####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 23 ( 92), selected 23 , name T0561AL396_1-D1 # Molecule2: number of CA atoms 151 ( 1248), selected 23 , name T0561-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0561AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 137 - 159 1.58 1.58 LCS_AVERAGE: 15.23 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 137 - 159 1.58 1.58 LCS_AVERAGE: 15.23 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 137 - 156 0.96 1.67 LONGEST_CONTINUOUS_SEGMENT: 20 138 - 157 0.98 1.64 LCS_AVERAGE: 12.73 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 23 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 137 M 137 20 23 23 3 10 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT P 138 P 138 20 23 23 3 13 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT P 139 P 139 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 140 E 140 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 141 E 141 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT K 142 K 142 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT K 143 K 143 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 144 R 144 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 145 R 145 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT M 146 M 146 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 147 E 147 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 148 R 148 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT K 149 K 149 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT Q 150 Q 150 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 151 R 151 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT I 152 I 152 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 153 E 153 20 23 23 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT E 154 E 154 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT A 155 A 155 20 23 23 7 14 19 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 156 R 156 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT R 157 R 157 20 23 23 7 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT H 158 H 158 19 23 23 7 14 17 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 LCS_GDT G 159 G 159 3 23 23 0 3 3 3 4 5 6 8 14 23 23 23 23 23 23 23 23 23 23 23 LCS_AVERAGE LCS_A: 14.40 ( 12.73 15.23 15.23 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 14 20 22 22 22 22 22 22 23 23 23 23 23 23 23 23 23 23 23 GDT PERCENT_AT 5.96 9.27 13.25 14.57 14.57 14.57 14.57 14.57 14.57 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 15.23 GDT RMS_LOCAL 0.28 0.62 0.94 1.09 1.09 1.09 1.09 1.09 1.09 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 GDT RMS_ALL_AT 1.77 1.87 1.62 1.62 1.62 1.62 1.62 1.62 1.62 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 1.58 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 137 M 137 1.316 4 0.588 0.588 3.418 67.262 33.631 LGA P 138 P 138 1.473 3 0.135 0.135 1.489 81.429 46.531 LGA P 139 P 139 1.138 3 0.113 0.113 1.299 85.952 49.116 LGA E 140 E 140 0.831 5 0.135 0.135 1.311 85.952 38.201 LGA E 141 E 141 1.311 5 0.040 0.040 1.311 85.952 38.201 LGA K 142 K 142 0.896 5 0.034 0.034 0.896 90.476 40.212 LGA K 143 K 143 1.036 5 0.013 0.013 1.253 83.690 37.196 LGA R 144 R 144 1.203 7 0.105 0.105 1.203 83.690 30.433 LGA R 145 R 145 0.947 7 0.034 0.034 1.063 88.214 32.078 LGA M 146 M 146 0.658 4 0.004 0.004 0.725 90.476 45.238 LGA E 147 E 147 0.864 5 0.067 0.067 0.864 90.476 40.212 LGA R 148 R 148 0.783 7 0.047 0.047 0.823 90.476 32.900 LGA K 149 K 149 0.707 5 0.073 0.073 0.814 95.238 42.328 LGA Q 150 Q 150 0.519 5 0.102 0.102 0.644 95.238 42.328 LGA R 151 R 151 0.555 7 0.020 0.020 0.760 92.857 33.766 LGA I 152 I 152 0.835 4 0.075 0.075 1.008 88.214 44.107 LGA E 153 E 153 0.485 5 0.043 0.043 0.504 97.619 43.386 LGA E 154 E 154 0.652 5 0.114 0.114 0.876 92.857 41.270 LGA A 155 A 155 1.590 1 0.014 0.014 1.590 79.286 63.429 LGA R 156 R 156 1.311 7 0.063 0.063 1.311 85.952 31.255 LGA R 157 R 157 1.347 7 0.359 0.359 2.556 77.619 28.225 LGA H 158 H 158 1.967 6 0.549 0.549 3.813 63.452 25.381 LGA G 159 G 159 5.880 0 0.656 0.656 7.226 21.190 21.190 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 23 92 92 100.00 204 92 45.10 151 SUMMARY(RMSD_GDC): 1.578 1.637 1.637 12.673 5.832 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 23 151 4.0 22 1.09 13.411 14.378 1.854 LGA_LOCAL RMSD: 1.087 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.623 Number of assigned atoms: 23 Std_ASGN_ATOMS RMSD: 1.578 Standard rmsd on all 23 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.186165 * X + 0.625415 * Y + 0.757759 * Z + -10.146317 Y_new = -0.428147 * X + 0.745803 * Y + -0.510361 * Z + 57.768574 Z_new = -0.884326 * X + -0.229421 * Y + 0.406612 * Z + 23.981079 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.160641 1.085049 -0.513699 [DEG: -66.4998 62.1687 -29.4328 ] ZXZ: 0.978068 1.152053 -1.824630 [DEG: 56.0392 66.0078 -104.5436 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0561AL396_1-D1 REMARK 2: T0561-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0561AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 23 151 4.0 22 1.09 14.378 1.58 REMARK ---------------------------------------------------------- MOLECULE T0561AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1wnm_A ATOM 1 N MET 137 -6.356 47.747 11.297 1.00 0.00 N ATOM 2 CA MET 137 -5.918 48.656 12.388 1.00 0.00 C ATOM 3 C MET 137 -5.443 49.994 11.832 1.00 0.00 C ATOM 4 O MET 137 -4.314 50.418 12.080 1.00 0.00 O ATOM 5 N PRO 138 -6.313 50.657 11.078 1.00 0.00 N ATOM 6 CA PRO 138 -5.984 51.949 10.487 1.00 0.00 C ATOM 7 C PRO 138 -5.720 52.992 11.571 1.00 0.00 C ATOM 8 O PRO 138 -6.047 52.780 12.739 1.00 0.00 O ATOM 9 N PRO 139 -5.123 54.137 11.195 1.00 0.00 N ATOM 10 CA PRO 139 -4.818 55.214 12.143 1.00 0.00 C ATOM 11 C PRO 139 -6.078 55.852 12.717 1.00 0.00 C ATOM 12 O PRO 139 -6.071 56.367 13.835 1.00 0.00 O ATOM 13 N GLU 140 -7.158 55.813 11.944 1.00 0.00 N ATOM 14 CA GLU 140 -8.427 56.387 12.376 1.00 0.00 C ATOM 15 C GLU 140 -8.937 55.695 13.636 1.00 0.00 C ATOM 16 O GLU 140 -9.334 56.351 14.599 1.00 0.00 O ATOM 17 N GLU 141 -8.923 54.366 13.623 1.00 0.00 N ATOM 18 CA GLU 141 -9.383 53.582 14.763 1.00 0.00 C ATOM 19 C GLU 141 -8.603 53.942 16.024 1.00 0.00 C ATOM 20 O GLU 141 -9.154 53.954 17.125 1.00 0.00 O ATOM 21 N LYS 142 -7.319 54.237 15.856 1.00 0.00 N ATOM 22 CA LYS 142 -6.465 54.598 16.980 1.00 0.00 C ATOM 23 C LYS 142 -6.958 55.874 17.652 1.00 0.00 C ATOM 24 O LYS 142 -7.169 55.908 18.865 1.00 0.00 O ATOM 25 N LYS 143 -7.140 56.923 16.858 1.00 0.00 N ATOM 26 CA LYS 143 -7.608 58.204 17.374 1.00 0.00 C ATOM 27 C LYS 143 -8.983 58.070 18.018 1.00 0.00 C ATOM 28 O LYS 143 -9.265 58.699 19.038 1.00 0.00 O ATOM 29 N ARG 144 -9.838 57.245 17.419 1.00 0.00 N ATOM 30 CA ARG 144 -11.181 57.028 17.936 1.00 0.00 C ATOM 31 C ARG 144 -11.135 56.508 19.368 1.00 0.00 C ATOM 32 O ARG 144 -11.581 57.179 20.300 1.00 0.00 O ATOM 33 N ARG 145 -10.588 55.309 19.538 1.00 0.00 N ATOM 34 CA ARG 145 -10.479 54.698 20.857 1.00 0.00 C ATOM 35 C ARG 145 -9.635 55.565 21.787 1.00 0.00 C ATOM 36 O ARG 145 -9.905 55.655 22.985 1.00 0.00 O ATOM 37 N MET 146 -8.612 56.200 21.226 1.00 0.00 N ATOM 38 CA MET 146 -7.726 57.061 22.001 1.00 0.00 C ATOM 39 C MET 146 -8.478 58.272 22.539 1.00 0.00 C ATOM 40 O MET 146 -8.354 58.622 23.713 1.00 0.00 O ATOM 41 N GLU 147 -9.255 58.912 21.671 1.00 0.00 N ATOM 42 CA GLU 147 -10.026 60.088 22.055 1.00 0.00 C ATOM 43 C GLU 147 -11.056 59.742 23.127 1.00 0.00 C ATOM 44 O GLU 147 -11.155 60.422 24.147 1.00 0.00 O ATOM 45 N ARG 148 -11.822 58.683 22.886 1.00 0.00 N ATOM 46 CA ARG 148 -12.847 58.250 23.830 1.00 0.00 C ATOM 47 C ARG 148 -12.240 57.952 25.198 1.00 0.00 C ATOM 48 O ARG 148 -12.744 58.405 26.225 1.00 0.00 O ATOM 49 N LYS 149 -11.155 57.184 25.203 1.00 0.00 N ATOM 50 CA LYS 149 -10.481 56.824 26.444 1.00 0.00 C ATOM 51 C LYS 149 -9.893 58.057 27.125 1.00 0.00 C ATOM 52 O LYS 149 -9.821 58.125 28.352 1.00 0.00 O ATOM 53 N GLN 150 -9.471 59.027 26.319 1.00 0.00 N ATOM 54 CA GLN 150 -8.888 60.254 26.844 1.00 0.00 C ATOM 55 C GLN 150 -9.953 61.141 27.477 1.00 0.00 C ATOM 56 O GLN 150 -9.889 61.453 28.666 1.00 0.00 O ATOM 57 N ARG 151 -10.935 61.543 26.677 1.00 0.00 N ATOM 58 CA ARG 151 -12.015 62.390 27.163 1.00 0.00 C ATOM 59 C ARG 151 -12.663 61.777 28.400 1.00 0.00 C ATOM 60 O ARG 151 -13.080 62.489 29.315 1.00 0.00 O ATOM 61 N ILE 152 -12.725 60.448 28.427 1.00 0.00 N ATOM 62 CA ILE 152 -13.301 59.736 29.555 1.00 0.00 C ATOM 63 C ILE 152 -12.390 59.861 30.769 1.00 0.00 C ATOM 64 O ILE 152 -12.816 60.295 31.838 1.00 0.00 O ATOM 65 N GLU 153 -11.126 59.489 30.585 1.00 0.00 N ATOM 66 CA GLU 153 -10.139 59.568 31.655 1.00 0.00 C ATOM 67 C GLU 153 -10.085 60.975 32.235 1.00 0.00 C ATOM 68 O GLU 153 -10.013 61.155 33.450 1.00 0.00 O ATOM 69 N GLU 154 -10.134 61.969 31.354 1.00 0.00 N ATOM 70 CA GLU 154 -10.102 63.362 31.771 1.00 0.00 C ATOM 71 C GLU 154 -11.294 63.682 32.663 1.00 0.00 C ATOM 72 O GLU 154 -11.136 64.008 33.840 1.00 0.00 O ATOM 73 N ALA 155 -12.489 63.584 32.090 1.00 0.00 N ATOM 74 CA ALA 155 -13.719 63.861 32.826 1.00 0.00 C ATOM 75 C ALA 155 -13.761 63.079 34.137 1.00 0.00 C ATOM 76 O ALA 155 -14.059 63.638 35.194 1.00 0.00 O ATOM 77 N ARG 156 -13.461 61.785 34.064 1.00 0.00 N ATOM 78 CA ARG 156 -13.466 60.932 35.247 1.00 0.00 C ATOM 79 C ARG 156 -12.435 61.407 36.264 1.00 0.00 C ATOM 80 O ARG 156 -12.755 61.625 37.433 1.00 0.00 O ATOM 81 N ARG 157 -11.196 61.563 35.810 1.00 0.00 N ATOM 82 CA ARG 157 -10.110 62.013 36.677 1.00 0.00 C ATOM 83 C ARG 157 -10.509 63.262 37.456 1.00 0.00 C ATOM 84 O ARG 157 -10.283 63.353 38.663 1.00 0.00 O ATOM 85 N HIS 158 -11.100 64.221 36.756 1.00 0.00 N ATOM 86 CA HIS 158 -11.531 65.466 37.375 1.00 0.00 C ATOM 87 C HIS 158 -12.898 65.303 38.031 1.00 0.00 C ATOM 88 O HIS 158 -13.584 64.303 37.818 1.00 0.00 O ATOM 89 N GLY 159 -13.287 66.291 38.830 1.00 0.00 N ATOM 90 CA GLY 159 -14.574 66.257 39.518 1.00 0.00 C ATOM 91 C GLY 159 -14.796 67.535 40.320 1.00 0.00 C ATOM 92 O GLY 159 -13.934 68.435 40.248 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 92 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 48.17 79.2 24 8.1 297 ARMSMC SECONDARY STRUCTURE . . 53.94 73.7 19 9.7 195 ARMSMC SURFACE . . . . . . . . 48.17 79.2 24 13.3 181 ARMSMC BURIED . . . . . . . . 0.00 0.0 0 0.0 116 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 128 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 120 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 81 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 110 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 81 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 71 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.58 (Number of atoms: 23) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.58 23 15.2 151 CRMSCA CRN = ALL/NP . . . . . 0.0686 CRMSCA SECONDARY STRUCTURE . . 1.05 17 17.2 99 CRMSCA SURFACE . . . . . . . . 1.58 19 20.7 92 CRMSCA BURIED . . . . . . . . 1.59 4 6.8 59 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.65 92 12.3 750 CRMSMC SECONDARY STRUCTURE . . 0.97 68 13.8 492 CRMSMC SURFACE . . . . . . . . 1.67 76 16.7 456 CRMSMC BURIED . . . . . . . . 1.50 16 5.4 294 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 644 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 546 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 429 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 377 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 267 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.65 92 7.4 1248 CRMSALL SECONDARY STRUCTURE . . 0.97 68 8.2 825 CRMSALL SURFACE . . . . . . . . 1.67 76 10.2 745 CRMSALL BURIED . . . . . . . . 1.50 16 3.2 503 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.241 1.000 0.500 23 15.2 151 ERRCA SECONDARY STRUCTURE . . 0.969 1.000 0.500 17 17.2 99 ERRCA SURFACE . . . . . . . . 1.177 1.000 0.500 19 20.7 92 ERRCA BURIED . . . . . . . . 1.546 1.000 0.500 4 6.8 59 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.223 1.000 0.500 92 12.3 750 ERRMC SECONDARY STRUCTURE . . 0.892 1.000 0.500 68 13.8 492 ERRMC SURFACE . . . . . . . . 1.175 1.000 0.500 76 16.7 456 ERRMC BURIED . . . . . . . . 1.452 1.000 0.500 16 5.4 294 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 644 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 546 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 429 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 377 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 267 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.223 1.000 0.500 92 7.4 1248 ERRALL SECONDARY STRUCTURE . . 0.892 1.000 0.500 68 8.2 825 ERRALL SURFACE . . . . . . . . 1.175 1.000 0.500 76 10.2 745 ERRALL BURIED . . . . . . . . 1.452 1.000 0.500 16 3.2 503 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 12 20 22 22 23 23 151 DISTCA CA (P) 7.95 13.25 14.57 14.57 15.23 151 DISTCA CA (RMS) 0.75 0.99 1.15 1.15 1.58 DISTCA ALL (N) 48 82 86 89 92 92 1248 DISTALL ALL (P) 3.85 6.57 6.89 7.13 7.37 1248 DISTALL ALL (RMS) 0.67 0.99 1.08 1.22 1.65 DISTALL END of the results output