####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 27 ( 205), selected 27 , name T0562TS218_1_2-D1 # Molecule2: number of CA atoms 123 ( 1891), selected 27 , name T0562-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0562TS218_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 95 - 120 4.63 5.14 LCS_AVERAGE: 21.08 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 105 - 120 1.85 6.72 LCS_AVERAGE: 10.33 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 107 - 120 0.77 6.94 LCS_AVERAGE: 8.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 27 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 94 D 94 5 6 24 3 5 5 5 6 6 7 9 11 16 16 18 19 23 24 24 26 27 27 27 LCS_GDT G 95 G 95 5 6 26 3 5 5 5 6 6 7 9 11 16 16 18 19 23 24 24 26 27 27 27 LCS_GDT H 96 H 96 5 6 26 3 5 5 5 6 6 7 9 11 16 16 18 21 23 24 24 26 27 27 27 LCS_GDT T 97 T 97 5 6 26 3 5 5 5 7 8 11 13 15 18 23 23 24 24 24 24 26 27 27 27 LCS_GDT D 98 D 98 5 9 26 3 5 5 5 8 9 13 18 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT A 99 A 99 5 9 26 3 4 5 5 7 9 14 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT I 100 I 100 6 9 26 3 4 7 12 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT S 101 S 101 6 9 26 4 6 10 13 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT G 102 G 102 6 9 26 3 5 6 7 9 14 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT A 103 A 103 6 9 26 3 6 10 12 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT T 104 T 104 6 9 26 3 5 6 6 8 12 18 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT I 105 I 105 6 16 26 3 5 6 7 12 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT K 106 K 106 11 16 26 3 3 5 9 14 15 16 18 21 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT V 107 V 107 14 16 26 5 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT K 108 K 108 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT K 109 K 109 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT F 110 F 110 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT F 111 F 111 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT D 112 D 112 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT L 113 L 113 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT A 114 A 114 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT Q 115 Q 115 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT K 116 K 116 14 16 26 6 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT A 117 A 117 14 16 26 6 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT L 118 L 118 14 16 26 6 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT K 119 K 119 14 16 26 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_GDT D 120 D 120 14 16 26 3 3 9 14 14 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 LCS_AVERAGE LCS_A: 13.21 ( 8.22 10.33 21.08 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 13 13 14 16 18 19 20 22 22 23 23 24 24 24 24 26 27 27 27 GDT PERCENT_AT 7.32 10.57 10.57 11.38 13.01 14.63 15.45 16.26 17.89 17.89 18.70 18.70 19.51 19.51 19.51 19.51 21.14 21.95 21.95 21.95 GDT RMS_LOCAL 0.33 0.56 0.56 0.77 1.60 1.93 2.11 2.25 2.74 2.60 2.91 2.91 3.35 3.35 3.35 3.35 4.82 5.02 5.02 5.02 GDT RMS_ALL_AT 7.11 6.95 6.95 6.94 7.02 6.72 6.78 6.65 6.14 6.66 6.29 6.29 5.91 5.91 5.91 5.91 5.05 5.02 5.02 5.02 # Checking swapping # possible swapping detected: F 111 F 111 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 94 D 94 19.471 0 0.183 1.041 23.043 0.000 0.000 LGA G 95 G 95 17.041 0 0.553 0.553 18.045 0.000 0.000 LGA H 96 H 96 14.564 0 0.141 1.207 20.193 0.000 0.000 LGA T 97 T 97 10.306 0 0.138 0.152 11.573 1.071 1.497 LGA D 98 D 98 7.413 0 0.655 1.060 9.583 9.762 7.024 LGA A 99 A 99 3.864 0 0.722 0.689 3.864 52.143 50.381 LGA I 100 I 100 1.884 0 0.586 0.712 4.762 58.452 57.202 LGA S 101 S 101 1.419 0 0.089 0.080 2.861 73.452 77.619 LGA G 102 G 102 3.890 0 0.155 0.155 3.890 50.119 50.119 LGA A 103 A 103 1.415 0 0.413 0.403 3.070 65.238 72.190 LGA T 104 T 104 4.733 0 0.251 0.416 7.416 30.833 23.946 LGA I 105 I 105 3.355 0 0.623 0.781 4.268 46.786 47.619 LGA K 106 K 106 5.384 0 0.576 1.105 13.076 33.214 16.243 LGA V 107 V 107 2.820 0 0.238 0.447 3.231 57.262 61.633 LGA K 108 K 108 2.223 0 0.035 0.806 4.615 64.881 53.915 LGA K 109 K 109 2.935 0 0.201 1.215 4.458 55.357 49.577 LGA F 110 F 110 2.508 0 0.057 0.822 3.915 62.976 56.104 LGA F 111 F 111 0.822 0 0.044 0.901 6.387 90.595 61.429 LGA D 112 D 112 1.237 0 0.206 0.557 2.995 81.429 76.250 LGA L 113 L 113 1.990 0 0.234 0.900 7.444 72.857 49.881 LGA A 114 A 114 1.529 0 0.167 0.158 2.022 79.405 76.476 LGA Q 115 Q 115 0.921 0 0.049 0.907 3.105 85.952 78.995 LGA K 116 K 116 1.242 0 0.316 0.906 3.263 81.548 71.693 LGA A 117 A 117 0.632 0 0.131 0.176 0.913 90.476 90.476 LGA L 118 L 118 1.295 0 0.292 0.545 2.898 81.429 74.167 LGA K 119 K 119 1.439 0 0.042 0.976 8.756 72.976 50.212 LGA D 120 D 120 3.018 0 0.608 1.336 6.530 39.881 42.679 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 27 108 108 100.00 205 205 100.00 123 SUMMARY(RMSD_GDC): 5.023 4.912 6.021 11.692 10.547 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 27 123 4.0 20 2.25 14.431 13.986 0.853 LGA_LOCAL RMSD: 2.245 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.653 Number of assigned atoms: 27 Std_ASGN_ATOMS RMSD: 5.023 Standard rmsd on all 27 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.852577 * X + 0.474725 * Y + -0.218517 * Z + 4.340508 Y_new = 0.487256 * X + -0.570923 * Y + 0.660779 * Z + -10.980450 Z_new = 0.188932 * X + -0.669838 * Y + -0.718068 * Z + 16.663683 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.519207 -0.190074 -2.390930 [DEG: 29.7484 -10.8904 -136.9902 ] ZXZ: -2.822217 2.371819 2.866679 [DEG: -161.7012 135.8952 164.2486 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0562TS218_1_2-D1 REMARK 2: T0562-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0562TS218_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 27 123 4.0 20 2.25 13.986 5.02 REMARK ---------------------------------------------------------- MOLECULE T0562TS218_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0562 REMARK PARENT N/A ATOM 118 N ASP 94 -2.815 5.548 17.949 1.00 0.00 N ATOM 119 CA ASP 94 -2.292 6.702 18.648 1.00 0.00 C ATOM 120 C ASP 94 -0.918 7.129 18.218 1.00 0.00 C ATOM 121 O ASP 94 -0.619 8.321 18.249 1.00 0.00 O ATOM 122 CB ASP 94 -2.268 6.555 20.189 1.00 0.00 C ATOM 123 CG ASP 94 -3.696 6.386 20.728 1.00 0.00 C ATOM 124 OD1 ASP 94 -4.674 6.607 19.961 1.00 0.00 O ATOM 125 OD2 ASP 94 -3.831 6.010 21.922 1.00 0.00 O ATOM 126 N GLY 95 -0.068 6.205 17.752 1.00 0.00 N ATOM 127 CA GLY 95 1.305 6.558 17.519 1.00 0.00 C ATOM 128 C GLY 95 1.269 6.875 16.056 1.00 0.00 C ATOM 129 O GLY 95 0.389 6.380 15.353 1.00 0.00 O ATOM 130 N HIS 96 2.187 7.726 15.545 1.00 0.00 N ATOM 131 CA HIS 96 2.020 8.209 14.209 1.00 0.00 C ATOM 132 C HIS 96 3.370 8.587 13.709 1.00 0.00 C ATOM 133 O HIS 96 4.283 8.798 14.505 1.00 0.00 O ATOM 134 CB HIS 96 1.134 9.461 14.131 1.00 0.00 C ATOM 135 CG HIS 96 1.665 10.643 14.895 1.00 0.00 C ATOM 136 ND1 HIS 96 1.575 10.689 16.276 1.00 0.00 N ATOM 137 CD2 HIS 96 2.087 11.843 14.407 1.00 0.00 C ATOM 138 CE1 HIS 96 1.923 11.921 16.588 1.00 0.00 C ATOM 139 NE2 HIS 96 2.089 12.695 15.492 1.00 0.00 N ATOM 140 N THR 97 3.505 8.688 12.368 1.00 0.00 N ATOM 141 CA THR 97 4.728 9.106 11.744 1.00 0.00 C ATOM 142 C THR 97 4.262 10.048 10.671 1.00 0.00 C ATOM 143 O THR 97 3.095 10.025 10.271 1.00 0.00 O ATOM 144 CB THR 97 5.583 7.984 11.180 1.00 0.00 C ATOM 145 OG1 THR 97 6.777 8.468 10.567 1.00 0.00 O ATOM 146 CG2 THR 97 4.773 7.092 10.210 1.00 0.00 C ATOM 147 N ASP 98 5.198 10.888 10.195 1.00 0.00 N ATOM 148 CA ASP 98 4.980 11.843 9.158 1.00 0.00 C ATOM 149 C ASP 98 4.938 11.169 7.838 1.00 0.00 C ATOM 150 O ASP 98 5.446 10.067 7.616 1.00 0.00 O ATOM 151 CB ASP 98 6.118 12.883 9.035 1.00 0.00 C ATOM 152 CG ASP 98 5.877 14.015 10.021 1.00 0.00 C ATOM 153 OD1 ASP 98 4.812 14.028 10.694 1.00 0.00 O ATOM 154 OD2 ASP 98 6.775 14.892 10.112 1.00 0.00 O ATOM 155 N ALA 99 4.391 11.924 6.887 1.00 0.00 N ATOM 156 CA ALA 99 3.848 11.413 5.678 1.00 0.00 C ATOM 157 C ALA 99 4.812 12.062 4.734 1.00 0.00 C ATOM 158 O ALA 99 5.730 12.752 5.170 1.00 0.00 O ATOM 159 CB ALA 99 2.397 11.865 5.396 1.00 0.00 C ATOM 160 N ILE 100 4.645 11.854 3.423 1.00 0.00 N ATOM 161 CA ILE 100 5.550 12.347 2.434 1.00 0.00 C ATOM 162 C ILE 100 4.832 13.538 1.881 1.00 0.00 C ATOM 163 O ILE 100 3.681 13.431 1.450 1.00 0.00 O ATOM 164 CB ILE 100 5.818 11.335 1.341 1.00 0.00 C ATOM 165 CG1 ILE 100 6.265 9.968 1.917 1.00 0.00 C ATOM 166 CG2 ILE 100 6.822 11.899 0.311 1.00 0.00 C ATOM 167 CD1 ILE 100 7.670 9.968 2.528 1.00 0.00 C ATOM 168 N SER 101 5.517 14.698 1.923 1.00 0.00 N ATOM 169 CA SER 101 5.128 15.912 1.279 1.00 0.00 C ATOM 170 C SER 101 4.937 15.647 -0.172 1.00 0.00 C ATOM 171 O SER 101 5.845 15.180 -0.856 1.00 0.00 O ATOM 172 CB SER 101 6.217 16.981 1.450 1.00 0.00 C ATOM 173 OG SER 101 6.238 17.409 2.803 1.00 0.00 O ATOM 174 N GLY 102 3.720 15.945 -0.664 1.00 0.00 N ATOM 175 CA GLY 102 3.436 15.864 -2.061 1.00 0.00 C ATOM 176 C GLY 102 2.926 14.505 -2.396 1.00 0.00 C ATOM 177 O GLY 102 2.699 14.227 -3.574 1.00 0.00 O ATOM 178 N ALA 103 2.758 13.607 -1.397 1.00 0.00 N ATOM 179 CA ALA 103 2.498 12.251 -1.744 1.00 0.00 C ATOM 180 C ALA 103 1.421 11.693 -0.886 1.00 0.00 C ATOM 181 O ALA 103 1.337 10.475 -0.796 1.00 0.00 O ATOM 182 CB ALA 103 3.742 11.356 -1.640 1.00 0.00 C ATOM 183 N THR 104 0.562 12.546 -0.277 1.00 0.00 N ATOM 184 CA THR 104 -0.618 12.210 0.486 1.00 0.00 C ATOM 185 C THR 104 -1.362 10.935 0.137 1.00 0.00 C ATOM 186 O THR 104 -1.771 10.222 1.051 1.00 0.00 O ATOM 187 CB THR 104 -1.519 13.404 0.576 1.00 0.00 C ATOM 188 OG1 THR 104 -0.677 14.512 0.867 1.00 0.00 O ATOM 189 CG2 THR 104 -2.579 13.229 1.692 1.00 0.00 C ATOM 190 N ILE 105 -1.510 10.561 -1.149 1.00 0.00 N ATOM 191 CA ILE 105 -2.428 9.492 -1.461 1.00 0.00 C ATOM 192 C ILE 105 -1.658 8.252 -1.159 1.00 0.00 C ATOM 193 O ILE 105 -2.226 7.270 -0.706 1.00 0.00 O ATOM 194 CB ILE 105 -2.950 9.504 -2.877 1.00 0.00 C ATOM 195 CG1 ILE 105 -4.066 10.567 -2.940 1.00 0.00 C ATOM 196 CG2 ILE 105 -3.389 8.100 -3.376 1.00 0.00 C ATOM 197 CD1 ILE 105 -5.455 10.101 -2.484 1.00 0.00 C ATOM 198 N LYS 106 -0.329 8.318 -1.287 1.00 0.00 N ATOM 199 CA LYS 106 0.483 7.152 -1.204 1.00 0.00 C ATOM 200 C LYS 106 0.666 6.932 0.269 1.00 0.00 C ATOM 201 O LYS 106 0.961 5.815 0.679 1.00 0.00 O ATOM 202 CB LYS 106 1.890 7.294 -1.813 1.00 0.00 C ATOM 203 CG LYS 106 1.897 7.987 -3.183 1.00 0.00 C ATOM 204 CD LYS 106 3.297 8.218 -3.750 1.00 0.00 C ATOM 205 CE LYS 106 3.264 9.047 -5.045 1.00 0.00 C ATOM 206 NZ LYS 106 4.606 9.557 -5.417 1.00 0.00 N ATOM 207 N VAL 107 0.460 7.972 1.111 1.00 0.00 N ATOM 208 CA VAL 107 0.947 7.882 2.460 1.00 0.00 C ATOM 209 C VAL 107 -0.200 7.415 3.273 1.00 0.00 C ATOM 210 O VAL 107 -0.060 6.483 4.051 1.00 0.00 O ATOM 211 CB VAL 107 1.412 9.107 3.150 1.00 0.00 C ATOM 212 CG1 VAL 107 2.404 8.607 4.215 1.00 0.00 C ATOM 213 CG2 VAL 107 2.011 10.061 2.130 1.00 0.00 C ATOM 214 N LYS 108 -1.389 8.014 3.065 1.00 0.00 N ATOM 215 CA LYS 108 -2.656 7.371 3.291 1.00 0.00 C ATOM 216 C LYS 108 -2.648 5.963 2.832 1.00 0.00 C ATOM 217 O LYS 108 -3.255 5.100 3.464 1.00 0.00 O ATOM 218 CB LYS 108 -3.796 8.006 2.497 1.00 0.00 C ATOM 219 CG LYS 108 -4.385 9.214 3.211 1.00 0.00 C ATOM 220 CD LYS 108 -5.904 9.231 3.076 1.00 0.00 C ATOM 221 CE LYS 108 -6.627 9.946 4.213 1.00 0.00 C ATOM 222 NZ LYS 108 -7.982 9.369 4.373 1.00 0.00 N ATOM 223 N LYS 109 -1.930 5.698 1.736 1.00 0.00 N ATOM 224 CA LYS 109 -2.139 4.458 1.122 1.00 0.00 C ATOM 225 C LYS 109 -1.210 3.547 1.772 1.00 0.00 C ATOM 226 O LYS 109 -1.462 2.430 1.342 1.00 0.00 O ATOM 227 CB LYS 109 -1.852 4.228 -0.396 1.00 0.00 C ATOM 228 CG LYS 109 -3.066 3.635 -1.130 1.00 0.00 C ATOM 229 CD LYS 109 -2.874 2.243 -1.748 1.00 0.00 C ATOM 230 CE LYS 109 -4.226 1.538 -1.942 1.00 0.00 C ATOM 231 NZ LYS 109 -4.230 0.183 -1.340 1.00 0.00 N ATOM 232 N PHE 110 -0.190 4.001 2.652 1.00 0.00 N ATOM 233 CA PHE 110 0.668 3.403 3.733 1.00 0.00 C ATOM 234 C PHE 110 -0.055 3.202 5.059 1.00 0.00 C ATOM 235 O PHE 110 0.051 2.154 5.699 1.00 0.00 O ATOM 236 CB PHE 110 2.029 4.091 4.096 1.00 0.00 C ATOM 237 CG PHE 110 3.062 3.114 4.685 1.00 0.00 C ATOM 238 CD1 PHE 110 4.385 3.179 4.295 1.00 0.00 C ATOM 239 CD2 PHE 110 2.798 2.167 5.666 1.00 0.00 C ATOM 240 CE1 PHE 110 5.369 2.607 5.089 1.00 0.00 C ATOM 241 CE2 PHE 110 3.708 1.184 5.949 1.00 0.00 C ATOM 242 CZ PHE 110 5.001 1.588 5.933 1.00 0.00 C ATOM 243 N PHE 111 -0.811 4.179 5.546 1.00 0.00 N ATOM 244 CA PHE 111 -1.537 3.977 6.761 1.00 0.00 C ATOM 245 C PHE 111 -2.562 2.848 6.660 1.00 0.00 C ATOM 246 O PHE 111 -2.789 2.126 7.630 1.00 0.00 O ATOM 247 CB PHE 111 -2.170 5.319 7.144 1.00 0.00 C ATOM 248 CG PHE 111 -2.235 5.650 8.602 1.00 0.00 C ATOM 249 CD1 PHE 111 -2.828 6.860 8.891 1.00 0.00 C ATOM 250 CD2 PHE 111 -1.527 5.026 9.611 1.00 0.00 C ATOM 251 CE1 PHE 111 -3.240 7.141 10.178 1.00 0.00 C ATOM 252 CE2 PHE 111 -1.632 5.541 10.873 1.00 0.00 C ATOM 253 CZ PHE 111 -2.678 6.360 11.161 1.00 0.00 C ATOM 254 N ASP 112 -3.168 2.606 5.480 1.00 0.00 N ATOM 255 CA ASP 112 -4.392 1.839 5.413 1.00 0.00 C ATOM 256 C ASP 112 -4.120 0.352 5.460 1.00 0.00 C ATOM 257 O ASP 112 -5.032 -0.427 5.689 1.00 0.00 O ATOM 258 CB ASP 112 -5.215 2.089 4.133 1.00 0.00 C ATOM 259 CG ASP 112 -6.396 3.005 4.451 1.00 0.00 C ATOM 260 OD1 ASP 112 -6.270 4.242 4.234 1.00 0.00 O ATOM 261 OD2 ASP 112 -7.463 2.470 4.861 1.00 0.00 O ATOM 262 N LEU 113 -2.857 -0.078 5.317 1.00 0.00 N ATOM 263 CA LEU 113 -2.320 -1.261 4.634 1.00 0.00 C ATOM 264 C LEU 113 -1.584 -1.711 5.808 1.00 0.00 C ATOM 265 O LEU 113 -1.641 -2.883 6.082 1.00 0.00 O ATOM 266 CB LEU 113 -1.166 -1.386 3.513 1.00 0.00 C ATOM 267 CG LEU 113 -0.136 -0.267 3.376 1.00 0.00 C ATOM 268 CD1 LEU 113 0.766 -0.072 2.102 1.00 0.00 C ATOM 269 CD2 LEU 113 -1.084 0.802 3.346 1.00 0.00 C ATOM 270 N ALA 114 -0.873 -0.827 6.548 1.00 0.00 N ATOM 271 CA ALA 114 -0.548 -1.126 7.912 1.00 0.00 C ATOM 272 C ALA 114 -1.752 -1.578 8.655 1.00 0.00 C ATOM 273 O ALA 114 -1.775 -2.725 9.075 1.00 0.00 O ATOM 274 CB ALA 114 0.090 0.020 8.702 1.00 0.00 C ATOM 275 N GLN 115 -2.771 -0.715 8.837 1.00 0.00 N ATOM 276 CA GLN 115 -3.929 -1.080 9.600 1.00 0.00 C ATOM 277 C GLN 115 -4.586 -2.286 9.070 1.00 0.00 C ATOM 278 O GLN 115 -5.056 -3.078 9.879 1.00 0.00 O ATOM 279 CB GLN 115 -5.027 -0.020 9.591 1.00 0.00 C ATOM 280 CG GLN 115 -4.629 1.186 10.436 1.00 0.00 C ATOM 281 CD GLN 115 -5.640 2.284 10.178 1.00 0.00 C ATOM 282 OE1 GLN 115 -6.186 2.403 9.081 1.00 0.00 O ATOM 283 NE2 GLN 115 -5.918 3.095 11.232 1.00 0.00 N ATOM 284 N LYS 116 -4.614 -2.439 7.734 1.00 0.00 N ATOM 285 CA LYS 116 -5.412 -3.473 7.175 1.00 0.00 C ATOM 286 C LYS 116 -4.510 -4.588 7.563 1.00 0.00 C ATOM 287 O LYS 116 -4.908 -5.369 8.406 1.00 0.00 O ATOM 288 CB LYS 116 -5.815 -3.382 5.676 1.00 0.00 C ATOM 289 CG LYS 116 -7.141 -2.594 5.500 1.00 0.00 C ATOM 290 CD LYS 116 -7.443 -2.100 4.076 1.00 0.00 C ATOM 291 CE LYS 116 -8.491 -0.969 4.040 1.00 0.00 C ATOM 292 NZ LYS 116 -8.812 -0.559 2.650 1.00 0.00 N ATOM 293 N ALA 117 -3.261 -4.657 7.102 1.00 0.00 N ATOM 294 CA ALA 117 -2.524 -5.892 7.003 1.00 0.00 C ATOM 295 C ALA 117 -2.265 -6.436 8.364 1.00 0.00 C ATOM 296 O ALA 117 -2.093 -7.635 8.524 1.00 0.00 O ATOM 297 CB ALA 117 -1.135 -5.807 6.344 1.00 0.00 C ATOM 298 N LEU 118 -2.267 -5.576 9.386 1.00 0.00 N ATOM 299 CA LEU 118 -1.772 -5.969 10.663 1.00 0.00 C ATOM 300 C LEU 118 -2.917 -6.574 11.399 1.00 0.00 C ATOM 301 O LEU 118 -2.704 -7.478 12.200 1.00 0.00 O ATOM 302 CB LEU 118 -1.257 -4.806 11.513 1.00 0.00 C ATOM 303 CG LEU 118 0.163 -4.338 11.135 1.00 0.00 C ATOM 304 CD1 LEU 118 0.498 -3.018 11.852 1.00 0.00 C ATOM 305 CD2 LEU 118 1.222 -5.433 11.379 1.00 0.00 C ATOM 306 N LYS 119 -4.155 -6.089 11.139 1.00 0.00 N ATOM 307 CA LYS 119 -5.374 -6.713 11.582 1.00 0.00 C ATOM 308 C LYS 119 -5.410 -8.216 11.406 1.00 0.00 C ATOM 309 O LYS 119 -5.980 -8.846 12.291 1.00 0.00 O ATOM 310 CB LYS 119 -6.671 -6.137 10.951 1.00 0.00 C ATOM 311 CG LYS 119 -7.158 -4.769 11.480 1.00 0.00 C ATOM 312 CD LYS 119 -7.983 -3.976 10.448 1.00 0.00 C ATOM 313 CE LYS 119 -8.429 -2.577 10.886 1.00 0.00 C ATOM 314 NZ LYS 119 -9.275 -1.938 9.842 1.00 0.00 N ATOM 315 N ASP 120 -4.833 -8.830 10.335 1.00 0.00 N ATOM 316 CA ASP 120 -4.957 -10.272 10.142 1.00 0.00 C ATOM 317 C ASP 120 -4.330 -10.618 8.819 1.00 0.00 C ATOM 318 O ASP 120 -3.672 -9.791 8.201 1.00 0.00 O ATOM 319 CB ASP 120 -6.385 -10.913 10.226 1.00 0.00 C ATOM 320 CG ASP 120 -7.320 -10.209 9.271 1.00 0.00 C ATOM 321 OD1 ASP 120 -7.085 -10.378 8.057 1.00 0.00 O ATOM 322 OD2 ASP 120 -8.262 -9.480 9.684 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 205 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 65.42 57.7 52 21.3 244 ARMSMC SECONDARY STRUCTURE . . 22.99 80.0 20 18.5 108 ARMSMC SURFACE . . . . . . . . 63.96 50.0 24 16.2 148 ARMSMC BURIED . . . . . . . . 66.64 64.3 28 29.2 96 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.15 38.1 21 21.0 100 ARMSSC1 RELIABLE SIDE CHAINS . 75.52 40.0 20 21.7 92 ARMSSC1 SECONDARY STRUCTURE . . 60.23 37.5 8 16.7 48 ARMSSC1 SURFACE . . . . . . . . 86.12 36.4 11 17.5 63 ARMSSC1 BURIED . . . . . . . . 58.20 40.0 10 27.0 37 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.79 29.4 17 21.0 81 ARMSSC2 RELIABLE SIDE CHAINS . 70.15 35.7 14 20.0 70 ARMSSC2 SECONDARY STRUCTURE . . 81.41 37.5 8 22.2 36 ARMSSC2 SURFACE . . . . . . . . 57.96 44.4 9 16.7 54 ARMSSC2 BURIED . . . . . . . . 97.02 12.5 8 29.6 27 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.50 33.3 6 17.6 34 ARMSSC3 RELIABLE SIDE CHAINS . 75.35 40.0 5 16.7 30 ARMSSC3 SECONDARY STRUCTURE . . 103.24 0.0 4 25.0 16 ARMSSC3 SURFACE . . . . . . . . 92.63 25.0 4 14.3 28 ARMSSC3 BURIED . . . . . . . . 65.28 50.0 2 33.3 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 108.02 40.0 5 27.8 18 ARMSSC4 RELIABLE SIDE CHAINS . 108.02 40.0 5 27.8 18 ARMSSC4 SECONDARY STRUCTURE . . 98.49 66.7 3 30.0 10 ARMSSC4 SURFACE . . . . . . . . 67.61 66.7 3 21.4 14 ARMSSC4 BURIED . . . . . . . . 149.38 0.0 2 50.0 4 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.02 (Number of atoms: 27) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.02 27 22.0 123 CRMSCA CRN = ALL/NP . . . . . 0.1860 CRMSCA SECONDARY STRUCTURE . . 3.79 10 18.5 54 CRMSCA SURFACE . . . . . . . . 5.16 13 17.3 75 CRMSCA BURIED . . . . . . . . 4.90 14 29.2 48 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.07 133 22.0 604 CRMSMC SECONDARY STRUCTURE . . 3.87 50 18.5 270 CRMSMC SURFACE . . . . . . . . 5.25 64 17.5 366 CRMSMC BURIED . . . . . . . . 4.90 69 29.0 238 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.33 97 6.9 1399 CRMSSC RELIABLE SIDE CHAINS . 7.16 85 6.3 1349 CRMSSC SECONDARY STRUCTURE . . 6.66 44 6.4 687 CRMSSC SURFACE . . . . . . . . 7.53 48 5.8 834 CRMSSC BURIED . . . . . . . . 7.13 49 8.7 565 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.18 205 10.8 1891 CRMSALL SECONDARY STRUCTURE . . 5.42 84 9.3 903 CRMSALL SURFACE . . . . . . . . 6.34 100 8.8 1134 CRMSALL BURIED . . . . . . . . 6.02 105 13.9 757 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.574 1.000 0.500 27 22.0 123 ERRCA SECONDARY STRUCTURE . . 3.631 1.000 0.500 10 18.5 54 ERRCA SURFACE . . . . . . . . 4.769 1.000 0.500 13 17.3 75 ERRCA BURIED . . . . . . . . 4.392 1.000 0.500 14 29.2 48 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.610 1.000 0.500 133 22.0 604 ERRMC SECONDARY STRUCTURE . . 3.670 1.000 0.500 50 18.5 270 ERRMC SURFACE . . . . . . . . 4.803 1.000 0.500 64 17.5 366 ERRMC BURIED . . . . . . . . 4.432 1.000 0.500 69 29.0 238 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.600 1.000 0.500 97 6.9 1399 ERRSC RELIABLE SIDE CHAINS . 6.424 1.000 0.500 85 6.3 1349 ERRSC SECONDARY STRUCTURE . . 6.387 1.000 0.500 44 6.4 687 ERRSC SURFACE . . . . . . . . 6.950 1.000 0.500 48 5.8 834 ERRSC BURIED . . . . . . . . 6.256 1.000 0.500 49 8.7 565 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.492 1.000 0.500 205 10.8 1891 ERRALL SECONDARY STRUCTURE . . 4.979 1.000 0.500 84 9.3 903 ERRALL SURFACE . . . . . . . . 5.729 1.000 0.500 100 8.8 1134 ERRALL BURIED . . . . . . . . 5.266 1.000 0.500 105 13.9 757 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 5 18 27 27 123 DISTCA CA (P) 0.00 0.81 4.07 14.63 21.95 123 DISTCA CA (RMS) 0.00 1.72 2.55 3.48 5.02 DISTCA ALL (N) 0 5 34 110 192 205 1891 DISTALL ALL (P) 0.00 0.26 1.80 5.82 10.15 1891 DISTALL ALL (RMS) 0.00 1.82 2.45 3.61 5.41 DISTALL END of the results output