####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 51 ( 204), selected 51 , name T0560AL396_1-D1 # Molecule2: number of CA atoms 64 ( 1008), selected 51 , name T0560-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0560AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 8 - 58 2.35 2.35 LCS_AVERAGE: 79.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 50 8 - 57 1.78 2.37 LCS_AVERAGE: 76.72 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 23 - 55 0.99 2.52 LCS_AVERAGE: 39.98 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 51 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 8 A 8 13 50 51 4 14 28 39 45 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT N 9 N 9 13 50 51 7 21 39 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 10 A 10 13 50 51 7 22 39 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT G 11 G 11 13 50 51 7 22 39 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT K 12 K 12 13 50 51 7 22 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT V 13 V 13 13 50 51 7 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT W 14 W 14 13 50 51 7 22 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT H 15 H 15 13 50 51 7 22 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 16 A 16 13 50 51 8 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT L 17 L 17 13 50 51 8 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT N 18 N 18 13 50 51 5 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT E 19 E 19 13 50 51 8 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 20 A 20 13 50 51 5 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT D 21 D 21 4 50 51 0 3 4 13 37 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT G 22 G 22 14 50 51 0 3 8 35 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT I 23 I 23 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT S 24 S 24 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT I 25 I 25 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT P 26 P 26 33 50 51 6 24 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT E 27 E 27 33 50 51 4 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT L 28 L 28 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 29 A 29 33 50 51 4 16 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT R 30 R 30 33 50 51 8 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT K 31 K 31 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT V 32 V 32 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT N 33 N 33 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT L 34 L 34 33 50 51 5 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT S 35 S 35 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT V 36 V 36 33 50 51 7 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT E 37 E 37 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT S 38 S 38 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT T 39 T 39 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 40 A 40 33 50 51 6 20 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT L 41 L 41 33 50 51 6 20 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 42 A 42 33 50 51 6 24 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT V 43 V 43 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT G 44 G 44 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT W 45 W 45 33 50 51 6 20 38 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT L 46 L 46 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT A 47 A 47 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT R 48 R 48 33 50 51 6 11 35 44 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT E 49 E 49 33 50 51 4 26 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT N 50 N 50 33 50 51 6 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT K 51 K 51 33 50 51 8 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT V 52 V 52 33 50 51 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT V 53 V 53 33 50 51 4 20 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT I 54 I 54 33 50 51 4 17 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT E 55 E 55 33 50 51 7 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT R 56 R 56 23 50 51 3 7 18 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 LCS_GDT K 57 K 57 3 50 51 3 3 4 4 4 7 8 22 45 48 50 50 50 50 50 51 51 51 51 51 LCS_GDT N 58 N 58 3 4 51 3 3 4 4 4 4 6 7 9 9 9 9 27 33 48 51 51 51 51 51 LCS_AVERAGE LCS_A: 65.46 ( 39.98 76.72 79.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 27 40 45 46 49 49 49 49 49 50 50 50 50 50 51 51 51 51 51 GDT PERCENT_AT 15.62 42.19 62.50 70.31 71.88 76.56 76.56 76.56 76.56 76.56 78.12 78.12 78.12 78.12 78.12 79.69 79.69 79.69 79.69 79.69 GDT RMS_LOCAL 0.40 0.73 0.97 1.11 1.14 1.43 1.43 1.43 1.43 1.43 1.78 1.78 1.78 1.78 1.78 2.35 2.35 2.35 2.35 2.35 GDT RMS_ALL_AT 2.62 2.43 2.41 2.39 2.40 2.41 2.41 2.41 2.41 2.41 2.37 2.37 2.37 2.37 2.37 2.35 2.35 2.35 2.35 2.35 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 8 A 8 3.292 1 0.571 0.571 6.022 45.357 36.286 LGA N 9 N 9 1.592 4 0.109 0.109 2.313 75.119 37.560 LGA A 10 A 10 1.715 1 0.091 0.091 1.715 75.000 60.000 LGA G 11 G 11 1.741 0 0.033 0.033 1.783 77.143 77.143 LGA K 12 K 12 1.163 5 0.032 0.032 1.353 85.952 38.201 LGA V 13 V 13 0.800 3 0.050 0.050 0.862 90.476 51.701 LGA W 14 W 14 1.108 10 0.037 0.037 1.108 85.952 24.558 LGA H 15 H 15 1.095 6 0.053 0.053 1.095 85.952 34.381 LGA A 16 A 16 0.486 1 0.165 0.165 0.571 97.619 78.095 LGA L 17 L 17 0.550 4 0.046 0.046 0.847 92.857 46.429 LGA N 18 N 18 1.000 4 0.084 0.084 1.241 88.214 44.107 LGA E 19 E 19 0.475 5 0.077 0.077 0.504 97.619 43.386 LGA A 20 A 20 0.701 1 0.581 0.581 4.038 73.095 58.476 LGA D 21 D 21 3.750 4 0.663 0.663 4.004 49.167 24.583 LGA G 22 G 22 3.481 0 0.643 0.643 4.181 45.119 45.119 LGA I 23 I 23 0.490 4 0.066 0.066 0.490 100.000 50.000 LGA S 24 S 24 0.473 2 0.046 0.046 0.473 100.000 66.667 LGA I 25 I 25 0.381 4 0.083 0.083 0.521 95.238 47.619 LGA P 26 P 26 1.231 3 0.090 0.090 1.231 88.214 50.408 LGA E 27 E 27 0.814 5 0.076 0.076 0.814 90.476 40.212 LGA L 28 L 28 1.187 4 0.043 0.043 1.430 83.690 41.845 LGA A 29 A 29 1.243 1 0.113 0.113 1.243 88.214 70.571 LGA R 30 R 30 0.486 7 0.029 0.029 0.697 97.619 35.498 LGA K 31 K 31 0.705 5 0.044 0.044 0.796 92.857 41.270 LGA V 32 V 32 1.055 3 0.027 0.027 1.055 85.952 49.116 LGA N 33 N 33 0.799 4 0.025 0.025 0.929 90.476 45.238 LGA L 34 L 34 1.103 4 0.074 0.074 1.103 85.952 42.976 LGA S 35 S 35 0.506 2 0.033 0.033 0.640 90.476 60.317 LGA V 36 V 36 0.987 3 0.034 0.034 1.224 85.952 49.116 LGA E 37 E 37 0.865 5 0.039 0.039 0.897 90.476 40.212 LGA S 38 S 38 0.831 2 0.034 0.034 1.041 88.214 58.810 LGA T 39 T 39 1.232 3 0.032 0.032 1.585 81.548 46.599 LGA A 40 A 40 1.712 1 0.032 0.032 1.856 72.857 58.286 LGA L 41 L 41 1.604 4 0.051 0.051 1.648 77.143 38.571 LGA A 42 A 42 1.464 1 0.043 0.043 1.697 79.286 63.429 LGA V 43 V 43 0.996 3 0.084 0.084 1.049 88.214 50.408 LGA G 44 G 44 1.351 0 0.033 0.033 1.635 77.143 77.143 LGA W 45 W 45 2.029 10 0.131 0.131 2.455 68.810 19.660 LGA L 46 L 46 1.059 4 0.020 0.020 1.289 85.952 42.976 LGA A 47 A 47 0.843 1 0.081 0.081 1.237 85.952 68.762 LGA R 48 R 48 2.352 7 0.133 0.133 2.352 72.976 26.537 LGA E 49 E 49 1.523 5 0.052 0.052 1.627 77.143 34.286 LGA N 50 N 50 1.047 4 0.037 0.037 1.164 85.952 42.976 LGA K 51 K 51 0.940 5 0.077 0.077 0.940 90.476 40.212 LGA V 52 V 52 0.250 3 0.127 0.127 0.438 100.000 57.143 LGA V 53 V 53 1.242 3 0.133 0.133 2.027 77.381 44.218 LGA I 54 I 54 1.363 4 0.167 0.167 1.961 79.286 39.643 LGA E 55 E 55 0.762 5 0.665 0.665 2.426 84.048 37.354 LGA R 56 R 56 1.969 7 0.213 0.213 6.680 45.595 16.580 LGA K 57 K 57 7.858 5 0.034 0.034 8.205 12.857 5.714 LGA N 58 N 58 11.640 4 0.038 0.038 11.640 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 51 204 204 100.00 390 204 52.31 64 SUMMARY(RMSD_GDC): 2.348 2.314 2.314 63.454 35.944 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 51 64 4.0 49 1.43 67.188 72.468 3.206 LGA_LOCAL RMSD: 1.429 Number of atoms: 49 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.414 Number of assigned atoms: 51 Std_ASGN_ATOMS RMSD: 2.348 Standard rmsd on all 51 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.741296 * X + -0.567461 * Y + -0.358425 * Z + -21.175259 Y_new = -0.315118 * X + 0.765763 * Y + -0.560631 * Z + 12.323906 Z_new = 0.592605 * X + -0.302648 * Y + -0.746474 * Z + 18.813976 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.739645 -0.634289 -2.756409 [DEG: -156.9701 -36.3421 -157.9306 ] ZXZ: -0.568834 2.413544 2.042973 [DEG: -32.5918 138.2859 117.0537 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0560AL396_1-D1 REMARK 2: T0560-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0560AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 51 64 4.0 49 1.43 72.468 2.35 REMARK ---------------------------------------------------------- MOLECULE T0560AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1j75_A ATOM 1 N ALA 8 -12.812 10.472 6.162 1.00 0.00 N ATOM 2 CA ALA 8 -11.553 9.761 6.508 1.00 0.00 C ATOM 3 C ALA 8 -11.534 8.340 5.935 1.00 0.00 C ATOM 4 O ALA 8 -12.374 7.477 6.257 1.00 0.00 O ATOM 5 N ASN 9 -10.658 8.164 4.976 1.00 0.00 N ATOM 6 CA ASN 9 -10.387 6.894 4.383 1.00 0.00 C ATOM 7 C ASN 9 -9.892 5.870 5.408 1.00 0.00 C ATOM 8 O ASN 9 -10.286 4.702 5.384 1.00 0.00 O ATOM 9 N ALA 10 -9.028 6.328 6.296 1.00 0.00 N ATOM 10 CA ALA 10 -8.475 5.468 7.329 1.00 0.00 C ATOM 11 C ALA 10 -9.583 4.764 8.158 1.00 0.00 C ATOM 12 O ALA 10 -9.531 3.538 8.367 1.00 0.00 O ATOM 13 N GLY 11 -10.586 5.512 8.605 1.00 0.00 N ATOM 14 CA GLY 11 -11.661 4.925 9.403 1.00 0.00 C ATOM 15 C GLY 11 -12.484 3.977 8.572 1.00 0.00 C ATOM 16 O GLY 11 -12.899 2.941 9.056 1.00 0.00 O ATOM 17 N LYS 12 -12.712 4.337 7.307 1.00 0.00 N ATOM 18 CA LYS 12 -13.505 3.489 6.432 1.00 0.00 C ATOM 19 C LYS 12 -12.803 2.142 6.183 1.00 0.00 C ATOM 20 O LYS 12 -13.418 1.107 6.125 1.00 0.00 O ATOM 21 N VAL 13 -11.493 2.209 6.009 1.00 0.00 N ATOM 22 CA VAL 13 -10.710 0.978 5.793 1.00 0.00 C ATOM 23 C VAL 13 -10.801 0.096 7.025 1.00 0.00 C ATOM 24 O VAL 13 -11.058 -1.116 6.936 1.00 0.00 O ATOM 25 N TRP 14 -10.621 0.700 8.169 1.00 0.00 N ATOM 26 CA TRP 14 -10.647 -0.050 9.413 1.00 0.00 C ATOM 27 C TRP 14 -12.010 -0.706 9.643 1.00 0.00 C ATOM 28 O TRP 14 -12.075 -1.848 10.099 1.00 0.00 O ATOM 29 N HIS 15 -13.065 0.007 9.308 1.00 0.00 N ATOM 30 CA HIS 15 -14.422 -0.497 9.462 1.00 0.00 C ATOM 31 C HIS 15 -14.643 -1.701 8.573 1.00 0.00 C ATOM 32 O HIS 15 -15.166 -2.690 8.997 1.00 0.00 O ATOM 33 N ALA 16 -14.277 -1.555 7.301 1.00 0.00 N ATOM 34 CA ALA 16 -14.391 -2.620 6.347 1.00 0.00 C ATOM 35 C ALA 16 -13.684 -3.891 6.838 1.00 0.00 C ATOM 36 O ALA 16 -14.281 -4.970 6.868 1.00 0.00 O ATOM 37 N LEU 17 -12.444 -3.755 7.247 1.00 0.00 N ATOM 38 CA LEU 17 -11.636 -4.859 7.728 1.00 0.00 C ATOM 39 C LEU 17 -12.176 -5.521 8.994 1.00 0.00 C ATOM 40 O LEU 17 -12.170 -6.754 9.132 1.00 0.00 O ATOM 41 N ASN 18 -12.656 -4.690 9.904 1.00 0.00 N ATOM 42 CA ASN 18 -13.208 -5.155 11.185 1.00 0.00 C ATOM 43 C ASN 18 -14.515 -5.903 10.977 1.00 0.00 C ATOM 44 O ASN 18 -14.695 -6.993 11.477 1.00 0.00 O ATOM 45 N GLU 19 -15.413 -5.323 10.183 1.00 0.00 N ATOM 46 CA GLU 19 -16.668 -5.960 9.834 1.00 0.00 C ATOM 47 C GLU 19 -16.432 -7.307 9.154 1.00 0.00 C ATOM 48 O GLU 19 -17.098 -8.326 9.468 1.00 0.00 O ATOM 49 N ALA 20 -15.529 -7.332 8.192 1.00 0.00 N ATOM 50 CA ALA 20 -15.219 -8.591 7.515 1.00 0.00 C ATOM 51 C ALA 20 -14.701 -9.596 8.502 1.00 0.00 C ATOM 52 O ALA 20 -15.189 -10.759 8.576 1.00 0.00 O ATOM 53 N ASP 21 -13.683 -9.207 9.265 1.00 0.00 N ATOM 54 CA ASP 21 -13.130 -10.130 10.277 1.00 0.00 C ATOM 55 C ASP 21 -11.993 -11.021 9.775 1.00 0.00 C ATOM 56 O ASP 21 -11.201 -11.567 10.578 1.00 0.00 O ATOM 57 N GLY 22 -11.893 -11.189 8.459 1.00 0.00 N ATOM 58 CA GLY 22 -10.857 -12.014 7.897 1.00 0.00 C ATOM 59 C GLY 22 -10.031 -11.272 6.841 1.00 0.00 C ATOM 60 O GLY 22 -10.107 -10.069 6.719 1.00 0.00 O ATOM 61 N ILE 23 -8.891 -9.639 3.617 1.00 0.00 N ATOM 62 CA ILE 23 -9.633 -8.942 2.579 1.00 0.00 C ATOM 63 C ILE 23 -8.697 -8.528 1.471 1.00 0.00 C ATOM 64 O ILE 23 -7.614 -7.977 1.717 1.00 0.00 O ATOM 65 N SER 24 -9.085 -8.815 0.236 1.00 0.00 N ATOM 66 CA SER 24 -8.282 -8.462 -0.928 1.00 0.00 C ATOM 67 C SER 24 -8.363 -6.972 -1.260 1.00 0.00 C ATOM 68 O SER 24 -9.421 -6.357 -1.043 1.00 0.00 O ATOM 69 N ILE 25 -7.297 -6.409 -1.798 1.00 0.00 N ATOM 70 CA ILE 25 -7.264 -4.977 -2.153 1.00 0.00 C ATOM 71 C ILE 25 -8.407 -4.651 -3.051 1.00 0.00 C ATOM 72 O ILE 25 -9.059 -3.615 -2.877 1.00 0.00 O ATOM 73 N PRO 26 -8.720 -5.540 -3.986 1.00 0.00 N ATOM 74 CA PRO 26 -9.789 -5.354 -4.924 1.00 0.00 C ATOM 75 C PRO 26 -11.146 -5.207 -4.209 1.00 0.00 C ATOM 76 O PRO 26 -12.007 -4.387 -4.601 1.00 0.00 O ATOM 77 N GLU 27 -11.319 -5.990 -3.171 1.00 0.00 N ATOM 78 CA GLU 27 -12.571 -5.908 -2.394 1.00 0.00 C ATOM 79 C GLU 27 -12.646 -4.606 -1.637 1.00 0.00 C ATOM 80 O GLU 27 -13.760 -4.066 -1.446 1.00 0.00 O ATOM 81 N LEU 28 -11.523 -4.082 -1.177 1.00 0.00 N ATOM 82 CA LEU 28 -11.503 -2.771 -0.507 1.00 0.00 C ATOM 83 C LEU 28 -11.855 -1.620 -1.471 1.00 0.00 C ATOM 84 O LEU 28 -12.489 -0.660 -1.077 1.00 0.00 O ATOM 85 N ALA 29 -11.402 -1.710 -2.721 1.00 0.00 N ATOM 86 CA ALA 29 -11.806 -0.719 -3.736 1.00 0.00 C ATOM 87 C ALA 29 -13.315 -0.592 -3.841 1.00 0.00 C ATOM 88 O ALA 29 -13.861 0.514 -3.814 1.00 0.00 O ATOM 89 N ARG 30 -14.019 -1.732 -3.953 1.00 0.00 N ATOM 90 CA ARG 30 -15.480 -1.668 -4.058 1.00 0.00 C ATOM 91 C ARG 30 -16.126 -1.051 -2.855 1.00 0.00 C ATOM 92 O ARG 30 -17.102 -0.283 -2.948 1.00 0.00 O ATOM 93 N LYS 31 -15.592 -1.437 -1.683 1.00 0.00 N ATOM 94 CA LYS 31 -16.139 -1.040 -0.418 1.00 0.00 C ATOM 95 C LYS 31 -15.808 0.407 -0.058 1.00 0.00 C ATOM 96 O LYS 31 -16.644 1.100 0.514 1.00 0.00 O ATOM 97 N VAL 32 -14.593 0.862 -0.410 1.00 0.00 N ATOM 98 CA VAL 32 -14.138 2.202 -0.096 1.00 0.00 C ATOM 99 C VAL 32 -14.262 3.197 -1.241 1.00 0.00 C ATOM 100 O VAL 32 -14.169 4.421 -1.037 1.00 0.00 O ATOM 101 N ASN 33 -14.441 2.707 -2.442 1.00 0.00 N ATOM 102 CA ASN 33 -14.706 3.588 -3.604 1.00 0.00 C ATOM 103 C ASN 33 -13.599 4.595 -3.892 1.00 0.00 C ATOM 104 O ASN 33 -13.855 5.777 -4.219 1.00 0.00 O ATOM 105 N LEU 34 -12.361 4.117 -3.802 1.00 0.00 N ATOM 106 CA LEU 34 -11.179 4.847 -4.107 1.00 0.00 C ATOM 107 C LEU 34 -10.261 3.837 -4.747 1.00 0.00 C ATOM 108 O LEU 34 -10.389 2.617 -4.547 1.00 0.00 O ATOM 109 N SER 35 -9.334 4.355 -5.510 1.00 0.00 N ATOM 110 CA SER 35 -8.338 3.571 -6.239 1.00 0.00 C ATOM 111 C SER 35 -7.389 2.825 -5.365 1.00 0.00 C ATOM 112 O SER 35 -7.133 3.188 -4.220 1.00 0.00 O ATOM 113 N VAL 36 -6.846 1.772 -5.927 1.00 0.00 N ATOM 114 CA VAL 36 -5.934 0.870 -5.201 1.00 0.00 C ATOM 115 C VAL 36 -4.717 1.606 -4.634 1.00 0.00 C ATOM 116 O VAL 36 -4.318 1.390 -3.485 1.00 0.00 O ATOM 117 N GLU 37 -4.086 2.441 -5.477 1.00 0.00 N ATOM 118 CA GLU 37 -2.918 3.205 -5.026 1.00 0.00 C ATOM 119 C GLU 37 -3.255 3.988 -3.758 1.00 0.00 C ATOM 120 O GLU 37 -2.498 3.994 -2.787 1.00 0.00 O ATOM 121 N SER 38 -4.372 4.686 -3.776 1.00 0.00 N ATOM 122 CA SER 38 -4.790 5.467 -2.619 1.00 0.00 C ATOM 123 C SER 38 -4.983 4.621 -1.380 1.00 0.00 C ATOM 124 O SER 38 -4.632 5.015 -0.292 1.00 0.00 O ATOM 125 N THR 39 -5.558 3.435 -1.556 1.00 0.00 N ATOM 126 CA THR 39 -5.743 2.524 -0.442 1.00 0.00 C ATOM 127 C THR 39 -4.424 2.062 0.100 1.00 0.00 C ATOM 128 O THR 39 -4.213 2.033 1.307 1.00 0.00 O ATOM 129 N ALA 40 -3.530 1.684 -0.796 1.00 0.00 N ATOM 130 CA ALA 40 -2.243 1.147 -0.361 1.00 0.00 C ATOM 131 C ALA 40 -1.402 2.167 0.386 1.00 0.00 C ATOM 132 O ALA 40 -0.749 1.828 1.346 1.00 0.00 O ATOM 133 N LEU 41 -1.486 3.431 -0.022 1.00 0.00 N ATOM 134 CA LEU 41 -0.732 4.452 0.728 1.00 0.00 C ATOM 135 C LEU 41 -1.148 4.408 2.221 1.00 0.00 C ATOM 136 O LEU 41 -0.326 4.464 3.116 1.00 0.00 O ATOM 137 N ALA 42 -2.443 4.324 2.476 1.00 0.00 N ATOM 138 CA ALA 42 -2.978 4.265 3.841 1.00 0.00 C ATOM 139 C ALA 42 -2.704 2.913 4.498 1.00 0.00 C ATOM 140 O ALA 42 -2.202 2.839 5.623 1.00 0.00 O ATOM 141 N VAL 43 -2.995 1.822 3.773 1.00 0.00 N ATOM 142 CA VAL 43 -2.757 0.471 4.296 1.00 0.00 C ATOM 143 C VAL 43 -1.356 0.236 4.760 1.00 0.00 C ATOM 144 O VAL 43 -1.133 -0.282 5.858 1.00 0.00 O ATOM 145 N GLY 44 -0.368 0.632 3.940 1.00 0.00 N ATOM 146 CA GLY 44 1.010 0.401 4.318 1.00 0.00 C ATOM 147 C GLY 44 1.404 1.283 5.510 1.00 0.00 C ATOM 148 O GLY 44 2.243 0.910 6.336 1.00 0.00 O ATOM 149 N TRP 45 0.790 2.436 5.591 1.00 0.00 N ATOM 150 CA TRP 45 1.057 3.281 6.734 1.00 0.00 C ATOM 151 C TRP 45 0.491 2.602 7.988 1.00 0.00 C ATOM 152 O TRP 45 1.199 2.387 8.967 1.00 0.00 O ATOM 153 N LEU 46 -0.774 2.196 7.905 1.00 0.00 N ATOM 154 CA LEU 46 -1.415 1.505 9.021 1.00 0.00 C ATOM 155 C LEU 46 -0.590 0.296 9.437 1.00 0.00 C ATOM 156 O LEU 46 -0.433 0.028 10.639 1.00 0.00 O ATOM 157 N ALA 47 -0.022 -0.407 8.469 1.00 0.00 N ATOM 158 CA ALA 47 0.759 -1.591 8.746 1.00 0.00 C ATOM 159 C ALA 47 2.034 -1.258 9.533 1.00 0.00 C ATOM 160 O ALA 47 2.418 -1.980 10.442 1.00 0.00 O ATOM 161 N ARG 48 2.660 -0.159 9.178 1.00 0.00 N ATOM 162 CA ARG 48 3.883 0.265 9.821 1.00 0.00 C ATOM 163 C ARG 48 3.559 0.712 11.249 1.00 0.00 C ATOM 164 O ARG 48 4.440 0.785 12.109 1.00 0.00 O ATOM 165 N GLU 49 2.293 1.026 11.468 1.00 0.00 N ATOM 166 CA GLU 49 1.787 1.411 12.768 1.00 0.00 C ATOM 167 C GLU 49 1.256 0.202 13.528 1.00 0.00 C ATOM 168 O GLU 49 0.619 0.370 14.554 1.00 0.00 O ATOM 169 N ASN 50 1.505 -1.011 13.033 1.00 0.00 N ATOM 170 CA ASN 50 1.011 -2.241 13.679 1.00 0.00 C ATOM 171 C ASN 50 -0.529 -2.247 13.844 1.00 0.00 C ATOM 172 O ASN 50 -1.060 -2.895 14.737 1.00 0.00 O ATOM 173 N LYS 51 -1.232 -1.561 12.957 1.00 0.00 N ATOM 174 CA LYS 51 -2.699 -1.448 13.032 1.00 0.00 C ATOM 175 C LYS 51 -3.490 -2.291 12.036 1.00 0.00 C ATOM 176 O LYS 51 -4.719 -2.335 12.133 1.00 0.00 O ATOM 177 N VAL 52 -2.780 -2.882 11.051 1.00 0.00 N ATOM 178 CA VAL 52 -3.327 -3.861 10.166 1.00 0.00 C ATOM 179 C VAL 52 -2.178 -4.776 9.870 1.00 0.00 C ATOM 180 O VAL 52 -1.048 -4.485 10.234 1.00 0.00 O ATOM 181 N VAL 53 -2.445 -5.896 9.217 1.00 0.00 N ATOM 182 CA VAL 53 -1.416 -6.844 8.839 1.00 0.00 C ATOM 183 C VAL 53 -1.729 -7.284 7.455 1.00 0.00 C ATOM 184 O VAL 53 -2.857 -7.088 6.985 1.00 0.00 O ATOM 185 N ILE 54 -0.740 -7.868 6.802 1.00 0.00 N ATOM 186 CA ILE 54 -0.887 -8.380 5.473 1.00 0.00 C ATOM 187 C ILE 54 -0.411 -9.800 5.537 1.00 0.00 C ATOM 188 O ILE 54 0.791 -10.058 5.317 1.00 0.00 O ATOM 189 N GLU 55 -1.313 -10.729 5.838 1.00 0.00 N ATOM 190 CA GLU 55 -0.934 -12.137 5.949 1.00 0.00 C ATOM 191 C GLU 55 -0.569 -12.731 4.612 1.00 0.00 C ATOM 192 O GLU 55 0.053 -13.757 4.573 1.00 0.00 O ATOM 193 N ARG 56 -1.017 -12.083 3.552 1.00 0.00 N ATOM 194 CA ARG 56 -0.701 -12.452 2.186 1.00 0.00 C ATOM 195 C ARG 56 -0.536 -11.199 1.375 1.00 0.00 C ATOM 196 O ARG 56 -1.013 -10.158 1.731 1.00 0.00 O ATOM 197 N LYS 57 0.087 -11.328 0.219 1.00 0.00 N ATOM 198 CA LYS 57 0.310 -10.163 -0.634 1.00 0.00 C ATOM 199 C LYS 57 -1.014 -9.577 -1.138 1.00 0.00 C ATOM 200 O LYS 57 -1.906 -10.292 -1.578 1.00 0.00 O ATOM 201 N ASN 58 -1.107 -8.255 -1.033 1.00 0.00 N ATOM 202 CA ASN 58 -2.290 -7.491 -1.436 1.00 0.00 C ATOM 203 C ASN 58 -3.522 -7.994 -0.708 1.00 0.00 C ATOM 204 O ASN 58 -4.632 -7.878 -1.217 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 204 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 45.82 85.0 100 79.4 126 ARMSMC SECONDARY STRUCTURE . . 31.09 92.0 75 78.1 96 ARMSMC SURFACE . . . . . . . . 54.09 78.6 70 77.8 90 ARMSMC BURIED . . . . . . . . 13.17 100.0 30 83.3 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 38 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.35 (Number of atoms: 51) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.35 51 79.7 64 CRMSCA CRN = ALL/NP . . . . . 0.0460 CRMSCA SECONDARY STRUCTURE . . 1.69 38 79.2 48 CRMSCA SURFACE . . . . . . . . 2.68 36 78.3 46 CRMSCA BURIED . . . . . . . . 1.23 15 83.3 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.32 204 64.8 315 CRMSMC SECONDARY STRUCTURE . . 1.75 152 64.1 237 CRMSMC SURFACE . . . . . . . . 2.64 144 64.0 225 CRMSMC BURIED . . . . . . . . 1.24 60 66.7 90 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 752 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 710 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 580 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 543 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 209 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.32 204 20.2 1008 CRMSALL SECONDARY STRUCTURE . . 1.75 152 19.7 772 CRMSALL SURFACE . . . . . . . . 2.64 144 19.8 727 CRMSALL BURIED . . . . . . . . 1.24 60 21.4 281 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.598 1.000 0.500 51 79.7 64 ERRCA SECONDARY STRUCTURE . . 1.309 1.000 0.500 38 79.2 48 ERRCA SURFACE . . . . . . . . 1.803 1.000 0.500 36 78.3 46 ERRCA BURIED . . . . . . . . 1.105 1.000 0.500 15 83.3 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.584 1.000 0.500 204 64.8 315 ERRMC SECONDARY STRUCTURE . . 1.332 1.000 0.500 152 64.1 237 ERRMC SURFACE . . . . . . . . 1.784 1.000 0.500 144 64.0 225 ERRMC BURIED . . . . . . . . 1.105 1.000 0.500 60 66.7 90 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 752 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 710 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 580 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 543 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 209 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.584 1.000 0.500 204 20.2 1008 ERRALL SECONDARY STRUCTURE . . 1.332 1.000 0.500 152 19.7 772 ERRALL SURFACE . . . . . . . . 1.784 1.000 0.500 144 19.8 727 ERRALL BURIED . . . . . . . . 1.105 1.000 0.500 60 21.4 281 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 44 47 49 50 51 64 DISTCA CA (P) 26.56 68.75 73.44 76.56 78.12 64 DISTCA CA (RMS) 0.75 1.13 1.30 1.53 1.80 DISTCA ALL (N) 84 167 185 195 201 204 1008 DISTALL ALL (P) 8.33 16.57 18.35 19.35 19.94 1008 DISTALL ALL (RMS) 0.73 1.05 1.26 1.54 1.95 DISTALL END of the results output