####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 173), selected 21 , name T0562TS296_1-D1 # Molecule2: number of CA atoms 123 ( 1891), selected 21 , name T0562-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0562TS296_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 18 - 38 3.20 3.20 LCS_AVERAGE: 17.07 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 20 - 38 1.63 3.59 LCS_AVERAGE: 14.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 21 - 31 0.99 4.44 LCS_AVERAGE: 7.86 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT W 18 W 18 3 4 21 3 3 3 3 4 4 6 6 8 8 9 11 11 11 15 17 19 21 21 21 LCS_GDT K 19 K 19 4 9 21 3 4 5 6 11 14 17 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT D 20 D 20 5 19 21 3 5 8 15 17 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT T 21 T 21 11 19 21 5 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT V 22 V 22 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT T 23 T 23 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT I 24 I 24 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT E 25 E 25 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT V 26 V 26 11 19 21 3 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT K 27 K 27 11 19 21 3 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT N 28 N 28 11 19 21 3 4 10 13 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT G 29 G 29 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT K 30 K 30 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT I 31 I 31 11 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT V 32 V 32 10 19 21 4 4 9 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT S 33 S 33 10 19 21 3 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT V 34 V 34 10 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT D 35 D 35 10 19 21 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT W 36 W 36 10 19 21 3 7 12 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT N 37 N 37 10 19 21 3 7 12 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_GDT A 38 A 38 10 19 21 3 3 9 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 LCS_AVERAGE LCS_A: 13.14 ( 7.86 14.48 17.07 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 13 16 18 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 GDT PERCENT_AT 4.88 7.32 10.57 13.01 14.63 15.45 15.45 16.26 16.26 16.26 16.26 16.26 16.26 16.26 16.26 16.26 16.26 17.07 17.07 17.07 GDT RMS_LOCAL 0.26 0.54 0.98 1.26 1.51 1.63 1.63 2.07 2.07 2.07 2.07 2.07 2.07 2.07 2.07 2.07 2.07 3.20 3.20 3.20 GDT RMS_ALL_AT 4.64 4.78 4.07 3.79 3.76 3.59 3.59 3.34 3.34 3.34 3.34 3.34 3.34 3.34 3.34 3.34 3.34 3.20 3.20 3.20 # Checking swapping # possible swapping detected: E 25 E 25 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA W 18 W 18 12.195 0 0.279 0.358 21.796 0.714 0.204 LGA K 19 K 19 5.253 0 0.591 0.491 10.235 31.071 19.947 LGA D 20 D 20 1.998 0 0.154 0.362 3.344 65.119 62.143 LGA T 21 T 21 1.582 0 0.089 1.219 2.995 77.262 70.884 LGA V 22 V 22 2.640 0 0.168 1.134 3.438 59.048 56.190 LGA T 23 T 23 2.199 0 0.148 0.164 2.580 68.810 65.986 LGA I 24 I 24 1.977 0 0.141 0.610 2.168 68.810 69.821 LGA E 25 E 25 1.285 0 0.173 0.706 1.520 85.952 83.492 LGA V 26 V 26 0.872 0 0.078 1.194 3.970 85.952 75.102 LGA K 27 K 27 1.412 0 0.249 1.014 6.367 70.000 51.164 LGA N 28 N 28 2.902 0 0.375 0.500 6.290 54.048 40.357 LGA G 29 G 29 1.948 0 0.597 0.597 3.197 67.143 67.143 LGA K 30 K 30 1.112 0 0.047 0.684 3.155 79.286 69.630 LGA I 31 I 31 0.991 0 0.059 0.092 1.512 83.810 84.881 LGA V 32 V 32 1.977 0 0.676 0.979 4.146 63.452 61.361 LGA S 33 S 33 1.532 0 0.178 0.779 4.109 68.929 62.937 LGA V 34 V 34 0.603 0 0.053 1.117 3.094 92.857 83.537 LGA D 35 D 35 0.383 0 0.150 0.991 3.881 95.357 78.750 LGA W 36 W 36 0.689 0 0.126 1.223 11.706 88.214 41.463 LGA N 37 N 37 1.445 0 0.100 0.999 3.372 77.381 68.393 LGA A 38 A 38 2.718 0 0.169 0.235 3.414 57.262 58.762 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 169 169 100.00 123 SUMMARY(RMSD_GDC): 3.204 3.176 5.132 11.711 10.343 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 123 4.0 20 2.07 13.211 14.264 0.923 LGA_LOCAL RMSD: 2.066 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.339 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 3.204 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.611812 * X + 0.222212 * Y + -0.759150 * Z + 38.944340 Y_new = 0.495080 * X + -0.640932 * Y + -0.586602 * Z + 11.885324 Z_new = -0.616913 * X + -0.734730 * Y + 0.282117 * Z + -7.916937 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.461265 0.664815 -1.204182 [DEG: 141.0201 38.0911 -68.9945 ] ZXZ: -0.912919 1.284797 -2.443140 [DEG: -52.3064 73.6134 -139.9816 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0562TS296_1-D1 REMARK 2: T0562-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0562TS296_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 123 4.0 20 2.07 14.264 3.20 REMARK ---------------------------------------------------------- MOLECULE T0562TS296_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0562 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N TRP 18 -5.078 -3.281 3.480 1.00 1.00 N ATOM 2 CA TRP 18 -6.341 -2.604 3.103 1.00 1.00 C ATOM 3 C TRP 18 -6.675 -2.890 1.674 1.00 1.00 C ATOM 4 O TRP 18 -6.306 -3.935 1.141 1.00 1.00 O ATOM 5 H1 TRP 18 -4.753 -3.196 4.315 1.00 1.00 H ATOM 6 H2 TRP 18 -4.316 -3.086 3.043 1.00 1.00 H ATOM 7 H3 TRP 18 -5.013 -4.177 3.424 1.00 1.00 H ATOM 8 CB TRP 18 -6.232 -1.096 3.338 1.00 1.00 C ATOM 11 CG TRP 18 -6.130 -0.720 4.784 1.00 1.00 C ATOM 12 CD1 TRP 18 -4.996 -0.388 5.468 1.00 1.00 C ATOM 14 NE1 TRP 18 -5.297 -0.103 6.778 1.00 1.00 N ATOM 15 CD2 TRP 18 -7.206 -0.639 5.728 1.00 1.00 C ATOM 16 CE2 TRP 18 -6.650 -0.251 6.960 1.00 1.00 C ATOM 17 CH2 TRP 18 -8.769 -0.294 8.002 1.00 1.00 H ATOM 18 CZ2 TRP 18 -7.424 -0.076 8.106 1.00 1.00 C ATOM 19 CE3 TRP 18 -8.585 -0.856 5.649 1.00 1.00 C ATOM 20 CZ3 TRP 18 -9.348 -0.680 6.788 1.00 1.00 C ATOM 21 N LYS 19 -7.397 -1.965 1.015 1.00 1.00 N ATOM 22 CA LYS 19 -7.794 -2.199 -0.343 1.00 1.00 C ATOM 23 C LYS 19 -6.579 -2.300 -1.207 1.00 1.00 C ATOM 24 O LYS 19 -6.496 -3.183 -2.058 1.00 1.00 O ATOM 26 CB LYS 19 -8.722 -1.082 -0.829 1.00 1.00 C ATOM 27 CD LYS 19 -10.961 0.042 -0.708 1.00 1.00 C ATOM 28 CE LYS 19 -12.338 0.030 -0.063 1.00 1.00 C ATOM 29 CG LYS 19 -10.103 -1.102 -0.195 1.00 1.00 C ATOM 33 NZ LYS 19 -13.176 1.171 -0.524 1.00 1.00 N ATOM 34 N ASP 20 -5.591 -1.408 -1.004 1.00 1.00 N ATOM 35 CA ASP 20 -4.424 -1.448 -1.840 1.00 1.00 C ATOM 36 C ASP 20 -3.674 -2.685 -1.465 1.00 1.00 C ATOM 37 O ASP 20 -3.859 -3.225 -0.377 1.00 1.00 O ATOM 39 CB ASP 20 -3.589 -0.179 -1.656 1.00 1.00 C ATOM 40 CG ASP 20 -4.254 1.047 -2.249 1.00 1.00 C ATOM 41 OD1 ASP 20 -5.233 0.883 -3.009 1.00 1.00 O ATOM 42 OD2 ASP 20 -3.798 2.171 -1.955 1.00 1.00 O ATOM 43 N THR 21 -2.823 -3.187 -2.379 1.00 1.00 N ATOM 44 CA THR 21 -2.090 -4.382 -2.100 1.00 1.00 C ATOM 45 C THR 21 -0.676 -3.985 -1.856 1.00 1.00 C ATOM 46 O THR 21 -0.106 -3.189 -2.602 1.00 1.00 O ATOM 48 CB THR 21 -2.201 -5.395 -3.255 1.00 1.00 C ATOM 50 OG1 THR 21 -3.573 -5.761 -3.443 1.00 1.00 O ATOM 51 CG2 THR 21 -1.401 -6.650 -2.942 1.00 1.00 C ATOM 52 N VAL 22 -0.081 -4.519 -0.774 1.00 1.00 N ATOM 53 CA VAL 22 1.277 -4.191 -0.470 1.00 1.00 C ATOM 54 C VAL 22 1.917 -5.437 0.039 1.00 1.00 C ATOM 55 O VAL 22 1.244 -6.335 0.544 1.00 1.00 O ATOM 57 CB VAL 22 1.365 -3.037 0.547 1.00 1.00 C ATOM 58 CG1 VAL 22 0.749 -1.772 -0.030 1.00 1.00 C ATOM 59 CG2 VAL 22 0.679 -3.421 1.849 1.00 1.00 C ATOM 60 N THR 23 3.249 -5.532 -0.114 1.00 1.00 N ATOM 61 CA THR 23 3.955 -6.663 0.402 1.00 1.00 C ATOM 62 C THR 23 4.882 -6.111 1.431 1.00 1.00 C ATOM 63 O THR 23 5.513 -5.077 1.214 1.00 1.00 O ATOM 65 CB THR 23 4.695 -7.424 -0.714 1.00 1.00 C ATOM 67 OG1 THR 23 3.752 -7.890 -1.685 1.00 1.00 O ATOM 68 CG2 THR 23 5.437 -8.621 -0.140 1.00 1.00 C ATOM 69 N ILE 24 4.972 -6.776 2.597 1.00 1.00 N ATOM 70 CA ILE 24 5.815 -6.267 3.633 1.00 1.00 C ATOM 71 C ILE 24 6.760 -7.343 4.031 1.00 1.00 C ATOM 72 O ILE 24 6.427 -8.527 4.013 1.00 1.00 O ATOM 74 CB ILE 24 4.992 -5.766 4.835 1.00 1.00 C ATOM 75 CD1 ILE 24 3.053 -4.236 5.467 1.00 1.00 C ATOM 76 CG1 ILE 24 4.055 -4.634 4.406 1.00 1.00 C ATOM 77 CG2 ILE 24 5.911 -5.342 5.970 1.00 1.00 C ATOM 78 N GLU 25 7.997 -6.941 4.374 1.00 1.00 N ATOM 79 CA GLU 25 8.966 -7.881 4.839 1.00 1.00 C ATOM 80 C GLU 25 9.057 -7.661 6.309 1.00 1.00 C ATOM 81 O GLU 25 8.994 -6.525 6.779 1.00 1.00 O ATOM 83 CB GLU 25 10.300 -7.677 4.117 1.00 1.00 C ATOM 84 CD GLU 25 11.588 -7.756 1.946 1.00 1.00 C ATOM 85 CG GLU 25 10.244 -7.947 2.623 1.00 1.00 C ATOM 86 OE1 GLU 25 12.536 -7.310 2.625 1.00 1.00 O ATOM 87 OE2 GLU 25 11.691 -8.052 0.737 1.00 1.00 O ATOM 88 N VAL 26 9.174 -8.752 7.084 1.00 1.00 N ATOM 89 CA VAL 26 9.255 -8.586 8.502 1.00 1.00 C ATOM 90 C VAL 26 10.515 -9.239 8.960 1.00 1.00 C ATOM 91 O VAL 26 11.001 -10.191 8.353 1.00 1.00 O ATOM 93 CB VAL 26 8.020 -9.171 9.211 1.00 1.00 C ATOM 94 CG1 VAL 26 6.758 -8.447 8.767 1.00 1.00 C ATOM 95 CG2 VAL 26 7.906 -10.664 8.936 1.00 1.00 C ATOM 96 N LYS 27 11.081 -8.700 10.052 1.00 1.00 N ATOM 97 CA LYS 27 12.269 -9.217 10.650 1.00 1.00 C ATOM 98 C LYS 27 11.783 -9.891 11.886 1.00 1.00 C ATOM 99 O LYS 27 10.634 -10.325 11.938 1.00 1.00 O ATOM 101 CB LYS 27 13.271 -8.091 10.912 1.00 1.00 C ATOM 102 CD LYS 27 14.809 -6.338 9.984 1.00 1.00 C ATOM 103 CE LYS 27 15.326 -5.661 8.726 1.00 1.00 C ATOM 104 CG LYS 27 13.790 -7.416 9.653 1.00 1.00 C ATOM 108 NZ LYS 27 16.317 -4.594 9.036 1.00 1.00 N ATOM 109 N ASN 28 12.647 -10.031 12.906 1.00 1.00 N ATOM 110 CA ASN 28 12.160 -10.644 14.103 1.00 1.00 C ATOM 111 C ASN 28 11.052 -9.765 14.584 1.00 1.00 C ATOM 112 O ASN 28 9.977 -10.238 14.948 1.00 1.00 O ATOM 114 CB ASN 28 13.292 -10.810 15.119 1.00 1.00 C ATOM 115 CG ASN 28 14.259 -11.914 14.738 1.00 1.00 C ATOM 116 OD1 ASN 28 13.932 -12.791 13.938 1.00 1.00 O ATOM 119 ND2 ASN 28 15.456 -11.875 15.311 1.00 1.00 N ATOM 120 N GLY 29 11.279 -8.440 14.567 1.00 1.00 N ATOM 121 CA GLY 29 10.230 -7.543 14.938 1.00 1.00 C ATOM 122 C GLY 29 10.549 -6.246 14.286 1.00 1.00 C ATOM 123 O GLY 29 11.356 -5.465 14.787 1.00 1.00 O ATOM 125 N LYS 30 9.914 -5.973 13.134 1.00 1.00 N ATOM 126 CA LYS 30 10.230 -4.738 12.497 1.00 1.00 C ATOM 127 C LYS 30 9.477 -4.688 11.214 1.00 1.00 C ATOM 128 O LYS 30 8.897 -5.680 10.776 1.00 1.00 O ATOM 130 CB LYS 30 11.740 -4.618 12.280 1.00 1.00 C ATOM 131 CD LYS 30 13.692 -3.204 11.584 1.00 1.00 C ATOM 132 CE LYS 30 14.132 -1.865 11.016 1.00 1.00 C ATOM 133 CG LYS 30 12.179 -3.286 11.696 1.00 1.00 C ATOM 137 NZ LYS 30 15.614 -1.771 10.896 1.00 1.00 N ATOM 138 N ILE 31 9.461 -3.502 10.584 1.00 1.00 N ATOM 139 CA ILE 31 8.810 -3.366 9.318 1.00 1.00 C ATOM 140 C ILE 31 9.911 -3.221 8.325 1.00 1.00 C ATOM 141 O ILE 31 10.811 -2.399 8.489 1.00 1.00 O ATOM 143 CB ILE 31 7.832 -2.176 9.311 1.00 1.00 C ATOM 144 CD1 ILE 31 5.871 -1.162 10.585 1.00 1.00 C ATOM 145 CG1 ILE 31 6.732 -2.384 10.355 1.00 1.00 C ATOM 146 CG2 ILE 31 7.259 -1.967 7.918 1.00 1.00 C ATOM 147 N VAL 32 9.872 -4.042 7.264 1.00 1.00 N ATOM 148 CA VAL 32 10.903 -4.004 6.277 1.00 1.00 C ATOM 149 C VAL 32 10.291 -3.252 5.143 1.00 1.00 C ATOM 150 O VAL 32 9.107 -2.927 5.217 1.00 1.00 O ATOM 152 CB VAL 32 11.371 -5.421 5.895 1.00 1.00 C ATOM 153 CG1 VAL 32 12.421 -5.356 4.798 1.00 1.00 C ATOM 154 CG2 VAL 32 11.912 -6.150 7.115 1.00 1.00 C ATOM 155 N SER 33 11.091 -2.936 4.101 1.00 1.00 N ATOM 156 CA SER 33 10.678 -2.125 2.993 1.00 1.00 C ATOM 157 C SER 33 9.324 -2.544 2.536 1.00 1.00 C ATOM 158 O SER 33 9.099 -3.666 2.086 1.00 1.00 O ATOM 160 CB SER 33 11.690 -2.224 1.850 1.00 1.00 C ATOM 162 OG SER 33 11.253 -1.496 0.716 1.00 1.00 O ATOM 163 N VAL 34 8.375 -1.605 2.685 1.00 1.00 N ATOM 164 CA VAL 34 7.022 -1.832 2.297 1.00 1.00 C ATOM 165 C VAL 34 7.002 -1.681 0.817 1.00 1.00 C ATOM 166 O VAL 34 7.641 -0.786 0.264 1.00 1.00 O ATOM 168 CB VAL 34 6.061 -0.864 3.010 1.00 1.00 C ATOM 169 CG1 VAL 34 4.641 -1.047 2.495 1.00 1.00 C ATOM 170 CG2 VAL 34 6.116 -1.070 4.516 1.00 1.00 C ATOM 171 N ASP 35 6.290 -2.587 0.126 1.00 1.00 N ATOM 172 CA ASP 35 6.249 -2.494 -1.299 1.00 1.00 C ATOM 173 C ASP 35 4.844 -2.187 -1.689 1.00 1.00 C ATOM 174 O ASP 35 3.969 -3.047 -1.612 1.00 1.00 O ATOM 176 CB ASP 35 6.748 -3.793 -1.936 1.00 1.00 C ATOM 177 CG ASP 35 6.795 -3.720 -3.449 1.00 1.00 C ATOM 178 OD1 ASP 35 6.280 -2.732 -4.012 1.00 1.00 O ATOM 179 OD2 ASP 35 7.346 -4.652 -4.072 1.00 1.00 O ATOM 180 N TRP 36 4.583 -0.934 -2.108 1.00 1.00 N ATOM 181 CA TRP 36 3.256 -0.634 -2.545 1.00 1.00 C ATOM 182 C TRP 36 3.132 -1.164 -3.929 1.00 1.00 C ATOM 183 O TRP 36 4.064 -1.091 -4.728 1.00 1.00 O ATOM 185 CB TRP 36 2.995 0.871 -2.472 1.00 1.00 C ATOM 188 CG TRP 36 2.917 1.398 -1.071 1.00 1.00 C ATOM 189 CD1 TRP 36 3.960 1.621 -0.220 1.00 1.00 C ATOM 191 NE1 TRP 36 3.498 2.109 0.980 1.00 1.00 N ATOM 192 CD2 TRP 36 1.730 1.769 -0.359 1.00 1.00 C ATOM 193 CE2 TRP 36 2.130 2.208 0.916 1.00 1.00 C ATOM 194 CH2 TRP 36 -0.106 2.639 1.539 1.00 1.00 H ATOM 195 CZ2 TRP 36 1.218 2.645 1.876 1.00 1.00 C ATOM 196 CE3 TRP 36 0.369 1.774 -0.676 1.00 1.00 C ATOM 197 CZ3 TRP 36 -0.532 2.209 0.278 1.00 1.00 C ATOM 198 N ASN 37 1.958 -1.739 -4.235 1.00 1.00 N ATOM 199 CA ASN 37 1.709 -2.255 -5.542 1.00 1.00 C ATOM 200 C ASN 37 0.433 -1.627 -5.985 1.00 1.00 C ATOM 201 O ASN 37 -0.132 -0.790 -5.285 1.00 1.00 O ATOM 203 CB ASN 37 1.660 -3.784 -5.513 1.00 1.00 C ATOM 204 CG ASN 37 3.008 -4.404 -5.200 1.00 1.00 C ATOM 205 OD1 ASN 37 3.903 -4.427 -6.045 1.00 1.00 O ATOM 208 ND2 ASN 37 3.155 -4.911 -3.982 1.00 1.00 N ATOM 209 N ALA 38 -0.031 -1.992 -7.192 1.00 1.00 N ATOM 210 CA ALA 38 -1.237 -1.426 -7.717 1.00 1.00 C ATOM 211 C ALA 38 -2.395 -1.801 -6.800 1.00 1.00 C ATOM 212 O ALA 38 -2.153 -2.537 -5.807 1.00 1.00 O ATOM 214 OXT ALA 38 -3.541 -1.357 -7.076 1.00 1.00 O ATOM 215 CB ALA 38 -1.475 -1.912 -9.139 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 169 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 62.00 55.0 40 16.4 244 ARMSMC SECONDARY STRUCTURE . . 53.74 61.1 36 33.3 108 ARMSMC SURFACE . . . . . . . . 74.96 33.3 18 12.2 148 ARMSMC BURIED . . . . . . . . 48.90 72.7 22 22.9 96 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.90 36.8 19 19.0 100 ARMSSC1 RELIABLE SIDE CHAINS . 87.49 46.7 15 16.3 92 ARMSSC1 SECONDARY STRUCTURE . . 98.45 33.3 18 37.5 48 ARMSSC1 SURFACE . . . . . . . . 108.01 12.5 8 12.7 63 ARMSSC1 BURIED . . . . . . . . 86.03 54.5 11 29.7 37 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.43 50.0 12 14.8 81 ARMSSC2 RELIABLE SIDE CHAINS . 69.78 60.0 10 14.3 70 ARMSSC2 SECONDARY STRUCTURE . . 81.59 54.5 11 30.6 36 ARMSSC2 SURFACE . . . . . . . . 78.52 50.0 6 11.1 54 ARMSSC2 BURIED . . . . . . . . 82.29 50.0 6 22.2 27 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.44 50.0 4 11.8 34 ARMSSC3 RELIABLE SIDE CHAINS . 65.44 50.0 4 13.3 30 ARMSSC3 SECONDARY STRUCTURE . . 65.44 50.0 4 25.0 16 ARMSSC3 SURFACE . . . . . . . . 75.54 33.3 3 10.7 28 ARMSSC3 BURIED . . . . . . . . 3.01 100.0 1 16.7 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 11.35 100.0 3 16.7 18 ARMSSC4 RELIABLE SIDE CHAINS . 11.35 100.0 3 16.7 18 ARMSSC4 SECONDARY STRUCTURE . . 11.35 100.0 3 30.0 10 ARMSSC4 SURFACE . . . . . . . . 13.90 100.0 2 14.3 14 ARMSSC4 BURIED . . . . . . . . 0.13 100.0 1 25.0 4 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.20 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.20 21 17.1 123 CRMSCA CRN = ALL/NP . . . . . 0.1525 CRMSCA SECONDARY STRUCTURE . . 3.22 19 35.2 54 CRMSCA SURFACE . . . . . . . . 1.95 9 12.0 75 CRMSCA BURIED . . . . . . . . 3.89 12 25.0 48 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.26 104 17.2 604 CRMSMC SECONDARY STRUCTURE . . 3.25 95 35.2 270 CRMSMC SURFACE . . . . . . . . 2.33 44 12.0 366 CRMSMC BURIED . . . . . . . . 3.80 60 25.2 238 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.00 85 6.1 1399 CRMSSC RELIABLE SIDE CHAINS . 7.37 73 5.4 1349 CRMSSC SECONDARY STRUCTURE . . 7.05 81 11.8 687 CRMSSC SURFACE . . . . . . . . 4.78 38 4.6 834 CRMSSC BURIED . . . . . . . . 8.37 47 8.3 565 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.44 169 8.9 1891 CRMSALL SECONDARY STRUCTURE . . 5.53 157 17.4 903 CRMSALL SURFACE . . . . . . . . 3.77 74 6.5 1134 CRMSALL BURIED . . . . . . . . 6.45 95 12.5 757 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.532 0.345 0.191 21 17.1 123 ERRCA SECONDARY STRUCTURE . . 1.478 0.329 0.184 19 35.2 54 ERRCA SURFACE . . . . . . . . 0.885 0.290 0.183 9 12.0 75 ERRCA BURIED . . . . . . . . 2.016 0.387 0.196 12 25.0 48 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.627 0.362 0.190 104 17.2 604 ERRMC SECONDARY STRUCTURE . . 1.575 0.349 0.185 95 35.2 270 ERRMC SURFACE . . . . . . . . 1.142 0.315 0.169 44 12.0 366 ERRMC BURIED . . . . . . . . 1.983 0.396 0.205 60 25.2 238 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.122 0.523 0.263 85 6.1 1399 ERRSC RELIABLE SIDE CHAINS . 4.341 0.522 0.262 73 5.4 1349 ERRSC SECONDARY STRUCTURE . . 4.094 0.515 0.258 81 11.8 687 ERRSC SURFACE . . . . . . . . 3.081 0.511 0.258 38 4.6 834 ERRSC BURIED . . . . . . . . 4.963 0.533 0.266 47 8.3 565 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.855 0.440 0.226 169 8.9 1891 ERRALL SECONDARY STRUCTURE . . 2.852 0.432 0.222 157 17.4 903 ERRALL SURFACE . . . . . . . . 2.115 0.413 0.214 74 6.5 1134 ERRALL BURIED . . . . . . . . 3.430 0.462 0.235 95 12.5 757 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 5 10 16 20 20 21 123 DISTCA CA (P) 4.07 8.13 13.01 16.26 16.26 123 DISTCA CA (RMS) 0.81 1.22 1.77 2.25 2.25 DISTCA ALL (N) 17 59 100 138 156 169 1891 DISTALL ALL (P) 0.90 3.12 5.29 7.30 8.25 1891 DISTALL ALL (RMS) 0.78 1.36 1.93 2.54 3.38 DISTALL END of the results output