####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 48 ( 192), selected 48 , name T0560AL285_1-D1 # Molecule2: number of CA atoms 64 ( 1008), selected 48 , name T0560-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0560AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 48 12 - 59 1.51 1.51 LCS_AVERAGE: 75.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 48 12 - 59 1.51 1.51 LCS_AVERAGE: 75.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 19 - 56 0.98 1.58 LONGEST_CONTINUOUS_SEGMENT: 38 20 - 57 1.00 1.58 LCS_AVERAGE: 56.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 48 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 12 K 12 31 48 48 7 22 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 13 V 13 31 48 48 7 27 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT W 14 W 14 31 48 48 7 27 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT H 15 H 15 31 48 48 7 22 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 16 A 16 32 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 17 L 17 32 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT N 18 N 18 32 48 48 3 24 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 19 E 19 38 48 48 5 24 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 20 A 20 38 48 48 5 26 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT D 21 D 21 38 48 48 3 3 33 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT G 22 G 22 38 48 48 8 26 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT I 23 I 23 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT S 24 S 24 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT I 25 I 25 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT P 26 P 26 38 48 48 6 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 27 E 27 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 28 L 28 38 48 48 6 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 29 A 29 38 48 48 6 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT R 30 R 30 38 48 48 6 27 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT K 31 K 31 38 48 48 5 18 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 32 V 32 38 48 48 7 23 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT N 33 N 33 38 48 48 7 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 34 L 34 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT S 35 S 35 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 36 V 36 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 37 E 37 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT S 38 S 38 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT T 39 T 39 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 40 A 40 38 48 48 8 24 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 41 L 41 38 48 48 8 26 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 42 A 42 38 48 48 8 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 43 V 43 38 48 48 6 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT G 44 G 44 38 48 48 7 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT W 45 W 45 38 48 48 6 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT L 46 L 46 38 48 48 8 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT A 47 A 47 38 48 48 5 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT R 48 R 48 38 48 48 6 22 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 49 E 49 38 48 48 6 25 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT N 50 N 50 38 48 48 7 26 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT K 51 K 51 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 52 V 52 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT V 53 V 53 38 48 48 6 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT I 54 I 54 38 48 48 8 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT E 55 E 55 38 48 48 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT R 56 R 56 38 48 48 5 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT K 57 K 57 38 48 48 4 7 39 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT N 58 N 58 37 48 48 5 25 42 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 LCS_GDT G 59 G 59 3 48 48 3 3 3 3 4 6 11 11 46 48 48 48 48 48 48 48 48 48 48 48 LCS_AVERAGE LCS_A: 68.90 ( 56.71 75.00 75.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 28 43 47 47 47 47 47 47 48 48 48 48 48 48 48 48 48 48 48 GDT PERCENT_AT 14.06 43.75 67.19 73.44 73.44 73.44 73.44 73.44 73.44 75.00 75.00 75.00 75.00 75.00 75.00 75.00 75.00 75.00 75.00 75.00 GDT RMS_LOCAL 0.30 0.75 0.98 1.08 1.08 1.08 1.08 1.08 1.08 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 GDT RMS_ALL_AT 1.74 1.57 1.64 1.56 1.56 1.56 1.56 1.56 1.56 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 12 K 12 1.559 5 0.023 0.023 1.648 77.143 34.286 LGA V 13 V 13 1.042 3 0.078 0.078 1.180 81.429 46.531 LGA W 14 W 14 0.964 10 0.070 0.070 1.011 88.214 25.204 LGA H 15 H 15 1.424 6 0.015 0.015 1.424 81.429 32.571 LGA A 16 A 16 0.813 1 0.144 0.144 0.996 90.476 72.381 LGA L 17 L 17 0.616 4 0.055 0.055 0.933 92.857 46.429 LGA N 18 N 18 1.645 4 0.043 0.043 1.807 75.000 37.500 LGA E 19 E 19 1.223 5 0.075 0.075 1.235 90.714 40.317 LGA A 20 A 20 1.222 1 0.618 0.618 3.059 76.071 60.857 LGA D 21 D 21 1.971 4 0.020 0.020 2.546 73.214 36.607 LGA G 22 G 22 1.314 0 0.536 0.536 1.943 79.286 79.286 LGA I 23 I 23 0.761 4 0.014 0.014 0.806 90.476 45.238 LGA S 24 S 24 0.561 2 0.041 0.041 0.668 90.476 60.317 LGA I 25 I 25 0.515 4 0.061 0.061 0.698 92.857 46.429 LGA P 26 P 26 0.957 3 0.083 0.083 0.957 90.476 51.701 LGA E 27 E 27 0.858 5 0.019 0.019 0.858 90.476 40.212 LGA L 28 L 28 0.981 4 0.030 0.030 0.981 90.476 45.238 LGA A 29 A 29 0.824 1 0.116 0.116 0.851 90.476 72.381 LGA R 30 R 30 1.250 7 0.050 0.050 1.311 81.429 29.610 LGA K 31 K 31 1.516 5 0.030 0.030 1.757 77.143 34.286 LGA V 32 V 32 1.342 3 0.039 0.039 1.481 81.429 46.531 LGA N 33 N 33 1.048 4 0.110 0.110 1.211 85.952 42.976 LGA L 34 L 34 0.644 4 0.032 0.032 0.809 95.238 47.619 LGA S 35 S 35 0.256 2 0.031 0.031 0.389 100.000 66.667 LGA V 36 V 36 0.542 3 0.059 0.059 0.709 92.857 53.061 LGA E 37 E 37 0.849 5 0.036 0.036 0.849 90.476 40.212 LGA S 38 S 38 0.594 2 0.056 0.056 0.700 92.857 61.905 LGA T 39 T 39 0.635 3 0.022 0.022 1.003 90.595 51.769 LGA A 40 A 40 1.348 1 0.039 0.039 1.467 81.429 65.143 LGA L 41 L 41 1.206 4 0.057 0.057 1.222 85.952 42.976 LGA A 42 A 42 0.818 1 0.034 0.034 1.080 88.214 70.571 LGA V 43 V 43 1.094 3 0.047 0.047 1.094 83.690 47.823 LGA G 44 G 44 0.960 0 0.081 0.081 1.016 88.214 88.214 LGA W 45 W 45 0.989 10 0.082 0.082 1.286 88.214 25.204 LGA L 46 L 46 0.517 4 0.040 0.040 0.690 90.476 45.238 LGA A 47 A 47 0.659 1 0.133 0.133 1.047 90.595 72.476 LGA R 48 R 48 1.508 7 0.059 0.059 1.508 83.810 30.476 LGA E 49 E 49 1.314 5 0.059 0.059 1.670 81.548 36.243 LGA N 50 N 50 1.259 4 0.064 0.064 1.422 83.690 41.845 LGA K 51 K 51 0.451 5 0.027 0.027 0.637 95.238 42.328 LGA V 52 V 52 0.642 3 0.047 0.047 0.665 92.857 53.061 LGA V 53 V 53 0.896 3 0.111 0.111 1.663 83.810 47.891 LGA I 54 I 54 0.858 4 0.128 0.128 1.329 88.214 44.107 LGA E 55 E 55 0.738 5 0.025 0.025 0.810 90.476 40.212 LGA R 56 R 56 0.879 7 0.139 0.139 3.217 75.952 27.619 LGA K 57 K 57 1.921 5 0.041 0.041 1.921 83.810 37.249 LGA N 58 N 58 1.516 4 0.337 0.337 5.471 53.810 26.905 LGA G 59 G 59 7.853 0 0.372 0.372 9.610 9.643 9.643 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 48 192 192 100.00 372 192 51.61 64 SUMMARY(RMSD_GDC): 1.515 1.574 1.574 63.268 35.052 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 48 64 4.0 47 1.08 66.406 71.395 3.975 LGA_LOCAL RMSD: 1.082 Number of atoms: 47 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.560 Number of assigned atoms: 48 Std_ASGN_ATOMS RMSD: 1.515 Standard rmsd on all 48 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.962745 * X + -0.183848 * Y + 0.198295 * Z + -18.640425 Y_new = -0.033191 * X + 0.647428 * Y + 0.761404 * Z + -5.978993 Z_new = -0.268364 * X + -0.739620 * Y + 0.617206 * Z + 42.453926 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.034462 0.271695 -0.875375 [DEG: -1.9745 15.5670 -50.1553 ] ZXZ: 2.886818 0.905610 -2.793524 [DEG: 165.4025 51.8876 -160.0571 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0560AL285_1-D1 REMARK 2: T0560-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0560AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 48 64 4.0 47 1.08 71.395 1.51 REMARK ---------------------------------------------------------- MOLECULE T0560AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1sfxA ATOM 1 N LYS 12 -12.720 3.965 7.826 1.00 0.00 N ATOM 2 CA LYS 12 -13.566 3.137 6.974 1.00 0.00 C ATOM 3 C LYS 12 -12.881 1.817 6.626 1.00 0.00 C ATOM 4 O LYS 12 -13.509 0.767 6.682 1.00 0.00 O ATOM 5 N VAL 13 -11.595 1.880 6.285 1.00 0.00 N ATOM 6 CA VAL 13 -10.835 0.675 5.939 1.00 0.00 C ATOM 7 C VAL 13 -10.736 -0.244 7.149 1.00 0.00 C ATOM 8 O VAL 13 -11.092 -1.430 7.085 1.00 0.00 O ATOM 9 N TRP 14 -10.255 0.307 8.264 1.00 0.00 N ATOM 10 CA TRP 14 -10.128 -0.473 9.481 1.00 0.00 C ATOM 11 C TRP 14 -11.465 -1.122 9.880 1.00 0.00 C ATOM 12 O TRP 14 -11.512 -2.305 10.175 1.00 0.00 O ATOM 13 N HIS 15 -12.546 -0.345 9.884 1.00 0.00 N ATOM 14 CA HIS 15 -13.852 -0.835 10.333 1.00 0.00 C ATOM 15 C HIS 15 -14.405 -1.922 9.407 1.00 0.00 C ATOM 16 O HIS 15 -14.963 -2.916 9.867 1.00 0.00 O ATOM 17 N ALA 16 -14.211 -1.743 8.103 1.00 0.00 N ATOM 18 CA ALA 16 -14.593 -2.756 7.119 1.00 0.00 C ATOM 19 C ALA 16 -13.868 -4.076 7.389 1.00 0.00 C ATOM 20 O ALA 16 -14.486 -5.138 7.418 1.00 0.00 O ATOM 21 N LEU 17 -12.557 -4.009 7.595 1.00 0.00 N ATOM 22 CA LEU 17 -11.779 -5.223 7.832 1.00 0.00 C ATOM 23 C LEU 17 -12.177 -5.892 9.154 1.00 0.00 C ATOM 24 O LEU 17 -12.303 -7.114 9.224 1.00 0.00 O ATOM 25 N ASN 18 -12.355 -5.108 10.215 1.00 0.00 N ATOM 26 CA ASN 18 -12.763 -5.700 11.489 1.00 0.00 C ATOM 27 C ASN 18 -14.091 -6.438 11.348 1.00 0.00 C ATOM 28 O ASN 18 -14.263 -7.524 11.895 1.00 0.00 O ATOM 29 N GLU 19 -15.011 -5.855 10.585 1.00 0.00 N ATOM 30 CA GLU 19 -16.335 -6.445 10.404 1.00 0.00 C ATOM 31 C GLU 19 -16.328 -7.683 9.502 1.00 0.00 C ATOM 32 O GLU 19 -16.951 -8.691 9.841 1.00 0.00 O ATOM 33 N ALA 20 -15.630 -7.596 8.370 1.00 0.00 N ATOM 34 CA ALA 20 -15.740 -8.569 7.289 1.00 0.00 C ATOM 35 C ALA 20 -14.645 -9.634 7.281 1.00 0.00 C ATOM 36 O ALA 20 -14.809 -10.698 6.678 1.00 0.00 O ATOM 37 N ASP 21 -13.529 -9.366 7.937 1.00 0.00 N ATOM 38 CA ASP 21 -12.374 -10.242 7.836 1.00 0.00 C ATOM 39 C ASP 21 -11.349 -9.750 6.828 1.00 0.00 C ATOM 40 O ASP 21 -11.512 -8.700 6.219 1.00 0.00 O ATOM 41 N GLY 22 -10.265 -10.503 6.663 1.00 0.00 N ATOM 42 CA GLY 22 -9.182 -10.071 5.795 1.00 0.00 C ATOM 43 C GLY 22 -9.627 -9.922 4.350 1.00 0.00 C ATOM 44 O GLY 22 -10.393 -10.749 3.847 1.00 0.00 O ATOM 45 N ILE 23 -9.132 -8.885 3.682 1.00 0.00 N ATOM 46 CA ILE 23 -9.522 -8.565 2.313 1.00 0.00 C ATOM 47 C ILE 23 -8.333 -8.139 1.450 1.00 0.00 C ATOM 48 O ILE 23 -7.355 -7.574 1.932 1.00 0.00 O ATOM 49 N SER 24 -8.453 -8.392 0.151 1.00 0.00 N ATOM 50 CA SER 24 -7.507 -7.898 -0.837 1.00 0.00 C ATOM 51 C SER 24 -7.653 -6.401 -0.998 1.00 0.00 C ATOM 52 O SER 24 -8.733 -5.849 -0.797 1.00 0.00 O ATOM 53 N ILE 25 -6.597 -5.758 -1.465 1.00 0.00 N ATOM 54 CA ILE 25 -6.688 -4.366 -1.901 1.00 0.00 C ATOM 55 C ILE 25 -7.870 -4.152 -2.864 1.00 0.00 C ATOM 56 O ILE 25 -8.630 -3.201 -2.714 1.00 0.00 O ATOM 57 N PRO 26 -8.026 -5.043 -3.836 1.00 0.00 N ATOM 58 CA PRO 26 -9.042 -4.868 -4.871 1.00 0.00 C ATOM 59 C PRO 26 -10.445 -4.913 -4.267 1.00 0.00 C ATOM 60 O PRO 26 -11.341 -4.169 -4.690 1.00 0.00 O ATOM 61 N GLU 27 -10.632 -5.767 -3.259 1.00 0.00 N ATOM 62 CA GLU 27 -11.928 -5.926 -2.603 1.00 0.00 C ATOM 63 C GLU 27 -12.264 -4.687 -1.780 1.00 0.00 C ATOM 64 O GLU 27 -13.383 -4.179 -1.838 1.00 0.00 O ATOM 65 N LEU 28 -11.279 -4.191 -1.037 1.00 0.00 N ATOM 66 CA LEU 28 -11.440 -2.979 -0.231 1.00 0.00 C ATOM 67 C LEU 28 -11.796 -1.802 -1.142 1.00 0.00 C ATOM 68 O LEU 28 -12.709 -1.025 -0.846 1.00 0.00 O ATOM 69 N ALA 29 -11.071 -1.689 -2.248 1.00 0.00 N ATOM 70 CA ALA 29 -11.264 -0.596 -3.206 1.00 0.00 C ATOM 71 C ALA 29 -12.699 -0.605 -3.740 1.00 0.00 C ATOM 72 O ALA 29 -13.377 0.422 -3.756 1.00 0.00 O ATOM 73 N ARG 30 -13.186 -1.773 -4.132 1.00 0.00 N ATOM 74 CA ARG 30 -14.565 -1.876 -4.641 1.00 0.00 C ATOM 75 C ARG 30 -15.595 -1.604 -3.549 1.00 0.00 C ATOM 76 O ARG 30 -16.571 -0.883 -3.765 1.00 0.00 O ATOM 77 N LYS 31 -15.375 -2.165 -2.368 1.00 0.00 N ATOM 78 CA LYS 31 -16.328 -2.055 -1.280 1.00 0.00 C ATOM 79 C LYS 31 -16.516 -0.614 -0.847 1.00 0.00 C ATOM 80 O LYS 31 -17.639 -0.196 -0.572 1.00 0.00 O ATOM 81 N VAL 32 -15.422 0.142 -0.802 1.00 0.00 N ATOM 82 CA VAL 32 -15.452 1.505 -0.273 1.00 0.00 C ATOM 83 C VAL 32 -15.515 2.568 -1.358 1.00 0.00 C ATOM 84 O VAL 32 -15.634 3.755 -1.038 1.00 0.00 O ATOM 85 N ASN 33 -15.461 2.151 -2.621 1.00 0.00 N ATOM 86 CA ASN 33 -15.407 3.077 -3.745 1.00 0.00 C ATOM 87 C ASN 33 -14.232 4.040 -3.583 1.00 0.00 C ATOM 88 O ASN 33 -14.387 5.264 -3.602 1.00 0.00 O ATOM 89 N LEU 34 -13.059 3.452 -3.379 1.00 0.00 N ATOM 90 CA LEU 34 -11.788 4.162 -3.378 1.00 0.00 C ATOM 91 C LEU 34 -10.878 3.553 -4.428 1.00 0.00 C ATOM 92 O LEU 34 -11.059 2.398 -4.818 1.00 0.00 O ATOM 93 N SER 35 -9.884 4.311 -4.878 1.00 0.00 N ATOM 94 CA SER 35 -8.943 3.792 -5.846 1.00 0.00 C ATOM 95 C SER 35 -8.003 2.807 -5.169 1.00 0.00 C ATOM 96 O SER 35 -7.710 2.929 -3.981 1.00 0.00 O ATOM 97 N VAL 36 -7.534 1.828 -5.923 1.00 0.00 N ATOM 98 CA VAL 36 -6.585 0.855 -5.388 1.00 0.00 C ATOM 99 C VAL 36 -5.322 1.541 -4.886 1.00 0.00 C ATOM 100 O VAL 36 -4.789 1.158 -3.863 1.00 0.00 O ATOM 101 N GLU 37 -4.840 2.553 -5.603 1.00 0.00 N ATOM 102 CA GLU 37 -3.638 3.274 -5.180 1.00 0.00 C ATOM 103 C GLU 37 -3.855 3.934 -3.826 1.00 0.00 C ATOM 104 O GLU 37 -2.986 3.873 -2.971 1.00 0.00 O ATOM 105 N SER 38 -4.996 4.578 -3.646 1.00 0.00 N ATOM 106 CA SER 38 -5.288 5.257 -2.393 1.00 0.00 C ATOM 107 C SER 38 -5.386 4.236 -1.257 1.00 0.00 C ATOM 108 O SER 38 -4.860 4.446 -0.163 1.00 0.00 O ATOM 109 N THR 39 -6.038 3.113 -1.529 1.00 0.00 N ATOM 110 CA THR 39 -6.126 2.043 -0.537 1.00 0.00 C ATOM 111 C THR 39 -4.740 1.515 -0.138 1.00 0.00 C ATOM 112 O THR 39 -4.456 1.338 1.051 1.00 0.00 O ATOM 113 N ALA 40 -3.883 1.254 -1.121 1.00 0.00 N ATOM 114 CA ALA 40 -2.514 0.820 -0.842 1.00 0.00 C ATOM 115 C ALA 40 -1.814 1.865 0.014 1.00 0.00 C ATOM 116 O ALA 40 -1.121 1.519 0.956 1.00 0.00 O ATOM 117 N LEU 41 -1.988 3.144 -0.322 1.00 0.00 N ATOM 118 CA LEU 41 -1.332 4.217 0.420 1.00 0.00 C ATOM 119 C LEU 41 -1.750 4.245 1.887 1.00 0.00 C ATOM 120 O LEU 41 -0.897 4.363 2.771 1.00 0.00 O ATOM 121 N ALA 42 -3.048 4.117 2.157 1.00 0.00 N ATOM 122 CA ALA 42 -3.529 4.112 3.538 1.00 0.00 C ATOM 123 C ALA 42 -3.147 2.823 4.260 1.00 0.00 C ATOM 124 O ALA 42 -2.831 2.847 5.451 1.00 0.00 O ATOM 125 N VAL 43 -3.163 1.702 3.557 1.00 0.00 N ATOM 126 CA VAL 43 -2.711 0.456 4.166 1.00 0.00 C ATOM 127 C VAL 43 -1.270 0.527 4.653 1.00 0.00 C ATOM 128 O VAL 43 -0.966 0.003 5.717 1.00 0.00 O ATOM 129 N GLY 44 -0.381 1.180 3.903 1.00 0.00 N ATOM 130 CA GLY 44 1.002 1.313 4.345 1.00 0.00 C ATOM 131 C GLY 44 1.046 1.993 5.710 1.00 0.00 C ATOM 132 O GLY 44 1.771 1.578 6.595 1.00 0.00 O ATOM 133 N TRP 45 0.277 3.063 5.852 1.00 0.00 N ATOM 134 CA TRP 45 0.208 3.801 7.106 1.00 0.00 C ATOM 135 C TRP 45 -0.365 2.932 8.224 1.00 0.00 C ATOM 136 O TRP 45 0.170 2.898 9.321 1.00 0.00 O ATOM 137 N LEU 46 -1.459 2.237 7.948 1.00 0.00 N ATOM 138 CA LEU 46 -2.117 1.443 8.976 1.00 0.00 C ATOM 139 C LEU 46 -1.257 0.260 9.405 1.00 0.00 C ATOM 140 O LEU 46 -1.274 -0.128 10.569 1.00 0.00 O ATOM 141 N ALA 47 -0.477 -0.285 8.472 1.00 0.00 N ATOM 142 CA ALA 47 0.471 -1.355 8.774 1.00 0.00 C ATOM 143 C ALA 47 1.575 -0.846 9.701 1.00 0.00 C ATOM 144 O ALA 47 1.874 -1.454 10.730 1.00 0.00 O ATOM 145 N ARG 48 2.175 0.285 9.345 1.00 0.00 N ATOM 146 CA ARG 48 3.277 0.820 10.146 1.00 0.00 C ATOM 147 C ARG 48 2.826 1.237 11.537 1.00 0.00 C ATOM 148 O ARG 48 3.585 1.104 12.500 1.00 0.00 O ATOM 149 N GLU 49 1.587 1.702 11.648 1.00 0.00 N ATOM 150 CA GLU 49 1.021 2.124 12.934 1.00 0.00 C ATOM 151 C GLU 49 0.584 0.942 13.803 1.00 0.00 C ATOM 152 O GLU 49 0.238 1.132 14.970 1.00 0.00 O ATOM 153 N ASN 50 0.556 -0.265 13.239 1.00 0.00 N ATOM 154 CA ASN 50 0.224 -1.454 14.009 1.00 0.00 C ATOM 155 C ASN 50 -1.272 -1.695 14.129 1.00 0.00 C ATOM 156 O ASN 50 -1.708 -2.388 15.048 1.00 0.00 O ATOM 157 N LYS 51 -2.062 -1.114 13.226 1.00 0.00 N ATOM 158 CA LYS 51 -3.528 -1.240 13.282 1.00 0.00 C ATOM 159 C LYS 51 -4.093 -2.285 12.322 1.00 0.00 C ATOM 160 O LYS 51 -5.232 -2.739 12.492 1.00 0.00 O ATOM 161 N VAL 52 -3.313 -2.615 11.298 1.00 0.00 N ATOM 162 CA VAL 52 -3.669 -3.599 10.283 1.00 0.00 C ATOM 163 C VAL 52 -2.450 -4.487 10.103 1.00 0.00 C ATOM 164 O VAL 52 -1.321 -4.048 10.292 1.00 0.00 O ATOM 165 N VAL 53 -2.691 -5.751 9.785 1.00 0.00 N ATOM 166 CA VAL 53 -1.636 -6.713 9.483 1.00 0.00 C ATOM 167 C VAL 53 -1.880 -7.286 8.102 1.00 0.00 C ATOM 168 O VAL 53 -2.970 -7.171 7.557 1.00 0.00 O ATOM 169 N ILE 54 -0.862 -7.905 7.523 1.00 0.00 N ATOM 170 CA ILE 54 -1.068 -8.617 6.267 1.00 0.00 C ATOM 171 C ILE 54 -0.870 -10.104 6.460 1.00 0.00 C ATOM 172 O ILE 54 -0.187 -10.533 7.387 1.00 0.00 O ATOM 173 N GLU 55 -1.481 -10.883 5.577 1.00 0.00 N ATOM 174 CA GLU 55 -1.242 -12.318 5.569 1.00 0.00 C ATOM 175 C GLU 55 -1.385 -12.906 4.181 1.00 0.00 C ATOM 176 O GLU 55 -2.197 -12.478 3.361 1.00 0.00 O ATOM 177 N ARG 56 -0.558 -13.914 3.941 1.00 0.00 N ATOM 178 CA ARG 56 -0.521 -14.608 2.675 1.00 0.00 C ATOM 179 C ARG 56 -1.793 -15.417 2.454 1.00 0.00 C ATOM 180 O ARG 56 -2.368 -15.994 3.382 1.00 0.00 O ATOM 181 N LYS 57 -2.215 -15.421 1.198 1.00 0.00 N ATOM 182 CA LYS 57 -3.252 -16.285 0.689 1.00 0.00 C ATOM 183 C LYS 57 -2.639 -17.114 -0.428 1.00 0.00 C ATOM 184 O LYS 57 -1.979 -16.586 -1.320 1.00 0.00 O ATOM 185 N ASN 58 -2.840 -18.423 -0.353 1.00 0.00 N ATOM 186 CA ASN 58 -2.516 -19.325 -1.450 1.00 0.00 C ATOM 187 C ASN 58 -3.754 -20.153 -1.759 1.00 0.00 C ATOM 188 O ASN 58 -3.980 -21.212 -1.168 1.00 0.00 O ATOM 189 N GLY 59 -4.581 -19.639 -2.661 1.00 0.00 N ATOM 190 CA GLY 59 -5.882 -20.240 -2.957 1.00 0.00 C ATOM 191 C GLY 59 -6.181 -20.077 -4.445 1.00 0.00 C ATOM 192 O GLY 59 -7.185 -19.498 -4.854 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 192 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 40.15 87.2 94 74.6 126 ARMSMC SECONDARY STRUCTURE . . 12.73 97.0 67 69.8 96 ARMSMC SURFACE . . . . . . . . 46.82 82.4 68 75.6 90 ARMSMC BURIED . . . . . . . . 9.74 100.0 26 72.2 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 38 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 27 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.51 (Number of atoms: 48) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.51 48 75.0 64 CRMSCA CRN = ALL/NP . . . . . 0.0316 CRMSCA SECONDARY STRUCTURE . . 1.15 34 70.8 48 CRMSCA SURFACE . . . . . . . . 1.68 35 76.1 46 CRMSCA BURIED . . . . . . . . 0.93 13 72.2 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.58 192 61.0 315 CRMSMC SECONDARY STRUCTURE . . 1.15 136 57.4 237 CRMSMC SURFACE . . . . . . . . 1.75 140 62.2 225 CRMSMC BURIED . . . . . . . . 0.96 52 57.8 90 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 752 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 710 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 580 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 543 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 209 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.58 192 19.0 1008 CRMSALL SECONDARY STRUCTURE . . 1.15 136 17.6 772 CRMSALL SURFACE . . . . . . . . 1.75 140 19.3 727 CRMSALL BURIED . . . . . . . . 0.96 52 18.5 281 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.191 1.000 0.500 48 75.0 64 ERRCA SECONDARY STRUCTURE . . 1.082 1.000 0.500 34 70.8 48 ERRCA SURFACE . . . . . . . . 1.300 1.000 0.500 35 76.1 46 ERRCA BURIED . . . . . . . . 0.897 1.000 0.500 13 72.2 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.200 1.000 0.500 192 61.0 315 ERRMC SECONDARY STRUCTURE . . 1.070 1.000 0.500 136 57.4 237 ERRMC SURFACE . . . . . . . . 1.304 1.000 0.500 140 62.2 225 ERRMC BURIED . . . . . . . . 0.922 1.000 0.500 52 57.8 90 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 752 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 710 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 580 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 543 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 209 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.200 1.000 0.500 192 19.0 1008 ERRALL SECONDARY STRUCTURE . . 1.070 1.000 0.500 136 17.6 772 ERRALL SURFACE . . . . . . . . 1.304 1.000 0.500 140 19.3 727 ERRALL BURIED . . . . . . . . 0.922 1.000 0.500 52 18.5 281 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 23 47 47 47 48 48 64 DISTCA CA (P) 35.94 73.44 73.44 73.44 75.00 64 DISTCA CA (RMS) 0.77 1.14 1.14 1.14 1.51 DISTCA ALL (N) 97 181 185 189 192 192 1008 DISTALL ALL (P) 9.62 17.96 18.35 18.75 19.05 1008 DISTALL ALL (RMS) 0.76 1.08 1.12 1.25 1.58 DISTALL END of the results output