####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 28 ( 112), selected 21 , name T0561AL285_1-D1 # Molecule2: number of CA atoms 151 ( 1248), selected 21 , name T0561-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0561AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 121 - 144 4.97 6.60 LCS_AVERAGE: 9.93 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 137 - 147 0.45 19.64 LCS_AVERAGE: 5.14 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 137 - 147 0.45 19.64 LCS_AVERAGE: 5.08 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 119 L 119 3 3 10 0 3 3 3 4 5 5 7 8 8 9 9 9 9 9 9 17 19 20 21 LCS_GDT N 120 N 120 3 3 10 0 3 3 4 4 5 6 7 8 8 9 9 9 15 18 18 19 20 20 21 LCS_GDT V 121 V 121 3 3 16 3 3 3 4 4 5 6 7 8 9 13 15 17 17 18 19 19 20 20 21 LCS_GDT K 122 K 122 5 5 16 4 5 5 7 8 8 9 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT L 123 L 123 5 5 16 4 5 6 7 8 8 9 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT K 124 K 124 5 5 16 4 5 6 7 8 8 9 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT D 125 D 125 5 5 16 4 5 6 7 8 8 9 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT F 126 F 126 5 5 16 4 5 6 7 8 8 9 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT N 127 N 127 3 4 16 3 3 3 3 4 4 6 9 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT F 128 F 128 3 4 16 0 3 3 3 4 4 4 5 6 7 11 11 17 17 18 19 19 20 20 21 LCS_GDT M 137 M 137 11 11 16 8 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT P 138 P 138 11 11 16 8 11 11 11 11 11 11 11 12 13 13 15 17 17 18 19 19 20 20 21 LCS_GDT P 139 P 139 11 11 16 8 11 11 11 11 11 11 11 11 11 11 11 11 15 15 19 19 20 20 21 LCS_GDT E 140 E 140 11 11 16 8 11 11 11 11 11 11 11 11 11 11 12 13 15 17 19 19 20 20 21 LCS_GDT E 141 E 141 11 11 16 7 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT K 142 K 142 11 11 16 8 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT K 143 K 143 11 11 16 8 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT R 144 R 144 11 11 16 8 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_GDT R 145 R 145 11 11 13 8 11 11 11 11 11 11 11 11 12 14 15 17 17 18 19 19 20 20 21 LCS_GDT M 146 M 146 11 11 13 8 11 11 11 11 11 11 11 11 12 14 15 17 17 18 19 19 20 20 21 LCS_GDT E 147 E 147 11 11 13 7 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 LCS_AVERAGE LCS_A: 6.72 ( 5.08 5.14 9.93 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 11 11 11 11 11 11 12 13 14 15 17 17 18 19 19 20 20 21 GDT PERCENT_AT 5.30 7.28 7.28 7.28 7.28 7.28 7.28 7.28 7.95 8.61 9.27 9.93 11.26 11.26 11.92 12.58 12.58 13.25 13.25 13.91 GDT RMS_LOCAL 0.25 0.45 0.45 0.45 0.45 0.45 0.45 0.45 3.08 3.32 3.79 3.92 4.54 4.54 4.97 5.20 5.20 5.56 5.56 5.93 GDT RMS_ALL_AT 19.70 19.64 19.64 19.64 19.64 19.64 19.64 19.64 6.71 6.53 6.32 6.36 6.17 6.17 6.03 6.18 6.18 5.99 5.99 5.93 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 119 L 119 26.144 4 0.620 0.620 26.641 0.000 0.000 LGA N 120 N 120 28.844 4 0.631 0.631 28.844 0.000 0.000 LGA V 121 V 121 29.510 3 0.568 0.568 29.605 0.000 0.000 LGA K 122 K 122 29.444 5 0.580 0.580 30.431 0.000 0.000 LGA L 123 L 123 33.707 4 0.095 0.095 33.707 0.000 0.000 LGA K 124 K 124 34.158 5 0.070 0.070 34.158 0.000 0.000 LGA D 125 D 125 28.400 4 0.184 0.184 30.338 0.000 0.000 LGA F 126 F 126 27.276 7 0.359 0.359 28.118 0.000 0.000 LGA N 127 N 127 24.763 4 0.628 0.628 25.912 0.000 0.000 LGA F 128 F 128 19.446 7 0.534 0.534 21.402 0.000 0.000 LGA M 137 M 137 0.534 4 0.330 0.330 2.569 79.881 39.940 LGA P 138 P 138 0.495 3 0.183 0.183 1.635 90.833 51.905 LGA P 139 P 139 0.497 3 0.042 0.042 0.510 97.619 55.782 LGA E 140 E 140 0.553 5 0.138 0.138 0.731 92.857 41.270 LGA E 141 E 141 0.703 5 0.029 0.029 0.703 90.476 40.212 LGA K 142 K 142 0.330 5 0.038 0.038 0.362 100.000 44.444 LGA K 143 K 143 0.200 5 0.103 0.103 0.378 100.000 44.444 LGA R 144 R 144 0.129 7 0.043 0.043 0.228 100.000 36.364 LGA R 145 R 145 0.122 7 0.053 0.053 0.141 100.000 36.364 LGA M 146 M 146 0.225 4 0.048 0.048 0.390 100.000 50.000 LGA E 147 E 147 0.629 5 0.085 0.085 0.816 92.857 41.270 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 184 84 45.65 151 SUMMARY(RMSD_GDC): 5.933 5.641 5.641 6.917 3.192 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 28 151 4.0 11 0.45 8.609 7.579 2.008 LGA_LOCAL RMSD: 0.448 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.640 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 5.933 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.834414 * X + -0.517948 * Y + -0.188370 * Z + -32.531178 Y_new = 0.409865 * X + 0.354662 * Y + 0.840372 * Z + 24.807798 Z_new = -0.368461 * X + -0.778425 * Y + 0.508223 * Z + 46.889534 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.456584 0.377353 -0.992394 [DEG: 26.1603 21.6207 -56.8600 ] ZXZ: -2.921086 1.037676 -2.699498 [DEG: -167.3659 59.4544 -154.6698 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0561AL285_1-D1 REMARK 2: T0561-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0561AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 28 151 4.0 11 0.45 7.579 5.93 REMARK ---------------------------------------------------------- MOLECULE T0561AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2iqcA ATOM 1 N LEU 119 1.537 48.034 13.229 1.00 0.00 N ATOM 2 CA LEU 119 1.241 48.848 12.032 1.00 0.00 C ATOM 3 C LEU 119 2.544 49.342 11.516 1.00 0.00 C ATOM 4 O LEU 119 3.498 49.383 12.252 1.00 0.00 O ATOM 5 N ASN 120 2.625 49.718 10.263 1.00 0.00 N ATOM 6 CA ASN 120 3.863 50.311 9.818 1.00 0.00 C ATOM 7 C ASN 120 3.471 51.528 8.984 1.00 0.00 C ATOM 8 O ASN 120 2.332 51.693 8.510 1.00 0.00 O ATOM 9 N VAL 121 4.474 52.320 8.707 1.00 0.00 N ATOM 10 CA VAL 121 4.306 53.574 8.045 1.00 0.00 C ATOM 11 C VAL 121 4.429 53.452 6.504 1.00 0.00 C ATOM 12 O VAL 121 5.470 53.181 5.987 1.00 0.00 O ATOM 13 N LYS 122 3.332 53.644 5.788 1.00 0.00 N ATOM 14 CA LYS 122 3.309 53.688 4.354 1.00 0.00 C ATOM 15 C LYS 122 3.660 55.100 3.880 1.00 0.00 C ATOM 16 O LYS 122 2.855 56.023 3.913 1.00 0.00 O ATOM 17 N LEU 123 4.870 55.240 3.395 1.00 0.00 N ATOM 18 CA LEU 123 5.453 56.474 2.896 1.00 0.00 C ATOM 19 C LEU 123 4.695 57.093 1.723 1.00 0.00 C ATOM 20 O LEU 123 4.647 58.324 1.585 1.00 0.00 O ATOM 21 N LYS 124 4.099 56.266 0.870 1.00 0.00 N ATOM 22 CA LYS 124 3.382 56.809 -0.256 1.00 0.00 C ATOM 23 C LYS 124 1.984 57.300 0.149 1.00 0.00 C ATOM 24 O LYS 124 1.478 58.265 -0.393 1.00 0.00 O ATOM 25 N ASP 125 1.307 56.581 1.030 1.00 0.00 N ATOM 26 CA ASP 125 0.047 57.093 1.531 1.00 0.00 C ATOM 27 C ASP 125 0.199 58.110 2.697 1.00 0.00 C ATOM 28 O ASP 125 -0.747 58.785 3.003 1.00 0.00 O ATOM 29 N PHE 126 1.362 58.236 3.323 1.00 0.00 N ATOM 30 CA PHE 126 1.503 59.091 4.499 1.00 0.00 C ATOM 31 C PHE 126 0.625 58.712 5.707 1.00 0.00 C ATOM 32 O PHE 126 0.232 59.603 6.476 1.00 0.00 O ATOM 33 N ASN 127 0.271 57.421 5.841 1.00 0.00 N ATOM 34 CA ASN 127 -0.398 56.847 7.031 1.00 0.00 C ATOM 35 C ASN 127 0.238 55.570 7.558 1.00 0.00 C ATOM 36 O ASN 127 0.976 54.905 6.889 1.00 0.00 O ATOM 37 N PHE 128 -0.147 55.215 8.773 1.00 0.00 N ATOM 38 CA PHE 128 0.138 53.994 9.401 1.00 0.00 C ATOM 39 C PHE 128 -0.906 53.007 8.899 1.00 0.00 C ATOM 40 O PHE 128 -2.149 53.335 8.909 1.00 0.00 O ATOM 41 N GLY 129 -0.411 51.810 8.467 1.00 0.00 N ATOM 42 CA GLY 129 -1.238 50.737 7.851 1.00 0.00 C ATOM 43 C GLY 129 -0.825 49.348 8.382 1.00 0.00 C ATOM 44 O GLY 129 0.314 49.139 8.777 1.00 0.00 O ATOM 45 N GLY 130 -1.771 48.430 8.446 1.00 0.00 N ATOM 46 CA GLY 130 -1.514 47.053 8.828 1.00 0.00 C ATOM 47 C GLY 130 -1.176 46.226 7.582 1.00 0.00 C ATOM 48 O GLY 130 -0.990 46.749 6.458 1.00 0.00 O ATOM 49 N THR 131 -1.124 44.913 7.763 1.00 0.00 N ATOM 50 CA THR 131 -0.634 44.003 6.700 1.00 0.00 C ATOM 51 C THR 131 -1.628 42.830 6.655 1.00 0.00 C ATOM 52 O THR 131 -1.847 42.228 5.605 1.00 0.00 O ATOM 53 N ARG 132 -2.313 42.607 7.771 1.00 0.00 N ATOM 54 CA ARG 132 -3.364 41.649 7.891 1.00 0.00 C ATOM 55 C ARG 132 -4.782 42.268 7.883 1.00 0.00 C ATOM 56 O ARG 132 -4.989 43.362 8.339 1.00 0.00 O ATOM 57 N PHE 134 -5.758 41.530 7.402 1.00 0.00 N ATOM 58 CA PHE 134 -7.139 41.965 7.354 1.00 0.00 C ATOM 59 C PHE 134 -7.681 42.571 8.643 1.00 0.00 C ATOM 60 O PHE 134 -8.540 43.474 8.598 1.00 0.00 O ATOM 61 N LYS 135 -7.237 42.002 9.766 1.00 0.00 N ATOM 62 CA LYS 135 -7.768 42.317 11.099 1.00 0.00 C ATOM 63 C LYS 135 -7.099 43.578 11.704 1.00 0.00 C ATOM 64 O LYS 135 -7.526 44.089 12.695 1.00 0.00 O ATOM 65 N ASP 136 -6.010 44.023 11.102 1.00 0.00 N ATOM 66 CA ASP 136 -5.298 45.164 11.600 1.00 0.00 C ATOM 67 C ASP 136 -6.190 46.385 11.727 1.00 0.00 C ATOM 68 O ASP 136 -7.012 46.674 10.838 1.00 0.00 O ATOM 69 N MET 137 -6.018 47.101 12.845 1.00 0.00 N ATOM 70 CA MET 137 -6.816 48.304 13.056 1.00 0.00 C ATOM 71 C MET 137 -6.338 49.513 12.252 1.00 0.00 C ATOM 72 O MET 137 -5.162 49.834 12.217 1.00 0.00 O ATOM 73 N PRO 138 -7.279 50.184 11.582 1.00 0.00 N ATOM 74 CA PRO 138 -6.926 51.398 10.828 1.00 0.00 C ATOM 75 C PRO 138 -6.417 52.564 11.744 1.00 0.00 C ATOM 76 O PRO 138 -6.772 52.638 12.911 1.00 0.00 O ATOM 77 N PRO 139 -5.643 53.481 11.197 1.00 0.00 N ATOM 78 CA PRO 139 -5.082 54.623 11.923 1.00 0.00 C ATOM 79 C PRO 139 -6.244 55.476 12.552 1.00 0.00 C ATOM 80 O PRO 139 -6.195 55.834 13.742 1.00 0.00 O ATOM 81 N GLU 140 -7.313 55.684 11.781 1.00 0.00 N ATOM 82 CA GLU 140 -8.425 56.582 12.120 1.00 0.00 C ATOM 83 C GLU 140 -9.085 56.021 13.341 1.00 0.00 C ATOM 84 O GLU 140 -9.395 56.804 14.239 1.00 0.00 O ATOM 85 N GLU 141 -9.244 54.667 13.383 1.00 0.00 N ATOM 86 CA GLU 141 -9.838 53.973 14.494 1.00 0.00 C ATOM 87 C GLU 141 -8.973 54.058 15.693 1.00 0.00 C ATOM 88 O GLU 141 -9.473 54.273 16.792 1.00 0.00 O ATOM 89 N LYS 142 -7.676 53.911 15.537 1.00 0.00 N ATOM 90 CA LYS 142 -6.788 54.028 16.717 1.00 0.00 C ATOM 91 C LYS 142 -6.801 55.463 17.255 1.00 0.00 C ATOM 92 O LYS 142 -6.810 55.714 18.482 1.00 0.00 O ATOM 93 N LYS 143 -6.677 56.401 16.319 1.00 0.00 N ATOM 94 CA LYS 143 -6.714 57.799 16.672 1.00 0.00 C ATOM 95 C LYS 143 -8.011 58.095 17.460 1.00 0.00 C ATOM 96 O LYS 143 -7.960 58.605 18.579 1.00 0.00 O ATOM 97 N ARG 144 -9.160 57.717 16.877 1.00 0.00 N ATOM 98 CA ARG 144 -10.478 57.933 17.479 1.00 0.00 C ATOM 99 C ARG 144 -10.666 57.291 18.857 1.00 0.00 C ATOM 100 O ARG 144 -11.224 57.958 19.758 1.00 0.00 O ATOM 101 N ARG 145 -10.159 56.061 19.046 1.00 0.00 N ATOM 102 CA ARG 145 -10.161 55.419 20.386 1.00 0.00 C ATOM 103 C ARG 145 -9.312 56.081 21.471 1.00 0.00 C ATOM 104 O ARG 145 -9.688 56.065 22.662 1.00 0.00 O ATOM 105 N MET 146 -8.181 56.636 21.078 1.00 0.00 N ATOM 106 CA MET 146 -7.355 57.314 21.994 1.00 0.00 C ATOM 107 C MET 146 -7.910 58.720 22.261 1.00 0.00 C ATOM 108 O MET 146 -7.861 59.142 23.388 1.00 0.00 O ATOM 109 N GLU 147 -8.455 59.406 21.251 1.00 0.00 N ATOM 110 CA GLU 147 -9.022 60.729 21.436 1.00 0.00 C ATOM 111 C GLU 147 -10.143 60.681 22.468 1.00 0.00 C ATOM 112 O GLU 147 -10.183 61.434 23.443 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 84 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.86 35.0 20 6.7 297 ARMSMC SECONDARY STRUCTURE . . 94.17 35.3 17 8.7 195 ARMSMC SURFACE . . . . . . . . 92.07 30.8 13 7.2 181 ARMSMC BURIED . . . . . . . . 79.44 42.9 7 6.0 116 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 128 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 120 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 81 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 78 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 110 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 81 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 71 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.93 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.93 21 13.9 151 CRMSCA CRN = ALL/NP . . . . . 0.2825 CRMSCA SECONDARY STRUCTURE . . 5.55 17 17.2 99 CRMSCA SURFACE . . . . . . . . 5.81 17 18.5 92 CRMSCA BURIED . . . . . . . . 6.44 4 6.8 59 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.65 84 11.2 750 CRMSMC SECONDARY STRUCTURE . . 5.29 68 13.8 492 CRMSMC SURFACE . . . . . . . . 5.54 68 14.9 456 CRMSMC BURIED . . . . . . . . 6.13 16 5.4 294 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 644 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 546 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 429 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 377 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 267 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.65 84 6.7 1248 CRMSALL SECONDARY STRUCTURE . . 5.29 68 8.2 825 CRMSALL SURFACE . . . . . . . . 5.54 68 9.1 745 CRMSALL BURIED . . . . . . . . 6.13 16 3.2 503 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.519 1.000 0.500 21 13.9 151 ERRCA SECONDARY STRUCTURE . . 5.133 1.000 0.500 17 17.2 99 ERRCA SURFACE . . . . . . . . 5.439 1.000 0.500 17 18.5 92 ERRCA BURIED . . . . . . . . 5.858 1.000 0.500 4 6.8 59 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.221 1.000 0.500 84 11.2 750 ERRMC SECONDARY STRUCTURE . . 4.838 1.000 0.500 68 13.8 492 ERRMC SURFACE . . . . . . . . 5.150 1.000 0.500 68 14.9 456 ERRMC BURIED . . . . . . . . 5.519 1.000 0.500 16 5.4 294 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 644 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 546 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 429 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 377 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 267 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.221 1.000 0.500 84 6.7 1248 ERRALL SECONDARY STRUCTURE . . 4.838 1.000 0.500 68 8.2 825 ERRALL SURFACE . . . . . . . . 5.150 1.000 0.500 68 9.1 745 ERRALL BURIED . . . . . . . . 5.519 1.000 0.500 16 3.2 503 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 11 20 21 151 DISTCA CA (P) 0.00 0.00 1.32 7.28 13.25 151 DISTCA CA (RMS) 0.00 0.00 2.52 3.99 5.62 DISTCA ALL (N) 1 3 13 47 82 84 1248 DISTALL ALL (P) 0.08 0.24 1.04 3.77 6.57 1248 DISTALL ALL (RMS) 0.90 1.34 2.27 3.84 5.46 DISTALL END of the results output