####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 61 ( 244), selected 51 , name T0564AL396_1-D1 # Molecule2: number of CA atoms 61 ( 989), selected 51 , name T0564-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0564AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 48 - 70 4.88 16.59 LCS_AVERAGE: 27.68 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 49 - 57 1.98 17.38 LCS_AVERAGE: 10.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 7 - 11 0.81 18.01 LONGEST_CONTINUOUS_SEGMENT: 5 62 - 66 0.66 13.85 LONGEST_CONTINUOUS_SEGMENT: 5 69 - 73 0.91 19.00 LCS_AVERAGE: 6.56 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 51 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 4 L 4 4 5 14 3 4 4 5 9 11 13 14 15 17 18 18 20 23 27 27 27 28 30 34 LCS_GDT Q 5 Q 5 4 6 14 3 4 4 6 9 11 13 14 15 17 18 18 20 23 27 27 27 28 30 34 LCS_GDT Q 6 Q 6 4 6 14 3 4 4 6 8 11 12 14 15 17 18 18 19 23 27 27 27 28 30 34 LCS_GDT K 7 K 7 5 6 14 3 4 5 6 9 11 13 14 15 17 18 18 19 23 27 27 27 28 30 34 LCS_GDT Q 8 Q 8 5 6 14 3 4 5 6 6 6 11 14 15 17 18 18 19 23 27 27 27 28 30 34 LCS_GDT V 9 V 9 5 6 14 3 4 5 6 9 11 13 14 15 17 18 18 20 23 27 27 27 28 30 34 LCS_GDT V 10 V 10 5 6 14 3 4 5 6 8 11 13 14 15 17 18 18 20 23 27 27 27 28 30 34 LCS_GDT V 11 V 11 5 6 14 3 3 5 6 9 11 13 14 15 17 18 18 19 23 27 27 27 28 30 34 LCS_GDT S 12 S 12 3 6 14 3 3 4 6 9 11 13 14 15 17 18 20 21 23 27 27 27 28 30 34 LCS_GDT N 13 N 13 3 6 14 3 5 7 9 11 13 13 14 15 17 18 21 21 23 27 27 27 28 30 34 LCS_GDT K 14 K 14 3 6 14 3 3 3 6 7 9 13 14 15 17 19 21 21 23 27 27 27 28 30 34 LCS_GDT R 15 R 15 3 4 14 3 3 3 5 6 7 12 14 15 17 18 19 21 23 27 27 27 28 30 34 LCS_GDT E 16 E 16 3 4 14 3 3 3 5 6 7 8 10 12 12 15 18 21 23 27 27 27 28 30 34 LCS_GDT K 17 K 17 3 4 14 0 3 3 4 5 5 7 8 11 13 16 18 21 21 23 24 25 28 30 34 LCS_GDT L 45 L 45 3 4 19 0 3 3 4 4 9 10 12 13 14 17 19 19 20 23 23 26 28 30 34 LCS_GDT N 46 N 46 3 5 19 3 3 3 4 4 5 6 7 7 7 8 10 16 19 19 20 23 26 28 31 LCS_GDT G 47 G 47 3 5 19 3 3 4 4 5 5 6 7 8 10 14 16 17 19 20 23 25 27 29 30 LCS_GDT G 48 G 48 4 5 21 4 4 5 5 5 9 11 13 15 16 18 21 21 22 23 24 25 27 29 30 LCS_GDT L 49 L 49 4 9 21 4 5 7 9 11 13 13 14 15 16 19 21 21 22 23 24 25 27 29 30 LCS_GDT E 50 E 50 4 9 21 4 4 5 7 10 13 13 14 15 16 19 21 21 22 23 24 25 27 29 30 LCS_GDT K 51 K 51 4 9 21 4 5 7 9 11 13 13 14 15 16 19 21 21 22 23 24 25 27 29 30 LCS_GDT T 52 T 52 4 9 21 3 5 7 9 11 13 13 14 15 16 19 21 21 22 23 24 25 27 29 30 LCS_GDT F 53 F 53 4 9 21 3 5 5 6 11 13 13 14 15 17 19 21 21 22 23 24 25 27 29 30 LCS_GDT R 54 R 54 4 9 21 4 5 6 9 11 13 13 14 15 17 19 21 21 22 23 24 25 27 29 30 LCS_GDT L 55 L 55 4 9 21 4 5 6 9 11 13 13 14 15 16 19 21 21 22 23 24 26 28 30 34 LCS_GDT Q 56 Q 56 4 9 21 4 4 4 9 11 13 13 14 15 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT A 57 A 57 4 9 21 4 4 4 5 7 13 13 14 15 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT Q 58 Q 58 3 8 21 3 5 7 9 11 13 13 14 15 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT Q 59 Q 59 3 5 21 3 3 4 5 6 8 12 13 15 16 17 19 21 23 27 27 27 28 30 34 LCS_GDT Y 60 Y 60 3 5 21 3 3 7 9 11 13 13 14 15 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT H 61 H 61 3 6 21 3 3 3 6 7 7 8 9 12 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT A 62 A 62 5 6 21 4 5 5 6 7 7 8 10 12 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT L 63 L 63 5 6 21 4 5 5 6 7 7 8 10 12 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT T 64 T 64 5 6 21 4 5 5 6 7 7 8 10 12 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT V 65 V 65 5 6 21 3 5 5 6 7 7 8 10 12 16 19 21 21 23 27 27 27 28 30 34 LCS_GDT G 66 G 66 5 6 21 4 5 5 6 7 7 8 10 12 16 19 21 21 22 23 24 25 28 30 34 LCS_GDT G 69 G 69 5 7 21 4 4 5 5 6 10 10 12 14 16 19 21 21 22 23 24 25 27 29 30 LCS_GDT T 70 T 70 5 7 21 4 4 7 9 11 13 13 14 15 16 18 20 21 22 23 24 25 27 29 30 LCS_GDT L 71 L 71 5 7 16 4 4 5 5 6 8 12 14 15 16 17 19 21 22 23 23 24 26 29 30 LCS_GDT S 72 S 72 5 7 15 4 4 5 5 6 8 9 10 11 15 15 16 18 20 20 23 24 26 26 26 LCS_GDT Y 73 Y 73 5 7 13 3 4 5 5 6 8 9 9 11 12 13 14 16 19 19 20 22 22 25 26 LCS_GDT K 74 K 74 4 7 13 3 4 5 5 7 8 9 9 11 12 13 14 15 15 18 22 23 26 26 27 LCS_GDT G 75 G 75 4 7 13 3 4 5 5 7 8 9 9 11 13 15 16 17 18 19 22 23 26 26 30 LCS_GDT T 76 T 76 4 7 13 3 4 5 5 7 8 9 10 12 14 18 18 19 19 20 22 23 27 30 34 LCS_GDT R 77 R 77 4 7 13 3 4 4 5 7 8 8 9 11 14 14 16 20 23 27 27 27 28 30 34 LCS_GDT F 78 F 78 4 7 13 3 4 5 5 7 8 8 9 12 14 14 16 20 23 27 27 27 28 30 34 LCS_GDT V 79 V 79 4 7 13 3 4 4 5 7 8 8 9 10 14 15 16 17 20 20 22 25 28 30 34 LCS_GDT G 80 G 80 4 7 12 3 4 4 5 7 8 8 9 12 14 15 16 17 20 20 22 23 26 29 34 LCS_GDT F 81 F 81 4 7 11 3 4 4 6 9 11 13 14 15 17 18 18 20 23 27 27 27 28 30 34 LCS_GDT V 82 V 82 3 5 11 3 4 4 6 9 11 13 14 15 17 18 18 19 23 27 27 27 28 30 34 LCS_GDT S 83 S 83 3 3 11 2 3 4 6 9 11 13 14 15 17 18 18 19 19 20 21 26 28 28 31 LCS_AVERAGE LCS_A: 14.95 ( 6.56 10.61 27.68 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 9 11 13 13 14 15 17 19 21 21 23 27 27 27 28 30 34 GDT PERCENT_AT 6.56 8.20 11.48 14.75 18.03 21.31 21.31 22.95 24.59 27.87 31.15 34.43 34.43 37.70 44.26 44.26 44.26 45.90 49.18 55.74 GDT RMS_LOCAL 0.24 0.66 1.05 1.26 1.54 2.03 2.09 2.21 2.41 3.01 4.06 4.31 4.10 5.44 5.91 5.91 5.91 6.08 6.55 7.16 GDT RMS_ALL_AT 22.24 13.85 16.04 16.10 16.13 16.37 16.06 16.29 16.14 14.65 17.04 16.58 16.09 12.67 12.61 12.61 12.61 12.56 12.09 11.87 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 4 L 4 33.754 4 0.011 0.011 36.119 0.000 0.000 LGA Q 5 Q 5 35.045 5 0.408 0.408 35.045 0.000 0.000 LGA Q 6 Q 6 30.969 5 0.111 0.111 32.683 0.000 0.000 LGA K 7 K 7 29.938 5 0.590 0.590 29.938 0.000 0.000 LGA Q 8 Q 8 24.450 5 0.504 0.504 26.485 0.000 0.000 LGA V 9 V 9 21.353 3 0.140 0.140 22.664 0.000 0.000 LGA V 10 V 10 15.399 3 0.114 0.114 17.550 0.000 0.000 LGA V 11 V 11 11.167 3 0.397 0.397 12.499 2.976 1.701 LGA S 12 S 12 4.577 2 0.565 0.565 7.195 40.833 27.222 LGA N 13 N 13 1.070 4 0.645 0.645 2.566 67.024 33.512 LGA K 14 K 14 5.982 5 0.582 0.582 8.088 18.333 8.148 LGA R 15 R 15 11.111 7 0.080 0.080 12.993 0.357 0.130 LGA E 16 E 16 17.235 5 0.491 0.491 18.953 0.000 0.000 LGA K 17 K 17 18.179 5 0.548 0.548 19.237 0.000 0.000 LGA L 45 L 45 9.789 4 0.424 0.424 10.758 0.238 0.119 LGA N 46 N 46 13.936 4 0.640 0.640 14.326 0.000 0.000 LGA G 47 G 47 12.899 0 0.174 0.174 13.065 0.000 0.000 LGA G 48 G 48 8.203 0 0.602 0.602 9.717 13.214 13.214 LGA L 49 L 49 1.316 4 0.177 0.177 4.018 62.500 31.250 LGA E 50 E 50 3.286 5 0.102 0.102 3.286 61.190 27.196 LGA K 51 K 51 0.524 5 0.099 0.099 2.598 77.738 34.550 LGA T 52 T 52 0.442 3 0.292 0.292 3.123 80.476 45.986 LGA F 53 F 53 2.726 7 0.063 0.063 2.726 71.310 25.931 LGA R 54 R 54 2.001 7 0.563 0.563 2.136 73.095 26.580 LGA L 55 L 55 1.600 4 0.043 0.043 2.880 75.476 37.738 LGA Q 56 Q 56 2.082 5 0.140 0.140 2.563 69.048 30.688 LGA A 57 A 57 3.952 1 0.598 0.598 3.952 51.905 41.524 LGA Q 58 Q 58 0.699 5 0.176 0.176 3.526 68.095 30.265 LGA Q 59 Q 59 5.610 5 0.026 0.026 6.041 30.000 13.333 LGA Y 60 Y 60 1.592 8 0.631 0.631 3.821 61.548 20.516 LGA H 61 H 61 6.214 6 0.653 0.653 7.684 19.405 7.762 LGA A 62 A 62 7.818 1 0.614 0.614 10.660 5.833 4.667 LGA L 63 L 63 8.474 4 0.086 0.086 9.348 3.690 1.845 LGA T 64 T 64 12.168 3 0.093 0.093 12.168 0.000 0.000 LGA V 65 V 65 11.578 3 0.198 0.198 13.788 0.000 0.000 LGA G 66 G 66 14.495 0 0.334 0.334 14.495 0.000 0.000 LGA G 69 G 69 8.524 0 0.663 0.663 9.008 11.786 11.786 LGA T 70 T 70 2.178 3 0.048 0.048 4.381 57.976 33.129 LGA L 71 L 71 3.578 4 0.099 0.099 7.478 32.976 16.488 LGA S 72 S 72 9.471 2 0.250 0.250 10.590 4.048 2.698 LGA Y 73 Y 73 14.301 8 0.064 0.064 17.975 0.000 0.000 LGA K 74 K 74 20.518 5 0.285 0.285 21.770 0.000 0.000 LGA G 75 G 75 24.437 0 0.395 0.395 24.437 0.000 0.000 LGA T 76 T 76 21.149 3 0.047 0.047 22.667 0.000 0.000 LGA R 77 R 77 24.020 7 0.605 0.605 24.646 0.000 0.000 LGA F 78 F 78 20.667 7 0.036 0.036 21.274 0.000 0.000 LGA V 79 V 79 20.888 3 0.525 0.525 22.637 0.000 0.000 LGA G 80 G 80 21.529 0 0.177 0.177 21.529 0.000 0.000 LGA F 81 F 81 22.173 7 0.640 0.640 26.122 0.000 0.000 LGA V 82 V 82 27.901 3 0.318 0.318 28.781 0.000 0.000 LGA S 83 S 83 28.049 2 0.125 0.125 32.431 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 51 204 204 100.00 403 204 50.62 61 SUMMARY(RMSD_GDC): 10.804 10.763 10.763 17.395 8.655 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 61 61 4.0 14 2.21 22.541 19.951 0.605 LGA_LOCAL RMSD: 2.215 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.286 Number of assigned atoms: 51 Std_ASGN_ATOMS RMSD: 10.804 Standard rmsd on all 51 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.037394 * X + -0.858412 * Y + -0.511597 * Z + -0.750594 Y_new = -0.379992 * X + 0.461282 * Y + -0.801764 * Z + 2.747640 Z_new = 0.924234 * X + 0.224384 * Y + -0.308940 * Z + 2.696484 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.472704 -1.179024 2.513432 [DEG: -84.3797 -67.5531 144.0090 ] ZXZ: -0.567956 1.884875 1.332626 [DEG: -32.5415 107.9954 76.3539 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0564AL396_1-D1 REMARK 2: T0564-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0564AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 61 61 4.0 14 2.21 19.951 10.80 REMARK ---------------------------------------------------------- MOLECULE T0564AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kq8_A ATOM 13 N LEU 4 -14.870 15.046 0.890 1.00 0.00 N ATOM 14 CA LEU 4 -13.421 15.078 0.790 1.00 0.00 C ATOM 15 C LEU 4 -12.917 16.499 0.999 1.00 0.00 C ATOM 16 O LEU 4 -12.982 17.337 0.098 1.00 0.00 O ATOM 17 N GLN 5 -12.461 16.769 2.207 1.00 0.00 N ATOM 18 CA GLN 5 -11.928 18.074 2.561 1.00 0.00 C ATOM 19 C GLN 5 -10.585 17.881 3.259 1.00 0.00 C ATOM 20 O GLN 5 -10.179 18.668 4.113 1.00 0.00 O ATOM 21 N GLN 6 -9.897 16.812 2.883 1.00 0.00 N ATOM 22 CA GLN 6 -8.609 16.486 3.465 1.00 0.00 C ATOM 23 C GLN 6 -7.563 17.504 3.043 1.00 0.00 C ATOM 24 O GLN 6 -7.656 18.085 1.960 1.00 0.00 O ATOM 25 N LYS 7 -6.581 17.724 3.905 1.00 0.00 N ATOM 26 CA LYS 7 -5.487 18.628 3.592 1.00 0.00 C ATOM 27 C LYS 7 -4.751 18.118 2.363 1.00 0.00 C ATOM 28 O LYS 7 -4.479 18.878 1.433 1.00 0.00 O ATOM 29 N GLN 8 -4.459 16.814 2.377 1.00 0.00 N ATOM 30 CA GLN 8 -3.849 16.120 1.244 1.00 0.00 C ATOM 31 C GLN 8 -2.418 16.601 1.015 1.00 0.00 C ATOM 32 O GLN 8 -1.466 15.901 1.364 1.00 0.00 O ATOM 33 N VAL 9 -2.275 17.804 0.460 1.00 0.00 N ATOM 34 CA VAL 9 -0.969 18.426 0.252 1.00 0.00 C ATOM 35 C VAL 9 -0.057 17.554 -0.614 1.00 0.00 C ATOM 36 O VAL 9 -0.522 16.801 -1.474 1.00 0.00 O ATOM 37 N VAL 10 1.243 17.717 -0.436 1.00 0.00 N ATOM 38 CA VAL 10 2.219 16.908 -1.138 1.00 0.00 C ATOM 39 C VAL 10 3.404 16.609 -0.223 1.00 0.00 C ATOM 40 O VAL 10 4.284 17.447 -0.031 1.00 0.00 O ATOM 41 N VAL 11 3.390 15.428 0.379 1.00 0.00 N ATOM 42 CA VAL 11 4.446 15.013 1.288 1.00 0.00 C ATOM 43 C VAL 11 4.739 13.530 1.099 1.00 0.00 C ATOM 44 O VAL 11 4.497 12.979 0.023 1.00 0.00 O ATOM 45 N SER 12 5.275 12.892 2.133 1.00 0.00 N ATOM 46 CA SER 12 5.495 11.451 2.110 1.00 0.00 C ATOM 47 C SER 12 4.152 10.727 2.191 1.00 0.00 C ATOM 48 O SER 12 3.642 10.454 3.274 1.00 0.00 O ATOM 49 N ASN 13 3.578 10.451 1.024 1.00 0.00 N ATOM 50 CA ASN 13 2.200 9.975 0.932 1.00 0.00 C ATOM 51 C ASN 13 2.124 8.460 0.792 1.00 0.00 C ATOM 52 O ASN 13 1.151 7.843 1.217 1.00 0.00 O ATOM 53 N LYS 14 3.143 7.862 0.179 1.00 0.00 N ATOM 54 CA LYS 14 3.165 6.413 -0.019 1.00 0.00 C ATOM 55 C LYS 14 3.234 5.712 1.329 1.00 0.00 C ATOM 56 O LYS 14 2.448 4.811 1.614 1.00 0.00 O ATOM 57 N ARG 15 4.196 6.136 2.136 1.00 0.00 N ATOM 58 CA ARG 15 4.299 5.743 3.532 1.00 0.00 C ATOM 59 C ARG 15 5.066 6.813 4.278 1.00 0.00 C ATOM 60 O ARG 15 5.419 7.834 3.685 1.00 0.00 O ATOM 61 N GLU 16 5.306 6.580 5.567 1.00 0.00 N ATOM 62 CA GLU 16 6.056 7.508 6.408 1.00 0.00 C ATOM 63 C GLU 16 5.189 8.722 6.764 1.00 0.00 C ATOM 64 O GLU 16 5.631 9.652 7.438 1.00 0.00 O ATOM 65 N LYS 17 3.933 8.686 6.338 1.00 0.00 N ATOM 66 CA LYS 17 3.012 9.764 6.637 1.00 0.00 C ATOM 67 C LYS 17 1.954 9.345 7.631 1.00 0.00 C ATOM 68 O LYS 17 0.920 9.999 7.771 1.00 0.00 O ATOM 69 N PRO 18 2.208 8.245 8.324 1.00 0.00 N ATOM 70 CA PRO 18 1.266 7.730 9.304 1.00 0.00 C ATOM 71 C PRO 18 1.717 8.149 10.689 1.00 0.00 C ATOM 72 O PRO 18 0.929 8.638 11.502 1.00 0.00 O ATOM 73 N VAL 19 3.004 7.955 10.935 1.00 0.00 N ATOM 74 CA VAL 19 3.558 8.183 12.250 1.00 0.00 C ATOM 75 C VAL 19 3.777 6.874 12.968 1.00 0.00 C ATOM 76 O VAL 19 4.162 6.844 14.135 1.00 0.00 O ATOM 77 N ASN 20 3.527 5.786 12.250 1.00 0.00 N ATOM 78 CA ASN 20 3.655 4.451 12.806 1.00 0.00 C ATOM 79 C ASN 20 4.966 3.803 12.362 1.00 0.00 C ATOM 80 O ASN 20 5.739 3.314 13.185 1.00 0.00 O ATOM 81 N ASP 21 5.209 3.816 11.056 1.00 0.00 N ATOM 82 CA ASP 21 6.423 3.244 10.483 1.00 0.00 C ATOM 83 C ASP 21 6.921 4.139 9.356 1.00 0.00 C ATOM 84 O ASP 21 6.564 3.951 8.193 1.00 0.00 O ATOM 85 N ARG 22 7.747 5.117 9.701 1.00 0.00 N ATOM 86 CA ARG 22 8.095 6.167 8.755 1.00 0.00 C ATOM 87 C ARG 22 9.408 5.896 8.021 1.00 0.00 C ATOM 88 O ARG 22 9.870 6.733 7.249 1.00 0.00 O ATOM 89 N ARG 23 10.009 4.738 8.243 1.00 0.00 N ATOM 90 CA ARG 23 11.300 4.450 7.625 1.00 0.00 C ATOM 91 C ARG 23 11.164 3.445 6.487 1.00 0.00 C ATOM 92 O ARG 23 12.153 3.073 5.854 1.00 0.00 O ATOM 93 N SER 24 9.944 3.001 6.240 1.00 0.00 N ATOM 94 CA SER 24 9.705 1.952 5.257 1.00 0.00 C ATOM 95 C SER 24 9.766 2.489 3.822 1.00 0.00 C ATOM 96 O SER 24 10.544 1.994 3.005 1.00 0.00 O ATOM 97 N ARG 25 8.957 3.503 3.515 1.00 0.00 N ATOM 98 CA ARG 25 8.917 4.064 2.162 1.00 0.00 C ATOM 99 C ARG 25 8.790 5.585 2.241 1.00 0.00 C ATOM 100 O ARG 25 8.702 6.140 3.335 1.00 0.00 O ATOM 101 N GLN 26 8.771 6.248 1.091 1.00 0.00 N ATOM 102 CA GLN 26 8.701 7.695 1.066 1.00 0.00 C ATOM 103 C GLN 26 7.551 8.205 0.225 1.00 0.00 C ATOM 104 O GLN 26 6.387 7.921 0.514 1.00 0.00 O ATOM 105 N GLN 27 7.868 8.947 -0.828 1.00 0.00 N ATOM 106 CA GLN 27 6.840 9.561 -1.654 1.00 0.00 C ATOM 107 C GLN 27 7.183 9.489 -3.135 1.00 0.00 C ATOM 108 O GLN 27 8.058 10.207 -3.620 1.00 0.00 O ATOM 109 N LEU 45 6.497 8.606 -3.844 1.00 0.00 N ATOM 110 CA LEU 45 6.609 8.526 -5.295 1.00 0.00 C ATOM 111 C LEU 45 5.317 7.978 -5.919 1.00 0.00 C ATOM 112 O LEU 45 5.332 6.982 -6.637 1.00 0.00 O ATOM 113 N ASN 46 4.172 8.640 -5.673 1.00 0.00 N ATOM 114 CA ASN 46 2.880 8.211 -6.181 1.00 0.00 C ATOM 115 C ASN 46 2.505 8.924 -7.478 1.00 0.00 C ATOM 116 O ASN 46 3.133 9.919 -7.845 1.00 0.00 O ATOM 117 N GLY 47 1.488 8.399 -8.161 1.00 0.00 N ATOM 118 CA GLY 47 0.970 8.992 -9.400 1.00 0.00 C ATOM 119 C GLY 47 2.025 8.979 -10.508 1.00 0.00 C ATOM 120 O GLY 47 2.964 9.779 -10.510 1.00 0.00 O ATOM 121 N GLY 48 1.862 8.062 -11.444 1.00 0.00 N ATOM 122 CA GLY 48 2.807 7.932 -12.532 1.00 0.00 C ATOM 123 C GLY 48 3.700 6.725 -12.346 1.00 0.00 C ATOM 124 O GLY 48 4.118 6.089 -13.313 1.00 0.00 O ATOM 125 N LEU 49 3.988 6.411 -11.092 1.00 0.00 N ATOM 126 CA LEU 49 4.791 5.248 -10.755 1.00 0.00 C ATOM 127 C LEU 49 3.885 4.072 -10.408 1.00 0.00 C ATOM 128 O LEU 49 2.665 4.149 -10.565 1.00 0.00 O ATOM 129 N GLU 50 4.485 2.993 -9.937 1.00 0.00 N ATOM 130 CA GLU 50 3.741 1.790 -9.595 1.00 0.00 C ATOM 131 C GLU 50 3.212 1.883 -8.162 1.00 0.00 C ATOM 132 O GLU 50 3.753 2.637 -7.352 1.00 0.00 O ATOM 133 N LYS 51 2.163 1.111 -7.869 1.00 0.00 N ATOM 134 CA LYS 51 1.550 1.064 -6.538 1.00 0.00 C ATOM 135 C LYS 51 0.682 2.294 -6.261 1.00 0.00 C ATOM 136 O LYS 51 1.122 3.438 -6.387 1.00 0.00 O ATOM 137 N THR 52 -0.566 2.036 -5.887 1.00 0.00 N ATOM 138 CA THR 52 -1.507 3.089 -5.538 1.00 0.00 C ATOM 139 C THR 52 -2.303 2.684 -4.304 1.00 0.00 C ATOM 140 O THR 52 -2.158 1.566 -3.807 1.00 0.00 O ATOM 141 N PHE 53 -3.137 3.590 -3.814 1.00 0.00 N ATOM 142 CA PHE 53 -4.015 3.281 -2.697 1.00 0.00 C ATOM 143 C PHE 53 -5.186 2.425 -3.175 1.00 0.00 C ATOM 144 O PHE 53 -5.887 2.785 -4.122 1.00 0.00 O ATOM 145 N ARG 54 -5.381 1.282 -2.537 1.00 0.00 N ATOM 146 CA ARG 54 -6.438 0.367 -2.941 1.00 0.00 C ATOM 147 C ARG 54 -7.776 0.807 -2.358 1.00 0.00 C ATOM 148 O ARG 54 -8.736 1.042 -3.097 1.00 0.00 O ATOM 149 N LEU 55 -7.821 0.945 -1.038 1.00 0.00 N ATOM 150 CA LEU 55 -9.034 1.354 -0.347 1.00 0.00 C ATOM 151 C LEU 55 -8.752 1.644 1.118 1.00 0.00 C ATOM 152 O LEU 55 -7.828 1.083 1.707 1.00 0.00 O ATOM 153 N GLN 56 -9.535 2.544 1.682 1.00 0.00 N ATOM 154 CA GLN 56 -9.404 2.926 3.073 1.00 0.00 C ATOM 155 C GLN 56 -10.075 1.887 3.971 1.00 0.00 C ATOM 156 O GLN 56 -11.215 1.483 3.724 1.00 0.00 O ATOM 157 N ALA 57 -9.370 1.449 5.003 1.00 0.00 N ATOM 158 CA ALA 57 -9.904 0.451 5.918 1.00 0.00 C ATOM 159 C ALA 57 -9.638 0.841 7.364 1.00 0.00 C ATOM 160 O ALA 57 -8.486 0.916 7.792 1.00 0.00 O ATOM 161 N GLN 58 -10.721 1.110 8.093 1.00 0.00 N ATOM 162 CA GLN 58 -10.668 1.388 9.526 1.00 0.00 C ATOM 163 C GLN 58 -10.055 2.761 9.816 1.00 0.00 C ATOM 164 O GLN 58 -9.857 3.128 10.976 1.00 0.00 O ATOM 165 N GLN 59 -9.778 3.526 8.767 1.00 0.00 N ATOM 166 CA GLN 59 -9.206 4.847 8.942 1.00 0.00 C ATOM 167 C GLN 59 -7.979 5.049 8.079 1.00 0.00 C ATOM 168 O GLN 59 -7.858 6.055 7.374 1.00 0.00 O ATOM 169 N TYR 60 -7.071 4.086 8.130 1.00 0.00 N ATOM 170 CA TYR 60 -5.877 4.112 7.297 1.00 0.00 C ATOM 171 C TYR 60 -6.177 3.528 5.922 1.00 0.00 C ATOM 172 O TYR 60 -7.163 2.817 5.739 1.00 0.00 O ATOM 173 N HIS 61 -5.334 3.843 4.957 1.00 0.00 N ATOM 174 CA HIS 61 -5.518 3.360 3.600 1.00 0.00 C ATOM 175 C HIS 61 -4.681 2.109 3.354 1.00 0.00 C ATOM 176 O HIS 61 -3.546 2.005 3.822 1.00 0.00 O ATOM 177 N ALA 62 -5.264 1.160 2.632 1.00 0.00 N ATOM 178 CA ALA 62 -4.596 -0.075 2.280 1.00 0.00 C ATOM 179 C ALA 62 -3.714 0.111 1.054 1.00 0.00 C ATOM 180 O ALA 62 -4.202 0.456 -0.024 1.00 0.00 O ATOM 181 N LEU 63 -2.419 -0.108 1.223 1.00 0.00 N ATOM 182 CA LEU 63 -1.489 -0.094 0.104 1.00 0.00 C ATOM 183 C LEU 63 -0.558 -1.296 0.178 1.00 0.00 C ATOM 184 O LEU 63 -0.190 -1.750 1.265 1.00 0.00 O ATOM 185 N THR 64 -0.211 -1.828 -0.980 1.00 0.00 N ATOM 186 CA THR 64 0.765 -2.899 -1.068 1.00 0.00 C ATOM 187 C THR 64 1.893 -2.432 -1.967 1.00 0.00 C ATOM 188 O THR 64 1.695 -2.220 -3.164 1.00 0.00 O ATOM 189 N VAL 65 3.065 -2.264 -1.388 1.00 0.00 N ATOM 190 CA VAL 65 4.165 -1.627 -2.085 1.00 0.00 C ATOM 191 C VAL 65 5.204 -2.651 -2.510 1.00 0.00 C ATOM 192 O VAL 65 6.156 -2.912 -1.792 1.00 0.00 O ATOM 193 N GLY 66 4.992 -3.251 -3.670 1.00 0.00 N ATOM 194 CA GLY 66 5.970 -4.168 -4.255 1.00 0.00 C ATOM 195 C GLY 66 6.188 -5.386 -3.348 1.00 0.00 C ATOM 196 O GLY 66 7.320 -5.785 -3.075 1.00 0.00 O ATOM 197 N GLY 69 5.093 -5.964 -2.872 1.00 0.00 N ATOM 198 CA GLY 69 5.176 -7.192 -2.102 1.00 0.00 C ATOM 199 C GLY 69 5.218 -6.964 -0.602 1.00 0.00 C ATOM 200 O GLY 69 4.972 -7.891 0.175 1.00 0.00 O ATOM 201 N THR 70 5.534 -5.747 -0.180 1.00 0.00 N ATOM 202 CA THR 70 5.518 -5.419 1.239 1.00 0.00 C ATOM 203 C THR 70 4.275 -4.608 1.578 1.00 0.00 C ATOM 204 O THR 70 3.973 -3.596 0.937 1.00 0.00 O ATOM 205 N LEU 71 3.559 -5.071 2.585 1.00 0.00 N ATOM 206 CA LEU 71 2.260 -4.515 2.932 1.00 0.00 C ATOM 207 C LEU 71 2.403 -3.365 3.926 1.00 0.00 C ATOM 208 O LEU 71 3.363 -3.321 4.701 1.00 0.00 O ATOM 209 N SER 72 1.460 -2.427 3.894 1.00 0.00 N ATOM 210 CA SER 72 1.499 -1.318 4.824 1.00 0.00 C ATOM 211 C SER 72 0.171 -0.598 4.955 1.00 0.00 C ATOM 212 O SER 72 -0.786 -0.894 4.233 1.00 0.00 O ATOM 213 N TYR 73 0.121 0.343 5.891 1.00 0.00 N ATOM 214 CA TYR 73 -1.029 1.222 6.073 1.00 0.00 C ATOM 215 C TYR 73 -0.548 2.656 6.207 1.00 0.00 C ATOM 216 O TYR 73 0.507 2.900 6.787 1.00 0.00 O ATOM 217 N LYS 74 -1.314 3.600 5.684 1.00 0.00 N ATOM 218 CA LYS 74 -0.969 5.011 5.810 1.00 0.00 C ATOM 219 C LYS 74 -2.190 5.839 6.170 1.00 0.00 C ATOM 220 O LYS 74 -3.324 5.390 6.000 1.00 0.00 O ATOM 221 N GLY 75 -1.958 7.039 6.673 1.00 0.00 N ATOM 222 CA GLY 75 -3.051 7.901 7.055 1.00 0.00 C ATOM 223 C GLY 75 -3.683 8.571 5.857 1.00 0.00 C ATOM 224 O GLY 75 -3.009 9.270 5.105 1.00 0.00 O ATOM 225 N THR 76 -4.985 8.372 5.695 1.00 0.00 N ATOM 226 CA THR 76 -5.728 8.911 4.558 1.00 0.00 C ATOM 227 C THR 76 -5.754 10.451 4.573 1.00 0.00 C ATOM 228 O THR 76 -6.211 11.088 3.620 1.00 0.00 O ATOM 229 N ARG 77 -5.249 11.041 5.652 1.00 0.00 N ATOM 230 CA ARG 77 -5.211 12.484 5.795 1.00 0.00 C ATOM 231 C ARG 77 -4.277 13.116 4.763 1.00 0.00 C ATOM 232 O ARG 77 -4.562 14.193 4.234 1.00 0.00 O ATOM 233 N PHE 78 -3.163 12.444 4.480 1.00 0.00 N ATOM 234 CA PHE 78 -2.166 12.974 3.574 1.00 0.00 C ATOM 235 C PHE 78 -1.872 12.009 2.432 1.00 0.00 C ATOM 236 O PHE 78 -1.455 10.872 2.642 1.00 0.00 O ATOM 237 N VAL 79 -2.106 12.500 1.229 1.00 0.00 N ATOM 238 CA VAL 79 -1.904 11.761 -0.013 1.00 0.00 C ATOM 239 C VAL 79 -1.694 12.784 -1.112 1.00 0.00 C ATOM 240 O VAL 79 -1.775 13.976 -0.849 1.00 0.00 O ATOM 241 N GLY 80 -1.402 12.355 -2.326 1.00 0.00 N ATOM 242 CA GLY 80 -1.268 13.310 -3.410 1.00 0.00 C ATOM 243 C GLY 80 -2.398 13.166 -4.422 1.00 0.00 C ATOM 244 O GLY 80 -2.562 12.124 -5.058 1.00 0.00 O ATOM 245 N PHE 81 -3.170 14.236 -4.556 1.00 0.00 N ATOM 246 CA PHE 81 -4.236 14.325 -5.548 1.00 0.00 C ATOM 247 C PHE 81 -4.700 15.771 -5.656 1.00 0.00 C ATOM 248 O PHE 81 -5.256 16.190 -6.669 1.00 0.00 O ATOM 249 N VAL 82 -4.439 16.538 -4.598 1.00 0.00 N ATOM 250 CA VAL 82 -4.716 17.969 -4.581 1.00 0.00 C ATOM 251 C VAL 82 -3.556 18.722 -5.231 1.00 0.00 C ATOM 252 O VAL 82 -3.204 19.832 -4.831 1.00 0.00 O ATOM 253 N SER 83 -2.957 18.099 -6.238 1.00 0.00 N ATOM 254 CA SER 83 -1.897 18.730 -7.002 1.00 0.00 C ATOM 255 C SER 83 -2.477 19.837 -7.874 1.00 0.00 C ATOM 256 O SER 83 -3.688 20.045 -7.880 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 204 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.29 34.5 58 49.6 117 ARMSMC SECONDARY STRUCTURE . . 88.35 40.0 30 45.5 66 ARMSMC SURFACE . . . . . . . . 87.83 39.1 46 54.1 85 ARMSMC BURIED . . . . . . . . 74.74 16.7 12 37.5 32 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 41 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.80 (Number of atoms: 51) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.80 51 83.6 61 CRMSCA CRN = ALL/NP . . . . . 0.2118 CRMSCA SECONDARY STRUCTURE . . 12.11 27 81.8 33 CRMSCA SURFACE . . . . . . . . 10.00 40 88.9 45 CRMSCA BURIED . . . . . . . . 13.31 11 68.8 16 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.77 204 68.2 299 CRMSMC SECONDARY STRUCTURE . . 12.04 108 66.3 163 CRMSMC SURFACE . . . . . . . . 9.87 160 72.7 220 CRMSMC BURIED . . . . . . . . 13.52 44 55.7 79 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 745 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 699 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 429 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 555 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 190 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.77 204 20.6 989 CRMSALL SECONDARY STRUCTURE . . 12.04 108 19.3 561 CRMSALL SURFACE . . . . . . . . 9.87 160 21.8 735 CRMSALL BURIED . . . . . . . . 13.52 44 17.3 254 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.077 1.000 0.500 51 83.6 61 ERRCA SECONDARY STRUCTURE . . 11.383 1.000 0.500 27 81.8 33 ERRCA SURFACE . . . . . . . . 9.352 1.000 0.500 40 88.9 45 ERRCA BURIED . . . . . . . . 12.712 1.000 0.500 11 68.8 16 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.060 1.000 0.500 204 68.2 299 ERRMC SECONDARY STRUCTURE . . 11.340 1.000 0.500 108 66.3 163 ERRMC SURFACE . . . . . . . . 9.273 1.000 0.500 160 72.7 220 ERRMC BURIED . . . . . . . . 12.924 1.000 0.500 44 55.7 79 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 745 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 699 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 429 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 555 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 190 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.060 1.000 0.500 204 20.6 989 ERRALL SECONDARY STRUCTURE . . 11.340 1.000 0.500 108 19.3 561 ERRALL SURFACE . . . . . . . . 9.273 1.000 0.500 160 21.8 735 ERRALL BURIED . . . . . . . . 12.924 1.000 0.500 44 17.3 254 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 5 25 51 61 DISTCA CA (P) 0.00 0.00 0.00 8.20 40.98 61 DISTCA CA (RMS) 0.00 0.00 0.00 4.15 7.14 DISTCA ALL (N) 0 2 3 18 109 204 989 DISTALL ALL (P) 0.00 0.20 0.30 1.82 11.02 989 DISTALL ALL (RMS) 0.00 1.54 1.77 4.22 7.44 DISTALL END of the results output