####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 42 ( 327), selected 42 , name T0560TS296_1-D1 # Molecule2: number of CA atoms 64 ( 1008), selected 42 , name T0560-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0560TS296_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 12 - 53 1.54 1.54 LCS_AVERAGE: 65.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 12 - 53 1.54 1.54 LCS_AVERAGE: 65.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 19 - 48 0.99 1.69 LONGEST_CONTINUOUS_SEGMENT: 30 20 - 49 0.99 1.68 LCS_AVERAGE: 43.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 42 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 12 K 12 17 42 42 7 13 28 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT V 13 V 13 17 42 42 7 19 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT W 14 W 14 17 42 42 7 15 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT H 15 H 15 17 42 42 7 15 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT A 16 A 16 17 42 42 7 19 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT L 17 L 17 29 42 42 7 21 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT N 18 N 18 29 42 42 7 19 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT E 19 E 19 30 42 42 4 19 32 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT A 20 A 20 30 42 42 4 19 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT D 21 D 21 30 42 42 5 19 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT G 22 G 22 30 42 42 3 21 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT I 23 I 23 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT S 24 S 24 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT I 25 I 25 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT P 26 P 26 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT E 27 E 27 30 42 42 14 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT L 28 L 28 30 42 42 6 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT A 29 A 29 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT R 30 R 30 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT K 31 K 31 30 42 42 17 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT V 32 V 32 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT N 33 N 33 30 42 42 8 19 29 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT L 34 L 34 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT S 35 S 35 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT V 36 V 36 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT E 37 E 37 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT S 38 S 38 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT T 39 T 39 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT A 40 A 40 30 42 42 17 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT L 41 L 41 30 42 42 14 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT A 42 A 42 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT V 43 V 43 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT G 44 G 44 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT W 45 W 45 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT L 46 L 46 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT A 47 A 47 30 42 42 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT R 48 R 48 30 42 42 3 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT E 49 E 49 30 42 42 4 13 27 35 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT N 50 N 50 29 42 42 3 5 11 24 30 36 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT K 51 K 51 29 42 42 3 18 28 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT V 52 V 52 28 42 42 3 13 28 36 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_GDT V 53 V 53 9 42 42 3 9 18 30 32 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 LCS_AVERAGE LCS_A: 58.23 ( 43.45 65.62 65.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 19 25 33 37 40 41 42 42 42 42 42 42 42 42 42 42 42 42 42 42 GDT PERCENT_AT 29.69 39.06 51.56 57.81 62.50 64.06 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 65.62 GDT RMS_LOCAL 0.36 0.47 0.99 1.12 1.32 1.42 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 GDT RMS_ALL_AT 1.96 1.93 1.70 1.71 1.58 1.55 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 1.54 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: E 27 E 27 # possible swapping detected: E 49 E 49 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 12 K 12 2.208 0 0.109 0.818 5.449 68.810 56.296 LGA V 13 V 13 1.171 0 0.072 1.175 3.355 81.429 75.714 LGA W 14 W 14 1.255 0 0.060 0.110 2.655 81.429 70.170 LGA H 15 H 15 1.754 0 0.068 0.355 4.019 72.857 60.857 LGA A 16 A 16 1.332 0 0.118 0.114 1.419 81.429 81.429 LGA L 17 L 17 1.055 0 0.067 0.116 1.562 81.548 86.012 LGA N 18 N 18 1.968 0 0.095 1.075 4.914 69.048 63.869 LGA E 19 E 19 1.969 0 0.059 0.447 2.909 70.833 68.413 LGA A 20 A 20 1.544 0 0.048 0.046 1.912 77.143 76.286 LGA D 21 D 21 1.392 0 0.155 1.083 2.121 81.429 78.333 LGA G 22 G 22 1.419 0 0.112 0.112 1.741 79.286 79.286 LGA I 23 I 23 1.309 0 0.079 0.117 1.905 81.429 80.417 LGA S 24 S 24 1.650 0 0.056 0.591 4.130 77.143 68.413 LGA I 25 I 25 0.976 0 0.112 0.624 1.718 88.214 86.012 LGA P 26 P 26 0.927 0 0.080 0.349 1.489 90.476 87.891 LGA E 27 E 27 1.406 0 0.050 1.061 5.258 79.286 63.069 LGA L 28 L 28 1.410 0 0.043 0.097 1.904 79.286 77.143 LGA A 29 A 29 0.968 0 0.101 0.100 0.999 90.476 90.476 LGA R 30 R 30 1.244 0 0.075 1.583 9.102 79.286 51.385 LGA K 31 K 31 1.483 0 0.047 0.704 2.501 79.286 74.021 LGA V 32 V 32 1.478 0 0.745 0.642 2.469 77.262 76.599 LGA N 33 N 33 2.233 0 0.227 0.970 6.690 64.881 49.821 LGA L 34 L 34 1.045 0 0.064 0.095 1.702 85.952 84.881 LGA S 35 S 35 0.721 0 0.111 0.671 2.754 92.857 85.000 LGA V 36 V 36 0.594 0 0.074 0.089 1.098 92.857 90.544 LGA E 37 E 37 0.879 0 0.055 0.294 1.970 90.476 84.497 LGA S 38 S 38 0.742 0 0.082 0.712 2.836 88.214 83.413 LGA T 39 T 39 0.296 0 0.043 1.090 2.356 100.000 89.932 LGA A 40 A 40 0.335 0 0.060 0.055 0.366 100.000 100.000 LGA L 41 L 41 0.381 0 0.080 1.266 2.789 95.238 86.905 LGA A 42 A 42 0.553 0 0.050 0.046 0.874 92.857 94.286 LGA V 43 V 43 0.542 0 0.064 0.057 0.673 90.476 91.837 LGA G 44 G 44 1.115 0 0.078 0.078 1.378 83.690 83.690 LGA W 45 W 45 1.099 0 0.088 1.615 6.055 83.690 64.558 LGA L 46 L 46 0.408 0 0.050 0.127 0.637 97.619 98.810 LGA A 47 A 47 1.065 0 0.118 0.116 1.518 83.690 81.524 LGA R 48 R 48 1.702 0 0.062 0.933 8.167 79.286 49.654 LGA E 49 E 49 2.103 0 0.712 1.082 5.575 64.881 51.376 LGA N 50 N 50 3.861 0 0.334 1.246 7.634 40.714 29.881 LGA K 51 K 51 1.876 0 0.459 0.887 3.286 63.095 71.376 LGA V 52 V 52 2.227 0 0.049 0.064 2.394 66.786 67.075 LGA V 53 V 53 3.279 0 0.542 1.322 7.466 33.571 44.898 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 42 168 168 100.00 323 323 100.00 64 SUMMARY(RMSD_GDC): 1.538 1.687 2.387 52.472 49.001 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 42 64 4.0 42 1.54 57.031 61.630 2.564 LGA_LOCAL RMSD: 1.538 Number of atoms: 42 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.538 Number of assigned atoms: 42 Std_ASGN_ATOMS RMSD: 1.538 Standard rmsd on all 42 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.805015 * X + 0.414304 * Y + -0.424621 * Z + 13.025646 Y_new = 0.507954 * X + 0.851124 * Y + -0.132556 * Z + -42.348137 Z_new = 0.306487 * X + -0.322397 * Y + -0.895615 * Z + 29.238623 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.578700 -0.311500 -2.796061 [DEG: 147.7486 -17.8477 -160.2025 ] ZXZ: -1.268209 2.680608 2.381488 [DEG: -72.6630 153.5875 136.4492 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0560TS296_1-D1 REMARK 2: T0560-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0560TS296_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 42 64 4.0 42 1.54 61.630 1.54 REMARK ---------------------------------------------------------- MOLECULE T0560TS296_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0560 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N LYS 12 -13.205 3.754 7.083 1.00 1.00 N ATOM 2 CA LYS 12 -14.095 2.619 6.748 1.00 1.00 C ATOM 3 C LYS 12 -13.254 1.406 6.534 1.00 1.00 C ATOM 4 O LYS 12 -13.726 0.275 6.642 1.00 1.00 O ATOM 5 H1 LYS 12 -13.554 4.568 7.244 1.00 1.00 H ATOM 6 H2 LYS 12 -12.572 4.016 6.499 1.00 1.00 H ATOM 7 H3 LYS 12 -12.676 3.712 7.810 1.00 1.00 H ATOM 8 CB LYS 12 -14.936 2.944 5.512 1.00 1.00 C ATOM 9 CD LYS 12 -16.779 4.294 4.475 1.00 1.00 C ATOM 10 CE LYS 12 -17.847 5.351 4.710 1.00 1.00 C ATOM 11 CG LYS 12 -15.988 4.017 5.741 1.00 1.00 C ATOM 15 NZ LYS 12 -18.606 5.660 3.467 1.00 1.00 N ATOM 16 N VAL 13 -11.961 1.632 6.238 1.00 1.00 N ATOM 17 CA VAL 13 -11.044 0.566 5.961 1.00 1.00 C ATOM 18 C VAL 13 -10.943 -0.344 7.143 1.00 1.00 C ATOM 19 O VAL 13 -11.053 -1.560 7.004 1.00 1.00 O ATOM 21 CB VAL 13 -9.652 1.103 5.579 1.00 1.00 C ATOM 22 CG1 VAL 13 -8.645 -0.033 5.501 1.00 1.00 C ATOM 23 CG2 VAL 13 -9.716 1.855 4.257 1.00 1.00 C ATOM 24 N TRP 14 -10.746 0.212 8.349 1.00 1.00 N ATOM 25 CA TRP 14 -10.587 -0.651 9.485 1.00 1.00 C ATOM 26 C TRP 14 -11.848 -1.406 9.718 1.00 1.00 C ATOM 27 O TRP 14 -11.822 -2.590 10.049 1.00 1.00 O ATOM 29 CB TRP 14 -10.198 0.158 10.724 1.00 1.00 C ATOM 32 CG TRP 14 -9.993 -0.680 11.947 1.00 1.00 C ATOM 33 CD1 TRP 14 -8.834 -1.287 12.341 1.00 1.00 C ATOM 35 NE1 TRP 14 -9.033 -1.970 13.516 1.00 1.00 N ATOM 36 CD2 TRP 14 -10.974 -1.006 12.940 1.00 1.00 C ATOM 37 CE2 TRP 14 -10.340 -1.811 13.903 1.00 1.00 C ATOM 38 CH2 TRP 14 -12.333 -1.989 15.158 1.00 1.00 H ATOM 39 CZ2 TRP 14 -11.012 -2.309 15.019 1.00 1.00 C ATOM 40 CE3 TRP 14 -12.326 -0.694 13.107 1.00 1.00 C ATOM 41 CZ3 TRP 14 -12.988 -1.190 14.214 1.00 1.00 C ATOM 42 N HIS 15 -12.992 -0.731 9.542 1.00 1.00 N ATOM 43 CA HIS 15 -14.253 -1.339 9.827 1.00 1.00 C ATOM 44 C HIS 15 -14.410 -2.541 8.949 1.00 1.00 C ATOM 45 O HIS 15 -14.796 -3.612 9.417 1.00 1.00 O ATOM 47 CB HIS 15 -15.391 -0.339 9.615 1.00 1.00 C ATOM 48 CG HIS 15 -16.750 -0.900 9.895 1.00 1.00 C ATOM 49 ND1 HIS 15 -17.202 -1.149 11.173 1.00 1.00 N ATOM 50 CE1 HIS 15 -18.450 -1.647 11.106 1.00 1.00 C ATOM 51 CD2 HIS 15 -17.889 -1.314 9.089 1.00 1.00 C ATOM 53 NE2 HIS 15 -18.868 -1.749 9.859 1.00 1.00 N ATOM 54 N ALA 16 -14.092 -2.400 7.649 1.00 1.00 N ATOM 55 CA ALA 16 -14.250 -3.487 6.724 1.00 1.00 C ATOM 56 C ALA 16 -13.343 -4.611 7.110 1.00 1.00 C ATOM 57 O ALA 16 -13.726 -5.779 7.042 1.00 1.00 O ATOM 59 CB ALA 16 -13.964 -3.021 5.304 1.00 1.00 C ATOM 60 N LEU 17 -12.103 -4.291 7.519 1.00 1.00 N ATOM 61 CA LEU 17 -11.167 -5.323 7.862 1.00 1.00 C ATOM 62 C LEU 17 -11.662 -6.070 9.063 1.00 1.00 C ATOM 63 O LEU 17 -11.536 -7.291 9.134 1.00 1.00 O ATOM 65 CB LEU 17 -9.783 -4.727 8.121 1.00 1.00 C ATOM 66 CG LEU 17 -9.050 -4.161 6.904 1.00 1.00 C ATOM 67 CD1 LEU 17 -7.778 -3.442 7.328 1.00 1.00 C ATOM 68 CD2 LEU 17 -8.726 -5.265 5.909 1.00 1.00 C ATOM 69 N ASN 18 -12.243 -5.363 10.051 1.00 1.00 N ATOM 70 CA ASN 18 -12.695 -6.056 11.221 1.00 1.00 C ATOM 71 C ASN 18 -13.734 -7.047 10.800 1.00 1.00 C ATOM 72 O ASN 18 -13.689 -8.211 11.198 1.00 1.00 O ATOM 74 CB ASN 18 -13.224 -5.064 12.259 1.00 1.00 C ATOM 75 CG ASN 18 -13.621 -5.737 13.558 1.00 1.00 C ATOM 76 OD1 ASN 18 -12.788 -6.330 14.242 1.00 1.00 O ATOM 79 ND2 ASN 18 -14.901 -5.646 13.903 1.00 1.00 N ATOM 80 N GLU 19 -14.697 -6.615 9.964 1.00 1.00 N ATOM 81 CA GLU 19 -15.715 -7.532 9.549 1.00 1.00 C ATOM 82 C GLU 19 -15.065 -8.645 8.805 1.00 1.00 C ATOM 83 O GLU 19 -15.251 -9.815 9.135 1.00 1.00 O ATOM 85 CB GLU 19 -16.763 -6.819 8.693 1.00 1.00 C ATOM 86 CD GLU 19 -18.939 -6.965 7.418 1.00 1.00 C ATOM 87 CG GLU 19 -17.905 -7.713 8.237 1.00 1.00 C ATOM 88 OE1 GLU 19 -18.750 -5.752 7.188 1.00 1.00 O ATOM 89 OE2 GLU 19 -19.937 -7.593 7.007 1.00 1.00 O ATOM 90 N ALA 20 -14.255 -8.316 7.780 1.00 1.00 N ATOM 91 CA ALA 20 -13.660 -9.406 7.073 1.00 1.00 C ATOM 92 C ALA 20 -12.211 -9.137 6.885 1.00 1.00 C ATOM 93 O ALA 20 -11.809 -8.190 6.207 1.00 1.00 O ATOM 95 CB ALA 20 -14.356 -9.616 5.737 1.00 1.00 C ATOM 96 N ASP 21 -11.381 -10.015 7.467 1.00 1.00 N ATOM 97 CA ASP 21 -9.974 -9.918 7.277 1.00 1.00 C ATOM 98 C ASP 21 -9.772 -10.653 6.002 1.00 1.00 C ATOM 99 O ASP 21 -10.524 -11.577 5.699 1.00 1.00 O ATOM 101 CB ASP 21 -9.229 -10.507 8.477 1.00 1.00 C ATOM 102 CG ASP 21 -9.373 -9.660 9.726 1.00 1.00 C ATOM 103 OD1 ASP 21 -9.333 -8.417 9.609 1.00 1.00 O ATOM 104 OD2 ASP 21 -9.528 -10.238 10.822 1.00 1.00 O ATOM 105 N GLY 22 -8.787 -10.254 5.186 1.00 1.00 N ATOM 106 CA GLY 22 -8.599 -10.998 3.977 1.00 1.00 C ATOM 107 C GLY 22 -9.426 -10.377 2.901 1.00 1.00 C ATOM 108 O GLY 22 -9.496 -10.890 1.785 1.00 1.00 O ATOM 110 N ILE 23 -10.075 -9.239 3.209 1.00 1.00 N ATOM 111 CA ILE 23 -10.863 -8.576 2.218 1.00 1.00 C ATOM 112 C ILE 23 -9.922 -8.160 1.140 1.00 1.00 C ATOM 113 O ILE 23 -8.837 -7.652 1.412 1.00 1.00 O ATOM 115 CB ILE 23 -11.634 -7.384 2.816 1.00 1.00 C ATOM 116 CD1 ILE 23 -13.641 -5.867 2.405 1.00 1.00 C ATOM 117 CG1 ILE 23 -12.662 -6.858 1.813 1.00 1.00 C ATOM 118 CG2 ILE 23 -10.669 -6.296 3.261 1.00 1.00 C ATOM 119 N SER 24 -10.309 -8.406 -0.124 1.00 1.00 N ATOM 120 CA SER 24 -9.446 -8.085 -1.221 1.00 1.00 C ATOM 121 C SER 24 -9.375 -6.603 -1.372 1.00 1.00 C ATOM 122 O SER 24 -10.304 -5.872 -1.034 1.00 1.00 O ATOM 124 CB SER 24 -9.946 -8.746 -2.507 1.00 1.00 C ATOM 126 OG SER 24 -11.187 -8.198 -2.914 1.00 1.00 O ATOM 127 N ILE 25 -8.239 -6.123 -1.909 1.00 1.00 N ATOM 128 CA ILE 25 -8.051 -4.718 -2.088 1.00 1.00 C ATOM 129 C ILE 25 -9.093 -4.198 -3.045 1.00 1.00 C ATOM 130 O ILE 25 -9.560 -3.080 -2.828 1.00 1.00 O ATOM 132 CB ILE 25 -6.632 -4.399 -2.593 1.00 1.00 C ATOM 133 CD1 ILE 25 -4.168 -4.693 -2.004 1.00 1.00 C ATOM 134 CG1 ILE 25 -5.598 -4.707 -1.507 1.00 1.00 C ATOM 135 CG2 ILE 25 -6.546 -2.955 -3.064 1.00 1.00 C ATOM 136 N PRO 26 -9.519 -4.883 -4.093 1.00 1.00 N ATOM 137 CA PRO 26 -10.532 -4.324 -4.943 1.00 1.00 C ATOM 138 C PRO 26 -11.823 -4.156 -4.212 1.00 1.00 C ATOM 139 O PRO 26 -12.544 -3.201 -4.498 1.00 1.00 O ATOM 140 CB PRO 26 -10.662 -5.339 -6.081 1.00 1.00 C ATOM 141 CD PRO 26 -8.874 -6.128 -4.698 1.00 1.00 C ATOM 142 CG PRO 26 -9.337 -6.024 -6.124 1.00 1.00 C ATOM 143 N GLU 27 -12.139 -5.077 -3.281 1.00 1.00 N ATOM 144 CA GLU 27 -13.376 -4.994 -2.563 1.00 1.00 C ATOM 145 C GLU 27 -13.352 -3.756 -1.738 1.00 1.00 C ATOM 146 O GLU 27 -14.316 -2.992 -1.722 1.00 1.00 O ATOM 148 CB GLU 27 -13.580 -6.242 -1.702 1.00 1.00 C ATOM 149 CD GLU 27 -13.973 -8.736 -1.619 1.00 1.00 C ATOM 150 CG GLU 27 -13.873 -7.504 -2.497 1.00 1.00 C ATOM 151 OE1 GLU 27 -12.936 -9.154 -1.061 1.00 1.00 O ATOM 152 OE2 GLU 27 -15.088 -9.284 -1.489 1.00 1.00 O ATOM 153 N LEU 28 -12.226 -3.522 -1.039 1.00 1.00 N ATOM 154 CA LEU 28 -12.124 -2.361 -0.204 1.00 1.00 C ATOM 155 C LEU 28 -12.170 -1.122 -1.042 1.00 1.00 C ATOM 156 O LEU 28 -12.805 -0.139 -0.665 1.00 1.00 O ATOM 158 CB LEU 28 -10.837 -2.406 0.623 1.00 1.00 C ATOM 159 CG LEU 28 -10.603 -1.233 1.576 1.00 1.00 C ATOM 160 CD1 LEU 28 -11.722 -1.141 2.601 1.00 1.00 C ATOM 161 CD2 LEU 28 -9.257 -1.367 2.272 1.00 1.00 C ATOM 162 N ALA 29 -11.514 -1.139 -2.218 1.00 1.00 N ATOM 163 CA ALA 29 -11.461 0.061 -3.011 1.00 1.00 C ATOM 164 C ALA 29 -12.847 0.486 -3.378 1.00 1.00 C ATOM 165 O ALA 29 -13.174 1.673 -3.307 1.00 1.00 O ATOM 167 CB ALA 29 -10.615 -0.163 -4.255 1.00 1.00 C ATOM 168 N ARG 30 -13.699 -0.476 -3.774 1.00 1.00 N ATOM 169 CA ARG 30 -15.033 -0.151 -4.191 1.00 1.00 C ATOM 170 C ARG 30 -15.809 0.432 -3.045 1.00 1.00 C ATOM 171 O ARG 30 -16.496 1.441 -3.204 1.00 1.00 O ATOM 173 CB ARG 30 -15.739 -1.391 -4.742 1.00 1.00 C ATOM 174 CD ARG 30 -17.832 -2.420 -5.669 1.00 1.00 C ATOM 176 NE ARG 30 -18.007 -3.346 -4.552 1.00 1.00 N ATOM 177 CG ARG 30 -17.152 -1.131 -5.239 1.00 1.00 C ATOM 178 CZ ARG 30 -18.954 -3.229 -3.626 1.00 1.00 C ATOM 181 NH1 ARG 30 -19.037 -4.119 -2.647 1.00 1.00 H ATOM 184 NH2 ARG 30 -19.816 -2.223 -3.682 1.00 1.00 H ATOM 185 N LYS 31 -15.722 -0.186 -1.851 1.00 1.00 N ATOM 186 CA LYS 31 -16.500 0.291 -0.742 1.00 1.00 C ATOM 187 C LYS 31 -16.033 1.650 -0.352 1.00 1.00 C ATOM 188 O LYS 31 -16.837 2.535 -0.062 1.00 1.00 O ATOM 190 CB LYS 31 -16.402 -0.679 0.438 1.00 1.00 C ATOM 191 CD LYS 31 -16.966 -2.920 1.417 1.00 1.00 C ATOM 192 CE LYS 31 -17.680 -4.243 1.194 1.00 1.00 C ATOM 193 CG LYS 31 -17.114 -2.003 0.214 1.00 1.00 C ATOM 197 NZ LYS 31 -17.508 -5.168 2.347 1.00 1.00 N ATOM 198 N VAL 32 -14.710 1.860 -0.340 1.00 1.00 N ATOM 199 CA VAL 32 -14.236 3.181 -0.072 1.00 1.00 C ATOM 200 C VAL 32 -14.410 3.835 -1.393 1.00 1.00 C ATOM 201 O VAL 32 -14.922 3.220 -2.318 1.00 1.00 O ATOM 203 CB VAL 32 -12.789 3.165 0.455 1.00 1.00 C ATOM 204 CG1 VAL 32 -12.706 2.389 1.760 1.00 1.00 C ATOM 205 CG2 VAL 32 -11.851 2.570 -0.583 1.00 1.00 C ATOM 206 N ASN 33 -14.125 5.121 -1.543 1.00 1.00 N ATOM 207 CA ASN 33 -14.225 5.593 -2.891 1.00 1.00 C ATOM 208 C ASN 33 -12.818 5.794 -3.341 1.00 1.00 C ATOM 209 O ASN 33 -12.344 6.920 -3.493 1.00 1.00 O ATOM 211 CB ASN 33 -15.080 6.861 -2.952 1.00 1.00 C ATOM 212 CG ASN 33 -15.354 7.310 -4.374 1.00 1.00 C ATOM 213 OD1 ASN 33 -15.337 6.503 -5.304 1.00 1.00 O ATOM 216 ND2 ASN 33 -15.607 8.602 -4.547 1.00 1.00 N ATOM 217 N LEU 34 -12.103 4.684 -3.601 1.00 1.00 N ATOM 218 CA LEU 34 -10.710 4.854 -3.876 1.00 1.00 C ATOM 219 C LEU 34 -10.285 3.906 -4.944 1.00 1.00 C ATOM 220 O LEU 34 -11.027 3.005 -5.330 1.00 1.00 O ATOM 222 CB LEU 34 -9.884 4.645 -2.606 1.00 1.00 C ATOM 223 CG LEU 34 -10.162 5.608 -1.450 1.00 1.00 C ATOM 224 CD1 LEU 34 -9.412 5.177 -0.198 1.00 1.00 C ATOM 225 CD2 LEU 34 -9.781 7.030 -1.831 1.00 1.00 C ATOM 226 N SER 35 -9.065 4.132 -5.466 1.00 1.00 N ATOM 227 CA SER 35 -8.478 3.244 -6.423 1.00 1.00 C ATOM 228 C SER 35 -7.825 2.163 -5.623 1.00 1.00 C ATOM 229 O SER 35 -7.661 2.294 -4.411 1.00 1.00 O ATOM 231 CB SER 35 -7.497 3.998 -7.322 1.00 1.00 C ATOM 233 OG SER 35 -6.357 4.420 -6.593 1.00 1.00 O ATOM 234 N VAL 36 -7.457 1.049 -6.282 1.00 1.00 N ATOM 235 CA VAL 36 -6.841 -0.056 -5.608 1.00 1.00 C ATOM 236 C VAL 36 -5.511 0.387 -5.078 1.00 1.00 C ATOM 237 O VAL 36 -5.112 0.019 -3.974 1.00 1.00 O ATOM 239 CB VAL 36 -6.689 -1.272 -6.541 1.00 1.00 C ATOM 240 CG1 VAL 36 -5.848 -2.351 -5.876 1.00 1.00 C ATOM 241 CG2 VAL 36 -8.054 -1.819 -6.929 1.00 1.00 C ATOM 242 N GLU 37 -4.787 1.201 -5.868 1.00 1.00 N ATOM 243 CA GLU 37 -3.479 1.647 -5.487 1.00 1.00 C ATOM 244 C GLU 37 -3.587 2.494 -4.256 1.00 1.00 C ATOM 245 O GLU 37 -2.765 2.378 -3.348 1.00 1.00 O ATOM 247 CB GLU 37 -2.822 2.421 -6.632 1.00 1.00 C ATOM 248 CD GLU 37 -1.850 2.366 -8.962 1.00 1.00 C ATOM 249 CG GLU 37 -2.426 1.556 -7.818 1.00 1.00 C ATOM 250 OE1 GLU 37 -1.933 3.611 -8.910 1.00 1.00 O ATOM 251 OE2 GLU 37 -1.315 1.756 -9.912 1.00 1.00 O ATOM 252 N SER 38 -4.611 3.368 -4.192 1.00 1.00 N ATOM 253 CA SER 38 -4.803 4.253 -3.074 1.00 1.00 C ATOM 254 C SER 38 -5.095 3.453 -1.843 1.00 1.00 C ATOM 255 O SER 38 -4.518 3.689 -0.780 1.00 1.00 O ATOM 257 CB SER 38 -5.934 5.243 -3.362 1.00 1.00 C ATOM 259 OG SER 38 -5.586 6.120 -4.419 1.00 1.00 O ATOM 260 N THR 39 -6.001 2.467 -1.964 1.00 1.00 N ATOM 261 CA THR 39 -6.408 1.684 -0.835 1.00 1.00 C ATOM 262 C THR 39 -5.220 0.951 -0.290 1.00 1.00 C ATOM 263 O THR 39 -5.007 0.905 0.920 1.00 1.00 O ATOM 265 CB THR 39 -7.525 0.692 -1.210 1.00 1.00 C ATOM 267 OG1 THR 39 -7.064 -0.180 -2.250 1.00 1.00 O ATOM 268 CG2 THR 39 -8.753 1.437 -1.709 1.00 1.00 C ATOM 269 N ALA 40 -4.380 0.392 -1.176 1.00 1.00 N ATOM 270 CA ALA 40 -3.243 -0.350 -0.718 1.00 1.00 C ATOM 271 C ALA 40 -2.386 0.577 0.089 1.00 1.00 C ATOM 272 O ALA 40 -1.820 0.184 1.109 1.00 1.00 O ATOM 274 CB ALA 40 -2.486 -0.941 -1.897 1.00 1.00 C ATOM 275 N LEU 41 -2.267 1.840 -0.359 1.00 1.00 N ATOM 276 CA LEU 41 -1.434 2.801 0.307 1.00 1.00 C ATOM 277 C LEU 41 -1.957 3.056 1.688 1.00 1.00 C ATOM 278 O LEU 41 -1.198 3.059 2.653 1.00 1.00 O ATOM 280 CB LEU 41 -1.369 4.101 -0.497 1.00 1.00 C ATOM 281 CG LEU 41 -0.548 5.237 0.118 1.00 1.00 C ATOM 282 CD1 LEU 41 0.907 4.825 0.276 1.00 1.00 C ATOM 283 CD2 LEU 41 -0.653 6.496 -0.731 1.00 1.00 C ATOM 284 N ALA 42 -3.281 3.261 1.827 1.00 1.00 N ATOM 285 CA ALA 42 -3.846 3.580 3.109 1.00 1.00 C ATOM 286 C ALA 42 -3.639 2.434 4.049 1.00 1.00 C ATOM 287 O ALA 42 -3.244 2.622 5.199 1.00 1.00 O ATOM 289 CB ALA 42 -5.325 3.907 2.970 1.00 1.00 C ATOM 290 N VAL 43 -3.862 1.201 3.560 1.00 1.00 N ATOM 291 CA VAL 43 -3.758 0.027 4.378 1.00 1.00 C ATOM 292 C VAL 43 -2.361 -0.071 4.894 1.00 1.00 C ATOM 293 O VAL 43 -2.144 -0.485 6.030 1.00 1.00 O ATOM 295 CB VAL 43 -4.152 -1.241 3.598 1.00 1.00 C ATOM 296 CG1 VAL 43 -3.834 -2.487 4.410 1.00 1.00 C ATOM 297 CG2 VAL 43 -5.628 -1.202 3.230 1.00 1.00 C ATOM 298 N GLY 44 -1.373 0.309 4.065 1.00 1.00 N ATOM 299 CA GLY 44 -0.004 0.247 4.484 1.00 1.00 C ATOM 300 C GLY 44 0.176 1.146 5.669 1.00 1.00 C ATOM 301 O GLY 44 0.906 0.809 6.600 1.00 1.00 O ATOM 303 N TRP 45 -0.476 2.326 5.663 1.00 1.00 N ATOM 304 CA TRP 45 -0.337 3.244 6.759 1.00 1.00 C ATOM 305 C TRP 45 -0.869 2.604 8.001 1.00 1.00 C ATOM 306 O TRP 45 -0.253 2.699 9.062 1.00 1.00 O ATOM 308 CB TRP 45 -1.066 4.555 6.456 1.00 1.00 C ATOM 311 CG TRP 45 -0.947 5.574 7.547 1.00 1.00 C ATOM 312 CD1 TRP 45 0.044 6.501 7.699 1.00 1.00 C ATOM 314 NE1 TRP 45 -0.187 7.261 8.819 1.00 1.00 N ATOM 315 CD2 TRP 45 -1.852 5.769 8.641 1.00 1.00 C ATOM 316 CE2 TRP 45 -1.346 6.830 9.414 1.00 1.00 C ATOM 317 CH2 TRP 45 -3.147 6.665 10.932 1.00 1.00 H ATOM 318 CZ2 TRP 45 -1.987 7.288 10.565 1.00 1.00 C ATOM 319 CE3 TRP 45 -3.040 5.151 9.041 1.00 1.00 C ATOM 320 CZ3 TRP 45 -3.672 5.607 10.182 1.00 1.00 C ATOM 321 N LEU 46 -2.024 1.917 7.908 1.00 1.00 N ATOM 322 CA LEU 46 -2.572 1.309 9.087 1.00 1.00 C ATOM 323 C LEU 46 -1.586 0.317 9.618 1.00 1.00 C ATOM 324 O LEU 46 -1.353 0.244 10.824 1.00 1.00 O ATOM 326 CB LEU 46 -3.915 0.647 8.774 1.00 1.00 C ATOM 327 CG LEU 46 -5.076 1.589 8.451 1.00 1.00 C ATOM 328 CD1 LEU 46 -6.293 0.803 7.984 1.00 1.00 C ATOM 329 CD2 LEU 46 -5.430 2.441 9.660 1.00 1.00 C ATOM 330 N ALA 47 -0.987 -0.485 8.721 1.00 1.00 N ATOM 331 CA ALA 47 -0.067 -1.502 9.138 1.00 1.00 C ATOM 332 C ALA 47 1.142 -0.887 9.770 1.00 1.00 C ATOM 333 O ALA 47 1.594 -1.340 10.821 1.00 1.00 O ATOM 335 CB ALA 47 0.335 -2.371 7.956 1.00 1.00 C ATOM 336 N ARG 48 1.699 0.173 9.153 1.00 1.00 N ATOM 337 CA ARG 48 2.910 0.750 9.661 1.00 1.00 C ATOM 338 C ARG 48 2.671 1.302 11.025 1.00 1.00 C ATOM 339 O ARG 48 3.412 1.016 11.963 1.00 1.00 O ATOM 341 CB ARG 48 3.422 1.839 8.716 1.00 1.00 C ATOM 342 CD ARG 48 5.101 3.647 8.252 1.00 1.00 C ATOM 344 NE ARG 48 4.132 4.739 8.310 1.00 1.00 N ATOM 345 CG ARG 48 4.715 2.497 9.169 1.00 1.00 C ATOM 346 CZ ARG 48 4.048 5.710 7.406 1.00 1.00 C ATOM 349 NH1 ARG 48 3.136 6.663 7.539 1.00 1.00 H ATOM 352 NH2 ARG 48 4.877 5.727 6.371 1.00 1.00 H ATOM 353 N GLU 49 1.595 2.094 11.168 1.00 1.00 N ATOM 354 CA GLU 49 1.278 2.699 12.422 1.00 1.00 C ATOM 355 C GLU 49 0.713 1.622 13.272 1.00 1.00 C ATOM 356 O GLU 49 0.298 0.578 12.772 1.00 1.00 O ATOM 358 CB GLU 49 0.307 3.864 12.225 1.00 1.00 C ATOM 359 CD GLU 49 2.009 5.725 12.095 1.00 1.00 C ATOM 360 CG GLU 49 0.870 5.009 11.399 1.00 1.00 C ATOM 361 OE1 GLU 49 1.829 6.135 13.262 1.00 1.00 O ATOM 362 OE2 GLU 49 3.083 5.878 11.476 1.00 1.00 O ATOM 363 N ASN 50 0.705 1.825 14.598 1.00 1.00 N ATOM 364 CA ASN 50 0.177 0.769 15.399 1.00 1.00 C ATOM 365 C ASN 50 -1.306 0.822 15.257 1.00 1.00 C ATOM 366 O ASN 50 -2.001 1.545 15.971 1.00 1.00 O ATOM 368 CB ASN 50 0.644 0.913 16.849 1.00 1.00 C ATOM 369 CG ASN 50 0.221 -0.256 17.716 1.00 1.00 C ATOM 370 OD1 ASN 50 -0.755 -0.943 17.416 1.00 1.00 O ATOM 373 ND2 ASN 50 0.957 -0.486 18.797 1.00 1.00 N ATOM 374 N LYS 51 -1.821 0.046 14.288 1.00 1.00 N ATOM 375 CA LYS 51 -3.224 -0.036 14.025 1.00 1.00 C ATOM 376 C LYS 51 -3.455 -1.473 13.713 1.00 1.00 C ATOM 377 O LYS 51 -3.476 -2.325 14.598 1.00 1.00 O ATOM 379 CB LYS 51 -3.612 0.910 12.886 1.00 1.00 C ATOM 380 CD LYS 51 -4.242 2.873 14.317 1.00 1.00 C ATOM 381 CE LYS 51 -4.055 4.363 14.555 1.00 1.00 C ATOM 382 CG LYS 51 -3.357 2.378 13.185 1.00 1.00 C ATOM 386 NZ LYS 51 -4.892 4.854 15.684 1.00 1.00 N ATOM 387 N VAL 52 -3.648 -1.782 12.420 1.00 1.00 N ATOM 388 CA VAL 52 -3.842 -3.147 12.041 1.00 1.00 C ATOM 389 C VAL 52 -2.546 -3.859 12.248 1.00 1.00 C ATOM 390 O VAL 52 -1.472 -3.286 12.075 1.00 1.00 O ATOM 392 CB VAL 52 -4.331 -3.264 10.585 1.00 1.00 C ATOM 393 CG1 VAL 52 -5.664 -2.554 10.412 1.00 1.00 C ATOM 394 CG2 VAL 52 -3.293 -2.699 9.627 1.00 1.00 C ATOM 395 N VAL 53 -2.627 -5.142 12.650 1.00 1.00 N ATOM 396 CA VAL 53 -1.447 -5.918 12.888 1.00 1.00 C ATOM 397 C VAL 53 -0.787 -5.411 14.165 1.00 1.00 C ATOM 398 O VAL 53 -0.755 -6.198 15.151 1.00 1.00 O ATOM 400 OXT VAL 53 -0.319 -4.240 14.148 1.00 1.00 O ATOM 401 CB VAL 53 -0.477 -5.851 11.694 1.00 1.00 C ATOM 402 CG1 VAL 53 0.724 -6.753 11.931 1.00 1.00 C ATOM 403 CG2 VAL 53 -1.190 -6.235 10.406 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 323 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 43.80 82.9 82 65.1 126 ARMSMC SECONDARY STRUCTURE . . 32.73 94.8 58 60.4 96 ARMSMC SURFACE . . . . . . . . 46.81 78.6 56 62.2 90 ARMSMC BURIED . . . . . . . . 36.48 92.3 26 72.2 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.72 64.7 34 66.7 51 ARMSSC1 RELIABLE SIDE CHAINS . 66.35 64.3 28 63.6 44 ARMSSC1 SECONDARY STRUCTURE . . 58.92 70.8 24 63.2 38 ARMSSC1 SURFACE . . . . . . . . 70.96 58.3 24 64.9 37 ARMSSC1 BURIED . . . . . . . . 55.21 80.0 10 71.4 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.28 54.2 24 60.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 78.87 60.0 15 55.6 27 ARMSSC2 SECONDARY STRUCTURE . . 84.14 56.2 16 55.2 29 ARMSSC2 SURFACE . . . . . . . . 80.45 52.6 19 59.4 32 ARMSSC2 BURIED . . . . . . . . 93.28 60.0 5 62.5 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.97 33.3 9 56.2 16 ARMSSC3 RELIABLE SIDE CHAINS . 74.97 33.3 9 56.2 16 ARMSSC3 SECONDARY STRUCTURE . . 90.43 16.7 6 54.5 11 ARMSSC3 SURFACE . . . . . . . . 74.97 33.3 9 56.2 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.24 40.0 5 55.6 9 ARMSSC4 RELIABLE SIDE CHAINS . 75.24 40.0 5 55.6 9 ARMSSC4 SECONDARY STRUCTURE . . 43.47 66.7 3 50.0 6 ARMSSC4 SURFACE . . . . . . . . 75.24 40.0 5 55.6 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.54 (Number of atoms: 42) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.54 42 65.6 64 CRMSCA CRN = ALL/NP . . . . . 0.0366 CRMSCA SECONDARY STRUCTURE . . 1.37 30 62.5 48 CRMSCA SURFACE . . . . . . . . 1.68 29 63.0 46 CRMSCA BURIED . . . . . . . . 1.16 13 72.2 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.71 208 66.0 315 CRMSMC SECONDARY STRUCTURE . . 1.56 149 62.9 237 CRMSMC SURFACE . . . . . . . . 1.90 143 63.6 225 CRMSMC BURIED . . . . . . . . 1.19 65 72.2 90 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.00 155 20.6 752 CRMSSC RELIABLE SIDE CHAINS . 2.98 123 17.3 710 CRMSSC SECONDARY STRUCTURE . . 2.66 113 19.5 580 CRMSSC SURFACE . . . . . . . . 3.30 111 20.4 543 CRMSSC BURIED . . . . . . . . 2.04 44 21.1 209 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.41 323 32.0 1008 CRMSALL SECONDARY STRUCTURE . . 2.18 233 30.2 772 CRMSALL SURFACE . . . . . . . . 2.67 227 31.2 727 CRMSALL BURIED . . . . . . . . 1.64 96 34.2 281 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.579 0.228 0.162 42 65.6 64 ERRCA SECONDARY STRUCTURE . . 0.497 0.219 0.175 30 62.5 48 ERRCA SURFACE . . . . . . . . 0.666 0.240 0.151 29 63.0 46 ERRCA BURIED . . . . . . . . 0.387 0.201 0.186 13 72.2 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.650 0.236 0.165 208 66.0 315 ERRMC SECONDARY STRUCTURE . . 0.569 0.228 0.176 149 62.9 237 ERRMC SURFACE . . . . . . . . 0.758 0.249 0.158 143 63.6 225 ERRMC BURIED . . . . . . . . 0.411 0.206 0.183 65 72.2 90 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.584 0.380 0.220 155 20.6 752 ERRSC RELIABLE SIDE CHAINS . 1.570 0.377 0.215 123 17.3 710 ERRSC SECONDARY STRUCTURE . . 1.351 0.362 0.220 113 19.5 580 ERRSC SURFACE . . . . . . . . 1.838 0.403 0.215 111 20.4 543 ERRSC BURIED . . . . . . . . 0.943 0.322 0.232 44 21.1 209 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.083 0.299 0.188 323 32.0 1008 ERRALL SECONDARY STRUCTURE . . 0.943 0.288 0.193 233 30.2 772 ERRALL SURFACE . . . . . . . . 1.267 0.318 0.183 227 31.2 727 ERRALL BURIED . . . . . . . . 0.649 0.253 0.199 96 34.2 281 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 13 36 40 42 42 42 64 DISTCA CA (P) 20.31 56.25 62.50 65.62 65.62 64 DISTCA CA (RMS) 0.68 1.23 1.36 1.54 1.54 DISTCA ALL (N) 83 221 277 304 323 323 1008 DISTALL ALL (P) 8.23 21.92 27.48 30.16 32.04 1008 DISTALL ALL (RMS) 0.68 1.24 1.56 1.89 2.41 DISTALL END of the results output