905 37.725 LGA Q 59 Q 59 3.388 0 0.035 1.433 9.712 53.571 31.746 LGA Y 60 Y 60 1.328 0 0.075 1.255 7.407 81.548 57.381 LGA H 61 H 61 0.471 0 0.207 0.203 1.786 86.190 87.857 LGA A 62 A 62 2.094 0 0.111 0.109 3.298 65.238 63.619 LGA L 63 L 63 2.198 0 0.591 1.466 5.048 64.881 52.143 LGA T 64 T 64 3.695 0 0.561 0.935 6.365 36.548 30.136 LGA V 65 V 65 7.604 0 0.125 0.202 11.769 9.643 5.646 LGA G 66 G 66 8.790 0 0.609 0.609 8.790 8.571 8.571 LGA D 67 D 67 4.258 0 0.330 0.856 5.945 36.310 38.393 LGA Q 68 Q 68 3.534 0 0.243 1.159 4.291 43.452 42.698 LGA G 69 G 69 3.281 0 0.582 0.582 4.512 43.929 43.929 LGA T 70 T 70 7.688 0 0.601 1.378 12.181 13.690 7.823 LGA L 71 L 71 5.825 0 0.063 0.982 6.519 21.786 28.333 LGA S 72 S 72 5.035 0 0.202 0.226 6.178 28.929 25.714 LGA Y 73 Y 73 2.772 0 0.083 1.315 5.383 57.262 52.659 LGA K 74 K 74 2.711 0 0.322 1.114 4.405 62.976 52.275 LGA G 75 G 75 2.597 0 0.266 0.266 4.086 52.262 52.262 LGA T 76 T 76 6.641 0 0.599 0.633 8.547 16.905 12.993 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 238 238 100.00 61 SUMMARY(RMSD_GDC): 8.225 8.078 8.300 16.567 14.747 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 61 4.0 15 3.08 23.770 21.730 0.471 LGA_LOCAL RMSD: 3.082 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.179 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.225 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.035153 * X + -0.999334 * Y + -0.009811 * Z + 2.878589 Y_new = -0.967763 * X + 0.031589 * Y + 0.249876 * Z + -17.195435 Z_new = -0.249399 * X + 0.018279 * Y + -0.968228 * Z + 8.453013 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.607104 0.252060 3.122716 [DEG: -92.0803 14.4420 178.9185 ] ZXZ: -3.102349 2.888842 -1.497636 [DEG: -177.7515 165.5185 -85.8083 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0564TS471_1-D1 REMARK 2: T0564-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0564TS471_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 61 4.0 15 3.08 21.730 8.23 REMARK ---------------------------------------------------------- MOLECULE T0564TS471_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0564 REMARK MODEL 1 REMARK PARENT 2qzt_A ATOM 1 N ASN 46 -12.909 -3.913 -9.429 1.00 0.00 N ATOM 2 CA ASN 46 -13.515 -5.213 -9.063 1.00 0.00 C ATOM 3 CB ASN 46 -14.820 -5.438 -9.844 1.00 0.00 C ATOM 4 CG ASN 46 -15.563 -6.602 -9.199 1.00 0.00 C ATOM 5 OD1 ASN 46 -15.418 -6.870 -8.007 1.00 0.00 O ATOM 6 ND2 ASN 46 -16.384 -7.320 -10.012 1.00 0.00 N ATOM 7 C ASN 46 -12.573 -6.316 -9.401 1.00 0.00 C ATOM 8 O ASN 46 -11.742 -6.713 -8.586 1.00 0.00 O ATOM 9 N GLY 47 -12.678 -6.837 -10.636 1.00 0.00 N ATOM 10 CA GLY 47 -11.815 -7.904 -11.031 1.00 0.00 C ATOM 11 C GLY 47 -11.477 -7.703 -12.469 1.00 0.00 C ATOM 12 O GLY 47 -12.032 -6.834 -13.138 1.00 0.00 O ATOM 13 N GLY 48 -10.542 -8.526 -12.979 1.00 0.00 N ATOM 14 CA GLY 48 -10.158 -8.428 -14.352 1.00 0.00 C ATOM 15 C GLY 48 -8.914 -7.610 -14.451 1.00 0.00 C ATOM 16 O GLY 48 -8.315 -7.521 -15.521 1.00 0.00 O ATOM 17 N LEU 49 -8.484 -6.978 -13.343 1.00 0.00 N ATOM 18 CA LEU 49 -7.274 -6.213 -13.434 1.00 0.00 C ATOM 19 CB LEU 49 -7.039 -5.263 -12.245 1.00 0.00 C ATOM 20 CG LEU 49 -8.082 -4.132 -12.138 1.00 0.00 C ATOM 21 CD1 LEU 49 -7.772 -3.189 -10.964 1.00 0.00 C ATOM 22 CD2 LEU 49 -8.235 -3.383 -13.472 1.00 0.00 C ATOM 23 C LEU 49 -6.141 -7.185 -13.482 1.00 0.00 C ATOM 24 O LEU 49 -6.146 -8.194 -12.781 1.00 0.00 O ATOM 25 N GLU 50 -5.145 -6.920 -14.349 1.00 0.00 N ATOM 26 CA GLU 50 -4.031 -7.818 -14.439 1.00 0.00 C ATOM 27 CB GLU 50 -3.055 -7.456 -15.571 1.00 0.00 C ATOM 28 CG GLU 50 -2.410 -6.080 -15.395 1.00 0.00 C ATOM 29 CD GLU 50 -3.468 -5.024 -15.671 1.00 0.00 C ATOM 30 OE1 GLU 50 -4.455 -5.345 -16.386 1.00 0.00 O ATOM 31 OE2 GLU 50 -3.300 -3.877 -15.175 1.00 0.00 O ATOM 32 C GLU 50 -3.273 -7.751 -13.154 1.00 0.00 C ATOM 33 O GLU 50 -2.921 -8.779 -12.576 1.00 0.00 O ATOM 34 N LYS 51 -3.017 -6.522 -12.666 1.00 0.00 N ATOM 35 CA LYS 51 -2.274 -6.359 -11.451 1.00 0.00 C ATOM 36 CB LYS 51 -0.900 -5.697 -11.663 1.00 0.00 C ATOM 37 CG LYS 51 0.045 -6.536 -12.525 1.00 0.00 C ATOM 38 CD LYS 51 1.273 -5.772 -13.028 1.00 0.00 C ATOM 39 CE LYS 51 2.436 -5.760 -12.035 1.00 0.00 C ATOM 40 NZ LYS 51 3.587 -5.033 -12.613 1.00 0.00 N ATOM 41 C LYS 51 -3.078 -5.455 -10.579 1.00 0.00 C ATOM 42 O LYS 51 -3.766 -4.560 -11.066 1.00 0.00 O ATOM 43 N THR 52 -3.027 -5.678 -9.253 1.00 0.00 N ATOM 44 CA THR 52 -3.807 -4.842 -8.393 1.00 0.00 C ATOM 45 CB THR 52 -4.913 -5.584 -7.697 1.00 0.00 C ATOM 46 OG1 THR 52 -5.776 -6.187 -8.650 1.00 0.00 O ATOM 47 CG2 THR 52 -5.705 -4.592 -6.831 1.00 0.00 C ATOM 48 C THR 52 -2.909 -4.296 -7.332 1.00 0.00 C ATOM 49 O THR 52 -1.969 -4.957 -6.895 1.00 0.00 O ATOM 50 N PHE 53 -3.177 -3.044 -6.908 1.00 0.00 N ATOM 51 CA PHE 53 -2.432 -2.447 -5.840 1.00 0.00 C ATOM 52 CB PHE 53 -1.905 -1.039 -6.169 1.00 0.00 C ATOM 53 CG PHE 53 -0.893 -1.182 -7.255 1.00 0.00 C ATOM 54 CD1 PHE 53 -1.283 -1.273 -8.570 1.00 0.00 C ATOM 55 CD2 PHE 53 0.449 -1.220 -6.956 1.00 0.00 C ATOM 56 CE1 PHE 53 -0.350 -1.405 -9.572 1.00 0.00 C ATOM 57 CE2 PHE 53 1.387 -1.352 -7.953 1.00 0.00 C ATOM 58 CZ PHE 53 0.988 -1.443 -9.264 1.00 0.00 C ATOM 59 C PHE 53 -3.405 -2.312 -4.720 1.00 0.00 C ATOM 60 O PHE 53 -4.525 -1.842 -4.919 1.00 0.00 O ATOM 61 N ARG 54 -3.014 -2.737 -3.505 1.00 0.00 N ATOM 62 CA ARG 54 -3.967 -2.679 -2.442 1.00 0.00 C ATOM 63 CB ARG 54 -4.217 -4.030 -1.751 1.00 0.00 C ATOM 64 CG ARG 54 -4.881 -5.092 -2.628 1.00 0.00 C ATOM 65 CD ARG 54 -5.101 -6.408 -1.880 1.00 0.00 C ATOM 66 NE ARG 54 -5.754 -7.362 -2.817 1.00 0.00 N ATOM 67 CZ ARG 54 -6.169 -8.581 -2.360 1.00 0.00 C ATOM 68 NH1 ARG 54 -5.975 -8.919 -1.052 1.00 0.00 N ATOM 69 NH2 ARG 54 -6.779 -9.458 -3.210 1.00 0.00 N ATOM 70 C ARG 54 -3.463 -1.777 -1.368 1.00 0.00 C ATOM 71 O ARG 54 -2.307 -1.857 -0.954 1.00 0.00 O ATOM 72 N LEU 55 -4.346 -0.864 -0.925 1.00 0.00 N ATOM 73 CA LEU 55 -4.105 -0.027 0.208 1.00 0.00 C ATOM 74 CB LEU 55 -3.828 1.439 -0.156 1.00 0.00 C ATOM 75 CG LEU 55 -2.553 1.634 -0.999 1.00 0.00 C ATOM 76 CD1 LEU 55 -1.294 1.237 -0.214 1.00 0.00 C ATOM 77 CD2 LEU 55 -2.667 0.915 -2.353 1.00 0.00 C ATOM 78 C LEU 55 -5.408 -0.064 0.936 1.00 0.00 C ATOM 79 O LEU 55 -6.378 0.554 0.500 1.00 0.00 O ATOM 80 N GLN 56 -5.478 -0.795 2.066 1.00 0.00 N ATOM 81 CA GLN 56 -6.747 -0.919 2.722 1.00 0.00 C ATOM 82 CB GLN 56 -6.930 -2.218 3.523 1.00 0.00 C ATOM 83 CG GLN 56 -8.312 -2.319 4.168 1.00 0.00 C ATOM 84 CD GLN 56 -9.343 -2.375 3.049 1.00 0.00 C ATOM 85 OE1 GLN 56 -9.191 -3.125 2.086 1.00 0.00 O ATOM 86 NE2 GLN 56 -10.420 -1.553 3.173 1.00 0.00 N ATOM 87 C GLN 56 -6.946 0.229 3.654 1.00 0.00 C ATOM 88 O GLN 56 -5.990 0.861 4.095 1.00 0.00 O ATOM 89 N ALA 57 -8.226 0.531 3.952 1.00 0.00 N ATOM 90 CA ALA 57 -8.586 1.617 4.817 1.00 0.00 C ATOM 91 CB ALA 57 -10.108 1.796 4.946 1.00 0.00 C ATOM 92 C ALA 57 -8.050 1.349 6.187 1.00 0.00 C ATOM 93 O ALA 57 -7.499 2.240 6.831 1.00 0.00 O ATOM 94 N GLN 58 -8.181 0.096 6.663 1.00 0.00 N ATOM 95 CA GLN 58 -7.700 -0.220 7.975 1.00 0.00 C ATOM 96 CB GLN 58 -7.894 -1.693 8.372 1.00 0.00 C ATOM 97 CG GLN 58 -9.348 -2.166 8.344 1.00 0.00 C ATOM 98 CD GLN 58 -9.598 -2.801 6.983 1.00 0.00 C ATOM 99 OE1 GLN 58 -10.548 -2.465 6.277 1.00 0.00 O ATOM 100 NE2 GLN 58 -8.716 -3.766 6.609 1.00 0.00 N ATOM 101 C GLN 58 -6.234 0.010 7.920 1.00 0.00 C ATOM 102 O GLN 58 -5.620 0.495 8.869 1.00 0.00 O ATOM 103 N GLN 59 -5.645 -0.336 6.765 1.00 0.00 N ATOM 104 CA GLN 59 -4.246 -0.181 6.546 1.00 0.00 C ATOM 105 CB GLN 59 -3.821 -0.697 5.158 1.00 0.00 C ATOM 106 CG GLN 59 -2.396 -0.325 4.751 1.00 0.00 C ATOM 107 CD GLN 59 -2.470 1.049 4.095 1.00 0.00 C ATOM 108 OE1 GLN 59 -3.051 1.202 3.022 1.00 0.00 O ATOM 109 NE2 GLN 59 -1.879 2.077 4.759 1.00 0.00 N ATOM 110 C GLN 59 -3.910 1.273 6.651 1.00 0.00 C ATOM 111 O GLN 59 -2.884 1.625 7.226 1.00 0.00 O ATOM 112 N TYR 60 -4.767 2.170 6.123 1.00 0.00 N ATOM 113 CA TYR 60 -4.435 3.566 6.205 1.00 0.00 C ATOM 114 CB TYR 60 -5.483 4.511 5.586 1.00 0.00 C ATOM 115 CG TYR 60 -5.353 4.457 4.102 1.00 0.00 C ATOM 116 CD1 TYR 60 -6.012 3.504 3.361 1.00 0.00 C ATOM 117 CD2 TYR 60 -4.563 5.379 3.454 1.00 0.00 C ATOM 118 CE1 TYR 60 -5.880 3.471 1.992 1.00 0.00 C ATOM 119 CE2 TYR 60 -4.428 5.351 2.086 1.00 0.00 C ATOM 120 CZ TYR 60 -5.087 4.395 1.353 1.00 0.00 C ATOM 121 OH TYR 60 -4.952 4.365 -0.051 1.00 0.00 O ATOM 122 C TYR 60 -4.302 3.940 7.647 1.00 0.00 C ATOM 123 O TYR 60 -3.368 4.645 8.030 1.00 0.00 O ATOM 124 N HIS 61 -5.229 3.458 8.492 1.00 0.00 N ATOM 125 CA HIS 61 -5.199 3.789 9.888 1.00 0.00 C ATOM 126 ND1 HIS 61 -5.626 2.601 13.053 1.00 0.00 N ATOM 127 CG HIS 61 -6.323 3.356 12.137 1.00 0.00 C ATOM 128 CB HIS 61 -6.325 3.081 10.662 1.00 0.00 C ATOM 129 NE2 HIS 61 -6.675 4.188 14.204 1.00 0.00 N ATOM 130 CD2 HIS 61 -6.958 4.320 12.856 1.00 0.00 C ATOM 131 CE1 HIS 61 -5.871 3.142 14.274 1.00 0.00 C ATOM 132 C HIS 61 -3.895 3.331 10.464 1.00 0.00 C ATOM 133 O HIS 61 -3.216 4.073 11.172 1.00 0.00 O ATOM 134 N ALA 62 -3.503 2.086 10.152 1.00 0.00 N ATOM 135 CA ALA 62 -2.285 1.528 10.662 1.00 0.00 C ATOM 136 CB ALA 62 -2.066 0.070 10.227 1.00 0.00 C ATOM 137 C ALA 62 -1.135 2.327 10.135 1.00 0.00 C ATOM 138 O ALA 62 -0.126 2.509 10.811 1.00 0.00 O ATOM 139 N LEU 63 -1.261 2.815 8.891 1.00 0.00 N ATOM 140 CA LEU 63 -0.214 3.518 8.212 1.00 0.00 C ATOM 141 CB LEU 63 -0.608 3.894 6.768 1.00 0.00 C ATOM 142 CG LEU 63 0.490 4.586 5.930 1.00 0.00 C ATOM 143 CD1 LEU 63 0.761 6.030 6.386 1.00 0.00 C ATOM 144 CD2 LEU 63 1.765 3.728 5.871 1.00 0.00 C ATOM 145 C LEU 63 0.122 4.763 8.957 1.00 0.00 C ATOM 146 O LEU 63 1.297 5.117 9.044 1.00 0.00 O ATOM 147 N THR 64 -0.892 5.458 9.512 1.00 0.00 N ATOM 148 CA THR 64 -0.603 6.690 10.187 1.00 0.00 C ATOM 149 CB THR 64 -1.812 7.326 10.808 1.00 0.00 C ATOM 150 OG1 THR 64 -2.369 6.465 11.791 1.00 0.00 O ATOM 151 CG2 THR 64 -2.843 7.616 9.703 1.00 0.00 C ATOM 152 C THR 64 0.372 6.391 11.276 1.00 0.00 C ATOM 153 O THR 64 1.423 7.025 11.363 1.00 0.00 O ATOM 154 N VAL 65 0.068 5.397 12.129 1.00 0.00 N ATOM 155 CA VAL 65 1.043 5.026 13.110 1.00 0.00 C ATOM 156 CB VAL 65 0.548 5.157 14.522 1.00 0.00 C ATOM 157 CG1 VAL 65 1.625 4.612 15.476 1.00 0.00 C ATOM 158 CG2 VAL 65 0.177 6.628 14.773 1.00 0.00 C ATOM 159 C VAL 65 1.311 3.579 12.877 1.00 0.00 C ATOM 160 O VAL 65 0.533 2.730 13.309 1.00 0.00 O ATOM 161 N GLY 66 2.426 3.236 12.205 1.00 0.00 N ATOM 162 CA GLY 66 2.597 1.837 11.959 1.00 0.00 C ATOM 163 C GLY 66 3.787 1.607 11.087 1.00 0.00 C ATOM 164 O GLY 66 4.689 2.439 10.991 1.00 0.00 O ATOM 165 N ASP 67 3.796 0.432 10.427 1.00 0.00 N ATOM 166 CA ASP 67 4.905 -0.000 9.627 1.00 0.00 C ATOM 167 CB ASP 67 5.023 -1.530 9.520 1.00 0.00 C ATOM 168 CG ASP 67 3.793 -2.051 8.796 1.00 0.00 C ATOM 169 OD1 ASP 67 2.671 -1.587 9.127 1.00 0.00 O ATOM 170 OD2 ASP 67 3.960 -2.929 7.907 1.00 0.00 O ATOM 171 C ASP 67 4.804 0.542 8.238 1.00 0.00 C ATOM 172 O ASP 67 3.942 1.361 7.925 1.00 0.00 O ATOM 173 N GLN 68 5.740 0.090 7.374 1.00 0.00 N ATOM 174 CA GLN 68 5.837 0.501 6.002 1.00 0.00 C ATOM 175 CB GLN 68 7.249 0.999 5.633 1.00 0.00 C ATOM 176 CG GLN 68 7.375 1.609 4.236 1.00 0.00 C ATOM 177 CD GLN 68 8.811 2.090 4.067 1.00 0.00 C ATOM 178 OE1 GLN 68 9.233 3.058 4.698 1.00 0.00 O ATOM 179 NE2 GLN 68 9.583 1.396 3.190 1.00 0.00 N ATOM 180 C GLN 68 5.506 -0.698 5.164 1.00 0.00 C ATOM 181 O GLN 68 5.110 -1.738 5.688 1.00 0.00 O ATOM 182 N GLY 69 5.645 -0.583 3.827 1.00 0.00 N ATOM 183 CA GLY 69 5.300 -1.691 2.982 1.00 0.00 C ATOM 184 C GLY 69 3.810 -1.693 2.883 1.00 0.00 C ATOM 185 O GLY 69 3.172 -2.740 2.775 1.00 0.00 O ATOM 186 N THR 70 3.230 -0.481 2.921 1.00 0.00 N ATOM 187 CA THR 70 1.814 -0.266 2.903 1.00 0.00 C ATOM 188 CB THR 70 1.482 1.193 3.022 1.00 0.00 C ATOM 189 OG1 THR 70 0.076 1.383 3.023 1.00 0.00 O ATOM 190 CG2 THR 70 2.128 1.944 1.846 1.00 0.00 C ATOM 191 C THR 70 1.209 -0.776 1.634 1.00 0.00 C ATOM 192 O THR 70 0.153 -1.408 1.662 1.00 0.00 O ATOM 193 N LEU 71 1.858 -0.517 0.483 1.00 0.00 N ATOM 194 CA LEU 71 1.289 -0.903 -0.777 1.00 0.00 C ATOM 195 CB LEU 71 1.984 -0.189 -1.964 1.00 0.00 C ATOM 196 CG LEU 71 1.407 -0.430 -3.378 1.00 0.00 C ATOM 197 CD1 LEU 71 2.112 0.469 -4.406 1.00 0.00 C ATOM 198 CD2 LEU 71 1.462 -1.902 -3.803 1.00 0.00 C ATOM 199 C LEU 71 1.422 -2.389 -0.910 1.00 0.00 C ATOM 200 O LEU 71 2.445 -2.973 -0.554 1.00 0.00 O ATOM 201 N SER 72 0.364 -3.040 -1.432 1.00 0.00 N ATOM 202 CA SER 72 0.382 -4.463 -1.604 1.00 0.00 C ATOM 203 CB SER 72 -0.790 -5.182 -0.912 1.00 0.00 C ATOM 204 OG SER 72 -0.712 -5.001 0.494 1.00 0.00 O ATOM 205 C SER 72 0.249 -4.726 -3.065 1.00 0.00 C ATOM 206 O SER 72 -0.363 -3.946 -3.794 1.00 0.00 O ATOM 207 N TYR 73 0.824 -5.850 -3.537 1.00 0.00 N ATOM 208 CA TYR 73 0.786 -6.131 -4.941 1.00 0.00 C ATOM 209 CB TYR 73 2.189 -6.253 -5.557 1.00 0.00 C ATOM 210 CG TYR 73 2.867 -4.945 -5.336 1.00 0.00 C ATOM 211 CD1 TYR 73 2.656 -3.892 -6.195 1.00 0.00 C ATOM 212 CD2 TYR 73 3.709 -4.771 -4.263 1.00 0.00 C ATOM 213 CE1 TYR 73 3.279 -2.684 -5.990 1.00 0.00 C ATOM 214 CE2 TYR 73 4.336 -3.566 -4.051 1.00 0.00 C ATOM 215 CZ TYR 73 4.121 -2.520 -4.916 1.00 0.00 C ATOM 216 OH TYR 73 4.759 -1.279 -4.700 1.00 0.00 O ATOM 217 C TYR 73 0.097 -7.444 -5.138 1.00 0.00 C ATOM 218 O TYR 73 0.304 -8.390 -4.380 1.00 0.00 O ATOM 219 N LYS 74 -0.766 -7.517 -6.168 1.00 0.00 N ATOM 220 CA LYS 74 -1.471 -8.728 -6.465 1.00 0.00 C ATOM 221 CB LYS 74 -2.972 -8.658 -6.147 1.00 0.00 C ATOM 222 CG LYS 74 -3.737 -9.950 -6.439 1.00 0.00 C ATOM 223 CD LYS 74 -3.399 -11.096 -5.481 1.00 0.00 C ATOM 224 CE LYS 74 -4.167 -12.386 -5.774 1.00 0.00 C ATOM 225 NZ LYS 74 -3.773 -13.444 -4.817 1.00 0.00 N ATOM 226 C LYS 74 -1.348 -8.949 -7.935 1.00 0.00 C ATOM 227 O LYS 74 -0.950 -8.054 -8.680 1.00 0.00 O ATOM 228 N GLY 75 -1.673 -10.174 -8.387 1.00 0.00 N ATOM 229 CA GLY 75 -1.604 -10.470 -9.785 1.00 0.00 C ATOM 230 C GLY 75 -0.203 -10.879 -10.079 1.00 0.00 C ATOM 231 O GLY 75 0.640 -10.942 -9.186 1.00 0.00 O ATOM 232 N THR 76 0.081 -11.169 -11.360 1.00 0.00 N ATOM 233 CA THR 76 1.408 -11.567 -11.716 1.00 0.00 C ATOM 234 CB THR 76 1.566 -11.898 -13.173 1.00 0.00 C ATOM 235 OG1 THR 76 1.295 -10.754 -13.969 1.00 0.00 O ATOM 236 CG2 THR 76 0.597 -13.038 -13.528 1.00 0.00 C ATOM 237 C THR 76 2.316 -10.388 -11.403 1.00 0.00 C ATOM 238 O THR 76 2.059 -9.283 -11.951 1.00 0.00 O ATOM 239 OXT THR 76 3.278 -10.576 -10.610 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 238 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 75.01 40.9 22 18.8 117 ARMSMC SECONDARY STRUCTURE . . 67.84 62.5 8 12.1 66 ARMSMC SURFACE . . . . . . . . 80.35 38.9 18 21.2 85 ARMSMC BURIED . . . . . . . . 43.52 50.0 4 12.5 32 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.16 42.9 7 15.2 46 ARMSSC1 RELIABLE SIDE CHAINS . 92.16 42.9 7 17.1 41 ARMSSC1 SECONDARY STRUCTURE . . 89.60 50.0 4 13.8 29 ARMSSC1 SURFACE . . . . . . . . 96.52 40.0 5 15.6 32 ARMSSC1 BURIED . . . . . . . . 80.22 50.0 2 14.3 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.56 66.7 3 11.1 27 ARMSSC2 RELIABLE SIDE CHAINS . 10.49 100.0 1 4.5 22 ARMSSC2 SECONDARY STRUCTURE . . 10.49 100.0 1 5.9 17 ARMSSC2 SURFACE . . . . . . . . 7.56 100.0 2 10.0 20 ARMSSC2 BURIED . . . . . . . . 102.60 0.0 1 14.3 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.23 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.23 31 50.8 61 CRMSCA CRN = ALL/NP . . . . . 0.2653 CRMSCA SECONDARY STRUCTURE . . 6.48 10 30.3 33 CRMSCA SURFACE . . . . . . . . 8.78 24 53.3 45 CRMSCA BURIED . . . . . . . . 5.94 7 43.8 16 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.13 150 50.2 299 CRMSMC SECONDARY STRUCTURE . . 6.74 49 30.1 163 CRMSMC SURFACE . . . . . . . . 8.63 116 52.7 220 CRMSMC BURIED . . . . . . . . 6.09 34 43.0 79 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.79 114 15.3 745 CRMSSC RELIABLE SIDE CHAINS . 8.44 90 12.9 699 CRMSSC SECONDARY STRUCTURE . . 8.16 44 10.3 429 CRMSSC SURFACE . . . . . . . . 9.21 85 15.3 555 CRMSSC BURIED . . . . . . . . 7.41 29 15.3 190 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.43 238 24.1 989 CRMSALL SECONDARY STRUCTURE . . 7.45 84 15.0 561 CRMSALL SURFACE . . . . . . . . 8.89 181 24.6 735 CRMSALL BURIED . . . . . . . . 6.76 57 22.4 254 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.286 1.000 0.500 31 50.8 61 ERRCA SECONDARY STRUCTURE . . 6.370 1.000 0.500 10 30.3 33 ERRCA SURFACE . . . . . . . . 7.775 1.000 0.500 24 53.3 45 ERRCA BURIED . . . . . . . . 5.609 1.000 0.500 7 43.8 16 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.255 1.000 0.500 150 50.2 299 ERRMC SECONDARY STRUCTURE . . 6.608 1.000 0.500 49 30.1 163 ERRMC SURFACE . . . . . . . . 7.675 1.000 0.500 116 52.7 220 ERRMC BURIED . . . . . . . . 5.823 1.000 0.500 34 43.0 79 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.969 1.000 0.500 114 15.3 745 ERRSC RELIABLE SIDE CHAINS . 7.810 1.000 0.500 90 12.9 699 ERRSC SECONDARY STRUCTURE . . 7.943 1.000 0.500 44 10.3 429 ERRSC SURFACE . . . . . . . . 8.250 1.000 0.500 85 15.3 555 ERRSC BURIED . . . . . . . . 7.146 1.000 0.500 29 15.3 190 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.580 1.000 0.500 238 24.1 989 ERRALL SECONDARY STRUCTURE . . 7.237 1.000 0.500 84 15.0 561 ERRALL SURFACE . . . . . . . . 7.934 1.000 0.500 181 24.6 735 ERRALL BURIED . . . . . . . . 6.456 1.000 0.500 57 22.4 254 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 3 8 25 31 61 DISTCA CA (P) 0.00 3.28 4.92 13.11 40.98 61 DISTCA CA (RMS) 0.00 1.54 1.83 3.59 6.19 DISTCA ALL (N) 0 11 24 53 192 238 989 DISTALL ALL (P) 0.00 1.11 2.43 5.36 19.41 989 DISTALL ALL (RMS) 0.00 1.60 2.19 3.45 6.65 DISTALL END of the results output