####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 28 ( 236), selected 25 , name T0561TS207_1-D1 # Molecule2: number of CA atoms 151 ( 1248), selected 25 , name T0561-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0561TS207_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 137 - 154 4.64 11.38 LCS_AVERAGE: 10.99 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 137 - 148 1.83 14.63 LCS_AVERAGE: 5.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 137 - 145 0.56 14.47 LCS_AVERAGE: 3.68 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 25 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 137 M 137 9 12 18 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT P 138 P 138 9 12 18 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT P 139 P 139 9 12 18 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT E 140 E 140 9 12 18 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT E 141 E 141 9 12 18 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT K 142 K 142 9 12 18 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT K 143 K 143 9 12 18 5 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT R 144 R 144 9 12 18 5 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT R 145 R 145 9 12 18 3 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT M 146 M 146 4 12 18 3 4 9 11 11 11 11 12 12 13 14 16 17 17 18 18 19 19 20 21 LCS_GDT E 147 E 147 4 12 18 3 4 7 11 11 11 11 12 12 13 14 16 17 17 18 18 19 19 20 21 LCS_GDT R 148 R 148 3 12 18 3 3 9 10 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT K 149 K 149 4 4 18 3 3 6 10 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT Q 150 Q 150 4 4 18 3 3 4 8 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT R 151 R 151 4 4 18 3 3 4 4 5 7 8 10 11 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT I 152 I 152 4 4 18 1 3 4 6 6 7 8 10 12 14 15 16 17 17 18 18 19 19 20 21 LCS_GDT E 153 E 153 3 4 18 0 4 4 6 7 7 8 10 11 13 15 16 17 17 18 18 19 19 20 21 LCS_GDT E 154 E 154 3 4 18 3 3 4 6 6 7 8 10 11 12 14 14 14 16 18 18 19 19 20 21 LCS_GDT A 155 A 155 3 5 13 0 3 3 4 4 5 7 8 9 10 11 13 14 16 17 18 19 19 20 21 LCS_GDT R 156 R 156 4 5 13 3 3 4 4 4 5 7 8 9 10 11 13 14 16 17 18 19 19 20 21 LCS_GDT R 157 R 157 4 5 13 3 3 4 5 5 5 7 8 9 10 11 13 14 16 17 17 18 19 20 20 LCS_GDT H 158 H 158 4 5 13 3 3 4 5 5 5 6 8 9 10 11 13 14 15 17 17 18 19 19 20 LCS_GDT G 159 G 159 4 5 13 3 3 4 5 5 5 6 8 9 10 11 13 14 16 17 17 18 19 20 20 LCS_GDT M 160 M 160 3 5 13 3 3 3 5 5 5 7 8 10 10 11 13 14 16 17 17 18 19 20 20 LCS_GDT P 161 P 161 3 5 13 3 4 4 6 6 7 8 10 11 12 14 14 14 16 17 18 19 19 20 21 LCS_AVERAGE LCS_A: 6.68 ( 3.68 5.38 10.99 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 9 11 12 12 12 12 12 14 15 16 17 17 18 18 19 19 20 21 GDT PERCENT_AT 3.97 5.96 5.96 7.28 7.95 7.95 7.95 7.95 7.95 9.27 9.93 10.60 11.26 11.26 11.92 11.92 12.58 12.58 13.25 13.91 GDT RMS_LOCAL 0.36 0.56 0.56 1.18 1.53 1.53 1.53 1.53 1.53 3.00 3.25 3.63 3.88 3.88 4.64 4.64 5.28 5.28 5.93 6.31 GDT RMS_ALL_AT 14.71 14.47 14.47 14.69 14.67 14.67 14.67 14.67 14.67 13.15 12.39 12.47 12.45 12.45 11.38 11.38 10.68 10.68 9.63 9.24 # Checking swapping # possible swapping detected: E 141 E 141 # possible swapping detected: E 147 E 147 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 137 M 137 1.132 0 0.342 1.415 4.977 67.738 61.131 LGA P 138 P 138 1.243 0 0.221 0.282 1.957 79.286 77.755 LGA P 139 P 139 1.587 0 0.072 0.346 3.073 79.286 70.952 LGA E 140 E 140 0.740 0 0.152 0.431 1.245 90.476 88.466 LGA E 141 E 141 0.337 0 0.035 0.950 4.974 95.238 72.646 LGA K 142 K 142 1.469 0 0.037 0.813 2.699 77.381 70.582 LGA K 143 K 143 1.624 0 0.078 0.781 4.070 75.000 68.942 LGA R 144 R 144 1.028 2 0.094 0.923 4.254 79.286 55.541 LGA R 145 R 145 2.414 2 0.084 0.923 5.091 53.929 41.429 LGA M 146 M 146 6.529 0 0.152 0.956 12.406 16.310 9.643 LGA E 147 E 147 6.890 0 0.065 1.047 13.565 21.071 9.894 LGA R 148 R 148 1.122 2 0.461 0.764 9.850 69.048 34.113 LGA K 149 K 149 1.671 0 0.573 0.554 5.076 59.405 63.175 LGA Q 150 Q 150 2.500 0 0.058 1.453 6.911 46.429 52.751 LGA R 151 R 151 8.901 2 0.603 0.834 15.772 5.714 2.078 LGA I 152 I 152 8.891 0 0.628 0.847 11.461 1.548 3.214 LGA E 153 E 153 9.959 0 0.539 0.839 13.785 0.833 4.762 LGA E 154 E 154 17.404 0 0.623 0.520 21.846 0.000 0.000 LGA A 155 A 155 19.829 0 0.605 0.590 20.414 0.000 0.000 LGA R 156 R 156 20.945 2 0.601 1.487 24.512 0.000 0.000 LGA R 157 R 157 25.685 2 0.401 1.009 29.703 0.000 0.000 LGA H 158 H 158 30.900 0 0.685 0.863 37.009 0.000 0.000 LGA G 159 G 159 30.064 0 0.678 0.678 31.761 0.000 0.000 LGA M 160 M 160 28.324 0 0.067 1.152 32.995 0.000 0.000 LGA P 161 P 161 23.480 0 0.280 0.532 28.229 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 25 100 100 100.00 220 208 94.55 151 SUMMARY(RMSD_GDC): 8.156 8.043 9.234 6.079 5.212 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 28 151 4.0 12 1.53 8.278 7.653 0.738 LGA_LOCAL RMSD: 1.527 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.673 Number of assigned atoms: 25 Std_ASGN_ATOMS RMSD: 8.156 Standard rmsd on all 25 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.279539 * X + 0.960123 * Y + -0.004563 * Z + -9.036617 Y_new = 0.554918 * X + 0.157682 * Y + -0.816825 * Z + 54.142010 Z_new = -0.783533 * X + -0.230867 * Y + -0.576868 * Z + 24.282253 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.037439 0.900331 -2.760907 [DEG: 116.7366 51.5852 -158.1883 ] ZXZ: -0.005587 2.185685 -1.857337 [DEG: -0.3201 125.2306 -106.4175 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0561TS207_1-D1 REMARK 2: T0561-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0561TS207_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 28 151 4.0 12 1.53 7.653 8.16 REMARK ---------------------------------------------------------- MOLECULE T0561TS207_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0561 REMARK MODEL 1 REMARK PARENT 1WNM_A 2FK4_A 1XQO_A 1V5X_A ATOM 1 N PHE 134 -2.351 48.229 19.734 1.00 0.00 N ATOM 2 CA PHE 134 -3.027 48.173 18.419 1.00 0.00 C ATOM 3 CB PHE 134 -3.129 49.593 17.825 1.00 0.00 C ATOM 4 CG PHE 134 -3.919 50.392 18.814 1.00 0.00 C ATOM 5 CD1 PHE 134 -5.301 50.391 18.810 1.00 0.00 C ATOM 6 CD2 PHE 134 -3.261 51.141 19.768 1.00 0.00 C ATOM 7 CE1 PHE 134 -5.999 51.133 19.736 1.00 0.00 C ATOM 8 CE2 PHE 134 -3.960 51.883 20.691 1.00 0.00 C ATOM 9 CZ PHE 134 -5.332 51.874 20.682 1.00 0.00 C ATOM 10 C PHE 134 -2.267 47.265 17.498 1.00 0.00 C ATOM 11 O PHE 134 -1.140 46.861 17.782 1.00 0.00 O ATOM 12 N LYS 135 -2.891 46.883 16.374 1.00 0.00 N ATOM 13 CA LYS 135 -2.304 45.985 15.418 1.00 0.00 C ATOM 14 CB LYS 135 -3.152 44.717 15.243 1.00 0.00 C ATOM 15 CG LYS 135 -2.508 43.623 14.401 1.00 0.00 C ATOM 16 CD LYS 135 -3.284 42.307 14.465 1.00 0.00 C ATOM 17 CE LYS 135 -2.891 41.338 13.353 1.00 0.00 C ATOM 18 NZ LYS 135 -3.282 41.901 12.037 1.00 0.00 N ATOM 19 C LYS 135 -2.317 46.731 14.124 1.00 0.00 C ATOM 20 O LYS 135 -1.922 47.895 14.077 1.00 0.00 O ATOM 21 N ASP 136 -2.709 46.069 13.013 1.00 0.00 N ATOM 22 CA ASP 136 -2.896 46.835 11.818 1.00 0.00 C ATOM 23 CB ASP 136 -2.745 46.069 10.486 1.00 0.00 C ATOM 24 CG ASP 136 -1.278 46.058 10.070 1.00 0.00 C ATOM 25 OD1 ASP 136 -0.532 46.968 10.529 1.00 0.00 O ATOM 26 OD2 ASP 136 -0.885 45.167 9.273 1.00 0.00 O ATOM 27 C ASP 136 -4.292 47.351 11.899 1.00 0.00 C ATOM 28 O ASP 136 -5.177 46.975 11.126 1.00 0.00 O ATOM 29 N MET 137 -4.505 48.237 12.887 1.00 0.00 N ATOM 30 CA MET 137 -5.775 48.852 13.119 1.00 0.00 C ATOM 31 CB MET 137 -6.107 49.017 14.613 1.00 0.00 C ATOM 32 CG MET 137 -5.998 47.718 15.416 1.00 0.00 C ATOM 33 SD MET 137 -6.840 46.307 14.644 1.00 0.00 S ATOM 34 CE MET 137 -8.324 47.270 14.246 1.00 0.00 C ATOM 35 C MET 137 -5.597 50.224 12.581 1.00 0.00 C ATOM 36 O MET 137 -4.582 50.853 12.858 1.00 0.00 O ATOM 37 N PRO 138 -6.555 50.713 11.854 1.00 0.00 N ATOM 38 CA PRO 138 -6.375 51.984 11.237 1.00 0.00 C ATOM 39 CD PRO 138 -7.542 49.900 11.167 1.00 0.00 C ATOM 40 CB PRO 138 -7.586 52.193 10.337 1.00 0.00 C ATOM 41 CG PRO 138 -7.982 50.753 9.961 1.00 0.00 C ATOM 42 C PRO 138 -6.189 52.991 12.299 1.00 0.00 C ATOM 43 O PRO 138 -6.838 52.898 13.339 1.00 0.00 O ATOM 44 N PRO 139 -5.294 53.901 12.059 1.00 0.00 N ATOM 45 CA PRO 139 -4.946 54.914 13.004 1.00 0.00 C ATOM 46 CD PRO 139 -4.335 53.771 10.981 1.00 0.00 C ATOM 47 CB PRO 139 -3.804 55.698 12.353 1.00 0.00 C ATOM 48 CG PRO 139 -3.171 54.696 11.374 1.00 0.00 C ATOM 49 C PRO 139 -6.109 55.773 13.340 1.00 0.00 C ATOM 50 O PRO 139 -6.271 56.139 14.501 1.00 0.00 O ATOM 51 N GLU 140 -6.944 56.097 12.341 1.00 0.00 N ATOM 52 CA GLU 140 -8.051 56.960 12.597 1.00 0.00 C ATOM 53 CB GLU 140 -8.855 57.254 11.321 1.00 0.00 C ATOM 54 CG GLU 140 -9.375 55.982 10.651 1.00 0.00 C ATOM 55 CD GLU 140 -9.655 56.292 9.194 1.00 0.00 C ATOM 56 OE1 GLU 140 -9.183 57.364 8.729 1.00 0.00 O ATOM 57 OE2 GLU 140 -10.325 55.462 8.520 1.00 0.00 O ATOM 58 C GLU 140 -8.969 56.299 13.568 1.00 0.00 C ATOM 59 O GLU 140 -9.387 56.914 14.548 1.00 0.00 O ATOM 60 N GLU 141 -9.287 55.013 13.335 1.00 0.00 N ATOM 61 CA GLU 141 -10.272 54.394 14.173 1.00 0.00 C ATOM 62 CB GLU 141 -10.815 53.064 13.640 1.00 0.00 C ATOM 63 CG GLU 141 -9.847 51.885 13.680 1.00 0.00 C ATOM 64 CD GLU 141 -10.454 50.812 12.786 1.00 0.00 C ATOM 65 OE1 GLU 141 -10.760 51.153 11.614 1.00 0.00 O ATOM 66 OE2 GLU 141 -10.624 49.654 13.251 1.00 0.00 O ATOM 67 C GLU 141 -9.773 54.167 15.557 1.00 0.00 C ATOM 68 O GLU 141 -10.477 54.466 16.516 1.00 0.00 O ATOM 69 N LYS 142 -8.526 53.677 15.703 1.00 0.00 N ATOM 70 CA LYS 142 -8.069 53.365 17.022 1.00 0.00 C ATOM 71 CB LYS 142 -6.679 52.683 17.041 1.00 0.00 C ATOM 72 CG LYS 142 -5.555 53.390 16.274 1.00 0.00 C ATOM 73 CD LYS 142 -5.024 54.649 16.965 1.00 0.00 C ATOM 74 CE LYS 142 -3.974 55.393 16.140 1.00 0.00 C ATOM 75 NZ LYS 142 -2.624 54.858 16.417 1.00 0.00 N ATOM 76 C LYS 142 -8.070 54.606 17.863 1.00 0.00 C ATOM 77 O LYS 142 -8.474 54.576 19.028 1.00 0.00 O ATOM 78 N LYS 143 -7.673 55.737 17.259 1.00 0.00 N ATOM 79 CA LYS 143 -7.523 56.971 17.983 1.00 0.00 C ATOM 80 CB LYS 143 -7.160 58.158 17.073 1.00 0.00 C ATOM 81 CG LYS 143 -6.828 59.432 17.854 1.00 0.00 C ATOM 82 CD LYS 143 -6.548 60.632 16.957 1.00 0.00 C ATOM 83 CE LYS 143 -7.732 61.598 16.952 1.00 0.00 C ATOM 84 NZ LYS 143 -7.881 62.165 18.309 1.00 0.00 N ATOM 85 C LYS 143 -8.828 57.334 18.610 1.00 0.00 C ATOM 86 O LYS 143 -8.909 57.654 19.797 1.00 0.00 O ATOM 87 N ARG 144 -9.894 57.297 17.803 1.00 0.00 N ATOM 88 CA ARG 144 -11.206 57.620 18.274 1.00 0.00 C ATOM 89 CB ARG 144 -12.209 57.814 17.126 1.00 0.00 C ATOM 90 CG ARG 144 -11.884 59.008 16.220 1.00 0.00 C ATOM 91 CD ARG 144 -13.055 59.446 15.341 1.00 0.00 C ATOM 92 NE ARG 144 -14.190 59.735 16.264 1.00 0.00 N ATOM 93 CZ ARG 144 -15.466 59.866 15.795 1.00 0.00 C ATOM 96 C ARG 144 -11.703 56.501 19.131 1.00 0.00 C ATOM 97 O ARG 144 -12.542 56.685 20.019 1.00 0.00 O ATOM 98 N ARG 145 -11.115 55.318 18.906 1.00 0.00 N ATOM 99 CA ARG 145 -11.662 54.045 19.241 1.00 0.00 C ATOM 100 CB ARG 145 -10.730 52.842 18.995 1.00 0.00 C ATOM 101 CG ARG 145 -11.008 52.071 17.704 1.00 0.00 C ATOM 102 CD ARG 145 -10.080 50.882 17.490 1.00 0.00 C ATOM 103 NE ARG 145 -10.915 49.793 16.924 1.00 0.00 N ATOM 104 CZ ARG 145 -11.770 49.115 17.741 1.00 0.00 C ATOM 107 C ARG 145 -12.188 53.804 20.582 1.00 0.00 C ATOM 108 O ARG 145 -13.296 53.279 20.592 1.00 0.00 O ATOM 109 N MET 146 -11.493 54.010 21.716 1.00 0.00 N ATOM 110 CA MET 146 -12.358 53.517 22.753 1.00 0.00 C ATOM 111 CB MET 146 -11.660 53.135 24.075 1.00 0.00 C ATOM 112 CG MET 146 -11.335 54.245 25.067 1.00 0.00 C ATOM 113 SD MET 146 -10.625 53.596 26.613 1.00 0.00 S ATOM 114 CE MET 146 -12.042 52.569 27.098 1.00 0.00 C ATOM 115 C MET 146 -13.568 54.391 22.995 1.00 0.00 C ATOM 116 O MET 146 -14.663 54.059 22.559 1.00 0.00 O ATOM 117 N GLU 147 -13.462 55.530 23.689 1.00 0.00 N ATOM 118 CA GLU 147 -14.578 56.420 23.574 1.00 0.00 C ATOM 119 CB GLU 147 -15.218 56.871 24.898 1.00 0.00 C ATOM 120 CG GLU 147 -16.074 55.751 25.500 1.00 0.00 C ATOM 121 CD GLU 147 -17.119 56.330 26.446 1.00 0.00 C ATOM 122 OE1 GLU 147 -16.870 57.412 27.043 1.00 0.00 O ATOM 123 OE2 GLU 147 -18.194 55.686 26.574 1.00 0.00 O ATOM 124 C GLU 147 -14.144 57.600 22.783 1.00 0.00 C ATOM 125 O GLU 147 -14.903 58.223 22.043 1.00 0.00 O ATOM 126 N ARG 148 -12.862 57.936 23.021 1.00 0.00 N ATOM 127 CA ARG 148 -12.120 59.066 22.533 1.00 0.00 C ATOM 128 CB ARG 148 -12.951 60.365 22.512 1.00 0.00 C ATOM 129 CG ARG 148 -12.175 61.636 22.131 1.00 0.00 C ATOM 130 CD ARG 148 -13.020 62.908 22.253 1.00 0.00 C ATOM 131 NE ARG 148 -12.159 64.092 21.949 1.00 0.00 N ATOM 132 CZ ARG 148 -11.780 64.941 22.953 1.00 0.00 C ATOM 135 C ARG 148 -11.076 59.242 23.590 1.00 0.00 C ATOM 136 O ARG 148 -10.917 60.315 24.171 1.00 0.00 O ATOM 137 N LYS 149 -10.300 58.179 23.845 1.00 0.00 N ATOM 138 CA LYS 149 -9.456 58.216 25.001 1.00 0.00 C ATOM 139 CB LYS 149 -9.095 56.832 25.546 1.00 0.00 C ATOM 140 CG LYS 149 -8.593 56.919 26.982 1.00 0.00 C ATOM 141 CD LYS 149 -8.568 55.577 27.700 1.00 0.00 C ATOM 142 CE LYS 149 -8.458 55.714 29.214 1.00 0.00 C ATOM 143 NZ LYS 149 -8.631 54.393 29.854 1.00 0.00 N ATOM 144 C LYS 149 -8.182 58.955 24.769 1.00 0.00 C ATOM 145 O LYS 149 -7.624 58.997 23.677 1.00 0.00 O ATOM 146 N GLN 150 -7.724 59.641 25.825 1.00 0.00 N ATOM 147 CA GLN 150 -6.441 60.274 25.828 1.00 0.00 C ATOM 148 CB GLN 150 -6.245 61.125 27.092 1.00 0.00 C ATOM 149 CG GLN 150 -4.786 61.497 27.368 1.00 0.00 C ATOM 150 CD GLN 150 -4.383 62.695 26.516 1.00 0.00 C ATOM 151 OE1 GLN 150 -3.197 63.016 26.433 1.00 0.00 O ATOM 152 NE2 GLN 150 -5.367 63.376 25.876 1.00 0.00 N ATOM 153 C GLN 150 -5.404 59.207 25.869 1.00 0.00 C ATOM 154 O GLN 150 -4.408 59.245 25.145 1.00 0.00 O ATOM 155 N ARG 151 -5.623 58.214 26.748 1.00 0.00 N ATOM 156 CA ARG 151 -4.663 57.164 26.889 1.00 0.00 C ATOM 157 CB ARG 151 -3.520 57.545 27.857 1.00 0.00 C ATOM 158 CG ARG 151 -2.672 58.750 27.406 1.00 0.00 C ATOM 159 CD ARG 151 -1.203 58.414 27.085 1.00 0.00 C ATOM 160 NE ARG 151 -0.450 59.668 26.744 1.00 0.00 N ATOM 161 CZ ARG 151 0.915 59.681 26.831 1.00 0.00 C ATOM 164 C ARG 151 -5.389 55.995 27.475 1.00 0.00 C ATOM 165 O ARG 151 -5.726 55.984 28.659 1.00 0.00 O ATOM 166 N ILE 152 -5.616 54.969 26.641 1.00 0.00 N ATOM 167 CA ILE 152 -6.311 53.786 27.029 1.00 0.00 C ATOM 168 CB ILE 152 -6.851 53.044 25.853 1.00 0.00 C ATOM 169 CG2 ILE 152 -5.681 52.335 25.150 1.00 0.00 C ATOM 170 CG1 ILE 152 -7.965 52.094 26.299 1.00 0.00 C ATOM 171 CD1 ILE 152 -8.762 51.536 25.121 1.00 0.00 C ATOM 172 C ILE 152 -5.347 52.919 27.769 1.00 0.00 C ATOM 173 O ILE 152 -4.140 53.004 27.559 1.00 0.00 O ATOM 174 N GLU 153 -5.853 52.085 28.697 1.00 0.00 N ATOM 175 CA GLU 153 -4.988 51.259 29.490 1.00 0.00 C ATOM 176 CB GLU 153 -5.702 50.570 30.658 1.00 0.00 C ATOM 177 CG GLU 153 -4.828 50.487 31.903 1.00 0.00 C ATOM 178 CD GLU 153 -5.187 51.721 32.719 1.00 0.00 C ATOM 179 OE1 GLU 153 -6.311 52.255 32.522 1.00 0.00 O ATOM 180 OE2 GLU 153 -4.341 52.149 33.549 1.00 0.00 O ATOM 181 C GLU 153 -4.459 50.179 28.592 1.00 0.00 C ATOM 182 O GLU 153 -4.679 50.223 27.381 1.00 0.00 O ATOM 183 N GLU 154 -3.863 49.075 29.094 1.00 0.00 N ATOM 184 CA GLU 154 -3.386 48.053 28.191 1.00 0.00 C ATOM 185 CB GLU 154 -2.133 47.316 28.736 1.00 0.00 C ATOM 186 CG GLU 154 -0.926 48.254 28.987 1.00 0.00 C ATOM 187 CD GLU 154 0.267 47.568 29.656 1.00 0.00 C ATOM 188 OE1 GLU 154 0.068 46.756 30.598 1.00 0.00 O ATOM 189 OE2 GLU 154 1.410 47.888 29.223 1.00 0.00 O ATOM 190 C GLU 154 -4.469 47.019 27.978 1.00 0.00 C ATOM 191 O GLU 154 -4.916 46.414 28.957 1.00 0.00 O ATOM 192 N ALA 155 -4.913 46.826 26.702 1.00 0.00 N ATOM 193 CA ALA 155 -5.886 45.841 26.258 1.00 0.00 C ATOM 194 CB ALA 155 -7.265 45.920 26.929 1.00 0.00 C ATOM 195 C ALA 155 -6.166 46.106 24.810 1.00 0.00 C ATOM 196 O ALA 155 -6.864 47.080 24.507 1.00 0.00 O ATOM 197 N ARG 156 -5.686 45.264 23.855 1.00 0.00 N ATOM 198 CA ARG 156 -5.860 45.716 22.502 1.00 0.00 C ATOM 199 CB ARG 156 -4.547 45.964 21.757 1.00 0.00 C ATOM 200 CG ARG 156 -4.076 47.395 21.986 1.00 0.00 C ATOM 201 CD ARG 156 -5.266 48.348 21.902 1.00 0.00 C ATOM 202 NE ARG 156 -5.980 48.041 20.633 1.00 0.00 N ATOM 203 CZ ARG 156 -7.298 48.362 20.485 1.00 0.00 C ATOM 206 C ARG 156 -6.674 44.754 21.695 1.00 0.00 C ATOM 207 O ARG 156 -6.740 43.573 22.009 1.00 0.00 O ATOM 208 N ARG 157 -7.292 45.243 20.592 1.00 0.00 N ATOM 209 CA ARG 157 -8.166 44.432 19.779 1.00 0.00 C ATOM 210 CB ARG 157 -8.641 45.181 18.517 1.00 0.00 C ATOM 211 CG ARG 157 -9.703 44.454 17.688 1.00 0.00 C ATOM 212 CD ARG 157 -10.002 45.185 16.377 1.00 0.00 C ATOM 213 NE ARG 157 -11.121 44.495 15.673 1.00 0.00 N ATOM 214 CZ ARG 157 -10.898 43.689 14.592 1.00 0.00 C ATOM 217 C ARG 157 -7.363 43.252 19.355 1.00 0.00 C ATOM 218 O ARG 157 -7.752 42.101 19.536 1.00 0.00 O ATOM 219 N HIS 158 -6.185 43.542 18.794 1.00 0.00 N ATOM 220 CA HIS 158 -5.208 42.556 18.494 1.00 0.00 C ATOM 221 ND1 HIS 158 -5.296 39.570 16.868 1.00 0.00 N ATOM 222 CG HIS 158 -4.527 40.712 16.927 1.00 0.00 C ATOM 223 CB HIS 158 -5.126 42.097 17.032 1.00 0.00 C ATOM 224 NE2 HIS 158 -3.180 38.896 16.833 1.00 0.00 N ATOM 225 CD2 HIS 158 -3.234 40.280 16.903 1.00 0.00 C ATOM 226 CE1 HIS 158 -4.447 38.515 16.812 1.00 0.00 C ATOM 227 C HIS 158 -4.004 43.366 18.782 1.00 0.00 C ATOM 228 O HIS 158 -3.941 43.982 19.843 1.00 0.00 O ATOM 229 N GLY 159 -3.038 43.423 17.846 1.00 0.00 N ATOM 230 CA GLY 159 -1.892 44.236 18.115 1.00 0.00 C ATOM 231 C GLY 159 -1.279 43.647 19.330 1.00 0.00 C ATOM 232 O GLY 159 -1.052 42.443 19.404 1.00 0.00 O ATOM 233 N MET 160 -1.015 44.499 20.335 1.00 0.00 N ATOM 234 CA MET 160 -0.452 43.973 21.532 1.00 0.00 C ATOM 235 CB MET 160 1.051 44.236 21.655 1.00 0.00 C ATOM 236 CG MET 160 1.622 43.678 22.957 1.00 0.00 C ATOM 237 SD MET 160 3.169 44.454 23.516 1.00 0.00 S ATOM 238 CE MET 160 3.390 43.294 24.895 1.00 0.00 C ATOM 239 C MET 160 -1.109 44.638 22.695 1.00 0.00 C ATOM 240 O MET 160 -1.509 45.803 22.651 1.00 0.00 O ATOM 241 N PRO 161 -1.230 43.902 23.748 1.00 0.00 N ATOM 242 CA PRO 161 -1.782 44.501 24.922 1.00 0.00 C ATOM 243 CD PRO 161 -1.631 42.512 23.618 1.00 0.00 C ATOM 244 CB PRO 161 -2.181 43.347 25.840 1.00 0.00 C ATOM 245 CG PRO 161 -2.516 42.220 24.844 1.00 0.00 C ATOM 246 C PRO 161 -0.728 45.375 25.487 1.00 0.00 C ATOM 247 O PRO 161 -1.000 46.588 25.695 1.00 0.00 O ATOM 248 OXT PRO 161 0.384 44.842 25.748 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 106.22 32.1 28 9.4 297 ARMSMC SECONDARY STRUCTURE . . 105.87 30.4 23 11.8 195 ARMSMC SURFACE . . . . . . . . 106.22 32.1 28 15.5 181 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 116 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.95 38.5 13 10.2 128 ARMSSC1 RELIABLE SIDE CHAINS . 81.95 38.5 13 10.8 120 ARMSSC1 SECONDARY STRUCTURE . . 93.17 20.0 10 12.3 81 ARMSSC1 SURFACE . . . . . . . . 81.95 38.5 13 16.7 78 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.52 38.5 13 11.8 110 ARMSSC2 RELIABLE SIDE CHAINS . 69.52 38.5 13 16.0 81 ARMSSC2 SECONDARY STRUCTURE . . 67.31 40.0 10 14.1 71 ARMSSC2 SURFACE . . . . . . . . 69.52 38.5 13 18.8 69 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.08 37.5 8 16.0 50 ARMSSC3 RELIABLE SIDE CHAINS . 65.92 28.6 7 16.3 43 ARMSSC3 SECONDARY STRUCTURE . . 65.88 28.6 7 21.2 33 ARMSSC3 SURFACE . . . . . . . . 62.08 37.5 8 22.2 36 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.16 (Number of atoms: 25) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.16 25 16.6 151 CRMSCA CRN = ALL/NP . . . . . 0.3262 CRMSCA SECONDARY STRUCTURE . . 6.55 17 17.2 99 CRMSCA SURFACE . . . . . . . . 8.35 21 22.8 92 CRMSCA BURIED . . . . . . . . 7.02 4 6.8 59 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.16 124 16.5 750 CRMSMC SECONDARY STRUCTURE . . 6.72 85 17.3 492 CRMSMC SURFACE . . . . . . . . 8.29 104 22.8 456 CRMSMC BURIED . . . . . . . . 7.51 20 6.8 294 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.36 108 16.8 644 CRMSSC RELIABLE SIDE CHAINS . 9.89 102 18.7 546 CRMSSC SECONDARY STRUCTURE . . 9.69 79 18.4 429 CRMSSC SURFACE . . . . . . . . 10.61 93 24.7 377 CRMSSC BURIED . . . . . . . . 8.65 15 5.6 267 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.32 208 16.7 1248 CRMSALL SECONDARY STRUCTURE . . 8.38 147 17.8 825 CRMSALL SURFACE . . . . . . . . 9.52 177 23.8 745 CRMSALL BURIED . . . . . . . . 8.10 31 6.2 503 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.347 1.000 0.500 25 16.6 151 ERRCA SECONDARY STRUCTURE . . 6.043 1.000 0.500 17 17.2 99 ERRCA SURFACE . . . . . . . . 7.489 1.000 0.500 21 22.8 92 ERRCA BURIED . . . . . . . . 6.601 1.000 0.500 4 6.8 59 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.379 1.000 0.500 124 16.5 750 ERRMC SECONDARY STRUCTURE . . 6.206 1.000 0.500 85 17.3 492 ERRMC SURFACE . . . . . . . . 7.449 1.000 0.500 104 22.8 456 ERRMC BURIED . . . . . . . . 7.018 1.000 0.500 20 6.8 294 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.564 1.000 0.500 108 16.8 644 ERRSC RELIABLE SIDE CHAINS . 9.167 1.000 0.500 102 18.7 546 ERRSC SECONDARY STRUCTURE . . 8.934 1.000 0.500 79 18.4 429 ERRSC SURFACE . . . . . . . . 9.795 1.000 0.500 93 24.7 377 ERRSC BURIED . . . . . . . . 8.136 1.000 0.500 15 5.6 267 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.457 1.000 0.500 208 16.7 1248 ERRALL SECONDARY STRUCTURE . . 7.601 1.000 0.500 147 17.8 825 ERRALL SURFACE . . . . . . . . 8.610 1.000 0.500 177 23.8 745 ERRALL BURIED . . . . . . . . 7.585 1.000 0.500 31 6.2 503 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 4 6 19 25 151 DISTCA CA (P) 0.00 0.00 2.65 3.97 12.58 151 DISTCA CA (RMS) 0.00 0.00 2.51 3.00 6.16 DISTCA ALL (N) 1 3 11 39 137 208 1248 DISTALL ALL (P) 0.08 0.24 0.88 3.12 10.98 1248 DISTALL ALL (RMS) 0.37 1.28 2.29 3.45 6.48 DISTALL END of the results output