####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 23 ( 208), selected 23 , name T0561TS296_1-D1 # Molecule2: number of CA atoms 151 ( 1248), selected 23 , name T0561-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0561TS296_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 137 - 159 2.26 2.26 LCS_AVERAGE: 15.23 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 137 - 158 1.97 2.29 LONGEST_CONTINUOUS_SEGMENT: 22 138 - 159 1.91 2.32 LCS_AVERAGE: 14.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 140 - 158 1.00 2.65 LCS_AVERAGE: 11.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 23 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 137 M 137 5 22 23 4 4 5 8 9 12 15 16 19 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT P 138 P 138 11 22 23 4 4 11 14 15 18 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT P 139 P 139 18 22 23 8 14 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 140 E 140 19 22 23 8 14 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 141 E 141 19 22 23 5 14 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT K 142 K 142 19 22 23 8 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT K 143 K 143 19 22 23 8 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 144 R 144 19 22 23 8 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 145 R 145 19 22 23 8 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT M 146 M 146 19 22 23 8 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 147 E 147 19 22 23 9 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 148 R 148 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT K 149 K 149 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT Q 150 Q 150 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 151 R 151 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT I 152 I 152 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 153 E 153 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 154 E 154 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT A 155 A 155 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 156 R 156 19 22 23 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 157 R 157 19 22 23 11 15 17 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT H 158 H 158 19 22 23 11 15 17 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 LCS_GDT G 159 G 159 3 22 23 3 3 3 3 3 4 5 6 8 15 23 23 23 23 23 23 23 23 23 23 LCS_AVERAGE LCS_A: 13.75 ( 11.46 14.57 15.23 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 15 18 20 20 20 21 21 21 21 23 23 23 23 23 23 23 23 23 23 GDT PERCENT_AT 7.28 9.93 11.92 13.25 13.25 13.25 13.91 13.91 13.91 13.91 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 GDT RMS_LOCAL 0.34 0.60 0.97 1.07 1.07 1.07 1.49 1.49 1.49 1.49 2.26 2.26 2.26 2.26 2.26 2.26 2.26 2.26 2.26 2.26 GDT RMS_ALL_AT 4.16 3.34 2.48 2.55 2.55 2.55 2.36 2.36 2.36 2.36 2.26 2.26 2.26 2.26 2.26 2.26 2.26 2.26 2.26 2.26 # Checking swapping # possible swapping detected: E 154 E 154 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 137 M 137 6.744 0 0.263 0.779 9.982 17.738 13.571 LGA P 138 P 138 4.391 0 0.187 0.443 5.780 44.405 36.667 LGA P 139 P 139 1.099 0 0.196 0.228 3.368 81.786 70.272 LGA E 140 E 140 1.052 0 0.110 1.190 7.713 85.952 57.143 LGA E 141 E 141 0.820 0 0.024 1.230 6.267 90.476 61.270 LGA K 142 K 142 0.604 0 0.062 0.818 4.781 90.595 72.540 LGA K 143 K 143 0.929 0 0.037 1.010 4.382 83.810 71.270 LGA R 144 R 144 1.156 0 0.043 1.198 6.250 81.429 63.247 LGA R 145 R 145 1.151 0 0.057 1.346 6.514 81.429 56.537 LGA M 146 M 146 1.247 0 0.047 0.767 2.341 81.429 79.345 LGA E 147 E 147 1.454 0 0.048 0.377 1.884 77.143 78.571 LGA R 148 R 148 1.452 0 0.065 1.513 8.160 79.286 56.017 LGA K 149 K 149 1.395 0 0.035 0.788 4.730 81.429 63.810 LGA Q 150 Q 150 1.228 0 0.052 1.077 4.493 83.690 69.101 LGA R 151 R 151 1.116 0 0.040 1.251 7.263 88.333 59.351 LGA I 152 I 152 0.741 0 0.053 0.145 1.833 90.476 83.810 LGA E 153 E 153 0.557 0 0.046 0.152 1.118 90.476 90.529 LGA E 154 E 154 0.714 0 0.047 0.929 3.002 90.476 77.407 LGA A 155 A 155 0.819 0 0.034 0.040 1.290 85.952 86.857 LGA R 156 R 156 1.276 0 0.043 1.437 7.219 79.286 59.091 LGA R 157 R 157 1.595 0 0.357 0.661 4.425 81.548 62.554 LGA H 158 H 158 1.939 0 0.505 1.049 10.558 69.048 34.857 LGA G 159 G 159 6.012 0 0.690 0.690 7.047 20.952 20.952 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 23 92 92 100.00 204 204 100.00 151 SUMMARY(RMSD_GDC): 2.264 2.187 3.424 11.637 9.436 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 23 151 4.0 21 1.49 13.079 13.742 1.321 LGA_LOCAL RMSD: 1.490 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.361 Number of assigned atoms: 23 Std_ASGN_ATOMS RMSD: 2.264 Standard rmsd on all 23 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.021849 * X + 0.993494 * Y + 0.111767 * Z + -18.575974 Y_new = 0.836824 * X + -0.079343 * Y + 0.541692 * Z + 61.233463 Z_new = 0.547036 * X + 0.081694 * Y + -0.833113 * Z + 26.023739 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.544693 -0.578820 3.043846 [DEG: 88.5044 -33.1639 174.3995 ] ZXZ: 2.938118 2.555509 1.422552 [DEG: 168.3418 146.4199 81.5062 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0561TS296_1-D1 REMARK 2: T0561-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0561TS296_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 23 151 4.0 21 1.49 13.742 2.26 REMARK ---------------------------------------------------------- MOLECULE T0561TS296_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0561 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N MET 137 -5.929 50.257 6.638 1.00 1.00 N ATOM 2 CA MET 137 -6.863 51.114 7.402 1.00 1.00 C ATOM 3 C MET 137 -6.168 52.331 7.905 1.00 1.00 C ATOM 4 O MET 137 -4.955 52.346 8.102 1.00 1.00 O ATOM 5 H1 MET 137 -6.219 49.486 6.275 1.00 1.00 H ATOM 6 H2 MET 137 -5.195 49.923 7.038 1.00 1.00 H ATOM 7 H3 MET 137 -5.521 50.579 5.904 1.00 1.00 H ATOM 8 CB MET 137 -7.478 50.334 8.565 1.00 1.00 C ATOM 9 SD MET 137 -9.187 48.381 9.538 1.00 1.00 S ATOM 10 CE MET 137 -10.311 47.270 8.696 1.00 1.00 C ATOM 11 CG MET 137 -8.443 49.240 8.138 1.00 1.00 C ATOM 12 N PRO 138 -6.934 53.364 8.095 1.00 1.00 N ATOM 13 CA PRO 138 -6.348 54.577 8.586 1.00 1.00 C ATOM 14 C PRO 138 -6.023 54.469 10.036 1.00 1.00 C ATOM 15 O PRO 138 -6.691 53.733 10.762 1.00 1.00 O ATOM 16 CB PRO 138 -7.422 55.637 8.329 1.00 1.00 C ATOM 17 CD PRO 138 -8.390 53.528 7.743 1.00 1.00 C ATOM 18 CG PRO 138 -8.705 54.876 8.328 1.00 1.00 C ATOM 19 N PRO 139 -5.003 55.163 10.440 1.00 1.00 N ATOM 20 CA PRO 139 -4.622 55.189 11.824 1.00 1.00 C ATOM 21 C PRO 139 -5.631 55.973 12.595 1.00 1.00 C ATOM 22 O PRO 139 -5.615 55.934 13.823 1.00 1.00 O ATOM 23 CB PRO 139 -3.246 55.858 11.817 1.00 1.00 C ATOM 24 CD PRO 139 -4.058 55.975 9.569 1.00 1.00 C ATOM 25 CG PRO 139 -3.256 56.719 10.598 1.00 1.00 C ATOM 26 N GLU 140 -6.510 56.697 11.881 1.00 1.00 N ATOM 27 CA GLU 140 -7.497 57.553 12.469 1.00 1.00 C ATOM 28 C GLU 140 -8.417 56.716 13.296 1.00 1.00 C ATOM 29 O GLU 140 -8.837 57.124 14.378 1.00 1.00 O ATOM 31 CB GLU 140 -8.257 58.317 11.384 1.00 1.00 C ATOM 32 CD GLU 140 -6.990 60.492 11.593 1.00 1.00 C ATOM 33 CG GLU 140 -7.428 59.372 10.670 1.00 1.00 C ATOM 34 OE1 GLU 140 -7.857 61.069 12.281 1.00 1.00 O ATOM 35 OE2 GLU 140 -5.778 60.793 11.627 1.00 1.00 O ATOM 36 N GLU 141 -8.741 55.506 12.807 1.00 1.00 N ATOM 37 CA GLU 141 -9.665 54.641 13.485 1.00 1.00 C ATOM 38 C GLU 141 -9.115 54.288 14.825 1.00 1.00 C ATOM 39 O GLU 141 -9.839 54.260 15.819 1.00 1.00 O ATOM 41 CB GLU 141 -9.934 53.386 12.652 1.00 1.00 C ATOM 42 CD GLU 141 -10.929 52.389 10.556 1.00 1.00 C ATOM 43 CG GLU 141 -10.748 53.639 11.394 1.00 1.00 C ATOM 44 OE1 GLU 141 -10.266 51.373 10.854 1.00 1.00 O ATOM 45 OE2 GLU 141 -11.734 52.425 9.601 1.00 1.00 O ATOM 46 N LYS 142 -7.806 54.006 14.888 1.00 1.00 N ATOM 47 CA LYS 142 -7.204 53.622 16.128 1.00 1.00 C ATOM 48 C LYS 142 -7.282 54.769 17.087 1.00 1.00 C ATOM 49 O LYS 142 -7.461 54.569 18.287 1.00 1.00 O ATOM 51 CB LYS 142 -5.755 53.184 15.908 1.00 1.00 C ATOM 52 CD LYS 142 -4.149 51.492 14.983 1.00 1.00 C ATOM 53 CE LYS 142 -4.004 50.165 14.257 1.00 1.00 C ATOM 54 CG LYS 142 -5.610 51.863 15.171 1.00 1.00 C ATOM 58 NZ LYS 142 -2.577 49.809 14.030 1.00 1.00 N ATOM 59 N LYS 143 -7.175 56.004 16.568 1.00 1.00 N ATOM 60 CA LYS 143 -7.129 57.187 17.379 1.00 1.00 C ATOM 61 C LYS 143 -8.379 57.316 18.200 1.00 1.00 C ATOM 62 O LYS 143 -8.311 57.698 19.367 1.00 1.00 O ATOM 64 CB LYS 143 -6.936 58.428 16.506 1.00 1.00 C ATOM 65 CD LYS 143 -5.438 59.783 15.016 1.00 1.00 C ATOM 66 CE LYS 143 -4.061 59.889 14.383 1.00 1.00 C ATOM 67 CG LYS 143 -5.555 58.541 15.885 1.00 1.00 C ATOM 71 NZ LYS 143 -3.948 61.079 13.495 1.00 1.00 N ATOM 72 N ARG 144 -9.554 56.986 17.635 1.00 1.00 N ATOM 73 CA ARG 144 -10.780 57.172 18.360 1.00 1.00 C ATOM 74 C ARG 144 -10.782 56.347 19.609 1.00 1.00 C ATOM 75 O ARG 144 -11.276 56.792 20.645 1.00 1.00 O ATOM 77 CB ARG 144 -11.981 56.813 17.482 1.00 1.00 C ATOM 78 CD ARG 144 -13.613 57.567 15.730 1.00 1.00 C ATOM 80 NE ARG 144 -13.693 56.257 15.089 1.00 1.00 N ATOM 81 CG ARG 144 -12.254 57.808 16.366 1.00 1.00 C ATOM 82 CZ ARG 144 -13.334 56.017 13.831 1.00 1.00 C ATOM 85 NH1 ARG 144 -13.441 54.794 13.333 1.00 1.00 H ATOM 88 NH2 ARG 144 -12.869 57.003 13.076 1.00 1.00 H ATOM 89 N ARG 145 -10.225 55.124 19.568 1.00 1.00 N ATOM 90 CA ARG 145 -10.221 54.328 20.767 1.00 1.00 C ATOM 91 C ARG 145 -9.456 55.049 21.830 1.00 1.00 C ATOM 92 O ARG 145 -9.894 55.124 22.977 1.00 1.00 O ATOM 94 CB ARG 145 -9.619 52.949 20.492 1.00 1.00 C ATOM 95 CD ARG 145 -9.998 50.607 19.669 1.00 1.00 C ATOM 97 NE ARG 145 -8.669 50.488 19.075 1.00 1.00 N ATOM 98 CG ARG 145 -10.503 52.041 19.651 1.00 1.00 C ATOM 99 CZ ARG 145 -8.446 50.293 17.779 1.00 1.00 C ATOM 102 NH1 ARG 145 -7.202 50.197 17.328 1.00 1.00 H ATOM 105 NH2 ARG 145 -9.465 50.196 16.937 1.00 1.00 H ATOM 106 N MET 146 -8.296 55.622 21.468 1.00 1.00 N ATOM 107 CA MET 146 -7.478 56.277 22.439 1.00 1.00 C ATOM 108 C MET 146 -8.243 57.428 23.001 1.00 1.00 C ATOM 109 O MET 146 -8.187 57.686 24.201 1.00 1.00 O ATOM 111 CB MET 146 -6.160 56.733 21.810 1.00 1.00 C ATOM 112 SD MET 146 -3.758 56.161 20.553 1.00 1.00 S ATOM 113 CE MET 146 -2.892 57.029 21.858 1.00 1.00 C ATOM 114 CG MET 146 -5.226 55.594 21.434 1.00 1.00 C ATOM 115 N GLU 147 -8.977 58.157 22.137 1.00 1.00 N ATOM 116 CA GLU 147 -9.728 59.296 22.574 1.00 1.00 C ATOM 117 C GLU 147 -10.830 58.857 23.489 1.00 1.00 C ATOM 118 O GLU 147 -11.116 59.531 24.478 1.00 1.00 O ATOM 120 CB GLU 147 -10.291 60.059 21.372 1.00 1.00 C ATOM 121 CD GLU 147 -9.824 61.456 19.321 1.00 1.00 C ATOM 122 CG GLU 147 -9.236 60.762 20.534 1.00 1.00 C ATOM 123 OE1 GLU 147 -11.017 61.231 19.028 1.00 1.00 O ATOM 124 OE2 GLU 147 -9.091 62.224 18.663 1.00 1.00 O ATOM 125 N ARG 148 -11.486 57.718 23.192 1.00 1.00 N ATOM 126 CA ARG 148 -12.591 57.314 24.020 1.00 1.00 C ATOM 127 C ARG 148 -12.106 57.090 25.415 1.00 1.00 C ATOM 128 O ARG 148 -12.706 57.572 26.375 1.00 1.00 O ATOM 130 CB ARG 148 -13.250 56.053 23.457 1.00 1.00 C ATOM 131 CD ARG 148 -14.987 54.258 23.708 1.00 1.00 C ATOM 133 NE ARG 148 -14.014 53.175 23.832 1.00 1.00 N ATOM 134 CG ARG 148 -14.451 55.571 24.255 1.00 1.00 C ATOM 135 CZ ARG 148 -13.758 52.527 24.963 1.00 1.00 C ATOM 138 NH1 ARG 148 -12.855 51.555 24.980 1.00 1.00 H ATOM 141 NH2 ARG 148 -14.405 52.851 26.074 1.00 1.00 H ATOM 142 N LYS 149 -10.987 56.357 25.563 1.00 1.00 N ATOM 143 CA LYS 149 -10.472 56.072 26.871 1.00 1.00 C ATOM 144 C LYS 149 -10.034 57.350 27.516 1.00 1.00 C ATOM 145 O LYS 149 -10.207 57.542 28.716 1.00 1.00 O ATOM 147 CB LYS 149 -9.316 55.073 26.786 1.00 1.00 C ATOM 148 CD LYS 149 -8.543 52.731 26.318 1.00 1.00 C ATOM 149 CE LYS 149 -8.967 51.324 25.931 1.00 1.00 C ATOM 150 CG LYS 149 -9.739 53.666 26.396 1.00 1.00 C ATOM 154 NZ LYS 149 -7.800 50.407 25.809 1.00 1.00 N ATOM 155 N GLN 150 -9.445 58.263 26.730 1.00 1.00 N ATOM 156 CA GLN 150 -8.980 59.513 27.254 1.00 1.00 C ATOM 157 C GLN 150 -10.169 60.272 27.739 1.00 1.00 C ATOM 158 O GLN 150 -10.099 60.990 28.734 1.00 1.00 O ATOM 160 CB GLN 150 -8.206 60.287 26.185 1.00 1.00 C ATOM 161 CD GLN 150 -6.506 61.343 27.726 1.00 1.00 C ATOM 162 CG GLN 150 -7.581 61.579 26.684 1.00 1.00 C ATOM 163 OE1 GLN 150 -5.561 60.589 27.496 1.00 1.00 O ATOM 166 NE2 GLN 150 -6.648 61.988 28.878 1.00 1.00 N ATOM 167 N ARG 151 -11.301 60.129 27.030 1.00 1.00 N ATOM 168 CA ARG 151 -12.489 60.851 27.364 1.00 1.00 C ATOM 169 C ARG 151 -12.900 60.495 28.756 1.00 1.00 C ATOM 170 O ARG 151 -13.271 61.366 29.539 1.00 1.00 O ATOM 172 CB ARG 151 -13.603 60.542 26.361 1.00 1.00 C ATOM 173 CD ARG 151 -15.912 61.042 25.516 1.00 1.00 C ATOM 175 NE ARG 151 -17.181 61.721 25.773 1.00 1.00 N ATOM 176 CG ARG 151 -14.893 61.306 26.612 1.00 1.00 C ATOM 177 CZ ARG 151 -18.239 61.655 24.971 1.00 1.00 C ATOM 180 NH1 ARG 151 -19.351 62.306 25.286 1.00 1.00 H ATOM 183 NH2 ARG 151 -18.184 60.938 23.857 1.00 1.00 H ATOM 184 N ILE 152 -12.845 59.200 29.118 1.00 1.00 N ATOM 185 CA ILE 152 -13.273 58.849 30.436 1.00 1.00 C ATOM 186 C ILE 152 -12.362 59.493 31.433 1.00 1.00 C ATOM 187 O ILE 152 -12.816 60.005 32.453 1.00 1.00 O ATOM 189 CB ILE 152 -13.311 57.321 30.630 1.00 1.00 C ATOM 190 CD1 ILE 152 -14.352 55.195 29.684 1.00 1.00 C ATOM 191 CG1 ILE 152 -14.421 56.704 29.777 1.00 1.00 C ATOM 192 CG2 ILE 152 -13.468 56.974 32.102 1.00 1.00 C ATOM 193 N GLU 153 -11.046 59.498 31.156 1.00 1.00 N ATOM 194 CA GLU 153 -10.092 60.035 32.085 1.00 1.00 C ATOM 195 C GLU 153 -10.366 61.488 32.314 1.00 1.00 C ATOM 196 O GLU 153 -10.287 61.963 33.446 1.00 1.00 O ATOM 198 CB GLU 153 -8.666 59.827 31.570 1.00 1.00 C ATOM 199 CD GLU 153 -6.820 58.201 30.999 1.00 1.00 C ATOM 200 CG GLU 153 -8.206 58.378 31.588 1.00 1.00 C ATOM 201 OE1 GLU 153 -6.297 59.169 30.408 1.00 1.00 O ATOM 202 OE2 GLU 153 -6.255 57.095 31.130 1.00 1.00 O ATOM 203 N GLU 154 -10.706 62.239 31.251 1.00 1.00 N ATOM 204 CA GLU 154 -10.882 63.652 31.430 1.00 1.00 C ATOM 205 C GLU 154 -11.984 63.863 32.412 1.00 1.00 C ATOM 206 O GLU 154 -11.890 64.725 33.284 1.00 1.00 O ATOM 208 CB GLU 154 -11.182 64.328 30.090 1.00 1.00 C ATOM 209 CD GLU 154 -11.545 66.482 28.823 1.00 1.00 C ATOM 210 CG GLU 154 -11.326 65.839 30.177 1.00 1.00 C ATOM 211 OE1 GLU 154 -11.603 65.744 27.817 1.00 1.00 O ATOM 212 OE2 GLU 154 -11.659 67.725 28.766 1.00 1.00 O ATOM 213 N ALA 155 -13.065 63.069 32.306 1.00 1.00 N ATOM 214 CA ALA 155 -14.167 63.230 33.203 1.00 1.00 C ATOM 215 C ALA 155 -13.679 62.952 34.586 1.00 1.00 C ATOM 216 O ALA 155 -14.008 63.669 35.531 1.00 1.00 O ATOM 218 CB ALA 155 -15.310 62.307 32.811 1.00 1.00 C ATOM 219 N ARG 156 -12.853 61.901 34.733 1.00 1.00 N ATOM 220 CA ARG 156 -12.365 61.517 36.023 1.00 1.00 C ATOM 221 C ARG 156 -11.536 62.634 36.564 1.00 1.00 C ATOM 222 O ARG 156 -11.636 62.984 37.740 1.00 1.00 O ATOM 224 CB ARG 156 -11.563 60.217 35.928 1.00 1.00 C ATOM 225 CD ARG 156 -11.543 57.745 35.497 1.00 1.00 C ATOM 227 NE ARG 156 -12.342 56.549 35.237 1.00 1.00 N ATOM 228 CG ARG 156 -12.408 58.985 35.647 1.00 1.00 C ATOM 229 CZ ARG 156 -11.832 55.370 34.897 1.00 1.00 C ATOM 232 NH1 ARG 156 -12.636 54.338 34.679 1.00 1.00 H ATOM 235 NH2 ARG 156 -10.519 55.226 34.775 1.00 1.00 H ATOM 236 N ARG 157 -10.704 63.240 35.698 1.00 1.00 N ATOM 237 CA ARG 157 -9.788 64.253 36.133 1.00 1.00 C ATOM 238 C ARG 157 -10.545 65.409 36.695 1.00 1.00 C ATOM 239 O ARG 157 -10.187 65.933 37.749 1.00 1.00 O ATOM 241 CB ARG 157 -8.894 64.700 34.975 1.00 1.00 C ATOM 242 CD ARG 157 -6.825 64.271 33.620 1.00 1.00 C ATOM 244 NE ARG 157 -7.418 64.741 32.370 1.00 1.00 N ATOM 245 CG ARG 157 -7.864 63.666 34.550 1.00 1.00 C ATOM 246 CZ ARG 157 -7.587 63.982 31.291 1.00 1.00 C ATOM 249 NH1 ARG 157 -8.134 64.496 30.199 1.00 1.00 H ATOM 252 NH2 ARG 157 -7.206 62.712 31.309 1.00 1.00 H ATOM 253 N HIS 158 -11.630 65.835 36.022 1.00 1.00 N ATOM 254 CA HIS 158 -12.340 66.969 36.532 1.00 1.00 C ATOM 255 C HIS 158 -12.989 66.610 37.820 1.00 1.00 C ATOM 256 O HIS 158 -13.371 65.464 38.052 1.00 1.00 O ATOM 258 CB HIS 158 -13.375 67.454 35.515 1.00 1.00 C ATOM 259 CG HIS 158 -12.774 68.038 34.274 1.00 1.00 C ATOM 260 ND1 HIS 158 -11.981 69.165 34.290 1.00 1.00 N ATOM 261 CE1 HIS 158 -11.593 69.445 33.033 1.00 1.00 C ATOM 262 CD2 HIS 158 -12.793 67.708 32.856 1.00 1.00 C ATOM 264 NE2 HIS 158 -12.076 68.574 32.168 1.00 1.00 N ATOM 265 N GLY 159 -13.098 67.613 38.711 1.00 1.00 N ATOM 266 CA GLY 159 -13.700 67.425 39.990 1.00 1.00 C ATOM 267 C GLY 159 -13.570 68.765 40.701 1.00 1.00 C ATOM 268 O GLY 159 -13.053 69.717 40.058 1.00 1.00 O ATOM 270 OXT GLY 159 -13.987 68.836 41.889 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 204 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 42.46 83.3 24 8.1 297 ARMSMC SECONDARY STRUCTURE . . 47.66 78.9 19 9.7 195 ARMSMC SURFACE . . . . . . . . 42.46 83.3 24 13.3 181 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 116 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.67 54.5 11 8.6 128 ARMSSC1 RELIABLE SIDE CHAINS . 78.67 54.5 11 9.2 120 ARMSSC1 SECONDARY STRUCTURE . . 83.31 50.0 8 9.9 81 ARMSSC1 SURFACE . . . . . . . . 78.67 54.5 11 14.1 78 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.50 72.7 11 10.0 110 ARMSSC2 RELIABLE SIDE CHAINS . 66.50 72.7 11 13.6 81 ARMSSC2 SECONDARY STRUCTURE . . 64.58 75.0 8 11.3 71 ARMSSC2 SURFACE . . . . . . . . 66.50 72.7 11 15.9 69 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.79 28.6 7 14.0 50 ARMSSC3 RELIABLE SIDE CHAINS . 97.79 28.6 7 16.3 43 ARMSSC3 SECONDARY STRUCTURE . . 104.38 33.3 6 18.2 33 ARMSSC3 SURFACE . . . . . . . . 97.79 28.6 7 19.4 36 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.26 (Number of atoms: 23) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.26 23 15.2 151 CRMSCA CRN = ALL/NP . . . . . 0.0984 CRMSCA SECONDARY STRUCTURE . . 1.33 17 17.2 99 CRMSCA SURFACE . . . . . . . . 2.37 19 20.7 92 CRMSCA BURIED . . . . . . . . 1.66 4 6.8 59 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.20 114 15.2 750 CRMSMC SECONDARY STRUCTURE . . 1.38 85 17.3 492 CRMSMC SURFACE . . . . . . . . 2.29 94 20.6 456 CRMSMC BURIED . . . . . . . . 1.69 20 6.8 294 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.29 112 17.4 644 CRMSSC RELIABLE SIDE CHAINS . 3.90 106 19.4 546 CRMSSC SECONDARY STRUCTURE . . 3.64 89 20.7 429 CRMSSC SURFACE . . . . . . . . 4.44 93 24.7 377 CRMSSC BURIED . . . . . . . . 3.45 19 7.1 267 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.50 204 16.3 1248 CRMSALL SECONDARY STRUCTURE . . 2.89 157 19.0 825 CRMSALL SURFACE . . . . . . . . 3.63 169 22.7 745 CRMSALL BURIED . . . . . . . . 2.78 35 7.0 503 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.893 0.228 0.117 23 15.2 151 ERRCA SECONDARY STRUCTURE . . 0.354 0.145 0.077 17 17.2 99 ERRCA SURFACE . . . . . . . . 0.933 0.222 0.112 19 20.7 92 ERRCA BURIED . . . . . . . . 0.704 0.255 0.143 4 6.8 59 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.872 0.236 0.126 114 15.2 750 ERRMC SECONDARY STRUCTURE . . 0.414 0.168 0.094 85 17.3 492 ERRMC SURFACE . . . . . . . . 0.914 0.236 0.126 94 20.6 456 ERRMC BURIED . . . . . . . . 0.676 0.236 0.126 20 6.8 294 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.669 0.477 0.240 112 17.4 644 ERRSC RELIABLE SIDE CHAINS . 2.420 0.462 0.232 106 19.4 546 ERRSC SECONDARY STRUCTURE . . 2.180 0.434 0.218 89 20.7 429 ERRSC SURFACE . . . . . . . . 2.779 0.482 0.242 93 24.7 377 ERRSC BURIED . . . . . . . . 2.128 0.453 0.226 19 7.1 267 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.850 0.366 0.187 204 16.3 1248 ERRALL SECONDARY STRUCTURE . . 1.411 0.317 0.164 157 19.0 825 ERRALL SURFACE . . . . . . . . 1.932 0.368 0.188 169 22.7 745 ERRALL BURIED . . . . . . . . 1.457 0.353 0.181 35 7.0 503 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 3 18 20 21 23 23 151 DISTCA CA (P) 1.99 11.92 13.25 13.91 15.23 151 DISTCA CA (RMS) 0.84 1.32 1.48 1.61 2.26 DISTCA ALL (N) 20 109 134 173 202 204 1248 DISTALL ALL (P) 1.60 8.73 10.74 13.86 16.19 1248 DISTALL ALL (RMS) 0.82 1.38 1.66 2.41 3.34 DISTALL END of the results output