####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 52 ( 208), selected 52 , name T0559AL285_1-D1 # Molecule2: number of CA atoms 67 ( 1078), selected 52 , name T0559-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0559AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 15 - 68 1.45 1.45 LCS_AVERAGE: 77.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 15 - 68 1.45 1.45 LCS_AVERAGE: 77.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 23 - 57 0.99 1.59 LCS_AVERAGE: 37.77 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 52 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 15 I 15 5 52 52 5 17 34 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT W 16 W 16 5 52 52 5 17 35 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 17 E 17 5 52 52 5 17 31 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 18 A 18 5 52 52 5 17 35 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 19 L 19 5 52 52 5 17 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 21 G 21 3 52 52 0 3 24 39 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 22 T 22 3 52 52 0 3 27 28 43 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 23 E 23 34 52 52 3 27 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 24 G 24 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 25 L 25 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 26 T 26 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Q 27 Q 27 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 28 K 28 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT Q 29 Q 29 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 30 I 30 34 52 52 9 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 31 K 31 34 52 52 9 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 32 K 32 34 52 52 6 23 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 33 A 33 34 52 52 9 19 35 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 34 T 34 34 52 52 9 23 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 35 K 35 34 52 52 5 27 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 36 L 36 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT A 38 A 38 34 52 52 3 17 32 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 39 D 39 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 40 K 40 34 52 52 4 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 41 D 41 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 42 F 42 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 43 F 43 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 44 L 44 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 45 G 45 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 46 L 46 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 47 G 47 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT W 48 W 48 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 49 L 49 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 50 L 50 34 52 52 11 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT R 51 R 51 34 52 52 11 23 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 52 E 52 34 52 52 9 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT D 53 D 53 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 54 K 54 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 55 V 55 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 56 V 56 34 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT T 57 T 57 34 52 52 4 20 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT S 58 S 58 23 52 52 5 11 22 36 48 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 59 E 59 23 52 52 4 20 37 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 60 V 60 17 52 52 4 6 37 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 61 E 61 9 52 52 4 6 17 44 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT G 62 G 62 9 52 52 3 24 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT E 63 E 63 9 52 52 5 22 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT I 64 I 64 9 52 52 5 9 30 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT F 65 F 65 9 52 52 10 26 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT V 66 V 66 7 52 52 10 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT K 67 K 67 7 52 52 10 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_GDT L 68 L 68 7 52 52 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 LCS_AVERAGE LCS_A: 64.33 ( 37.77 77.61 77.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 29 38 45 50 52 52 52 52 52 52 52 52 52 52 52 52 52 52 52 GDT PERCENT_AT 17.91 43.28 56.72 67.16 74.63 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 77.61 GDT RMS_LOCAL 0.37 0.70 0.95 1.16 1.33 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 GDT RMS_ALL_AT 1.64 1.56 1.54 1.48 1.46 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 1.45 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 15 I 15 1.838 4 0.030 0.030 2.047 70.833 35.417 LGA W 16 W 16 1.726 10 0.018 0.018 1.827 72.857 20.816 LGA E 17 E 17 2.152 5 0.085 0.085 2.367 64.762 28.783 LGA A 18 A 18 1.781 1 0.048 0.048 1.912 75.000 60.000 LGA L 19 L 19 1.221 4 0.121 0.121 1.496 81.429 40.714 LGA G 21 G 21 2.683 0 0.567 0.567 2.683 62.857 62.857 LGA T 22 T 22 3.262 3 0.567 0.567 3.262 61.429 35.102 LGA E 23 E 23 1.609 5 0.663 0.663 3.195 69.286 30.794 LGA G 24 G 24 0.752 0 0.047 0.047 0.894 90.476 90.476 LGA L 25 L 25 0.696 4 0.031 0.031 0.830 90.476 45.238 LGA T 26 T 26 0.959 3 0.035 0.035 1.001 88.214 50.408 LGA Q 27 Q 27 1.069 5 0.044 0.044 1.091 85.952 38.201 LGA K 28 K 28 0.944 5 0.030 0.030 0.948 90.476 40.212 LGA Q 29 Q 29 0.962 5 0.058 0.058 1.498 85.952 38.201 LGA I 30 I 30 1.233 4 0.069 0.069 1.407 81.429 40.714 LGA K 31 K 31 1.093 5 0.052 0.052 1.298 81.429 36.190 LGA K 32 K 32 1.934 5 0.075 0.075 1.967 72.857 32.381 LGA A 33 A 33 2.080 1 0.056 0.056 2.080 70.833 56.667 LGA T 34 T 34 1.715 3 0.040 0.040 1.804 72.857 41.633 LGA K 35 K 35 1.666 5 0.192 0.192 1.666 77.143 34.286 LGA L 36 L 36 1.065 4 0.126 0.126 1.972 79.405 39.702 LGA A 38 A 38 2.096 1 0.062 0.062 2.523 71.190 56.952 LGA D 39 D 39 0.858 4 0.125 0.125 1.224 88.214 44.107 LGA K 40 K 40 0.600 5 0.051 0.051 0.742 90.476 40.212 LGA D 41 D 41 0.791 4 0.107 0.107 0.828 90.476 45.238 LGA F 42 F 42 1.262 7 0.016 0.016 1.262 83.690 30.433 LGA F 43 F 43 1.058 7 0.035 0.035 1.058 85.952 31.255 LGA L 44 L 44 0.435 4 0.015 0.015 0.600 95.238 47.619 LGA G 45 G 45 0.271 0 0.038 0.038 0.271 100.000 100.000 LGA L 46 L 46 0.289 4 0.054 0.054 0.428 100.000 50.000 LGA G 47 G 47 0.968 0 0.097 0.097 1.142 88.214 88.214 LGA W 48 W 48 1.140 10 0.113 0.113 1.659 81.548 23.299 LGA L 49 L 49 0.731 4 0.039 0.039 0.732 90.476 45.238 LGA L 50 L 50 0.769 4 0.149 0.149 0.907 90.476 45.238 LGA R 51 R 51 1.519 7 0.054 0.054 1.552 77.143 28.052 LGA E 52 E 52 1.361 5 0.047 0.047 1.361 81.429 36.190 LGA D 53 D 53 0.690 4 0.060 0.060 0.931 90.476 45.238 LGA K 54 K 54 0.782 5 0.040 0.040 0.928 90.476 40.212 LGA V 55 V 55 0.784 3 0.064 0.064 1.116 88.214 50.408 LGA V 56 V 56 0.640 3 0.161 0.161 0.878 90.476 51.701 LGA T 57 T 57 1.566 3 0.127 0.127 3.215 69.524 39.728 LGA S 58 S 58 3.052 2 0.229 0.229 3.052 57.262 38.175 LGA E 59 E 59 1.843 5 0.175 0.175 2.215 72.976 32.434 LGA V 60 V 60 1.429 3 0.067 0.067 1.781 77.143 44.082 LGA E 61 E 61 2.229 5 0.129 0.129 2.229 70.833 31.481 LGA G 62 G 62 1.131 0 0.032 0.032 1.482 85.952 85.952 LGA E 63 E 63 1.416 5 0.160 0.160 2.087 75.119 33.386 LGA I 64 I 64 2.273 4 0.188 0.188 2.273 70.833 35.417 LGA F 65 F 65 1.047 7 0.067 0.067 1.425 83.690 30.433 LGA V 66 V 66 0.580 3 0.037 0.037 0.655 90.476 51.701 LGA K 67 K 67 0.423 5 0.053 0.053 0.807 97.619 43.386 LGA L 68 L 68 0.483 4 0.073 0.073 1.162 92.976 46.488 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 52 208 208 100.00 416 208 50.00 67 SUMMARY(RMSD_GDC): 1.454 1.417 1.417 63.351 34.493 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 52 67 4.0 52 1.45 66.418 72.414 3.347 LGA_LOCAL RMSD: 1.454 Number of atoms: 52 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.454 Number of assigned atoms: 52 Std_ASGN_ATOMS RMSD: 1.454 Standard rmsd on all 52 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.288465 * X + -0.665134 * Y + 0.688756 * Z + 25.088362 Y_new = -0.258846 * X + 0.746722 * Y + 0.612703 * Z + 0.461764 Z_new = -0.921839 * X + -0.001539 * Y + -0.387571 * Z + -0.991392 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.410259 1.172798 -3.137623 [DEG: -138.0976 67.1964 -179.7726 ] ZXZ: 2.297824 1.968791 -1.572465 [DEG: 131.6556 112.8034 -90.0956 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0559AL285_1-D1 REMARK 2: T0559-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0559AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 52 67 4.0 52 1.45 72.414 1.45 REMARK ---------------------------------------------------------- MOLECULE T0559AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3jthA ATOM 1 N ILE 15 5.560 -2.285 13.489 1.00 0.00 N ATOM 2 CA ILE 15 4.892 -3.358 12.772 1.00 0.00 C ATOM 3 C ILE 15 5.770 -4.604 12.773 1.00 0.00 C ATOM 4 O ILE 15 5.298 -5.707 13.037 1.00 0.00 O ATOM 5 N TRP 16 7.049 -4.429 12.467 1.00 0.00 N ATOM 6 CA TRP 16 7.961 -5.563 12.449 1.00 0.00 C ATOM 7 C TRP 16 8.040 -6.216 13.832 1.00 0.00 C ATOM 8 O TRP 16 8.037 -7.443 13.946 1.00 0.00 O ATOM 9 N GLU 17 8.106 -5.392 14.875 1.00 0.00 N ATOM 10 CA GLU 17 8.192 -5.895 16.239 1.00 0.00 C ATOM 11 C GLU 17 6.945 -6.704 16.594 1.00 0.00 C ATOM 12 O GLU 17 7.042 -7.753 17.234 1.00 0.00 O ATOM 13 N ALA 18 5.780 -6.217 16.164 1.00 0.00 N ATOM 14 CA ALA 18 4.511 -6.882 16.428 1.00 0.00 C ATOM 15 C ALA 18 4.409 -8.231 15.745 1.00 0.00 C ATOM 16 O ALA 18 3.680 -9.116 16.213 1.00 0.00 O ATOM 17 N LEU 19 5.124 -8.384 14.633 1.00 0.00 N ATOM 18 CA LEU 19 5.092 -9.634 13.880 1.00 0.00 C ATOM 19 C LEU 19 6.138 -10.611 14.367 1.00 0.00 C ATOM 20 O LEU 19 6.337 -11.659 13.761 1.00 0.00 O ATOM 21 N GLY 21 6.806 -10.255 15.459 1.00 0.00 N ATOM 22 CA GLY 21 7.826 -11.117 16.041 1.00 0.00 C ATOM 23 C GLY 21 7.200 -12.445 16.466 1.00 0.00 C ATOM 24 O GLY 21 6.377 -12.495 17.384 1.00 0.00 O ATOM 25 N THR 22 7.595 -13.516 15.788 1.00 0.00 N ATOM 26 CA THR 22 7.080 -14.851 16.075 1.00 0.00 C ATOM 27 C THR 22 5.554 -14.985 16.063 1.00 0.00 C ATOM 28 O THR 22 4.972 -15.703 16.885 1.00 0.00 O ATOM 29 N GLU 23 4.901 -14.299 15.130 1.00 0.00 N ATOM 30 CA GLU 23 3.455 -14.427 15.015 1.00 0.00 C ATOM 31 C GLU 23 2.855 -13.783 13.780 1.00 0.00 C ATOM 32 O GLU 23 3.458 -12.911 13.157 1.00 0.00 O ATOM 33 N GLY 24 1.647 -14.221 13.449 1.00 0.00 N ATOM 34 CA GLY 24 0.916 -13.699 12.306 1.00 0.00 C ATOM 35 C GLY 24 -0.234 -12.834 12.800 1.00 0.00 C ATOM 36 O GLY 24 -0.922 -13.186 13.773 1.00 0.00 O ATOM 37 N LEU 25 -0.445 -11.711 12.124 1.00 0.00 N ATOM 38 CA LEU 25 -1.531 -10.804 12.486 1.00 0.00 C ATOM 39 C LEU 25 -2.247 -10.283 11.245 1.00 0.00 C ATOM 40 O LEU 25 -1.641 -10.110 10.177 1.00 0.00 O ATOM 41 N THR 26 -3.544 -10.049 11.396 1.00 0.00 N ATOM 42 CA THR 26 -4.369 -9.510 10.324 1.00 0.00 C ATOM 43 C THR 26 -4.343 -7.985 10.451 1.00 0.00 C ATOM 44 O THR 26 -3.896 -7.442 11.466 1.00 0.00 O ATOM 45 N GLN 27 -4.830 -7.308 9.416 1.00 0.00 N ATOM 46 CA GLN 27 -4.902 -5.854 9.389 1.00 0.00 C ATOM 47 C GLN 27 -5.625 -5.341 10.642 1.00 0.00 C ATOM 48 O GLN 27 -5.176 -4.386 11.294 1.00 0.00 O ATOM 49 N LYS 28 -6.752 -5.969 10.968 1.00 0.00 N ATOM 50 CA LYS 28 -7.520 -5.551 12.129 1.00 0.00 C ATOM 51 C LYS 28 -6.749 -5.624 13.432 1.00 0.00 C ATOM 52 O LYS 28 -6.780 -4.689 14.233 1.00 0.00 O ATOM 53 N GLN 29 -6.058 -6.740 13.653 1.00 0.00 N ATOM 54 CA GLN 29 -5.273 -6.900 14.874 1.00 0.00 C ATOM 55 C GLN 29 -4.155 -5.864 14.940 1.00 0.00 C ATOM 56 O GLN 29 -3.883 -5.312 16.005 1.00 0.00 O ATOM 57 N ILE 30 -3.517 -5.598 13.800 1.00 0.00 N ATOM 58 CA ILE 30 -2.436 -4.623 13.718 1.00 0.00 C ATOM 59 C ILE 30 -2.873 -3.166 13.937 1.00 0.00 C ATOM 60 O ILE 30 -2.226 -2.420 14.684 1.00 0.00 O ATOM 61 N LYS 31 -3.959 -2.745 13.290 1.00 0.00 N ATOM 62 CA LYS 31 -4.380 -1.360 13.448 1.00 0.00 C ATOM 63 C LYS 31 -4.864 -1.079 14.864 1.00 0.00 C ATOM 64 O LYS 31 -4.653 0.019 15.386 1.00 0.00 O ATOM 65 N LYS 32 -5.474 -2.075 15.500 1.00 0.00 N ATOM 66 CA LYS 32 -5.965 -1.897 16.860 1.00 0.00 C ATOM 67 C LYS 32 -4.838 -1.933 17.885 1.00 0.00 C ATOM 68 O LYS 32 -4.847 -1.152 18.837 1.00 0.00 O ATOM 69 N ALA 33 -3.866 -2.821 17.692 1.00 0.00 N ATOM 70 CA ALA 33 -2.745 -2.926 18.626 1.00 0.00 C ATOM 71 C ALA 33 -1.727 -1.806 18.454 1.00 0.00 C ATOM 72 O ALA 33 -0.891 -1.600 19.326 1.00 0.00 O ATOM 73 N THR 34 -1.792 -1.082 17.340 1.00 0.00 N ATOM 74 CA THR 34 -0.868 0.032 17.105 1.00 0.00 C ATOM 75 C THR 34 -1.599 1.383 17.006 1.00 0.00 C ATOM 76 O THR 34 -0.963 2.458 16.951 1.00 0.00 O ATOM 77 N LYS 35 -2.932 1.326 17.002 1.00 0.00 N ATOM 78 CA LYS 35 -3.761 2.523 16.883 1.00 0.00 C ATOM 79 C LYS 35 -3.317 3.279 15.648 1.00 0.00 C ATOM 80 O LYS 35 -3.032 4.484 15.685 1.00 0.00 O ATOM 81 N LEU 36 -3.256 2.547 14.547 1.00 0.00 N ATOM 82 CA LEU 36 -2.839 3.094 13.270 1.00 0.00 C ATOM 83 C LEU 36 -4.031 2.975 12.327 1.00 0.00 C ATOM 84 O LEU 36 -4.738 1.966 12.342 1.00 0.00 O ATOM 85 N ALA 38 -4.270 4.012 11.533 1.00 0.00 N ATOM 86 CA ALA 38 -5.388 4.023 10.591 1.00 0.00 C ATOM 87 C ALA 38 -5.236 2.881 9.603 1.00 0.00 C ATOM 88 O ALA 38 -4.126 2.399 9.376 1.00 0.00 O ATOM 89 N ASP 39 -6.348 2.453 9.013 1.00 0.00 N ATOM 90 CA ASP 39 -6.300 1.389 8.022 1.00 0.00 C ATOM 91 C ASP 39 -5.398 1.807 6.861 1.00 0.00 C ATOM 92 O ASP 39 -4.574 1.019 6.396 1.00 0.00 O ATOM 93 N LYS 40 -5.539 3.052 6.411 1.00 0.00 N ATOM 94 CA LYS 40 -4.739 3.530 5.293 1.00 0.00 C ATOM 95 C LYS 40 -3.267 3.740 5.639 1.00 0.00 C ATOM 96 O LYS 40 -2.388 3.476 4.800 1.00 0.00 O ATOM 97 N ASP 41 -2.980 4.224 6.849 1.00 0.00 N ATOM 98 CA ASP 41 -1.582 4.421 7.233 1.00 0.00 C ATOM 99 C ASP 41 -0.927 3.054 7.235 1.00 0.00 C ATOM 100 O ASP 41 0.161 2.880 6.686 1.00 0.00 O ATOM 101 N PHE 42 -1.616 2.087 7.835 1.00 0.00 N ATOM 102 CA PHE 42 -1.116 0.718 7.931 1.00 0.00 C ATOM 103 C PHE 42 -0.933 0.106 6.552 1.00 0.00 C ATOM 104 O PHE 42 0.072 -0.554 6.283 1.00 0.00 O ATOM 105 N PHE 43 -1.916 0.329 5.688 1.00 0.00 N ATOM 106 CA PHE 43 -1.873 -0.194 4.328 1.00 0.00 C ATOM 107 C PHE 43 -0.616 0.253 3.604 1.00 0.00 C ATOM 108 O PHE 43 -0.023 -0.530 2.878 1.00 0.00 O ATOM 109 N LEU 44 -0.219 1.511 3.797 1.00 0.00 N ATOM 110 CA LEU 44 0.983 2.050 3.159 1.00 0.00 C ATOM 111 C LEU 44 2.269 1.403 3.686 1.00 0.00 C ATOM 112 O LEU 44 3.120 0.960 2.904 1.00 0.00 O ATOM 113 N GLY 45 2.419 1.370 5.010 1.00 0.00 N ATOM 114 CA GLY 45 3.606 0.778 5.629 1.00 0.00 C ATOM 115 C GLY 45 3.747 -0.685 5.274 1.00 0.00 C ATOM 116 O GLY 45 4.848 -1.161 5.016 1.00 0.00 O ATOM 117 N LEU 46 2.626 -1.394 5.262 1.00 0.00 N ATOM 118 CA LEU 46 2.632 -2.805 4.922 1.00 0.00 C ATOM 119 C LEU 46 3.099 -2.993 3.490 1.00 0.00 C ATOM 120 O LEU 46 3.974 -3.815 3.226 1.00 0.00 O ATOM 121 N GLY 47 2.515 -2.228 2.569 1.00 0.00 N ATOM 122 CA GLY 47 2.895 -2.312 1.162 1.00 0.00 C ATOM 123 C GLY 47 4.405 -2.135 1.054 1.00 0.00 C ATOM 124 O GLY 47 5.079 -2.906 0.378 1.00 0.00 O ATOM 125 N TRP 48 4.926 -1.124 1.748 1.00 0.00 N ATOM 126 CA TRP 48 6.355 -0.818 1.752 1.00 0.00 C ATOM 127 C TRP 48 7.177 -2.005 2.277 1.00 0.00 C ATOM 128 O TRP 48 8.186 -2.402 1.668 1.00 0.00 O ATOM 129 N LEU 49 6.746 -2.553 3.416 1.00 0.00 N ATOM 130 CA LEU 49 7.415 -3.693 4.043 1.00 0.00 C ATOM 131 C LEU 49 7.475 -4.876 3.075 1.00 0.00 C ATOM 132 O LEU 49 8.491 -5.574 2.998 1.00 0.00 O ATOM 133 N LEU 50 6.379 -5.090 2.348 1.00 0.00 N ATOM 134 CA LEU 50 6.283 -6.157 1.353 1.00 0.00 C ATOM 135 C LEU 50 7.428 -5.960 0.376 1.00 0.00 C ATOM 136 O LEU 50 8.317 -6.800 0.248 1.00 0.00 O ATOM 137 N ARG 51 7.372 -4.819 -0.304 1.00 0.00 N ATOM 138 CA ARG 51 8.342 -4.410 -1.311 1.00 0.00 C ATOM 139 C ARG 51 9.780 -4.761 -0.948 1.00 0.00 C ATOM 140 O ARG 51 10.504 -5.344 -1.756 1.00 0.00 O ATOM 141 N GLU 52 10.190 -4.396 0.265 1.00 0.00 N ATOM 142 CA GLU 52 11.546 -4.678 0.721 1.00 0.00 C ATOM 143 C GLU 52 11.656 -6.137 1.187 1.00 0.00 C ATOM 144 O GLU 52 12.676 -6.544 1.732 1.00 0.00 O ATOM 145 N ASP 53 10.594 -6.906 0.966 1.00 0.00 N ATOM 146 CA ASP 53 10.578 -8.309 1.339 1.00 0.00 C ATOM 147 C ASP 53 10.830 -8.615 2.801 1.00 0.00 C ATOM 148 O ASP 53 11.448 -9.633 3.111 1.00 0.00 O ATOM 149 N LYS 54 10.363 -7.754 3.701 1.00 0.00 N ATOM 150 CA LYS 54 10.557 -7.983 5.133 1.00 0.00 C ATOM 151 C LYS 54 9.343 -8.655 5.777 1.00 0.00 C ATOM 152 O LYS 54 9.421 -9.152 6.900 1.00 0.00 O ATOM 153 N VAL 55 8.227 -8.668 5.061 1.00 0.00 N ATOM 154 CA VAL 55 6.999 -9.273 5.558 1.00 0.00 C ATOM 155 C VAL 55 6.297 -9.999 4.423 1.00 0.00 C ATOM 156 O VAL 55 6.430 -9.607 3.267 1.00 0.00 O ATOM 157 N VAL 56 5.570 -11.066 4.748 1.00 0.00 N ATOM 158 CA VAL 56 4.836 -11.828 3.743 1.00 0.00 C ATOM 159 C VAL 56 3.391 -11.954 4.184 1.00 0.00 C ATOM 160 O VAL 56 3.026 -11.507 5.268 1.00 0.00 O ATOM 161 N THR 57 2.567 -12.570 3.348 1.00 0.00 N ATOM 162 CA THR 57 1.161 -12.733 3.678 1.00 0.00 C ATOM 163 C THR 57 0.719 -14.184 3.573 1.00 0.00 C ATOM 164 O THR 57 1.448 -15.033 3.044 1.00 0.00 O ATOM 165 N SER 58 -0.481 -14.441 4.090 1.00 0.00 N ATOM 166 CA SER 58 -1.119 -15.759 4.101 1.00 0.00 C ATOM 167 C SER 58 -2.617 -15.451 4.208 1.00 0.00 C ATOM 168 O SER 58 -3.096 -15.038 5.266 1.00 0.00 O ATOM 169 N GLU 59 -3.340 -15.638 3.105 1.00 0.00 N ATOM 170 CA GLU 59 -4.776 -15.343 3.019 1.00 0.00 C ATOM 171 C GLU 59 -5.730 -16.200 3.855 1.00 0.00 C ATOM 172 O GLU 59 -5.294 -17.096 4.579 1.00 0.00 O ATOM 173 N VAL 60 -7.032 -15.907 3.749 1.00 0.00 N ATOM 174 CA VAL 60 -8.078 -16.640 4.481 1.00 0.00 C ATOM 175 C VAL 60 -9.456 -15.956 4.461 1.00 0.00 C ATOM 176 O VAL 60 -9.669 -14.975 5.170 1.00 0.00 O ATOM 177 N GLU 61 -10.390 -16.490 3.676 1.00 0.00 N ATOM 178 CA GLU 61 -11.748 -15.941 3.571 1.00 0.00 C ATOM 179 C GLU 61 -11.813 -14.421 3.722 1.00 0.00 C ATOM 180 O GLU 61 -12.568 -13.904 4.552 1.00 0.00 O ATOM 181 N GLY 62 -11.023 -13.716 2.915 1.00 0.00 N ATOM 182 CA GLY 62 -10.972 -12.254 2.942 1.00 0.00 C ATOM 183 C GLY 62 -10.142 -11.705 4.104 1.00 0.00 C ATOM 184 O GLY 62 -9.989 -10.490 4.249 1.00 0.00 O ATOM 185 N GLU 63 -9.605 -12.604 4.923 1.00 0.00 N ATOM 186 CA GLU 63 -8.772 -12.220 6.060 1.00 0.00 C ATOM 187 C GLU 63 -7.318 -12.635 5.843 1.00 0.00 C ATOM 188 O GLU 63 -6.965 -13.810 5.962 1.00 0.00 O ATOM 189 N ILE 64 -6.478 -11.655 5.533 1.00 0.00 N ATOM 190 CA ILE 64 -5.057 -11.887 5.296 1.00 0.00 C ATOM 191 C ILE 64 -4.215 -11.754 6.568 1.00 0.00 C ATOM 192 O ILE 64 -4.484 -10.911 7.427 1.00 0.00 O ATOM 193 N PHE 65 -3.197 -12.596 6.690 1.00 0.00 N ATOM 194 CA PHE 65 -2.310 -12.546 7.848 1.00 0.00 C ATOM 195 C PHE 65 -0.898 -12.202 7.415 1.00 0.00 C ATOM 196 O PHE 65 -0.372 -12.769 6.449 1.00 0.00 O ATOM 197 N VAL 66 -0.285 -11.270 8.136 1.00 0.00 N ATOM 198 CA VAL 66 1.067 -10.858 7.846 1.00 0.00 C ATOM 199 C VAL 66 2.028 -11.504 8.828 1.00 0.00 C ATOM 200 O VAL 66 1.669 -11.776 9.977 1.00 0.00 O ATOM 201 N LYS 67 3.251 -11.745 8.367 1.00 0.00 N ATOM 202 CA LYS 67 4.284 -12.357 9.193 1.00 0.00 C ATOM 203 C LYS 67 5.639 -11.909 8.664 1.00 0.00 C ATOM 204 O LYS 67 5.743 -11.443 7.525 1.00 0.00 O ATOM 205 N LEU 68 6.680 -12.032 9.477 1.00 0.00 N ATOM 206 CA LEU 68 8.006 -11.626 9.028 1.00 0.00 C ATOM 207 C LEU 68 8.470 -12.550 7.917 1.00 0.00 C ATOM 208 O LEU 68 8.028 -13.690 7.832 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 37.35 83.7 98 74.2 132 ARMSMC SECONDARY STRUCTURE . . 18.90 89.0 73 74.5 98 ARMSMC SURFACE . . . . . . . . 40.71 81.7 71 74.0 96 ARMSMC BURIED . . . . . . . . 26.55 88.9 27 75.0 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 54 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 49 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 40 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 33 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 35 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 19 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.45 (Number of atoms: 52) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.45 52 77.6 67 CRMSCA CRN = ALL/NP . . . . . 0.0280 CRMSCA SECONDARY STRUCTURE . . 1.36 38 77.6 49 CRMSCA SURFACE . . . . . . . . 1.56 37 75.5 49 CRMSCA BURIED . . . . . . . . 1.17 15 83.3 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.42 208 63.4 328 CRMSMC SECONDARY STRUCTURE . . 1.36 152 63.1 241 CRMSMC SURFACE . . . . . . . . 1.50 148 61.7 240 CRMSMC BURIED . . . . . . . . 1.21 60 68.2 88 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 810 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 772 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 615 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 610 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 200 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.42 208 19.3 1078 CRMSALL SECONDARY STRUCTURE . . 1.36 152 18.7 811 CRMSALL SURFACE . . . . . . . . 1.50 148 18.4 806 CRMSALL BURIED . . . . . . . . 1.21 60 22.1 272 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.288 1.000 0.500 52 77.6 67 ERRCA SECONDARY STRUCTURE . . 1.210 1.000 0.500 38 77.6 49 ERRCA SURFACE . . . . . . . . 1.380 1.000 0.500 37 75.5 49 ERRCA BURIED . . . . . . . . 1.060 1.000 0.500 15 83.3 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.265 1.000 0.500 208 63.4 328 ERRMC SECONDARY STRUCTURE . . 1.211 1.000 0.500 152 63.1 241 ERRMC SURFACE . . . . . . . . 1.338 1.000 0.500 148 61.7 240 ERRMC BURIED . . . . . . . . 1.086 1.000 0.500 60 68.2 88 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 810 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 772 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 615 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 610 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 200 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.265 1.000 0.500 208 19.3 1078 ERRALL SECONDARY STRUCTURE . . 1.211 1.000 0.500 152 18.7 811 ERRALL SURFACE . . . . . . . . 1.338 1.000 0.500 148 18.4 806 ERRALL BURIED . . . . . . . . 1.086 1.000 0.500 60 22.1 272 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 44 50 52 52 52 67 DISTCA CA (P) 31.34 65.67 74.63 77.61 77.61 67 DISTCA CA (RMS) 0.72 1.16 1.34 1.45 1.45 DISTCA ALL (N) 88 182 204 208 208 208 1078 DISTALL ALL (P) 8.16 16.88 18.92 19.29 19.29 1078 DISTALL ALL (RMS) 0.74 1.18 1.36 1.42 1.42 DISTALL END of the results output