####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 307), selected 40 , name T0559TS471_1-D1 # Molecule2: number of CA atoms 67 ( 1078), selected 40 , name T0559-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0559TS471_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 4 - 31 4.78 9.68 LCS_AVERAGE: 37.50 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 5 - 19 1.92 17.31 LONGEST_CONTINUOUS_SEGMENT: 15 6 - 20 1.72 18.31 LONGEST_CONTINUOUS_SEGMENT: 15 9 - 23 1.98 19.07 LCS_AVERAGE: 16.49 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 8 - 19 0.85 18.24 LCS_AVERAGE: 11.72 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 3 M 3 3 3 27 0 3 3 3 3 4 5 5 9 10 13 17 17 18 18 18 23 24 26 30 LCS_GDT L 4 L 4 6 13 28 4 6 6 9 9 12 13 16 16 19 22 22 26 27 28 29 30 34 35 36 LCS_GDT K 5 K 5 6 15 28 4 6 6 9 11 13 15 16 17 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT E 6 E 6 6 15 28 4 6 8 11 14 15 15 16 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT K 7 K 7 6 15 28 4 6 6 10 14 15 15 16 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT A 8 A 8 12 15 28 4 6 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT G 9 G 9 12 15 28 4 9 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT A 10 A 10 12 15 28 4 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT L 11 L 11 12 15 28 3 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT A 12 A 12 12 15 28 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT G 13 G 13 12 15 28 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT Q 14 Q 14 12 15 28 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 31 35 36 LCS_GDT I 15 I 15 12 15 28 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT W 16 W 16 12 15 28 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT E 17 E 17 12 15 28 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT A 18 A 18 12 15 28 7 10 12 12 14 15 16 16 20 21 22 23 25 27 28 28 30 31 32 36 LCS_GDT L 19 L 19 12 15 28 6 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT N 20 N 20 3 15 28 3 3 3 7 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT G 21 G 21 3 15 28 3 3 4 9 12 14 16 16 17 19 20 23 26 27 28 29 30 34 35 36 LCS_GDT T 22 T 22 3 15 28 3 5 6 7 10 14 16 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT E 23 E 23 3 15 28 3 3 3 7 10 14 16 16 17 19 20 23 24 27 28 29 30 34 35 36 LCS_GDT G 24 G 24 3 4 28 3 3 3 4 7 10 15 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT L 25 L 25 3 4 28 1 3 4 6 8 9 15 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT T 26 T 26 10 10 28 4 8 10 10 10 10 15 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT Q 27 Q 27 10 10 28 7 9 10 10 10 10 15 17 20 21 22 23 26 27 28 29 30 34 35 36 LCS_GDT K 28 K 28 10 10 28 7 9 10 10 10 10 10 13 14 17 20 22 26 27 28 29 30 34 35 36 LCS_GDT Q 29 Q 29 10 10 28 7 9 10 10 10 10 11 13 14 17 20 22 26 27 28 29 30 34 35 36 LCS_GDT I 30 I 30 10 10 28 7 9 10 10 10 10 10 11 11 14 19 22 26 27 28 29 30 34 35 36 LCS_GDT K 31 K 31 10 10 28 7 9 10 10 10 10 11 13 14 17 20 22 26 27 28 29 30 34 35 36 LCS_GDT K 32 K 32 10 10 26 7 9 10 10 10 10 10 11 11 16 19 20 22 24 27 29 30 34 35 36 LCS_GDT A 33 A 33 10 10 18 7 9 10 10 10 10 10 11 11 13 15 16 20 22 25 27 29 34 35 36 LCS_GDT T 34 T 34 10 10 18 4 9 10 10 10 10 10 11 11 13 15 16 20 22 25 27 29 34 35 36 LCS_GDT K 35 K 35 10 10 18 4 9 10 10 10 10 10 11 11 13 15 16 18 22 25 25 27 34 35 36 LCS_GDT L 36 L 36 3 4 18 3 3 4 4 5 6 7 10 11 13 15 16 20 22 25 27 29 34 35 36 LCS_GDT K 37 K 37 3 4 18 3 3 4 4 5 6 8 10 11 14 18 20 22 24 26 29 30 34 35 36 LCS_GDT A 38 A 38 3 5 18 3 3 4 4 5 6 7 10 11 14 19 20 22 24 27 29 30 34 35 36 LCS_GDT D 39 D 39 4 5 18 3 4 4 4 5 6 6 7 11 12 13 16 18 24 25 27 29 34 35 36 LCS_GDT K 40 K 40 4 5 14 3 4 4 4 5 6 7 7 9 10 12 15 17 18 22 23 26 30 31 34 LCS_GDT D 41 D 41 4 5 14 3 4 4 4 5 5 7 7 9 10 11 15 15 16 19 20 21 23 24 25 LCS_GDT F 42 F 42 4 5 14 3 4 4 4 5 6 7 7 9 10 10 15 15 16 19 20 21 23 23 25 LCS_AVERAGE LCS_A: 21.90 ( 11.72 16.49 37.50 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 12 12 14 15 16 17 20 21 22 23 26 27 28 29 30 34 35 36 GDT PERCENT_AT 10.45 14.93 17.91 17.91 20.90 22.39 23.88 25.37 29.85 31.34 32.84 34.33 38.81 40.30 41.79 43.28 44.78 50.75 52.24 53.73 GDT RMS_LOCAL 0.31 0.51 0.85 0.85 1.52 1.72 2.14 2.82 3.14 3.32 3.47 3.71 4.57 4.65 4.78 5.32 5.43 6.22 6.36 6.50 GDT RMS_ALL_AT 19.09 19.09 18.24 18.24 17.94 18.31 18.41 12.83 12.50 12.44 12.21 12.77 9.56 9.72 9.68 8.46 8.56 7.93 7.94 7.95 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 3 M 3 12.562 0 0.184 0.751 14.754 0.000 0.000 LGA L 4 L 4 8.558 0 0.717 0.997 10.767 8.929 6.488 LGA K 5 K 5 7.457 0 0.053 0.574 12.355 14.524 7.090 LGA E 6 E 6 6.534 0 0.046 0.769 8.692 19.881 12.751 LGA K 7 K 7 4.789 0 0.045 0.665 5.758 40.000 39.259 LGA A 8 A 8 1.977 0 0.143 0.137 3.900 69.048 63.905 LGA G 9 G 9 2.198 0 0.363 0.363 2.378 66.786 66.786 LGA A 10 A 10 2.372 0 0.051 0.057 3.314 68.810 65.048 LGA L 11 L 11 2.381 0 0.054 0.121 4.668 67.024 56.250 LGA A 12 A 12 2.569 0 0.044 0.055 3.586 66.905 62.190 LGA G 13 G 13 1.481 0 0.093 0.093 1.481 83.690 83.690 LGA Q 14 Q 14 2.933 0 0.082 0.745 7.499 57.619 36.508 LGA I 15 I 15 3.491 0 0.047 0.119 5.620 53.571 41.310 LGA W 16 W 16 1.654 0 0.045 1.604 10.594 81.667 39.728 LGA E 17 E 17 2.641 0 0.107 1.064 4.967 61.429 54.074 LGA A 18 A 18 4.304 0 0.054 0.053 5.442 41.905 38.762 LGA L 19 L 19 3.239 0 0.678 0.619 6.654 57.262 42.917 LGA N 20 N 20 3.601 0 0.146 1.040 7.118 43.810 29.107 LGA G 21 G 21 6.013 0 0.184 0.184 7.468 21.429 21.429 LGA T 22 T 22 3.627 0 0.577 1.273 6.394 33.810 43.605 LGA E 23 E 23 6.832 0 0.235 0.663 14.143 17.976 8.360 LGA G 24 G 24 3.924 0 0.613 0.613 5.064 39.167 39.167 LGA L 25 L 25 3.010 0 0.588 1.282 8.863 65.238 39.821 LGA T 26 T 26 1.891 0 0.593 1.027 3.863 63.452 63.333 LGA Q 27 Q 27 3.289 0 0.069 0.774 8.063 35.476 25.291 LGA K 28 K 28 10.177 0 0.068 1.130 17.703 1.786 0.794 LGA Q 29 Q 29 10.998 0 0.077 0.965 13.717 0.119 1.323 LGA I 30 I 30 10.248 0 0.090 1.225 13.548 0.357 5.179 LGA K 31 K 31 12.020 0 0.080 0.916 16.666 0.000 0.000 LGA K 32 K 32 18.292 0 0.081 0.903 25.220 0.000 0.000 LGA A 33 A 33 20.475 0 0.121 0.115 23.550 0.000 0.000 LGA T 34 T 34 19.859 0 0.155 1.030 22.812 0.000 0.000 LGA K 35 K 35 23.164 0 0.270 0.778 25.406 0.000 0.000 LGA L 36 L 36 23.014 0 0.595 1.488 24.492 0.000 0.000 LGA K 37 K 37 24.080 0 0.078 1.014 30.905 0.000 0.000 LGA A 38 A 38 21.678 0 0.587 0.575 22.748 0.000 0.000 LGA D 39 D 39 21.015 0 0.466 1.220 22.186 0.000 0.000 LGA K 40 K 40 21.598 0 0.070 0.969 23.363 0.000 0.000 LGA D 41 D 41 27.196 0 0.102 1.325 33.242 0.000 0.000 LGA F 42 F 42 24.649 0 0.126 1.220 25.289 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 306 306 100.00 67 SUMMARY(RMSD_GDC): 7.759 7.798 9.052 17.637 14.838 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 67 4.0 17 2.82 25.373 23.847 0.583 LGA_LOCAL RMSD: 2.816 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.828 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.759 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.684917 * X + -0.408672 * Y + 0.603221 * Z + -9.941553 Y_new = -0.725615 * X + 0.307446 * Y + -0.615598 * Z + -14.860843 Z_new = 0.066120 * X + -0.859340 * Y + -0.507113 * Z + 7.682580 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.327350 -0.066168 -2.103919 [DEG: -133.3473 -3.7911 -120.5457 ] ZXZ: 0.775244 2.102628 3.064802 [DEG: 44.4182 120.4717 175.6002 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0559TS471_1-D1 REMARK 2: T0559-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0559TS471_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 67 4.0 17 2.82 23.847 7.76 REMARK ---------------------------------------------------------- MOLECULE T0559TS471_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0559 REMARK MODEL 1 REMARK PARENT 1j3x_A ATOM 10 N MET 3 -1.655 2.838 3.112 1.00 0.00 N ATOM 11 CA MET 3 -1.166 3.600 2.008 1.00 0.00 C ATOM 12 CB MET 3 -0.585 4.960 2.420 1.00 0.00 C ATOM 13 CG MET 3 -0.470 5.935 1.247 1.00 0.00 C ATOM 14 SD MET 3 -2.068 6.507 0.587 1.00 0.00 S ATOM 15 CE MET 3 -1.358 7.777 -0.497 1.00 0.00 C ATOM 16 C MET 3 -0.094 2.818 1.331 1.00 0.00 C ATOM 17 O MET 3 0.104 1.634 1.600 1.00 0.00 O ATOM 18 N LEU 4 0.626 3.479 0.409 1.00 0.00 N ATOM 19 CA LEU 4 1.682 2.839 -0.304 1.00 0.00 C ATOM 20 CB LEU 4 2.268 3.716 -1.419 1.00 0.00 C ATOM 21 CG LEU 4 1.241 4.089 -2.508 1.00 0.00 C ATOM 22 CD1 LEU 4 1.888 4.917 -3.627 1.00 0.00 C ATOM 23 CD2 LEU 4 0.498 2.855 -3.042 1.00 0.00 C ATOM 24 C LEU 4 2.745 2.551 0.696 1.00 0.00 C ATOM 25 O LEU 4 2.775 3.140 1.775 1.00 0.00 O ATOM 26 N LYS 5 3.651 1.624 0.359 1.00 0.00 N ATOM 27 CA LYS 5 4.603 1.200 1.331 1.00 0.00 C ATOM 28 CB LYS 5 5.571 0.132 0.797 1.00 0.00 C ATOM 29 CG LYS 5 6.327 -0.600 1.907 1.00 0.00 C ATOM 30 CD LYS 5 6.979 -1.909 1.452 1.00 0.00 C ATOM 31 CE LYS 5 7.698 -2.658 2.576 1.00 0.00 C ATOM 32 NZ LYS 5 8.512 -3.753 2.008 1.00 0.00 N ATOM 33 C LYS 5 5.412 2.361 1.813 1.00 0.00 C ATOM 34 O LYS 5 5.638 2.490 3.012 1.00 0.00 O ATOM 35 N GLU 6 5.881 3.244 0.919 1.00 0.00 N ATOM 36 CA GLU 6 6.711 4.299 1.419 1.00 0.00 C ATOM 37 CB GLU 6 7.443 5.101 0.337 1.00 0.00 C ATOM 38 CG GLU 6 8.500 6.039 0.923 1.00 0.00 C ATOM 39 CD GLU 6 9.179 6.764 -0.224 1.00 0.00 C ATOM 40 OE1 GLU 6 9.887 6.087 -1.017 1.00 0.00 O ATOM 41 OE2 GLU 6 9.005 8.010 -0.316 1.00 0.00 O ATOM 42 C GLU 6 5.914 5.261 2.235 1.00 0.00 C ATOM 43 O GLU 6 6.397 5.737 3.263 1.00 0.00 O ATOM 44 N LYS 7 4.665 5.561 1.817 1.00 0.00 N ATOM 45 CA LYS 7 3.936 6.573 2.522 1.00 0.00 C ATOM 46 CB LYS 7 2.526 6.850 1.973 1.00 0.00 C ATOM 47 CG LYS 7 1.786 7.853 2.862 1.00 0.00 C ATOM 48 CD LYS 7 0.585 8.520 2.193 1.00 0.00 C ATOM 49 CE LYS 7 -0.243 9.391 3.138 1.00 0.00 C ATOM 50 NZ LYS 7 -1.197 10.202 2.347 1.00 0.00 N ATOM 51 C LYS 7 3.788 6.199 3.956 1.00 0.00 C ATOM 52 O LYS 7 4.170 6.976 4.829 1.00 0.00 O ATOM 53 N ALA 8 3.245 5.007 4.264 1.00 0.00 N ATOM 54 CA ALA 8 3.193 4.676 5.658 1.00 0.00 C ATOM 55 CB ALA 8 2.530 3.317 5.925 1.00 0.00 C ATOM 56 C ALA 8 4.621 4.572 6.064 1.00 0.00 C ATOM 57 O ALA 8 5.055 5.103 7.087 1.00 0.00 O ATOM 58 N GLY 9 5.372 3.848 5.219 1.00 0.00 N ATOM 59 CA GLY 9 6.793 3.694 5.238 1.00 0.00 C ATOM 60 C GLY 9 7.302 3.559 6.620 1.00 0.00 C ATOM 61 O GLY 9 7.143 2.540 7.289 1.00 0.00 O ATOM 62 N ALA 10 7.961 4.639 7.053 1.00 0.00 N ATOM 63 CA ALA 10 8.653 4.706 8.296 1.00 0.00 C ATOM 64 CB ALA 10 9.331 6.065 8.503 1.00 0.00 C ATOM 65 C ALA 10 7.703 4.508 9.427 1.00 0.00 C ATOM 66 O ALA 10 8.037 3.847 10.407 1.00 0.00 O ATOM 67 N LEU 11 6.489 5.073 9.328 1.00 0.00 N ATOM 68 CA LEU 11 5.586 5.009 10.437 1.00 0.00 C ATOM 69 CB LEU 11 4.257 5.706 10.107 1.00 0.00 C ATOM 70 CG LEU 11 4.424 7.158 9.619 1.00 0.00 C ATOM 71 CD1 LEU 11 3.065 7.800 9.308 1.00 0.00 C ATOM 72 CD2 LEU 11 5.264 7.993 10.597 1.00 0.00 C ATOM 73 C LEU 11 5.274 3.573 10.729 1.00 0.00 C ATOM 74 O LEU 11 5.326 3.120 11.873 1.00 0.00 O ATOM 75 N ALA 12 4.956 2.816 9.666 1.00 0.00 N ATOM 76 CA ALA 12 4.579 1.435 9.760 1.00 0.00 C ATOM 77 CB ALA 12 4.139 0.838 8.411 1.00 0.00 C ATOM 78 C ALA 12 5.726 0.612 10.250 1.00 0.00 C ATOM 79 O ALA 12 5.542 -0.332 11.013 1.00 0.00 O ATOM 80 N GLY 13 6.951 0.960 9.820 1.00 0.00 N ATOM 81 CA GLY 13 8.098 0.158 10.123 1.00 0.00 C ATOM 82 C GLY 13 8.273 0.040 11.601 1.00 0.00 C ATOM 83 O GLY 13 8.628 -1.028 12.096 1.00 0.00 O ATOM 84 N GLN 14 8.059 1.123 12.365 1.00 0.00 N ATOM 85 CA GLN 14 8.320 0.931 13.757 1.00 0.00 C ATOM 86 CB GLN 14 8.227 2.197 14.615 1.00 0.00 C ATOM 87 CG GLN 14 8.528 1.854 16.072 1.00 0.00 C ATOM 88 CD GLN 14 8.835 3.122 16.856 1.00 0.00 C ATOM 89 OE1 GLN 14 8.037 4.057 16.924 1.00 0.00 O ATOM 90 NE2 GLN 14 10.045 3.154 17.478 1.00 0.00 N ATOM 91 C GLN 14 7.358 -0.069 14.323 1.00 0.00 C ATOM 92 O GLN 14 7.753 -0.958 15.076 1.00 0.00 O ATOM 93 N ILE 15 6.066 0.040 13.955 1.00 0.00 N ATOM 94 CA ILE 15 5.057 -0.838 14.485 1.00 0.00 C ATOM 95 CB ILE 15 3.663 -0.472 14.047 1.00 0.00 C ATOM 96 CG2 ILE 15 2.709 -1.584 14.515 1.00 0.00 C ATOM 97 CG1 ILE 15 3.270 0.927 14.556 1.00 0.00 C ATOM 98 CD1 ILE 15 1.980 1.459 13.930 1.00 0.00 C ATOM 99 C ILE 15 5.298 -2.228 13.997 1.00 0.00 C ATOM 100 O ILE 15 5.254 -3.190 14.761 1.00 0.00 O ATOM 101 N TRP 16 5.582 -2.351 12.691 1.00 0.00 N ATOM 102 CA TRP 16 5.713 -3.621 12.052 1.00 0.00 C ATOM 103 CB TRP 16 5.940 -3.467 10.539 1.00 0.00 C ATOM 104 CG TRP 16 5.960 -4.770 9.792 1.00 0.00 C ATOM 105 CD2 TRP 16 4.806 -5.610 9.657 1.00 0.00 C ATOM 106 CD1 TRP 16 6.988 -5.423 9.177 1.00 0.00 C ATOM 107 NE1 TRP 16 6.536 -6.604 8.640 1.00 0.00 N ATOM 108 CE2 TRP 16 5.196 -6.737 8.941 1.00 0.00 C ATOM 109 CE3 TRP 16 3.526 -5.455 10.106 1.00 0.00 C ATOM 110 CZ2 TRP 16 4.304 -7.730 8.660 1.00 0.00 C ATOM 111 CZ3 TRP 16 2.626 -6.456 9.818 1.00 0.00 C ATOM 112 CH2 TRP 16 3.010 -7.574 9.108 1.00 0.00 C ATOM 113 C TRP 16 6.855 -4.374 12.647 1.00 0.00 C ATOM 114 O TRP 16 6.733 -5.563 12.937 1.00 0.00 O ATOM 115 N GLU 17 7.999 -3.700 12.849 1.00 0.00 N ATOM 116 CA GLU 17 9.134 -4.382 13.392 1.00 0.00 C ATOM 117 CB GLU 17 10.391 -3.494 13.438 1.00 0.00 C ATOM 118 CG GLU 17 10.206 -2.158 14.162 1.00 0.00 C ATOM 119 CD GLU 17 11.453 -1.328 13.882 1.00 0.00 C ATOM 120 OE1 GLU 17 12.273 -1.777 13.039 1.00 0.00 O ATOM 121 OE2 GLU 17 11.603 -0.240 14.497 1.00 0.00 O ATOM 122 C GLU 17 8.803 -4.841 14.775 1.00 0.00 C ATOM 123 O GLU 17 9.147 -5.957 15.157 1.00 0.00 O ATOM 124 N ALA 18 8.114 -3.986 15.554 1.00 0.00 N ATOM 125 CA ALA 18 7.769 -4.273 16.919 1.00 0.00 C ATOM 126 CB ALA 18 7.087 -3.086 17.624 1.00 0.00 C ATOM 127 C ALA 18 6.817 -5.425 16.999 1.00 0.00 C ATOM 128 O ALA 18 6.949 -6.287 17.867 1.00 0.00 O ATOM 129 N LEU 19 5.843 -5.482 16.074 1.00 0.00 N ATOM 130 CA LEU 19 4.778 -6.439 16.141 1.00 0.00 C ATOM 131 CB LEU 19 3.709 -6.230 15.056 1.00 0.00 C ATOM 132 CG LEU 19 3.067 -4.832 15.122 1.00 0.00 C ATOM 133 CD1 LEU 19 1.898 -4.710 14.135 1.00 0.00 C ATOM 134 CD2 LEU 19 2.688 -4.459 16.568 1.00 0.00 C ATOM 135 C LEU 19 5.310 -7.830 16.024 1.00 0.00 C ATOM 136 O LEU 19 6.363 -8.075 15.438 1.00 0.00 O ATOM 137 N ASN 20 4.582 -8.776 16.655 1.00 0.00 N ATOM 138 CA ASN 20 4.926 -10.166 16.659 1.00 0.00 C ATOM 139 CB ASN 20 4.307 -10.941 17.837 1.00 0.00 C ATOM 140 CG ASN 20 4.932 -10.450 19.132 1.00 0.00 C ATOM 141 OD1 ASN 20 6.151 -10.318 19.231 1.00 0.00 O ATOM 142 ND2 ASN 20 4.072 -10.152 20.142 1.00 0.00 N ATOM 143 C ASN 20 4.380 -10.789 15.408 1.00 0.00 C ATOM 144 O ASN 20 3.496 -10.236 14.754 1.00 0.00 O ATOM 145 N GLY 21 4.928 -11.969 15.044 1.00 0.00 N ATOM 146 CA GLY 21 4.502 -12.724 13.898 1.00 0.00 C ATOM 147 C GLY 21 3.102 -13.176 14.143 1.00 0.00 C ATOM 148 O GLY 21 2.289 -13.261 13.224 1.00 0.00 O ATOM 149 N THR 22 2.798 -13.498 15.410 1.00 0.00 N ATOM 150 CA THR 22 1.497 -13.973 15.762 1.00 0.00 C ATOM 151 CB THR 22 1.369 -14.230 17.232 1.00 0.00 C ATOM 152 OG1 THR 22 1.557 -13.021 17.954 1.00 0.00 O ATOM 153 CG2 THR 22 2.429 -15.263 17.647 1.00 0.00 C ATOM 154 C THR 22 0.501 -12.913 15.415 1.00 0.00 C ATOM 155 O THR 22 -0.559 -13.214 14.869 1.00 0.00 O ATOM 156 N GLU 23 0.791 -11.646 15.770 1.00 0.00 N ATOM 157 CA GLU 23 -0.111 -10.571 15.468 1.00 0.00 C ATOM 158 CB GLU 23 0.245 -9.269 16.196 1.00 0.00 C ATOM 159 CG GLU 23 -0.824 -8.187 16.033 1.00 0.00 C ATOM 160 CD GLU 23 -0.441 -6.994 16.896 1.00 0.00 C ATOM 161 OE1 GLU 23 0.732 -6.941 17.355 1.00 0.00 O ATOM 162 OE2 GLU 23 -1.321 -6.118 17.109 1.00 0.00 O ATOM 163 C GLU 23 -0.104 -10.276 14.001 1.00 0.00 C ATOM 164 O GLU 23 -1.154 -10.096 13.390 1.00 0.00 O ATOM 165 N GLY 24 1.095 -10.243 13.391 1.00 0.00 N ATOM 166 CA GLY 24 1.259 -9.880 12.009 1.00 0.00 C ATOM 167 C GLY 24 0.547 -10.870 11.145 1.00 0.00 C ATOM 168 O GLY 24 0.042 -10.537 10.074 1.00 0.00 O ATOM 169 N LEU 25 0.489 -12.124 11.610 1.00 0.00 N ATOM 170 CA LEU 25 -0.030 -13.216 10.843 1.00 0.00 C ATOM 171 CB LEU 25 -0.060 -14.491 11.710 1.00 0.00 C ATOM 172 CG LEU 25 -0.331 -15.834 10.997 1.00 0.00 C ATOM 173 CD1 LEU 25 -0.416 -16.973 12.025 1.00 0.00 C ATOM 174 CD2 LEU 25 -1.551 -15.804 10.061 1.00 0.00 C ATOM 175 C LEU 25 -1.433 -12.887 10.433 1.00 0.00 C ATOM 176 O LEU 25 -1.813 -13.087 9.279 1.00 0.00 O ATOM 177 N THR 26 -2.239 -12.341 11.361 1.00 0.00 N ATOM 178 CA THR 26 -3.613 -12.061 11.056 1.00 0.00 C ATOM 179 CB THR 26 -4.386 -11.591 12.252 1.00 0.00 C ATOM 180 OG1 THR 26 -5.765 -11.470 11.933 1.00 0.00 O ATOM 181 CG2 THR 26 -3.815 -10.237 12.699 1.00 0.00 C ATOM 182 C THR 26 -3.714 -11.024 9.976 1.00 0.00 C ATOM 183 O THR 26 -4.548 -11.151 9.082 1.00 0.00 O ATOM 184 N GLN 27 -2.880 -9.965 10.033 1.00 0.00 N ATOM 185 CA GLN 27 -2.912 -8.917 9.046 1.00 0.00 C ATOM 186 CB GLN 27 -1.969 -7.736 9.337 1.00 0.00 C ATOM 187 CG GLN 27 -2.361 -6.866 10.534 1.00 0.00 C ATOM 188 CD GLN 27 -1.496 -5.616 10.474 1.00 0.00 C ATOM 189 OE1 GLN 27 -0.952 -5.166 11.480 1.00 0.00 O ATOM 190 NE2 GLN 27 -1.385 -5.019 9.257 1.00 0.00 N ATOM 191 C GLN 27 -2.467 -9.473 7.734 1.00 0.00 C ATOM 192 O GLN 27 -2.962 -9.080 6.680 1.00 0.00 O ATOM 193 N LYS 28 -1.515 -10.418 7.775 1.00 0.00 N ATOM 194 CA LYS 28 -0.916 -10.992 6.607 1.00 0.00 C ATOM 195 CB LYS 28 -0.011 -12.171 6.999 1.00 0.00 C ATOM 196 CG LYS 28 0.687 -12.918 5.862 1.00 0.00 C ATOM 197 CD LYS 28 1.597 -14.024 6.407 1.00 0.00 C ATOM 198 CE LYS 28 2.005 -15.081 5.379 1.00 0.00 C ATOM 199 NZ LYS 28 3.197 -14.626 4.632 1.00 0.00 N ATOM 200 C LYS 28 -1.982 -11.549 5.725 1.00 0.00 C ATOM 201 O LYS 28 -1.974 -11.311 4.519 1.00 0.00 O ATOM 202 N GLN 29 -2.941 -12.296 6.301 1.00 0.00 N ATOM 203 CA GLN 29 -3.955 -12.935 5.512 1.00 0.00 C ATOM 204 CB GLN 29 -4.876 -13.840 6.344 1.00 0.00 C ATOM 205 CG GLN 29 -4.174 -15.088 6.878 1.00 0.00 C ATOM 206 CD GLN 29 -5.202 -15.877 7.676 1.00 0.00 C ATOM 207 OE1 GLN 29 -4.904 -16.937 8.226 1.00 0.00 O ATOM 208 NE2 GLN 29 -6.451 -15.342 7.752 1.00 0.00 N ATOM 209 C GLN 29 -4.829 -11.930 4.827 1.00 0.00 C ATOM 210 O GLN 29 -5.166 -12.093 3.656 1.00 0.00 O ATOM 211 N ILE 30 -5.234 -10.865 5.542 1.00 0.00 N ATOM 212 CA ILE 30 -6.126 -9.892 4.971 1.00 0.00 C ATOM 213 CB ILE 30 -6.663 -8.895 5.959 1.00 0.00 C ATOM 214 CG2 ILE 30 -7.481 -9.659 7.012 1.00 0.00 C ATOM 215 CG1 ILE 30 -5.533 -8.047 6.560 1.00 0.00 C ATOM 216 CD1 ILE 30 -6.049 -6.845 7.348 1.00 0.00 C ATOM 217 C ILE 30 -5.450 -9.153 3.856 1.00 0.00 C ATOM 218 O ILE 30 -6.075 -8.850 2.840 1.00 0.00 O ATOM 219 N LYS 31 -4.159 -8.813 4.024 1.00 0.00 N ATOM 220 CA LYS 31 -3.455 -8.079 3.011 1.00 0.00 C ATOM 221 CB LYS 31 -2.011 -7.702 3.391 1.00 0.00 C ATOM 222 CG LYS 31 -1.335 -6.864 2.299 1.00 0.00 C ATOM 223 CD LYS 31 -0.014 -6.207 2.704 1.00 0.00 C ATOM 224 CE LYS 31 0.617 -5.396 1.569 1.00 0.00 C ATOM 225 NZ LYS 31 1.973 -4.942 1.954 1.00 0.00 N ATOM 226 C LYS 31 -3.377 -8.905 1.767 1.00 0.00 C ATOM 227 O LYS 31 -3.468 -8.381 0.659 1.00 0.00 O ATOM 228 N LYS 32 -3.226 -10.230 1.917 1.00 0.00 N ATOM 229 CA LYS 32 -3.091 -11.096 0.783 1.00 0.00 C ATOM 230 CB LYS 32 -3.030 -12.585 1.178 1.00 0.00 C ATOM 231 CG LYS 32 -1.740 -13.019 1.873 1.00 0.00 C ATOM 232 CD LYS 32 -0.511 -12.986 0.963 1.00 0.00 C ATOM 233 CE LYS 32 -0.650 -13.921 -0.243 1.00 0.00 C ATOM 234 NZ LYS 32 0.573 -13.892 -1.072 1.00 0.00 N ATOM 235 C LYS 32 -4.304 -10.934 -0.074 1.00 0.00 C ATOM 236 O LYS 32 -4.213 -10.931 -1.300 1.00 0.00 O ATOM 237 N ALA 33 -5.480 -10.770 0.554 1.00 0.00 N ATOM 238 CA ALA 33 -6.698 -10.709 -0.197 1.00 0.00 C ATOM 239 CB ALA 33 -7.931 -10.477 0.690 1.00 0.00 C ATOM 240 C ALA 33 -6.626 -9.565 -1.161 1.00 0.00 C ATOM 241 O ALA 33 -7.022 -9.707 -2.318 1.00 0.00 O ATOM 242 N THR 34 -6.107 -8.405 -0.710 1.00 0.00 N ATOM 243 CA THR 34 -6.012 -7.241 -1.550 1.00 0.00 C ATOM 244 CB THR 34 -5.473 -6.034 -0.831 1.00 0.00 C ATOM 245 OG1 THR 34 -6.297 -5.718 0.281 1.00 0.00 O ATOM 246 CG2 THR 34 -5.437 -4.848 -1.811 1.00 0.00 C ATOM 247 C THR 34 -5.067 -7.552 -2.666 1.00 0.00 C ATOM 248 O THR 34 -5.289 -7.172 -3.815 1.00 0.00 O ATOM 249 N LYS 35 -3.981 -8.271 -2.335 1.00 0.00 N ATOM 250 CA LYS 35 -2.984 -8.630 -3.296 1.00 0.00 C ATOM 251 CB LYS 35 -1.818 -9.416 -2.673 1.00 0.00 C ATOM 252 CG LYS 35 -0.928 -8.542 -1.791 1.00 0.00 C ATOM 253 CD LYS 35 -0.319 -7.373 -2.568 1.00 0.00 C ATOM 254 CE LYS 35 0.444 -6.380 -1.696 1.00 0.00 C ATOM 255 NZ LYS 35 0.841 -5.212 -2.511 1.00 0.00 N ATOM 256 C LYS 35 -3.639 -9.489 -4.327 1.00 0.00 C ATOM 257 O LYS 35 -3.285 -9.449 -5.504 1.00 0.00 O ATOM 258 N LEU 36 -4.638 -10.281 -3.897 1.00 0.00 N ATOM 259 CA LEU 36 -5.348 -11.183 -4.760 1.00 0.00 C ATOM 260 CB LEU 36 -6.513 -11.885 -4.038 1.00 0.00 C ATOM 261 CG LEU 36 -7.328 -12.850 -4.923 1.00 0.00 C ATOM 262 CD1 LEU 36 -6.470 -14.037 -5.384 1.00 0.00 C ATOM 263 CD2 LEU 36 -8.631 -13.276 -4.225 1.00 0.00 C ATOM 264 C LEU 36 -5.958 -10.395 -5.874 1.00 0.00 C ATOM 265 O LEU 36 -5.939 -10.823 -7.027 1.00 0.00 O ATOM 266 N LYS 37 -6.497 -9.205 -5.565 1.00 0.00 N ATOM 267 CA LYS 37 -7.153 -8.417 -6.564 1.00 0.00 C ATOM 268 CB LYS 37 -7.630 -7.061 -6.021 1.00 0.00 C ATOM 269 CG LYS 37 -8.532 -6.300 -6.993 1.00 0.00 C ATOM 270 CD LYS 37 -9.935 -6.897 -7.105 1.00 0.00 C ATOM 271 CE LYS 37 -9.969 -8.314 -7.676 1.00 0.00 C ATOM 272 NZ LYS 37 -9.765 -8.288 -9.142 1.00 0.00 N ATOM 273 C LYS 37 -6.164 -8.131 -7.650 1.00 0.00 C ATOM 274 O LYS 37 -6.495 -8.191 -8.832 1.00 0.00 O ATOM 275 N ALA 38 -4.902 -7.852 -7.278 1.00 0.00 N ATOM 276 CA ALA 38 -3.927 -7.498 -8.269 1.00 0.00 C ATOM 277 CB ALA 38 -2.519 -7.272 -7.685 1.00 0.00 C ATOM 278 C ALA 38 -3.814 -8.623 -9.240 1.00 0.00 C ATOM 279 O ALA 38 -3.732 -8.396 -10.445 1.00 0.00 O ATOM 280 N ASP 39 -3.798 -9.878 -8.757 1.00 0.00 N ATOM 281 CA ASP 39 -3.728 -10.949 -9.705 1.00 0.00 C ATOM 282 CB ASP 39 -3.277 -12.281 -9.091 1.00 0.00 C ATOM 283 CG ASP 39 -1.792 -12.189 -8.759 1.00 0.00 C ATOM 284 OD1 ASP 39 -1.157 -11.158 -9.113 1.00 0.00 O ATOM 285 OD2 ASP 39 -1.278 -13.166 -8.151 1.00 0.00 O ATOM 286 C ASP 39 -5.121 -11.133 -10.191 1.00 0.00 C ATOM 287 O ASP 39 -5.775 -12.136 -9.905 1.00 0.00 O ATOM 288 N LYS 40 -5.588 -10.152 -10.983 1.00 0.00 N ATOM 289 CA LYS 40 -6.934 -10.096 -11.457 1.00 0.00 C ATOM 290 CB LYS 40 -7.265 -8.822 -12.257 1.00 0.00 C ATOM 291 CG LYS 40 -8.705 -8.834 -12.777 1.00 0.00 C ATOM 292 CD LYS 40 -9.286 -7.464 -13.130 1.00 0.00 C ATOM 293 CE LYS 40 -10.115 -6.845 -11.998 1.00 0.00 C ATOM 294 NZ LYS 40 -10.693 -5.557 -12.441 1.00 0.00 N ATOM 295 C LYS 40 -7.219 -11.263 -12.330 1.00 0.00 C ATOM 296 O LYS 40 -8.337 -11.775 -12.325 1.00 0.00 O ATOM 297 N ASP 41 -6.220 -11.719 -13.101 1.00 0.00 N ATOM 298 CA ASP 41 -6.487 -12.770 -14.041 1.00 0.00 C ATOM 299 CB ASP 41 -5.245 -13.205 -14.840 1.00 0.00 C ATOM 300 CG ASP 41 -5.686 -14.065 -16.024 1.00 0.00 C ATOM 301 OD1 ASP 41 -6.746 -14.737 -15.915 1.00 0.00 O ATOM 302 OD2 ASP 41 -4.966 -14.056 -17.060 1.00 0.00 O ATOM 303 C ASP 41 -6.997 -13.958 -13.296 1.00 0.00 C ATOM 304 O ASP 41 -7.984 -14.570 -13.701 1.00 0.00 O ATOM 305 N PHE 42 -6.355 -14.316 -12.171 1.00 0.00 N ATOM 306 CA PHE 42 -6.862 -15.428 -11.428 1.00 0.00 C ATOM 307 CB PHE 42 -5.761 -16.232 -10.714 1.00 0.00 C ATOM 308 CG PHE 42 -5.072 -17.013 -11.780 1.00 0.00 C ATOM 309 CD1 PHE 42 -4.189 -16.400 -12.635 1.00 0.00 C ATOM 310 CD2 PHE 42 -5.312 -18.363 -11.917 1.00 0.00 C ATOM 311 CE1 PHE 42 -3.563 -17.129 -13.619 1.00 0.00 C ATOM 312 CE2 PHE 42 -4.685 -19.095 -12.902 1.00 0.00 C ATOM 313 CZ PHE 42 -3.807 -18.475 -13.756 1.00 0.00 C ATOM 314 C PHE 42 -7.813 -14.868 -10.385 1.00 0.00 C ATOM 315 O PHE 42 -9.031 -15.188 -10.461 1.00 0.00 O ATOM 316 OXT PHE 42 -7.333 -14.119 -9.496 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 306 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 65.83 70.5 78 59.1 132 ARMSMC SECONDARY STRUCTURE . . 40.89 89.1 55 56.1 98 ARMSMC SURFACE . . . . . . . . 61.45 69.1 55 57.3 96 ARMSMC BURIED . . . . . . . . 75.29 73.9 23 63.9 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.15 30.0 30 55.6 54 ARMSSC1 RELIABLE SIDE CHAINS . 96.15 30.0 30 61.2 49 ARMSSC1 SECONDARY STRUCTURE . . 91.09 38.1 21 52.5 40 ARMSSC1 SURFACE . . . . . . . . 97.91 27.3 22 53.7 41 ARMSSC1 BURIED . . . . . . . . 91.13 37.5 8 61.5 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.67 59.3 27 61.4 44 ARMSSC2 RELIABLE SIDE CHAINS . 76.11 61.9 21 63.6 33 ARMSSC2 SECONDARY STRUCTURE . . 71.19 65.0 20 60.6 33 ARMSSC2 SURFACE . . . . . . . . 85.74 52.4 21 60.0 35 ARMSSC2 BURIED . . . . . . . . 46.06 83.3 6 66.7 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.56 33.3 15 68.2 22 ARMSSC3 RELIABLE SIDE CHAINS . 75.35 41.7 12 63.2 19 ARMSSC3 SECONDARY STRUCTURE . . 89.22 27.3 11 73.3 15 ARMSSC3 SURFACE . . . . . . . . 82.56 33.3 15 71.4 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.90 50.0 8 72.7 11 ARMSSC4 RELIABLE SIDE CHAINS . 82.90 50.0 8 72.7 11 ARMSSC4 SECONDARY STRUCTURE . . 69.44 66.7 6 75.0 8 ARMSSC4 SURFACE . . . . . . . . 82.90 50.0 8 72.7 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.76 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.76 40 59.7 67 CRMSCA CRN = ALL/NP . . . . . 0.1940 CRMSCA SECONDARY STRUCTURE . . 8.07 28 57.1 49 CRMSCA SURFACE . . . . . . . . 7.18 28 57.1 49 CRMSCA BURIED . . . . . . . . 8.96 12 66.7 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.95 196 59.8 328 CRMSMC SECONDARY STRUCTURE . . 8.29 138 57.3 241 CRMSMC SURFACE . . . . . . . . 7.57 137 57.1 240 CRMSMC BURIED . . . . . . . . 8.78 59 67.0 88 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.25 146 18.0 810 CRMSSC RELIABLE SIDE CHAINS . 10.16 128 16.6 772 CRMSSC SECONDARY STRUCTURE . . 10.39 108 17.6 615 CRMSSC SURFACE . . . . . . . . 9.69 110 18.0 610 CRMSSC BURIED . . . . . . . . 11.81 36 18.0 200 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.05 306 28.4 1078 CRMSALL SECONDARY STRUCTURE . . 9.32 220 27.1 811 CRMSALL SURFACE . . . . . . . . 8.62 222 27.5 806 CRMSALL BURIED . . . . . . . . 10.11 84 30.9 272 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.927 1.000 0.500 40 59.7 67 ERRCA SECONDARY STRUCTURE . . 7.175 1.000 0.500 28 57.1 49 ERRCA SURFACE . . . . . . . . 6.289 1.000 0.500 28 57.1 49 ERRCA BURIED . . . . . . . . 8.416 1.000 0.500 12 66.7 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.112 1.000 0.500 196 59.8 328 ERRMC SECONDARY STRUCTURE . . 7.352 1.000 0.500 138 57.3 241 ERRMC SURFACE . . . . . . . . 6.677 1.000 0.500 137 57.1 240 ERRMC BURIED . . . . . . . . 8.124 1.000 0.500 59 67.0 88 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.276 1.000 0.500 146 18.0 810 ERRSC RELIABLE SIDE CHAINS . 9.233 1.000 0.500 128 16.6 772 ERRSC SECONDARY STRUCTURE . . 9.379 1.000 0.500 108 17.6 615 ERRSC SURFACE . . . . . . . . 8.647 1.000 0.500 110 18.0 610 ERRSC BURIED . . . . . . . . 11.198 1.000 0.500 36 18.0 200 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.072 1.000 0.500 306 28.4 1078 ERRALL SECONDARY STRUCTURE . . 8.272 1.000 0.500 220 27.1 811 ERRALL SURFACE . . . . . . . . 7.597 1.000 0.500 222 27.5 806 ERRALL BURIED . . . . . . . . 9.329 1.000 0.500 84 30.9 272 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 3 5 11 34 40 67 DISTCA CA (P) 0.00 4.48 7.46 16.42 50.75 67 DISTCA CA (RMS) 0.00 1.48 1.93 3.21 6.41 DISTCA ALL (N) 1 7 26 81 222 306 1078 DISTALL ALL (P) 0.09 0.65 2.41 7.51 20.59 1078 DISTALL ALL (RMS) 0.78 1.50 2.37 3.64 6.49 DISTALL END of the results output