####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 64 ( 493), selected 64 , name T0560TS127_1-D1 # Molecule2: number of CA atoms 64 ( 1008), selected 64 , name T0560-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0560TS127_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 64 3 - 66 4.35 4.35 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 59 8 - 66 1.82 4.82 LCS_AVERAGE: 85.99 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 22 - 54 0.99 5.19 LONGEST_CONTINUOUS_SEGMENT: 33 23 - 55 0.99 5.08 LCS_AVERAGE: 39.99 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 64 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 3 K 3 6 7 64 5 5 6 6 6 7 8 8 9 10 11 12 14 16 19 20 27 33 39 59 LCS_GDT K 4 K 4 6 7 64 5 5 6 6 6 7 8 8 9 10 10 12 14 16 29 49 53 58 62 63 LCS_GDT I 5 I 5 6 7 64 5 5 6 6 6 7 8 8 11 12 16 24 40 50 54 59 61 61 62 63 LCS_GDT V 6 V 6 6 7 64 5 5 6 6 6 7 8 8 11 13 16 32 40 47 54 57 61 61 62 63 LCS_GDT G 7 G 7 6 13 64 5 5 6 6 8 14 16 30 38 42 47 53 56 58 60 60 61 61 62 63 LCS_GDT A 8 A 8 12 59 64 7 13 18 26 36 50 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT N 9 N 9 12 59 64 7 13 21 33 50 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 10 A 10 12 59 64 7 13 21 31 50 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT G 11 G 11 12 59 64 7 15 26 47 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT K 12 K 12 12 59 64 7 16 33 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT V 13 V 13 12 59 64 7 19 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT W 14 W 14 12 59 64 7 19 41 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT H 15 H 15 12 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 16 A 16 12 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT L 17 L 17 12 59 64 5 13 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT N 18 N 18 12 59 64 7 13 31 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 19 E 19 12 59 64 4 13 15 20 29 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 20 A 20 3 59 64 1 3 11 23 42 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT D 21 D 21 3 59 64 0 3 4 17 22 40 56 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT G 22 G 22 33 59 64 3 18 41 43 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT I 23 I 23 33 59 64 8 26 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT S 24 S 24 33 59 64 6 24 41 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT I 25 I 25 33 59 64 8 23 41 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT P 26 P 26 33 59 64 8 25 41 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 27 E 27 33 59 64 10 27 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT L 28 L 28 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 29 A 29 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT R 30 R 30 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT K 31 K 31 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT V 32 V 32 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT N 33 N 33 33 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT L 34 L 34 33 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT S 35 S 35 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT V 36 V 36 33 59 64 8 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 37 E 37 33 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT S 38 S 38 33 59 64 8 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT T 39 T 39 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 40 A 40 33 59 64 8 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT L 41 L 41 33 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 42 A 42 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT V 43 V 43 33 59 64 8 25 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT G 44 G 44 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT W 45 W 45 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT L 46 L 46 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT A 47 A 47 33 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT R 48 R 48 33 59 64 5 26 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 49 E 49 33 59 64 8 27 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT N 50 N 50 33 59 64 9 25 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT K 51 K 51 33 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT V 52 V 52 33 59 64 4 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT V 53 V 53 33 59 64 5 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT I 54 I 54 33 59 64 5 22 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 55 E 55 33 59 64 8 22 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT R 56 R 56 32 59 64 8 23 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT K 57 K 57 32 59 64 4 24 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT N 58 N 58 32 59 64 5 26 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT G 59 G 59 31 59 64 3 3 21 42 52 53 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT L 60 L 60 31 59 64 8 24 41 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT I 61 I 61 31 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 62 E 62 31 59 64 9 27 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT I 63 I 63 31 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT Y 64 Y 64 31 59 64 9 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT N 65 N 65 31 59 64 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_GDT E 66 E 66 23 59 64 3 14 33 48 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 LCS_AVERAGE LCS_A: 75.33 ( 39.99 85.99 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 28 42 49 52 54 57 59 59 59 59 59 59 59 60 60 61 61 62 63 GDT PERCENT_AT 15.62 43.75 65.62 76.56 81.25 84.38 89.06 92.19 92.19 92.19 92.19 92.19 92.19 92.19 93.75 93.75 95.31 95.31 96.88 98.44 GDT RMS_LOCAL 0.32 0.70 0.99 1.16 1.28 1.43 1.63 1.82 1.82 1.82 1.82 1.82 1.82 1.82 2.35 2.35 2.90 2.90 3.41 3.78 GDT RMS_ALL_AT 5.13 5.02 5.05 5.04 5.02 4.93 4.92 4.82 4.82 4.82 4.82 4.82 4.82 4.82 4.68 4.68 4.54 4.54 4.44 4.38 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: E 27 E 27 # possible swapping detected: E 37 E 37 # possible swapping detected: E 49 E 49 # possible swapping detected: E 55 E 55 # possible swapping detected: Y 64 Y 64 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 3 K 3 20.841 0 0.157 1.119 24.971 0.000 0.000 LGA K 4 K 4 15.704 0 0.148 1.072 23.239 0.000 0.000 LGA I 5 I 5 14.450 0 0.048 0.669 18.297 0.000 0.000 LGA V 6 V 6 16.112 0 0.061 0.259 20.327 0.000 0.000 LGA G 7 G 7 11.986 0 0.491 0.491 13.565 0.238 0.238 LGA A 8 A 8 5.105 0 0.588 0.599 7.478 30.833 34.667 LGA N 9 N 9 3.360 0 0.098 1.165 7.711 52.262 38.631 LGA A 10 A 10 3.129 0 0.115 0.107 3.706 53.571 51.524 LGA G 11 G 11 2.413 0 0.032 0.032 2.702 64.881 64.881 LGA K 12 K 12 1.785 0 0.099 0.823 2.805 77.381 73.175 LGA V 13 V 13 1.242 0 0.127 1.148 3.193 81.429 74.490 LGA W 14 W 14 1.761 0 0.116 0.128 3.288 77.143 62.959 LGA H 15 H 15 0.359 0 0.037 1.092 3.119 95.238 79.857 LGA A 16 A 16 0.406 0 0.114 0.113 1.138 92.976 94.381 LGA L 17 L 17 1.720 0 0.055 0.219 2.529 71.071 69.940 LGA N 18 N 18 2.062 0 0.513 1.404 5.588 66.786 51.488 LGA E 19 E 19 3.470 0 0.546 0.954 4.958 43.690 37.513 LGA A 20 A 20 3.750 0 0.608 0.596 6.868 34.524 35.048 LGA D 21 D 21 4.186 0 0.681 0.941 6.741 56.190 36.726 LGA G 22 G 22 2.454 0 0.617 0.617 3.554 57.500 57.500 LGA I 23 I 23 1.226 0 0.073 1.226 3.002 81.429 73.512 LGA S 24 S 24 1.560 0 0.079 0.577 3.382 79.286 73.333 LGA I 25 I 25 1.916 0 0.065 0.554 2.646 72.857 66.905 LGA P 26 P 26 1.670 0 0.064 0.299 1.687 72.857 72.857 LGA E 27 E 27 0.989 0 0.064 1.008 5.549 85.952 66.667 LGA L 28 L 28 0.917 0 0.079 1.314 3.015 90.476 81.250 LGA A 29 A 29 1.193 0 0.104 0.104 1.363 81.429 81.429 LGA R 30 R 30 1.473 0 0.118 0.476 2.641 79.286 76.147 LGA K 31 K 31 1.063 0 0.071 0.773 3.704 81.429 73.862 LGA V 32 V 32 1.020 0 0.035 1.217 3.071 85.952 78.299 LGA N 33 N 33 0.962 0 0.078 0.702 2.548 90.476 82.917 LGA L 34 L 34 0.911 0 0.038 0.110 1.472 85.952 84.821 LGA S 35 S 35 1.103 0 0.029 0.619 2.026 81.429 78.651 LGA V 36 V 36 1.516 0 0.068 0.117 2.276 77.143 72.993 LGA E 37 E 37 1.139 0 0.065 0.750 5.142 85.952 66.138 LGA S 38 S 38 1.055 0 0.026 0.774 1.697 83.690 81.508 LGA T 39 T 39 1.060 0 0.021 0.121 1.425 83.690 82.721 LGA A 40 A 40 1.411 0 0.083 0.082 1.631 81.429 79.714 LGA L 41 L 41 1.219 0 0.058 0.915 2.356 81.429 78.274 LGA A 42 A 42 1.332 0 0.059 0.055 1.698 79.286 79.714 LGA V 43 V 43 1.597 0 0.150 0.168 2.539 79.286 71.973 LGA G 44 G 44 1.358 0 0.064 0.064 1.451 81.429 81.429 LGA W 45 W 45 1.209 0 0.144 0.318 2.111 79.286 77.789 LGA L 46 L 46 0.620 0 0.053 0.065 0.942 90.476 91.667 LGA A 47 A 47 0.980 0 0.178 0.177 1.637 83.810 83.333 LGA R 48 R 48 1.789 0 0.025 0.474 3.586 79.405 62.078 LGA E 49 E 49 0.694 0 0.057 0.504 3.160 88.214 80.053 LGA N 50 N 50 1.393 0 0.044 0.988 5.619 85.952 66.190 LGA K 51 K 51 0.469 0 0.043 1.118 6.318 100.000 73.757 LGA V 52 V 52 0.563 0 0.316 1.266 3.128 86.429 79.864 LGA V 53 V 53 0.654 0 0.030 1.138 3.332 83.810 78.299 LGA I 54 I 54 1.370 0 0.058 0.586 2.796 79.286 71.071 LGA E 55 E 55 1.181 0 0.023 0.218 1.415 81.429 82.434 LGA R 56 R 56 1.492 0 0.039 1.093 2.685 75.000 73.810 LGA K 57 K 57 1.663 0 0.110 1.250 7.646 77.143 51.852 LGA N 58 N 58 1.157 0 0.643 1.014 1.968 79.286 80.476 LGA G 59 G 59 3.325 0 0.133 0.133 3.325 55.476 55.476 LGA L 60 L 60 1.853 0 0.102 0.197 3.492 75.119 66.190 LGA I 61 I 61 0.517 0 0.057 1.425 3.885 90.476 79.345 LGA E 62 E 62 1.043 0 0.055 0.809 4.450 88.214 67.566 LGA I 63 I 63 0.636 0 0.036 0.059 0.832 90.476 90.476 LGA Y 64 Y 64 0.707 0 0.030 0.604 3.006 90.476 76.310 LGA N 65 N 65 0.668 0 0.044 1.016 4.328 88.333 76.190 LGA E 66 E 66 2.428 0 0.660 1.128 5.187 69.048 51.058 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 64 256 256 100.00 493 493 100.00 64 SUMMARY(RMSD_GDC): 4.346 4.184 5.013 71.484 65.053 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 64 64 4.0 59 1.82 76.562 82.509 3.065 LGA_LOCAL RMSD: 1.825 Number of atoms: 59 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.824 Number of assigned atoms: 64 Std_ASGN_ATOMS RMSD: 4.346 Standard rmsd on all 64 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.729300 * X + -0.552101 * Y + -0.404112 * Z + -10.397707 Y_new = -0.040861 * X + -0.624730 * Y + 0.779771 * Z + -26.869196 Z_new = -0.682973 * X + -0.552174 * Y + -0.478175 * Z + 12.726527 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.055969 0.751825 -2.284498 [DEG: -3.2068 43.0764 -130.8921 ] ZXZ: -2.663456 2.069372 -2.250690 [DEG: -152.6048 118.5663 -128.9551 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0560TS127_1-D1 REMARK 2: T0560-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0560TS127_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 64 64 4.0 59 1.82 82.509 4.35 REMARK ---------------------------------------------------------- MOLECULE T0560TS127_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0560 REMARK MODEL 1 REFINED REMARK PARENT 2V9V_A ATOM 17 N LYS 3 -20.481 4.958 9.277 1.00 0.00 N ATOM 18 CA LYS 3 -19.814 6.188 9.624 1.00 0.00 C ATOM 19 C LYS 3 -18.468 6.308 8.908 1.00 0.00 C ATOM 20 O LYS 3 -18.218 7.337 8.299 1.00 0.00 O ATOM 21 CB LYS 3 -19.554 6.390 11.144 1.00 0.00 C ATOM 22 CG LYS 3 -19.392 5.202 12.105 1.00 0.00 C ATOM 23 CD LYS 3 -18.117 5.440 12.932 1.00 0.00 C ATOM 24 CE LYS 3 -17.883 4.479 14.102 1.00 0.00 C ATOM 25 NZ LYS 3 -16.622 4.788 14.795 1.00 0.00 N ATOM 26 N LYS 4 -17.618 5.302 8.951 1.00 0.00 N ATOM 27 CA LYS 4 -16.390 5.191 8.179 1.00 0.00 C ATOM 28 C LYS 4 -16.559 5.795 6.772 1.00 0.00 C ATOM 29 O LYS 4 -15.923 6.793 6.479 1.00 0.00 O ATOM 30 CB LYS 4 -16.001 3.691 8.092 1.00 0.00 C ATOM 31 CG LYS 4 -17.086 2.685 7.629 1.00 0.00 C ATOM 32 CD LYS 4 -16.580 1.313 7.139 1.00 0.00 C ATOM 33 CE LYS 4 -17.665 0.365 6.586 1.00 0.00 C ATOM 34 NZ LYS 4 -17.650 -0.968 7.284 1.00 0.00 N ATOM 35 N ILE 5 -17.429 5.256 5.939 1.00 0.00 N ATOM 36 CA ILE 5 -17.657 5.688 4.582 1.00 0.00 C ATOM 37 C ILE 5 -18.198 7.091 4.559 1.00 0.00 C ATOM 38 O ILE 5 -17.682 7.927 3.827 1.00 0.00 O ATOM 39 CB ILE 5 -18.600 4.758 3.774 1.00 0.00 C ATOM 40 CG1 ILE 5 -18.389 3.260 4.056 1.00 0.00 C ATOM 41 CG2 ILE 5 -18.471 4.981 2.276 1.00 0.00 C ATOM 42 CD1 ILE 5 -16.919 2.815 4.028 1.00 0.00 C ATOM 43 N VAL 6 -19.227 7.398 5.339 1.00 0.00 N ATOM 44 CA VAL 6 -19.813 8.738 5.401 1.00 0.00 C ATOM 45 C VAL 6 -18.710 9.815 5.626 1.00 0.00 C ATOM 46 O VAL 6 -18.804 10.903 5.061 1.00 0.00 O ATOM 47 CB VAL 6 -20.955 8.890 6.472 1.00 0.00 C ATOM 48 CG1 VAL 6 -21.663 7.572 6.793 1.00 0.00 C ATOM 49 CG2 VAL 6 -20.528 9.463 7.835 1.00 0.00 C ATOM 50 N GLY 7 -17.676 9.523 6.406 1.00 0.00 N ATOM 51 CA GLY 7 -16.569 10.421 6.673 1.00 0.00 C ATOM 52 C GLY 7 -15.442 10.466 5.646 1.00 0.00 C ATOM 53 O GLY 7 -15.641 10.146 4.461 1.00 0.00 O ATOM 54 N ALA 8 -14.252 10.920 6.100 1.00 0.00 N ATOM 55 CA ALA 8 -13.085 10.922 5.199 1.00 0.00 C ATOM 56 C ALA 8 -12.785 9.445 4.839 1.00 0.00 C ATOM 57 O ALA 8 -12.893 8.549 5.674 1.00 0.00 O ATOM 58 CB ALA 8 -11.916 11.636 5.895 1.00 0.00 C ATOM 59 N ASN 9 -12.416 9.177 3.601 1.00 0.00 N ATOM 60 CA ASN 9 -12.021 7.876 3.071 1.00 0.00 C ATOM 61 C ASN 9 -11.139 7.037 4.020 1.00 0.00 C ATOM 62 O ASN 9 -11.356 5.813 4.091 1.00 0.00 O ATOM 63 CB ASN 9 -11.261 8.122 1.754 1.00 0.00 C ATOM 64 CG ASN 9 -12.132 8.642 0.585 1.00 0.00 C ATOM 65 OD1 ASN 9 -13.084 8.000 0.136 1.00 0.00 O ATOM 66 ND2 ASN 9 -11.970 9.876 0.150 1.00 0.00 N ATOM 67 N ALA 10 -10.226 7.646 4.775 1.00 0.00 N ATOM 68 CA ALA 10 -9.341 6.896 5.695 1.00 0.00 C ATOM 69 C ALA 10 -10.129 6.127 6.774 1.00 0.00 C ATOM 70 O ALA 10 -9.924 4.924 6.924 1.00 0.00 O ATOM 71 CB ALA 10 -8.261 7.735 6.392 1.00 0.00 C ATOM 72 N GLY 11 -11.092 6.778 7.425 1.00 0.00 N ATOM 73 CA GLY 11 -12.021 6.134 8.348 1.00 0.00 C ATOM 74 C GLY 11 -12.896 5.063 7.653 1.00 0.00 C ATOM 75 O GLY 11 -13.100 3.986 8.193 1.00 0.00 O ATOM 76 N LYS 12 -13.404 5.341 6.457 1.00 0.00 N ATOM 77 CA LYS 12 -14.123 4.436 5.574 1.00 0.00 C ATOM 78 C LYS 12 -13.379 3.110 5.465 1.00 0.00 C ATOM 79 O LYS 12 -13.962 2.076 5.814 1.00 0.00 O ATOM 80 CB LYS 12 -14.234 4.981 4.127 1.00 0.00 C ATOM 81 CG LYS 12 -14.836 6.375 3.869 1.00 0.00 C ATOM 82 CD LYS 12 -15.162 6.554 2.389 1.00 0.00 C ATOM 83 CE LYS 12 -15.471 8.005 2.041 1.00 0.00 C ATOM 84 NZ LYS 12 -15.614 8.149 0.557 1.00 0.00 N ATOM 85 N VAL 13 -12.110 3.225 5.097 1.00 0.00 N ATOM 86 CA VAL 13 -11.184 2.141 4.807 1.00 0.00 C ATOM 87 C VAL 13 -10.975 1.380 6.130 1.00 0.00 C ATOM 88 O VAL 13 -11.277 0.185 6.241 1.00 0.00 O ATOM 89 CB VAL 13 -9.815 2.710 4.310 1.00 0.00 C ATOM 90 CG1 VAL 13 -8.746 1.620 4.273 1.00 0.00 C ATOM 91 CG2 VAL 13 -9.799 3.349 2.937 1.00 0.00 C ATOM 92 N TRP 14 -10.501 2.102 7.134 1.00 0.00 N ATOM 93 CA TRP 14 -10.226 1.632 8.471 1.00 0.00 C ATOM 94 C TRP 14 -11.388 0.794 9.033 1.00 0.00 C ATOM 95 O TRP 14 -11.131 -0.343 9.418 1.00 0.00 O ATOM 96 CB TRP 14 -9.903 2.828 9.385 1.00 0.00 C ATOM 97 CG TRP 14 -9.527 2.539 10.809 1.00 0.00 C ATOM 98 CD1 TRP 14 -8.274 2.265 11.248 1.00 0.00 C ATOM 99 CD2 TRP 14 -10.414 2.405 11.956 1.00 0.00 C ATOM 100 NE1 TRP 14 -8.321 2.005 12.615 1.00 0.00 N ATOM 101 CE2 TRP 14 -9.622 2.080 13.095 1.00 0.00 C ATOM 102 CE3 TRP 14 -11.814 2.514 12.148 1.00 0.00 C ATOM 103 CZ2 TRP 14 -10.189 1.875 14.363 1.00 0.00 C ATOM 104 CZ3 TRP 14 -12.397 2.305 13.419 1.00 0.00 C ATOM 105 CH2 TRP 14 -11.583 1.984 14.521 1.00 0.00 H ATOM 106 N HIS 15 -12.622 1.277 9.094 1.00 0.00 N ATOM 107 CA HIS 15 -13.662 0.487 9.706 1.00 0.00 C ATOM 108 C HIS 15 -13.964 -0.756 8.851 1.00 0.00 C ATOM 109 O HIS 15 -14.233 -1.801 9.420 1.00 0.00 O ATOM 110 CB HIS 15 -14.959 1.304 9.928 1.00 0.00 C ATOM 111 CG HIS 15 -16.111 0.615 10.657 1.00 0.00 C ATOM 112 ND1 HIS 15 -16.645 -0.647 10.307 1.00 0.00 N ATOM 113 CD2 HIS 15 -17.160 1.201 11.313 1.00 0.00 C ATOM 114 CE1 HIS 15 -17.844 -0.794 10.871 1.00 0.00 C ATOM 115 NE2 HIS 15 -18.241 0.344 11.434 1.00 0.00 N ATOM 116 N ALA 16 -14.123 -0.691 7.525 1.00 0.00 N ATOM 117 CA ALA 16 -14.272 -1.862 6.671 1.00 0.00 C ATOM 118 C ALA 16 -13.203 -2.906 7.028 1.00 0.00 C ATOM 119 O ALA 16 -13.528 -4.082 7.061 1.00 0.00 O ATOM 120 CB ALA 16 -14.186 -1.453 5.208 1.00 0.00 C ATOM 121 N LEU 17 -11.962 -2.528 7.323 1.00 0.00 N ATOM 122 CA LEU 17 -10.921 -3.447 7.706 1.00 0.00 C ATOM 123 C LEU 17 -11.054 -4.121 9.075 1.00 0.00 C ATOM 124 O LEU 17 -10.528 -5.206 9.249 1.00 0.00 O ATOM 125 CB LEU 17 -9.587 -2.702 7.652 1.00 0.00 C ATOM 126 CG LEU 17 -9.189 -2.412 6.204 1.00 0.00 C ATOM 127 CD1 LEU 17 -7.806 -1.764 6.128 1.00 0.00 C ATOM 128 CD2 LEU 17 -9.190 -3.702 5.392 1.00 0.00 C ATOM 129 N ASN 18 -11.696 -3.520 10.062 1.00 0.00 N ATOM 130 CA ASN 18 -11.945 -4.190 11.314 1.00 0.00 C ATOM 131 C ASN 18 -13.127 -5.148 11.161 1.00 0.00 C ATOM 132 O ASN 18 -14.220 -4.872 11.659 1.00 0.00 O ATOM 133 CB ASN 18 -12.216 -3.176 12.444 1.00 0.00 C ATOM 134 CG ASN 18 -11.081 -2.208 12.872 1.00 0.00 C ATOM 135 OD1 ASN 18 -10.390 -2.411 13.866 1.00 0.00 O ATOM 136 ND2 ASN 18 -10.963 -1.022 12.269 1.00 0.00 N ATOM 137 N GLU 19 -12.873 -6.167 10.343 1.00 0.00 N ATOM 138 CA GLU 19 -13.724 -7.245 9.846 1.00 0.00 C ATOM 139 C GLU 19 -13.364 -8.558 10.529 1.00 0.00 C ATOM 140 O GLU 19 -12.233 -8.753 10.996 1.00 0.00 O ATOM 141 CB GLU 19 -13.564 -7.354 8.308 1.00 0.00 C ATOM 142 CG GLU 19 -14.185 -8.576 7.584 1.00 0.00 C ATOM 143 CD GLU 19 -15.668 -8.799 7.890 1.00 0.00 C ATOM 144 OE1 GLU 19 -16.367 -7.789 8.131 1.00 0.00 O ATOM 145 OE2 GLU 19 -16.104 -9.969 7.909 1.00 0.00 O ATOM 146 N ALA 20 -14.348 -9.445 10.605 1.00 0.00 N ATOM 147 CA ALA 20 -14.265 -10.763 11.184 1.00 0.00 C ATOM 148 C ALA 20 -13.072 -11.642 10.741 1.00 0.00 C ATOM 149 O ALA 20 -12.403 -12.207 11.607 1.00 0.00 O ATOM 150 CB ALA 20 -15.547 -11.568 10.969 1.00 0.00 C ATOM 151 N ASP 21 -12.899 -11.884 9.436 1.00 0.00 N ATOM 152 CA ASP 21 -11.855 -12.760 8.913 1.00 0.00 C ATOM 153 C ASP 21 -10.893 -12.044 7.969 1.00 0.00 C ATOM 154 O ASP 21 -10.092 -12.702 7.311 1.00 0.00 O ATOM 155 CB ASP 21 -12.512 -13.923 8.169 1.00 0.00 C ATOM 156 CG ASP 21 -13.133 -14.984 9.063 1.00 0.00 C ATOM 157 OD1 ASP 21 -12.377 -15.777 9.665 1.00 0.00 O ATOM 158 OD2 ASP 21 -14.372 -15.094 9.034 1.00 0.00 O ATOM 159 N GLY 22 -10.920 -10.713 7.882 1.00 0.00 N ATOM 160 CA GLY 22 -10.087 -9.980 6.928 1.00 0.00 C ATOM 161 C GLY 22 -10.666 -9.976 5.510 1.00 0.00 C ATOM 162 O GLY 22 -11.598 -10.730 5.248 1.00 0.00 O ATOM 163 N ILE 23 -10.101 -9.182 4.581 1.00 0.00 N ATOM 164 CA ILE 23 -10.558 -9.167 3.179 1.00 0.00 C ATOM 165 C ILE 23 -9.424 -8.822 2.213 1.00 0.00 C ATOM 166 O ILE 23 -8.679 -7.856 2.418 1.00 0.00 O ATOM 167 CB ILE 23 -11.739 -8.198 2.961 1.00 0.00 C ATOM 168 CG1 ILE 23 -11.415 -6.763 3.402 1.00 0.00 C ATOM 169 CG2 ILE 23 -13.030 -8.659 3.631 1.00 0.00 C ATOM 170 CD1 ILE 23 -12.404 -5.713 2.864 1.00 0.00 C ATOM 171 N SER 24 -9.343 -9.548 1.102 1.00 0.00 N ATOM 172 CA SER 24 -8.380 -9.349 0.061 1.00 0.00 C ATOM 173 C SER 24 -8.327 -7.860 -0.289 1.00 0.00 C ATOM 174 O SER 24 -9.348 -7.163 -0.364 1.00 0.00 O ATOM 175 CB SER 24 -8.720 -10.277 -1.120 1.00 0.00 C ATOM 176 OG SER 24 -9.893 -9.969 -1.856 1.00 0.00 O ATOM 177 N ILE 25 -7.121 -7.346 -0.502 1.00 0.00 N ATOM 178 CA ILE 25 -6.818 -5.950 -0.687 1.00 0.00 C ATOM 179 C ILE 25 -7.760 -5.327 -1.764 1.00 0.00 C ATOM 180 O ILE 25 -8.519 -4.433 -1.372 1.00 0.00 O ATOM 181 CB ILE 25 -5.321 -5.704 -1.020 1.00 0.00 C ATOM 182 CG1 ILE 25 -4.448 -6.093 0.198 1.00 0.00 C ATOM 183 CG2 ILE 25 -5.075 -4.231 -1.396 1.00 0.00 C ATOM 184 CD1 ILE 25 -2.956 -5.743 0.112 1.00 0.00 C ATOM 185 N PRO 26 -7.786 -5.682 -3.077 1.00 0.00 N ATOM 186 CA PRO 26 -8.725 -5.017 -3.980 1.00 0.00 C ATOM 187 C PRO 26 -10.179 -5.012 -3.452 1.00 0.00 C ATOM 188 O PRO 26 -10.869 -4.019 -3.707 1.00 0.00 O ATOM 189 CB PRO 26 -8.642 -5.706 -5.361 1.00 0.00 C ATOM 190 CG PRO 26 -7.372 -6.551 -5.282 1.00 0.00 C ATOM 191 CD PRO 26 -7.097 -6.754 -3.781 1.00 0.00 C ATOM 192 N GLU 27 -10.738 -6.079 -2.861 1.00 0.00 N ATOM 193 CA GLU 27 -12.081 -6.066 -2.343 1.00 0.00 C ATOM 194 C GLU 27 -12.295 -4.847 -1.423 1.00 0.00 C ATOM 195 O GLU 27 -13.195 -4.046 -1.688 1.00 0.00 O ATOM 196 CB GLU 27 -12.357 -7.373 -1.591 1.00 0.00 C ATOM 197 CG GLU 27 -12.892 -8.536 -2.443 1.00 0.00 C ATOM 198 CD GLU 27 -13.235 -9.672 -1.496 1.00 0.00 C ATOM 199 OE1 GLU 27 -12.345 -10.484 -1.196 1.00 0.00 O ATOM 200 OE2 GLU 27 -14.398 -9.726 -1.057 1.00 0.00 O ATOM 201 N LEU 28 -11.452 -4.678 -0.410 1.00 0.00 N ATOM 202 CA LEU 28 -11.386 -3.589 0.540 1.00 0.00 C ATOM 203 C LEU 28 -11.455 -2.278 -0.254 1.00 0.00 C ATOM 204 O LEU 28 -12.312 -1.405 -0.008 1.00 0.00 O ATOM 205 CB LEU 28 -10.071 -3.648 1.338 1.00 0.00 C ATOM 206 CG LEU 28 -9.878 -2.743 2.570 1.00 0.00 C ATOM 207 CD1 LEU 28 -8.597 -1.911 2.409 1.00 0.00 C ATOM 208 CD2 LEU 28 -11.051 -1.812 2.880 1.00 0.00 C ATOM 209 N ALA 29 -10.610 -2.150 -1.258 1.00 0.00 N ATOM 210 CA ALA 29 -10.564 -1.006 -2.144 1.00 0.00 C ATOM 211 C ALA 29 -11.904 -0.717 -2.842 1.00 0.00 C ATOM 212 O ALA 29 -12.282 0.465 -2.837 1.00 0.00 O ATOM 213 CB ALA 29 -9.493 -1.233 -3.227 1.00 0.00 C ATOM 214 N ARG 30 -12.572 -1.724 -3.414 1.00 0.00 N ATOM 215 CA ARG 30 -13.866 -1.558 -4.082 1.00 0.00 C ATOM 216 C ARG 30 -14.899 -1.096 -3.051 1.00 0.00 C ATOM 217 O ARG 30 -15.527 -0.066 -3.311 1.00 0.00 O ATOM 218 CB ARG 30 -14.359 -2.849 -4.723 1.00 0.00 C ATOM 219 CG ARG 30 -13.598 -3.315 -5.957 1.00 0.00 C ATOM 220 CD ARG 30 -14.247 -4.603 -6.491 1.00 0.00 C ATOM 221 NE ARG 30 -13.340 -5.338 -7.407 1.00 0.00 N ATOM 222 CZ ARG 30 -12.549 -6.393 -7.086 1.00 0.00 C ATOM 223 NH1 ARG 30 -12.526 -6.801 -5.803 1.00 0.00 H ATOM 224 NH2 ARG 30 -11.908 -6.955 -8.148 1.00 0.00 H ATOM 225 N LYS 31 -15.117 -1.802 -1.926 1.00 0.00 N ATOM 226 CA LYS 31 -16.015 -1.421 -0.836 1.00 0.00 C ATOM 227 C LYS 31 -15.740 0.053 -0.402 1.00 0.00 C ATOM 228 O LYS 31 -16.679 0.711 0.044 1.00 0.00 O ATOM 229 CB LYS 31 -15.897 -2.365 0.360 1.00 0.00 C ATOM 230 CG LYS 31 -16.297 -3.864 0.273 1.00 0.00 C ATOM 231 CD LYS 31 -17.760 -4.203 -0.086 1.00 0.00 C ATOM 232 CE LYS 31 -18.216 -5.626 0.258 1.00 0.00 C ATOM 233 NZ LYS 31 -18.020 -6.014 1.693 1.00 0.00 N ATOM 234 N VAL 32 -14.489 0.534 -0.414 1.00 0.00 N ATOM 235 CA VAL 32 -14.110 1.901 -0.021 1.00 0.00 C ATOM 236 C VAL 32 -14.194 2.954 -1.160 1.00 0.00 C ATOM 237 O VAL 32 -14.201 4.150 -0.873 1.00 0.00 O ATOM 238 CB VAL 32 -12.693 1.886 0.584 1.00 0.00 C ATOM 239 CG1 VAL 32 -12.179 3.269 0.941 1.00 0.00 C ATOM 240 CG2 VAL 32 -12.663 1.047 1.861 1.00 0.00 C ATOM 241 N ASN 33 -14.381 2.580 -2.426 1.00 0.00 N ATOM 242 CA ASN 33 -14.332 3.520 -3.549 1.00 0.00 C ATOM 243 C ASN 33 -12.990 4.286 -3.589 1.00 0.00 C ATOM 244 O ASN 33 -13.008 5.514 -3.700 1.00 0.00 O ATOM 245 CB ASN 33 -15.497 4.536 -3.488 1.00 0.00 C ATOM 246 CG ASN 33 -16.914 4.003 -3.823 1.00 0.00 C ATOM 247 OD1 ASN 33 -17.078 2.889 -4.291 1.00 0.00 O ATOM 248 ND2 ASN 33 -17.995 4.773 -3.687 1.00 0.00 N ATOM 249 N LEU 34 -11.854 3.577 -3.498 1.00 0.00 N ATOM 250 CA LEU 34 -10.515 4.147 -3.624 1.00 0.00 C ATOM 251 C LEU 34 -9.621 3.239 -4.466 1.00 0.00 C ATOM 252 O LEU 34 -9.792 2.024 -4.460 1.00 0.00 O ATOM 253 CB LEU 34 -9.830 4.386 -2.279 1.00 0.00 C ATOM 254 CG LEU 34 -10.474 5.484 -1.433 1.00 0.00 C ATOM 255 CD1 LEU 34 -9.706 5.587 -0.136 1.00 0.00 C ATOM 256 CD2 LEU 34 -10.454 6.827 -2.146 1.00 0.00 C ATOM 257 N SER 35 -8.817 3.783 -5.364 1.00 0.00 N ATOM 258 CA SER 35 -7.876 3.101 -6.191 1.00 0.00 C ATOM 259 C SER 35 -6.804 2.401 -5.336 1.00 0.00 C ATOM 260 O SER 35 -6.449 2.843 -4.254 1.00 0.00 O ATOM 261 CB SER 35 -7.319 4.085 -7.199 1.00 0.00 C ATOM 262 OG SER 35 -6.789 5.231 -6.560 1.00 0.00 O ATOM 263 N VAL 36 -6.263 1.298 -5.845 1.00 0.00 N ATOM 264 CA VAL 36 -5.198 0.498 -5.292 1.00 0.00 C ATOM 265 C VAL 36 -4.059 1.359 -4.772 1.00 0.00 C ATOM 266 O VAL 36 -3.482 1.020 -3.736 1.00 0.00 O ATOM 267 CB VAL 36 -4.634 -0.439 -6.385 1.00 0.00 C ATOM 268 CG1 VAL 36 -3.273 -1.095 -6.025 1.00 0.00 C ATOM 269 CG2 VAL 36 -5.646 -1.538 -6.723 1.00 0.00 C ATOM 270 N GLU 37 -3.656 2.436 -5.430 1.00 0.00 N ATOM 271 CA GLU 37 -2.595 3.271 -4.895 1.00 0.00 C ATOM 272 C GLU 37 -2.951 3.795 -3.490 1.00 0.00 C ATOM 273 O GLU 37 -2.157 3.636 -2.568 1.00 0.00 O ATOM 274 CB GLU 37 -2.293 4.421 -5.903 1.00 0.00 C ATOM 275 CG GLU 37 -1.258 5.475 -5.433 1.00 0.00 C ATOM 276 CD GLU 37 -1.002 6.623 -6.389 1.00 0.00 C ATOM 277 OE1 GLU 37 -0.122 7.438 -6.028 1.00 0.00 O ATOM 278 OE2 GLU 37 -1.660 6.612 -7.453 1.00 0.00 O ATOM 279 N SER 38 -4.104 4.396 -3.222 1.00 0.00 N ATOM 280 CA SER 38 -4.480 4.850 -1.895 1.00 0.00 C ATOM 281 C SER 38 -4.766 3.687 -0.912 1.00 0.00 C ATOM 282 O SER 38 -4.378 3.745 0.272 1.00 0.00 O ATOM 283 CB SER 38 -5.744 5.707 -2.046 1.00 0.00 C ATOM 284 OG SER 38 -5.671 6.685 -3.080 1.00 0.00 O ATOM 285 N THR 39 -5.361 2.628 -1.446 1.00 0.00 N ATOM 286 CA THR 39 -5.653 1.427 -0.660 1.00 0.00 C ATOM 287 C THR 39 -4.320 0.839 -0.093 1.00 0.00 C ATOM 288 O THR 39 -4.238 0.593 1.108 1.00 0.00 O ATOM 289 CB THR 39 -6.387 0.399 -1.557 1.00 0.00 C ATOM 290 OG1 THR 39 -7.451 1.058 -2.254 1.00 0.00 O ATOM 291 CG2 THR 39 -6.897 -0.761 -0.663 1.00 0.00 C ATOM 292 N ALA 40 -3.252 0.670 -0.870 1.00 0.00 N ATOM 293 CA ALA 40 -1.957 0.177 -0.443 1.00 0.00 C ATOM 294 C ALA 40 -1.241 1.119 0.529 1.00 0.00 C ATOM 295 O ALA 40 -0.902 0.692 1.625 1.00 0.00 O ATOM 296 CB ALA 40 -1.072 -0.039 -1.694 1.00 0.00 C ATOM 297 N LEU 41 -1.022 2.390 0.235 1.00 0.00 N ATOM 298 CA LEU 41 -0.436 3.322 1.183 1.00 0.00 C ATOM 299 C LEU 41 -1.153 3.343 2.569 1.00 0.00 C ATOM 300 O LEU 41 -0.471 3.294 3.598 1.00 0.00 O ATOM 301 CB LEU 41 -0.492 4.710 0.579 1.00 0.00 C ATOM 302 CG LEU 41 0.450 4.937 -0.612 1.00 0.00 C ATOM 303 CD1 LEU 41 0.214 6.313 -1.251 1.00 0.00 C ATOM 304 CD2 LEU 41 1.915 4.839 -0.191 1.00 0.00 C ATOM 305 N ALA 42 -2.488 3.312 2.605 1.00 0.00 N ATOM 306 CA ALA 42 -3.287 3.292 3.825 1.00 0.00 C ATOM 307 C ALA 42 -2.918 2.013 4.612 1.00 0.00 C ATOM 308 O ALA 42 -2.623 2.076 5.812 1.00 0.00 O ATOM 309 CB ALA 42 -4.797 3.375 3.638 1.00 0.00 C ATOM 310 N VAL 43 -2.873 0.864 3.939 1.00 0.00 N ATOM 311 CA VAL 43 -2.351 -0.407 4.434 1.00 0.00 C ATOM 312 C VAL 43 -1.059 -0.208 5.210 1.00 0.00 C ATOM 313 O VAL 43 -0.994 -0.541 6.376 1.00 0.00 O ATOM 314 CB VAL 43 -2.086 -1.317 3.238 1.00 0.00 C ATOM 315 CG1 VAL 43 -1.215 -2.522 3.539 1.00 0.00 C ATOM 316 CG2 VAL 43 -3.410 -1.814 2.647 1.00 0.00 C ATOM 317 N GLY 44 -0.072 0.354 4.541 1.00 0.00 N ATOM 318 CA GLY 44 1.229 0.660 5.083 1.00 0.00 C ATOM 319 C GLY 44 1.182 1.576 6.311 1.00 0.00 C ATOM 320 O GLY 44 1.892 1.330 7.268 1.00 0.00 O ATOM 321 N TRP 45 0.397 2.644 6.327 1.00 0.00 N ATOM 322 CA TRP 45 0.266 3.515 7.476 1.00 0.00 C ATOM 323 C TRP 45 -0.242 2.732 8.691 1.00 0.00 C ATOM 324 O TRP 45 0.434 2.716 9.723 1.00 0.00 O ATOM 325 CB TRP 45 -0.653 4.688 7.052 1.00 0.00 C ATOM 326 CG TRP 45 -1.428 5.449 8.069 1.00 0.00 C ATOM 327 CD1 TRP 45 -2.700 5.167 8.437 1.00 0.00 C ATOM 328 CD2 TRP 45 -0.983 6.566 8.886 1.00 0.00 C ATOM 329 NE1 TRP 45 -3.083 6.045 9.443 1.00 0.00 N ATOM 330 CE2 TRP 45 -2.053 6.926 9.758 1.00 0.00 C ATOM 331 CE3 TRP 45 0.229 7.286 9.014 1.00 0.00 C ATOM 332 CZ2 TRP 45 -1.932 7.957 10.703 1.00 0.00 C ATOM 333 CZ3 TRP 45 0.361 8.341 9.945 1.00 0.00 C ATOM 334 CH2 TRP 45 -0.718 8.664 10.790 1.00 0.00 H ATOM 335 N LEU 46 -1.366 2.037 8.581 1.00 0.00 N ATOM 336 CA LEU 46 -1.903 1.200 9.604 1.00 0.00 C ATOM 337 C LEU 46 -0.996 0.008 9.928 1.00 0.00 C ATOM 338 O LEU 46 -0.936 -0.452 11.067 1.00 0.00 O ATOM 339 CB LEU 46 -3.289 0.688 9.181 1.00 0.00 C ATOM 340 CG LEU 46 -4.310 1.799 8.844 1.00 0.00 C ATOM 341 CD1 LEU 46 -5.606 1.250 8.278 1.00 0.00 C ATOM 342 CD2 LEU 46 -4.641 2.597 10.101 1.00 0.00 C ATOM 343 N ALA 47 -0.384 -0.648 8.964 1.00 0.00 N ATOM 344 CA ALA 47 0.553 -1.738 9.216 1.00 0.00 C ATOM 345 C ALA 47 1.645 -1.293 10.207 1.00 0.00 C ATOM 346 O ALA 47 1.775 -1.933 11.272 1.00 0.00 O ATOM 347 CB ALA 47 1.232 -2.193 7.946 1.00 0.00 C ATOM 348 N ARG 48 2.442 -0.251 9.890 1.00 0.00 N ATOM 349 CA ARG 48 3.302 0.438 10.884 1.00 0.00 C ATOM 350 C ARG 48 2.602 0.820 12.215 1.00 0.00 C ATOM 351 O ARG 48 3.134 0.611 13.294 1.00 0.00 O ATOM 352 CB ARG 48 3.934 1.706 10.282 1.00 0.00 C ATOM 353 CG ARG 48 4.974 2.405 11.191 1.00 0.00 C ATOM 354 CD ARG 48 5.273 3.843 10.743 1.00 0.00 C ATOM 355 NE ARG 48 4.105 4.715 11.092 1.00 0.00 N ATOM 356 CZ ARG 48 3.709 5.189 12.309 1.00 0.00 C ATOM 357 NH1 ARG 48 4.499 4.984 13.388 1.00 0.00 H ATOM 358 NH2 ARG 48 2.526 5.887 12.291 1.00 0.00 H ATOM 359 N GLU 49 1.382 1.320 12.188 1.00 0.00 N ATOM 360 CA GLU 49 0.671 1.665 13.404 1.00 0.00 C ATOM 361 C GLU 49 0.007 0.466 14.124 1.00 0.00 C ATOM 362 O GLU 49 -0.828 0.630 15.021 1.00 0.00 O ATOM 363 CB GLU 49 -0.384 2.743 13.116 1.00 0.00 C ATOM 364 CG GLU 49 0.170 4.080 12.595 1.00 0.00 C ATOM 365 CD GLU 49 -0.763 5.282 12.690 1.00 0.00 C ATOM 366 OE1 GLU 49 -0.181 6.375 12.891 1.00 0.00 O ATOM 367 OE2 GLU 49 -1.993 5.143 12.500 1.00 0.00 O ATOM 368 N ASN 50 0.421 -0.759 13.816 1.00 0.00 N ATOM 369 CA ASN 50 -0.072 -1.969 14.475 1.00 0.00 C ATOM 370 C ASN 50 -1.573 -2.199 14.339 1.00 0.00 C ATOM 371 O ASN 50 -2.187 -2.637 15.312 1.00 0.00 O ATOM 372 CB ASN 50 0.240 -1.911 15.989 1.00 0.00 C ATOM 373 CG ASN 50 1.552 -2.549 16.491 1.00 0.00 C ATOM 374 OD1 ASN 50 2.003 -3.567 15.987 1.00 0.00 O ATOM 375 ND2 ASN 50 2.219 -2.014 17.514 1.00 0.00 N ATOM 376 N LYS 51 -2.221 -1.748 13.261 1.00 0.00 N ATOM 377 CA LYS 51 -3.650 -1.936 13.114 1.00 0.00 C ATOM 378 C LYS 51 -4.073 -2.819 11.943 1.00 0.00 C ATOM 379 O LYS 51 -5.156 -3.400 11.947 1.00 0.00 O ATOM 380 CB LYS 51 -4.296 -0.556 13.020 1.00 0.00 C ATOM 381 CG LYS 51 -4.156 0.096 14.404 1.00 0.00 C ATOM 382 CD LYS 51 -4.972 -0.850 15.290 1.00 0.00 C ATOM 383 CE LYS 51 -4.781 -0.954 16.823 1.00 0.00 C ATOM 384 NZ LYS 51 -5.760 -1.946 17.395 1.00 0.00 N ATOM 385 N VAL 52 -3.234 -2.956 10.916 1.00 0.00 N ATOM 386 CA VAL 52 -3.574 -3.757 9.736 1.00 0.00 C ATOM 387 C VAL 52 -2.454 -4.698 9.356 1.00 0.00 C ATOM 388 O VAL 52 -1.652 -4.453 8.453 1.00 0.00 O ATOM 389 CB VAL 52 -3.899 -2.800 8.568 1.00 0.00 C ATOM 390 CG1 VAL 52 -4.082 -3.473 7.198 1.00 0.00 C ATOM 391 CG2 VAL 52 -5.193 -2.037 8.862 1.00 0.00 C ATOM 392 N VAL 53 -2.397 -5.802 10.055 1.00 0.00 N ATOM 393 CA VAL 53 -1.646 -6.957 9.640 1.00 0.00 C ATOM 394 C VAL 53 -2.007 -7.299 8.178 1.00 0.00 C ATOM 395 O VAL 53 -3.189 -7.220 7.829 1.00 0.00 O ATOM 396 CB VAL 53 -2.204 -8.048 10.553 1.00 0.00 C ATOM 397 CG1 VAL 53 -1.880 -9.442 10.077 1.00 0.00 C ATOM 398 CG2 VAL 53 -1.715 -7.925 11.986 1.00 0.00 C ATOM 399 N ILE 54 -1.071 -7.775 7.335 1.00 0.00 N ATOM 400 CA ILE 54 -1.405 -8.305 6.020 1.00 0.00 C ATOM 401 C ILE 54 -0.584 -9.557 5.661 1.00 0.00 C ATOM 402 O ILE 54 0.592 -9.644 5.977 1.00 0.00 O ATOM 403 CB ILE 54 -1.374 -7.209 4.937 1.00 0.00 C ATOM 404 CG1 ILE 54 -2.523 -6.254 5.254 1.00 0.00 C ATOM 405 CG2 ILE 54 -1.575 -7.791 3.532 1.00 0.00 C ATOM 406 CD1 ILE 54 -2.511 -5.002 4.438 1.00 0.00 C ATOM 407 N GLU 55 -1.292 -10.563 5.125 1.00 0.00 N ATOM 408 CA GLU 55 -0.826 -11.904 4.784 1.00 0.00 C ATOM 409 C GLU 55 -1.237 -12.240 3.357 1.00 0.00 C ATOM 410 O GLU 55 -2.364 -11.955 2.964 1.00 0.00 O ATOM 411 CB GLU 55 -1.396 -12.983 5.715 1.00 0.00 C ATOM 412 CG GLU 55 -0.925 -12.930 7.165 1.00 0.00 C ATOM 413 CD GLU 55 0.315 -13.787 7.390 1.00 0.00 C ATOM 414 OE1 GLU 55 0.311 -14.916 6.855 1.00 0.00 O ATOM 415 OE2 GLU 55 1.231 -13.350 8.115 1.00 0.00 O ATOM 416 N ARG 56 -0.313 -12.755 2.546 1.00 0.00 N ATOM 417 CA ARG 56 -0.555 -13.267 1.204 1.00 0.00 C ATOM 418 C ARG 56 -1.050 -14.715 1.197 1.00 0.00 C ATOM 419 O ARG 56 -0.324 -15.588 1.669 1.00 0.00 O ATOM 420 CB ARG 56 0.710 -13.279 0.379 1.00 0.00 C ATOM 421 CG ARG 56 1.052 -11.915 -0.126 1.00 0.00 C ATOM 422 CD ARG 56 2.351 -12.012 -0.857 1.00 0.00 C ATOM 423 NE ARG 56 2.713 -10.732 -1.489 1.00 0.00 N ATOM 424 CZ ARG 56 3.344 -10.733 -2.655 1.00 0.00 C ATOM 425 NH1 ARG 56 2.661 -11.326 -3.610 1.00 0.00 H ATOM 426 NH2 ARG 56 4.615 -10.258 -2.843 1.00 0.00 H ATOM 427 N LYS 57 -2.223 -15.007 0.621 1.00 0.00 N ATOM 428 CA LYS 57 -2.795 -16.334 0.479 1.00 0.00 C ATOM 429 C LYS 57 -2.839 -16.775 -0.984 1.00 0.00 C ATOM 430 O LYS 57 -3.663 -16.308 -1.765 1.00 0.00 O ATOM 431 CB LYS 57 -4.203 -16.254 1.044 1.00 0.00 C ATOM 432 CG LYS 57 -5.033 -17.529 0.905 1.00 0.00 C ATOM 433 CD LYS 57 -6.398 -17.237 1.531 1.00 0.00 C ATOM 434 CE LYS 57 -7.245 -16.292 0.697 1.00 0.00 C ATOM 435 NZ LYS 57 -8.418 -15.845 1.426 1.00 0.00 N ATOM 436 N ASN 58 -2.004 -17.744 -1.367 1.00 0.00 N ATOM 437 CA ASN 58 -1.851 -18.154 -2.765 1.00 0.00 C ATOM 438 C ASN 58 -1.422 -16.964 -3.633 1.00 0.00 C ATOM 439 O ASN 58 -0.301 -16.508 -3.405 1.00 0.00 O ATOM 440 CB ASN 58 -3.108 -18.842 -3.311 1.00 0.00 C ATOM 441 CG ASN 58 -3.440 -20.174 -2.613 1.00 0.00 C ATOM 442 OD1 ASN 58 -4.444 -20.781 -2.931 1.00 0.00 O ATOM 443 ND2 ASN 58 -2.684 -20.726 -1.666 1.00 0.00 N ATOM 444 N GLY 59 -2.213 -16.491 -4.608 1.00 0.00 N ATOM 445 CA GLY 59 -1.887 -15.330 -5.445 1.00 0.00 C ATOM 446 C GLY 59 -2.142 -13.960 -4.763 1.00 0.00 C ATOM 447 O GLY 59 -1.362 -13.015 -4.860 1.00 0.00 O ATOM 448 N LEU 60 -3.284 -13.820 -4.085 1.00 0.00 N ATOM 449 CA LEU 60 -3.770 -12.601 -3.465 1.00 0.00 C ATOM 450 C LEU 60 -3.139 -12.264 -2.096 1.00 0.00 C ATOM 451 O LEU 60 -2.294 -12.964 -1.553 1.00 0.00 O ATOM 452 CB LEU 60 -5.297 -12.721 -3.352 1.00 0.00 C ATOM 453 CG LEU 60 -6.001 -13.059 -4.685 1.00 0.00 C ATOM 454 CD1 LEU 60 -7.510 -12.860 -4.539 1.00 0.00 C ATOM 455 CD2 LEU 60 -5.516 -12.177 -5.829 1.00 0.00 C ATOM 456 N ILE 61 -3.378 -11.030 -1.674 1.00 0.00 N ATOM 457 CA ILE 61 -2.890 -10.461 -0.430 1.00 0.00 C ATOM 458 C ILE 61 -4.115 -9.912 0.350 1.00 0.00 C ATOM 459 O ILE 61 -4.850 -9.055 -0.159 1.00 0.00 O ATOM 460 CB ILE 61 -1.854 -9.360 -0.793 1.00 0.00 C ATOM 461 CG1 ILE 61 -1.365 -8.555 0.422 1.00 0.00 C ATOM 462 CG2 ILE 61 -2.374 -8.371 -1.854 1.00 0.00 C ATOM 463 CD1 ILE 61 -0.145 -7.700 0.077 1.00 0.00 C ATOM 464 N GLU 62 -4.356 -10.461 1.539 1.00 0.00 N ATOM 465 CA GLU 62 -5.473 -10.194 2.410 1.00 0.00 C ATOM 466 C GLU 62 -5.087 -9.368 3.656 1.00 0.00 C ATOM 467 O GLU 62 -4.101 -9.646 4.345 1.00 0.00 O ATOM 468 CB GLU 62 -6.098 -11.538 2.808 1.00 0.00 C ATOM 469 CG GLU 62 -6.762 -12.352 1.676 1.00 0.00 C ATOM 470 CD GLU 62 -5.919 -13.115 0.661 1.00 0.00 C ATOM 471 OE1 GLU 62 -4.670 -13.074 0.730 1.00 0.00 O ATOM 472 OE2 GLU 62 -6.566 -13.815 -0.145 1.00 0.00 O ATOM 473 N ILE 63 -5.893 -8.321 3.899 1.00 0.00 N ATOM 474 CA ILE 63 -5.841 -7.362 4.993 1.00 0.00 C ATOM 475 C ILE 63 -6.752 -7.837 6.140 1.00 0.00 C ATOM 476 O ILE 63 -7.964 -7.975 5.978 1.00 0.00 O ATOM 477 CB ILE 63 -6.298 -5.986 4.485 1.00 0.00 C ATOM 478 CG1 ILE 63 -5.405 -5.476 3.345 1.00 0.00 C ATOM 479 CG2 ILE 63 -6.286 -4.992 5.639 1.00 0.00 C ATOM 480 CD1 ILE 63 -5.882 -4.165 2.731 1.00 0.00 C ATOM 481 N TYR 64 -6.136 -8.103 7.290 1.00 0.00 N ATOM 482 CA TYR 64 -6.801 -8.563 8.503 1.00 0.00 C ATOM 483 C TYR 64 -6.474 -7.683 9.705 1.00 0.00 C ATOM 484 O TYR 64 -5.355 -7.173 9.851 1.00 0.00 O ATOM 485 CB TYR 64 -6.304 -9.972 8.826 1.00 0.00 C ATOM 486 CG TYR 64 -6.058 -10.958 7.694 1.00 0.00 C ATOM 487 CD1 TYR 64 -7.109 -11.546 6.961 1.00 0.00 C ATOM 488 CD2 TYR 64 -4.736 -11.317 7.398 1.00 0.00 C ATOM 489 CE1 TYR 64 -6.837 -12.527 5.991 1.00 0.00 C ATOM 490 CE2 TYR 64 -4.446 -12.268 6.410 1.00 0.00 C ATOM 491 CZ TYR 64 -5.513 -12.901 5.714 1.00 0.00 C ATOM 492 OH TYR 64 -5.290 -13.825 4.725 1.00 0.00 H ATOM 493 N ASN 65 -7.439 -7.365 10.553 1.00 0.00 N ATOM 494 CA ASN 65 -7.184 -6.547 11.711 1.00 0.00 C ATOM 495 C ASN 65 -6.197 -7.273 12.637 1.00 0.00 C ATOM 496 O ASN 65 -6.416 -8.441 12.948 1.00 0.00 O ATOM 497 CB ASN 65 -8.532 -6.278 12.412 1.00 0.00 C ATOM 498 CG ASN 65 -8.393 -5.645 13.813 1.00 0.00 C ATOM 499 OD1 ASN 65 -7.804 -4.581 13.969 1.00 0.00 O ATOM 500 ND2 ASN 65 -8.963 -6.237 14.857 1.00 0.00 N ATOM 501 N GLU 66 -5.062 -6.672 12.963 1.00 0.00 N ATOM 502 CA GLU 66 -4.033 -7.162 13.843 1.00 0.00 C ATOM 503 C GLU 66 -4.644 -7.647 15.140 1.00 0.00 C ATOM 504 O GLU 66 -5.398 -6.905 15.765 1.00 0.00 O ATOM 505 CB GLU 66 -3.102 -6.010 14.108 1.00 0.00 C ATOM 506 CG GLU 66 -2.197 -6.228 15.329 1.00 0.00 C ATOM 507 CD GLU 66 -2.811 -5.729 16.642 1.00 0.00 C ATOM 508 OE1 GLU 66 -3.647 -4.791 16.598 1.00 0.00 O ATOM 509 OE2 GLU 66 -2.405 -6.234 17.706 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 493 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 45.44 83.3 126 100.0 126 ARMSMC SECONDARY STRUCTURE . . 33.67 87.5 96 100.0 96 ARMSMC SURFACE . . . . . . . . 52.48 78.9 90 100.0 90 ARMSMC BURIED . . . . . . . . 18.47 94.4 36 100.0 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.16 56.9 51 100.0 51 ARMSSC1 RELIABLE SIDE CHAINS . 71.02 59.1 44 100.0 44 ARMSSC1 SECONDARY STRUCTURE . . 73.68 57.9 38 100.0 38 ARMSSC1 SURFACE . . . . . . . . 77.32 51.4 37 100.0 37 ARMSSC1 BURIED . . . . . . . . 69.11 71.4 14 100.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.29 42.5 40 100.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 78.82 48.1 27 100.0 27 ARMSSC2 SECONDARY STRUCTURE . . 90.87 41.4 29 100.0 29 ARMSSC2 SURFACE . . . . . . . . 84.07 40.6 32 100.0 32 ARMSSC2 BURIED . . . . . . . . 94.67 50.0 8 100.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.48 37.5 16 100.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 75.48 37.5 16 100.0 16 ARMSSC3 SECONDARY STRUCTURE . . 87.94 27.3 11 100.0 11 ARMSSC3 SURFACE . . . . . . . . 75.48 37.5 16 100.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 99.35 22.2 9 100.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 99.35 22.2 9 100.0 9 ARMSSC4 SECONDARY STRUCTURE . . 100.58 16.7 6 100.0 6 ARMSSC4 SURFACE . . . . . . . . 99.35 22.2 9 100.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.35 (Number of atoms: 64) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.35 64 100.0 64 CRMSCA CRN = ALL/NP . . . . . 0.0679 CRMSCA SECONDARY STRUCTURE . . 4.04 48 100.0 48 CRMSCA SURFACE . . . . . . . . 4.51 46 100.0 46 CRMSCA BURIED . . . . . . . . 3.89 18 100.0 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.30 315 100.0 315 CRMSMC SECONDARY STRUCTURE . . 4.04 237 100.0 237 CRMSMC SURFACE . . . . . . . . 4.44 225 100.0 225 CRMSMC BURIED . . . . . . . . 3.92 90 100.0 90 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.79 237 31.5 752 CRMSSC RELIABLE SIDE CHAINS . 5.93 195 27.5 710 CRMSSC SECONDARY STRUCTURE . . 5.24 181 31.2 580 CRMSSC SURFACE . . . . . . . . 6.14 177 32.6 543 CRMSSC BURIED . . . . . . . . 4.62 60 28.7 209 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.02 493 48.9 1008 CRMSALL SECONDARY STRUCTURE . . 4.62 373 48.3 772 CRMSALL SURFACE . . . . . . . . 5.30 361 49.7 727 CRMSALL BURIED . . . . . . . . 4.18 132 47.0 281 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.266 1.000 0.500 64 100.0 64 ERRCA SECONDARY STRUCTURE . . 3.102 1.000 0.500 48 100.0 48 ERRCA SURFACE . . . . . . . . 3.383 1.000 0.500 46 100.0 46 ERRCA BURIED . . . . . . . . 2.967 1.000 0.500 18 100.0 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.233 1.000 0.500 315 100.0 315 ERRMC SECONDARY STRUCTURE . . 3.114 1.000 0.500 237 100.0 237 ERRMC SURFACE . . . . . . . . 3.322 1.000 0.500 225 100.0 225 ERRMC BURIED . . . . . . . . 3.013 1.000 0.500 90 100.0 90 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.255 1.000 0.500 237 31.5 752 ERRSC RELIABLE SIDE CHAINS . 4.283 1.000 0.500 195 27.5 710 ERRSC SECONDARY STRUCTURE . . 3.856 1.000 0.500 181 31.2 580 ERRSC SURFACE . . . . . . . . 4.526 1.000 0.500 177 32.6 543 ERRSC BURIED . . . . . . . . 3.457 1.000 0.500 60 28.7 209 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.700 1.000 0.500 493 48.9 1008 ERRALL SECONDARY STRUCTURE . . 3.463 1.000 0.500 373 48.3 772 ERRALL SURFACE . . . . . . . . 3.888 1.000 0.500 361 49.7 727 ERRALL BURIED . . . . . . . . 3.189 1.000 0.500 132 47.0 281 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 4 17 44 59 60 64 64 DISTCA CA (P) 6.25 26.56 68.75 92.19 93.75 64 DISTCA CA (RMS) 0.69 1.44 2.26 2.66 2.86 DISTCA ALL (N) 26 109 283 427 461 493 1008 DISTALL ALL (P) 2.58 10.81 28.08 42.36 45.73 1008 DISTALL ALL (RMS) 0.73 1.41 2.24 2.81 3.22 DISTALL END of the results output