####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 103 ( 412), selected 103 , name T0557AL396_1-D1 # Molecule2: number of CA atoms 120 ( 1854), selected 103 , name T0557-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0557AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 103 1 - 125 4.83 4.83 LCS_AVERAGE: 85.83 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 77 - 122 1.98 5.02 LONGEST_CONTINUOUS_SEGMENT: 42 78 - 123 1.99 4.99 LCS_AVERAGE: 21.52 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 94 - 116 0.78 5.00 LCS_AVERAGE: 8.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 103 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 3 3 103 0 3 3 3 8 12 18 20 29 40 74 77 84 88 90 92 94 96 97 98 LCS_GDT R 2 R 2 3 3 103 0 3 3 13 16 20 45 59 75 79 83 85 88 89 91 94 95 96 97 98 LCS_GDT S 3 S 3 4 5 103 4 6 10 16 35 58 67 73 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 4 A 4 4 5 103 4 4 4 4 4 6 6 8 12 30 80 85 87 89 92 94 95 96 97 98 LCS_GDT T 5 T 5 4 5 103 4 4 4 4 4 24 29 73 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT D 6 D 6 4 5 103 4 4 4 4 8 17 36 54 65 72 80 85 88 89 91 93 95 96 97 98 LCS_GDT L 7 L 7 3 5 103 3 4 4 4 4 6 6 8 9 10 10 28 33 40 68 82 85 93 96 97 LCS_GDT L 8 L 8 3 4 103 3 3 4 4 4 5 5 8 9 10 22 28 65 70 76 88 94 95 96 98 LCS_GDT D 9 D 9 3 4 103 3 3 4 4 17 19 28 38 47 55 63 69 79 84 88 90 94 95 96 97 LCS_GDT E 10 E 10 3 4 103 3 4 12 16 19 22 31 45 53 59 66 80 82 88 90 92 94 95 96 98 LCS_GDT L 11 L 11 3 4 103 0 3 4 4 28 45 59 70 77 80 84 85 88 89 92 94 95 96 97 98 LCS_GDT N 12 N 12 3 9 103 2 19 34 51 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 13 A 13 3 9 103 0 3 3 19 50 66 70 75 79 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT R 19 R 19 7 9 103 3 15 34 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT I 20 I 20 7 9 103 22 31 40 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT E 21 E 21 7 9 103 11 31 40 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 22 A 22 7 9 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 23 K 23 7 9 103 20 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT R 24 R 24 7 9 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 25 A 25 7 9 103 4 31 38 52 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT S 26 S 26 3 5 103 3 3 3 5 10 11 15 23 24 37 67 80 84 87 88 91 94 95 97 98 LCS_GDT D 27 D 27 3 13 103 3 3 4 6 16 22 43 59 71 77 83 85 88 89 91 94 95 96 97 98 LCS_GDT M 28 M 28 11 14 103 3 20 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT G 29 G 29 11 23 103 3 17 31 50 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 30 K 30 11 23 103 6 17 37 53 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT S 31 S 31 11 23 103 7 17 38 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 32 V 32 11 23 103 7 17 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT M 33 M 33 11 23 103 7 17 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT E 34 E 34 11 23 103 7 17 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT T 35 T 35 11 23 103 7 17 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 36 V 36 11 23 103 7 19 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT I 37 I 37 11 23 103 7 17 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 38 A 38 11 23 103 3 14 37 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT F 39 F 39 11 23 103 3 15 34 49 61 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 40 A 40 4 23 103 3 8 13 29 42 63 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT N 41 N 41 4 23 103 3 3 5 24 41 59 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT E 42 E 42 4 23 103 3 28 35 50 61 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT D 46 D 46 4 23 103 3 10 28 53 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT G 47 G 47 4 23 103 3 4 7 10 23 60 69 75 79 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT G 48 G 48 8 23 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Y 49 Y 49 8 23 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 50 L 50 8 23 103 11 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 51 L 51 8 23 103 11 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 52 L 52 8 23 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT G 53 G 53 8 23 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 54 V 54 8 23 103 14 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT D 55 D 55 8 13 103 3 14 34 48 60 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT W 56 W 56 4 11 103 3 4 5 15 35 46 59 70 73 79 84 85 87 89 92 94 95 96 97 98 LCS_GDT A 57 A 57 4 9 103 3 4 7 14 19 31 46 60 66 72 79 84 87 89 92 94 95 96 97 98 LCS_GDT I 58 I 58 4 4 103 3 4 4 4 4 11 47 64 73 77 80 85 87 89 92 94 95 96 97 98 LCS_GDT N 59 N 59 4 4 103 3 4 4 4 4 4 4 5 6 7 7 29 33 42 62 82 84 90 92 95 LCS_GDT D 60 D 60 4 4 103 0 4 4 4 4 4 4 5 6 7 7 7 7 7 8 8 26 30 33 86 LCS_GDT L 71 L 71 3 3 103 3 3 3 3 3 13 20 26 45 56 76 80 85 89 92 94 95 96 97 98 LCS_GDT P 72 P 72 3 4 103 3 3 4 4 4 13 27 38 55 71 76 82 86 89 92 94 95 96 97 98 LCS_GDT D 73 D 73 3 4 103 3 3 4 4 5 7 18 39 55 71 77 82 86 89 92 94 95 96 97 98 LCS_GDT P 74 P 74 3 4 103 3 3 9 14 37 58 67 73 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT D 75 D 75 3 4 103 3 3 5 7 24 36 61 64 74 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 76 K 76 3 41 103 3 6 28 43 56 65 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 77 V 77 13 42 103 11 14 19 39 54 64 70 74 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Q 78 Q 78 13 42 103 11 14 37 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT R 79 R 79 13 42 103 11 17 36 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT D 80 D 80 13 42 103 11 17 31 50 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 81 L 81 13 42 103 11 14 37 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 82 A 82 13 42 103 11 26 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT S 83 S 83 13 42 103 11 21 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Q 84 Q 84 13 42 103 11 16 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT C 85 C 85 13 42 103 11 14 36 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 86 A 86 13 42 103 11 14 38 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT S 87 S 87 13 42 103 11 26 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT M 88 M 88 13 42 103 8 28 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 89 L 89 13 42 103 4 14 32 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT N 90 N 90 5 42 103 3 4 5 7 17 60 69 73 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 91 V 91 5 42 103 3 4 5 8 17 22 57 72 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT R 94 R 94 23 42 103 22 31 39 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT P 95 P 95 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT E 96 E 96 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT M 97 M 97 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Q 98 Q 98 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 99 L 99 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT E 100 E 100 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Q 101 Q 101 23 42 103 14 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 102 V 102 23 42 103 14 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT G 103 G 103 23 42 103 17 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT G 104 G 104 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 105 K 105 23 42 103 19 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT T 106 T 106 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 107 L 107 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT L 108 L 108 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 109 V 109 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 110 V 110 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Y 111 Y 111 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT V 112 V 112 23 42 103 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT P 113 P 113 23 42 103 15 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT E 114 E 114 23 42 103 8 24 39 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT A 115 A 115 23 42 103 5 15 36 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT D 116 D 116 23 42 103 6 15 37 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT H 119 H 119 14 42 103 2 4 16 34 42 59 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 120 K 120 4 42 103 1 12 25 42 57 65 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT P 121 P 121 4 42 103 3 3 4 5 17 52 69 73 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT I 122 I 122 4 42 103 3 3 8 34 52 64 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT Y 123 Y 123 4 42 103 8 14 20 38 51 64 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 124 K 124 4 30 103 3 14 25 40 57 65 70 75 80 83 84 85 88 89 92 94 95 96 97 98 LCS_GDT K 125 K 125 4 30 103 0 3 4 5 35 55 63 73 77 81 84 85 88 89 92 94 95 96 97 98 LCS_AVERAGE LCS_A: 38.75 ( 8.88 21.52 85.83 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 22 31 41 55 62 66 70 75 80 83 84 85 88 89 92 94 95 96 97 98 GDT PERCENT_AT 18.33 25.83 34.17 45.83 51.67 55.00 58.33 62.50 66.67 69.17 70.00 70.83 73.33 74.17 76.67 78.33 79.17 80.00 80.83 81.67 GDT RMS_LOCAL 0.35 0.54 1.07 1.39 1.52 1.65 1.87 2.08 2.40 2.53 2.60 2.67 2.97 3.04 3.34 3.50 3.59 3.71 3.85 4.00 GDT RMS_ALL_AT 5.21 5.20 5.02 4.92 4.92 4.95 4.93 4.92 4.86 4.87 4.88 4.89 4.84 4.84 4.97 4.93 4.91 4.90 4.88 4.86 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 10.712 4 0.538 0.538 11.068 0.000 0.000 LGA R 2 R 2 8.181 7 0.582 0.582 9.356 4.048 1.472 LGA S 3 S 3 5.701 2 0.652 0.652 6.690 18.333 12.222 LGA A 4 A 4 7.532 1 0.111 0.111 8.539 9.286 7.429 LGA T 5 T 5 5.613 3 0.154 0.154 6.281 20.357 11.633 LGA D 6 D 6 8.689 4 0.613 0.613 11.548 4.048 2.024 LGA L 7 L 7 13.462 4 0.623 0.623 13.462 0.000 0.000 LGA L 8 L 8 12.178 4 0.302 0.302 12.766 0.000 0.000 LGA D 9 D 9 12.729 4 0.203 0.203 12.729 0.000 0.000 LGA E 10 E 10 11.542 5 0.551 0.551 12.001 0.119 0.053 LGA L 11 L 11 6.385 4 0.599 0.599 7.522 21.786 10.893 LGA N 12 N 12 2.264 4 0.679 0.679 5.735 46.548 23.274 LGA A 13 A 13 3.602 1 0.539 0.539 4.350 45.595 36.476 LGA R 19 R 19 1.871 7 0.042 0.042 2.485 72.976 26.537 LGA I 20 I 20 1.578 4 0.108 0.108 1.637 72.857 36.429 LGA E 21 E 21 1.721 5 0.035 0.035 1.721 72.857 32.381 LGA A 22 A 22 1.407 1 0.021 0.021 1.762 75.000 60.000 LGA K 23 K 23 1.506 5 0.023 0.023 1.506 79.286 35.238 LGA R 24 R 24 1.692 7 0.191 0.191 2.351 70.833 25.758 LGA A 25 A 25 2.254 1 0.624 0.624 3.011 61.071 48.857 LGA S 26 S 26 10.142 2 0.039 0.039 10.142 3.095 2.063 LGA D 27 D 27 7.005 4 0.181 0.181 8.148 22.381 11.190 LGA M 28 M 28 1.627 4 0.586 0.586 3.628 65.952 32.976 LGA G 29 G 29 2.652 0 0.397 0.397 2.652 66.905 66.905 LGA K 30 K 30 2.459 5 0.208 0.208 2.751 60.952 27.090 LGA S 31 S 31 2.019 2 0.012 0.012 2.068 66.786 44.524 LGA V 32 V 32 1.603 3 0.024 0.024 1.772 72.857 41.633 LGA M 33 M 33 1.832 4 0.072 0.072 1.832 72.857 36.429 LGA E 34 E 34 1.899 5 0.028 0.028 1.901 72.857 32.381 LGA T 35 T 35 1.634 3 0.041 0.041 1.797 77.143 44.082 LGA V 36 V 36 1.289 3 0.033 0.033 1.453 81.429 46.531 LGA I 37 I 37 1.568 4 0.055 0.055 1.568 77.143 38.571 LGA A 38 A 38 1.546 1 0.052 0.052 1.546 77.143 61.714 LGA F 39 F 39 3.256 7 0.044 0.044 3.256 57.262 20.823 LGA A 40 A 40 3.442 1 0.036 0.036 4.706 51.071 40.857 LGA N 41 N 41 4.383 4 0.674 0.674 4.560 42.143 21.071 LGA E 42 E 42 3.187 5 0.153 0.153 3.187 50.000 22.222 LGA D 46 D 46 2.073 4 0.598 0.598 2.073 72.976 36.488 LGA G 47 G 47 3.834 0 0.610 0.610 3.834 50.119 50.119 LGA G 48 G 48 1.240 0 0.231 0.231 1.545 79.286 79.286 LGA Y 49 Y 49 1.295 8 0.090 0.090 1.391 81.429 27.143 LGA L 50 L 50 1.301 4 0.066 0.066 1.301 81.429 40.714 LGA L 51 L 51 0.791 4 0.053 0.053 0.969 90.476 45.238 LGA L 52 L 52 1.060 4 0.049 0.049 1.144 83.690 41.845 LGA G 53 G 53 1.467 0 0.111 0.111 1.504 79.286 79.286 LGA V 54 V 54 1.621 3 0.061 0.061 3.354 63.214 36.122 LGA D 55 D 55 3.430 4 0.086 0.086 4.548 43.929 21.964 LGA W 56 W 56 6.193 10 0.025 0.025 6.525 19.524 5.578 LGA A 57 A 57 8.607 1 0.611 0.611 8.607 8.333 6.667 LGA I 58 I 58 6.367 4 0.582 0.582 9.484 9.167 4.583 LGA N 59 N 59 11.647 4 0.680 0.680 14.360 0.119 0.060 LGA D 60 D 60 15.133 4 0.648 0.648 18.723 0.000 0.000 LGA L 71 L 71 9.408 4 0.082 0.082 10.367 0.595 0.298 LGA P 72 P 72 9.693 3 0.144 0.144 9.769 0.714 0.408 LGA D 73 D 73 8.915 4 0.409 0.409 9.117 4.048 2.024 LGA P 74 P 74 5.289 3 0.594 0.594 6.008 25.238 14.422 LGA D 75 D 75 6.421 4 0.253 0.253 6.421 20.476 10.238 LGA K 76 K 76 3.707 5 0.620 0.620 4.628 47.738 21.217 LGA V 77 V 77 3.555 3 0.612 0.612 3.555 57.976 33.129 LGA Q 78 Q 78 1.988 5 0.096 0.096 2.642 71.071 31.587 LGA R 79 R 79 2.140 7 0.026 0.026 2.219 66.786 24.286 LGA D 80 D 80 2.645 4 0.110 0.110 2.645 60.952 30.476 LGA L 81 L 81 2.067 4 0.014 0.014 2.121 68.810 34.405 LGA A 82 A 82 1.006 1 0.101 0.101 1.284 83.690 66.952 LGA S 83 S 83 1.452 2 0.087 0.087 1.452 83.690 55.794 LGA Q 84 Q 84 1.898 5 0.025 0.025 1.898 72.857 32.381 LGA C 85 C 85 1.803 2 0.121 0.121 2.240 70.833 47.222 LGA A 86 A 86 1.489 1 0.072 0.072 1.761 79.286 63.429 LGA S 87 S 87 1.055 2 0.043 0.043 1.118 83.690 55.794 LGA M 88 M 88 0.600 4 0.117 0.117 1.275 85.952 42.976 LGA L 89 L 89 2.041 4 0.679 0.679 3.560 59.524 29.762 LGA N 90 N 90 4.671 4 0.283 0.283 5.511 30.595 15.298 LGA V 91 V 91 5.501 3 0.051 0.051 5.501 25.000 14.286 LGA R 94 R 94 1.035 7 0.049 0.049 1.135 85.952 31.255 LGA P 95 P 95 0.620 3 0.075 0.075 0.819 90.476 51.701 LGA E 96 E 96 0.819 5 0.071 0.071 0.838 90.476 40.212 LGA M 97 M 97 0.691 4 0.036 0.036 0.947 90.476 45.238 LGA Q 98 Q 98 0.898 5 0.013 0.013 0.944 90.476 40.212 LGA L 99 L 99 1.073 4 0.156 0.156 1.420 81.429 40.714 LGA E 100 E 100 1.175 5 0.177 0.177 1.511 79.286 35.238 LGA Q 101 Q 101 1.779 5 0.027 0.027 1.998 72.857 32.381 LGA V 102 V 102 1.976 3 0.415 0.415 1.976 77.143 44.082 LGA G 103 G 103 2.185 0 0.079 0.079 2.841 66.905 66.905 LGA G 104 G 104 1.653 0 0.198 0.198 1.917 77.143 77.143 LGA K 105 K 105 1.773 5 0.105 0.105 1.901 75.000 33.333 LGA T 106 T 106 1.772 3 0.176 0.176 2.012 70.833 40.476 LGA L 107 L 107 1.025 4 0.053 0.053 1.190 85.952 42.976 LGA L 108 L 108 0.732 4 0.046 0.046 0.886 92.857 46.429 LGA V 109 V 109 0.480 3 0.085 0.085 0.644 95.238 54.422 LGA V 110 V 110 0.520 3 0.095 0.095 0.574 92.857 53.061 LGA Y 111 Y 111 0.547 8 0.021 0.021 0.826 90.476 30.159 LGA V 112 V 112 0.800 3 0.094 0.094 0.800 90.476 51.701 LGA P 113 P 113 0.427 3 0.028 0.028 0.634 92.857 53.061 LGA E 114 E 114 0.869 5 0.014 0.014 0.869 90.476 40.212 LGA A 115 A 115 1.788 1 0.090 0.090 1.788 77.143 61.714 LGA D 116 D 116 1.471 4 0.673 0.673 2.269 75.119 37.560 LGA H 119 H 119 4.323 6 0.671 0.671 4.323 38.690 15.476 LGA K 120 K 120 3.276 5 0.057 0.057 4.702 42.143 18.730 LGA P 121 P 121 4.901 3 0.089 0.089 5.731 29.048 16.599 LGA I 122 I 122 3.704 4 0.107 0.107 3.766 46.667 23.333 LGA Y 123 Y 123 3.631 8 0.081 0.081 3.764 45.000 15.000 LGA K 124 K 124 3.012 5 0.677 0.677 3.980 46.667 20.741 LGA K 125 K 125 6.257 5 0.076 0.076 7.166 20.000 8.889 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 103 412 412 100.00 797 412 51.69 120 SUMMARY(RMSD_GDC): 4.826 4.808 4.808 47.963 26.935 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 103 120 4.0 75 2.08 53.125 47.431 3.439 LGA_LOCAL RMSD: 2.081 Number of atoms: 75 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.923 Number of assigned atoms: 103 Std_ASGN_ATOMS RMSD: 4.826 Standard rmsd on all 103 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.214337 * X + -0.909257 * Y + 0.356807 * Z + 14.598547 Y_new = 0.745226 * X + -0.083917 * Y + -0.661511 * Z + 111.110237 Z_new = 0.631426 * X + 0.407688 * Y + 0.659615 * Z + -15.120096 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.290741 -0.683390 0.553600 [DEG: 73.9540 -39.1554 31.7190 ] ZXZ: 0.494654 0.850490 0.997476 [DEG: 28.3416 48.7295 57.1512 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0557AL396_1-D1 REMARK 2: T0557-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0557AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 103 120 4.0 75 2.08 47.431 4.83 REMARK ---------------------------------------------------------- MOLECULE T0557AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3lmm_A ATOM 1 N MET 1 -10.206 -10.366 1.149 1.00 0.00 N ATOM 2 CA MET 1 -10.931 -10.701 -0.072 1.00 0.00 C ATOM 3 C MET 1 -10.013 -10.671 -1.302 1.00 0.00 C ATOM 4 O MET 1 -9.831 -11.683 -1.983 1.00 0.00 O ATOM 5 N ARG 2 -9.444 -9.503 -1.583 1.00 0.00 N ATOM 6 CA ARG 2 -8.543 -9.358 -2.714 1.00 0.00 C ATOM 7 C ARG 2 -7.555 -10.514 -2.717 1.00 0.00 C ATOM 8 O ARG 2 -7.316 -11.136 -3.752 1.00 0.00 O ATOM 9 N SER 3 -6.975 -10.804 -1.558 1.00 0.00 N ATOM 10 CA SER 3 -5.990 -11.876 -1.469 1.00 0.00 C ATOM 11 C SER 3 -6.544 -13.274 -1.706 1.00 0.00 C ATOM 12 O SER 3 -5.829 -14.157 -2.156 1.00 0.00 O ATOM 13 N ALA 4 -7.820 -13.475 -1.406 1.00 0.00 N ATOM 14 CA ALA 4 -8.436 -14.788 -1.582 1.00 0.00 C ATOM 15 C ALA 4 -8.656 -15.149 -3.056 1.00 0.00 C ATOM 16 O ALA 4 -8.795 -16.327 -3.395 1.00 0.00 O ATOM 17 N THR 5 -8.684 -14.139 -3.924 1.00 0.00 N ATOM 18 CA THR 5 -8.891 -14.352 -5.359 1.00 0.00 C ATOM 19 C THR 5 -7.603 -14.801 -6.036 1.00 0.00 C ATOM 20 O THR 5 -7.573 -15.073 -7.241 1.00 0.00 O ATOM 21 N ASP 6 -6.541 -14.862 -5.240 1.00 0.00 N ATOM 22 CA ASP 6 -5.217 -15.254 -5.707 1.00 0.00 C ATOM 23 C ASP 6 -5.248 -16.494 -6.590 1.00 0.00 C ATOM 24 O ASP 6 -5.716 -17.549 -6.173 1.00 0.00 O ATOM 25 N LEU 7 -4.730 -16.359 -7.806 1.00 0.00 N ATOM 26 CA LEU 7 -4.697 -17.454 -8.757 1.00 0.00 C ATOM 27 C LEU 7 -4.081 -16.977 -10.055 1.00 0.00 C ATOM 28 O LEU 7 -4.401 -15.888 -10.534 1.00 0.00 O ATOM 29 N LEU 8 -3.194 -17.793 -10.618 1.00 0.00 N ATOM 30 CA LEU 8 -2.532 -17.466 -11.879 1.00 0.00 C ATOM 31 C LEU 8 -1.505 -16.347 -11.719 1.00 0.00 C ATOM 32 O LEU 8 -1.285 -15.566 -12.642 1.00 0.00 O ATOM 33 N ASP 9 -0.881 -16.271 -10.550 1.00 0.00 N ATOM 34 CA ASP 9 0.115 -15.240 -10.325 1.00 0.00 C ATOM 35 C ASP 9 -0.421 -13.838 -10.070 1.00 0.00 C ATOM 36 O ASP 9 0.344 -12.921 -9.761 1.00 0.00 O ATOM 37 N GLU 10 -1.730 -13.648 -10.189 1.00 0.00 N ATOM 38 CA GLU 10 -2.295 -12.320 -9.956 1.00 0.00 C ATOM 39 C GLU 10 -3.538 -12.356 -9.074 1.00 0.00 C ATOM 40 O GLU 10 -4.072 -13.421 -8.774 1.00 0.00 O ATOM 41 N LEU 11 -3.990 -11.177 -8.664 1.00 0.00 N ATOM 42 CA LEU 11 -5.174 -11.064 -7.835 1.00 0.00 C ATOM 43 C LEU 11 -6.130 -10.129 -8.545 1.00 0.00 C ATOM 44 O LEU 11 -5.720 -9.373 -9.434 1.00 0.00 O ATOM 45 N ASN 12 -7.407 -10.198 -8.177 1.00 0.00 N ATOM 46 CA ASN 12 -8.423 -9.353 -8.800 1.00 0.00 C ATOM 47 C ASN 12 -9.268 -8.608 -7.780 1.00 0.00 C ATOM 48 O ASN 12 -9.346 -8.987 -6.613 1.00 0.00 O ATOM 49 N ALA 13 -9.898 -7.533 -8.232 1.00 0.00 N ATOM 50 CA ALA 13 -10.736 -6.741 -7.354 1.00 0.00 C ATOM 51 C ALA 13 -12.213 -7.004 -7.640 1.00 0.00 C ATOM 52 O ALA 13 -12.557 -7.779 -8.527 1.00 0.00 O ATOM 73 N ARG 19 -11.318 -0.079 -4.088 1.00 0.00 N ATOM 74 CA ARG 19 -10.457 1.006 -3.643 1.00 0.00 C ATOM 75 C ARG 19 -9.122 0.623 -3.036 1.00 0.00 C ATOM 76 O ARG 19 -8.285 1.490 -2.780 1.00 0.00 O ATOM 77 N ILE 20 -8.904 -0.663 -2.806 1.00 0.00 N ATOM 78 CA ILE 20 -7.642 -1.064 -2.230 1.00 0.00 C ATOM 79 C ILE 20 -6.527 -0.616 -3.174 1.00 0.00 C ATOM 80 O ILE 20 -6.614 -0.779 -4.390 1.00 0.00 O ATOM 81 N GLU 21 -5.491 -0.017 -2.596 1.00 0.00 N ATOM 82 CA GLU 21 -4.357 0.508 -3.349 1.00 0.00 C ATOM 83 C GLU 21 -3.271 -0.526 -3.608 1.00 0.00 C ATOM 84 O GLU 21 -2.568 -0.931 -2.681 1.00 0.00 O ATOM 85 N ALA 22 -3.132 -0.948 -4.866 1.00 0.00 N ATOM 86 CA ALA 22 -2.092 -1.917 -5.245 1.00 0.00 C ATOM 87 C ALA 22 -0.806 -1.176 -5.549 1.00 0.00 C ATOM 88 O ALA 22 -0.774 -0.348 -6.454 1.00 0.00 O ATOM 89 N LYS 23 0.250 -1.467 -4.801 1.00 0.00 N ATOM 90 CA LYS 23 1.530 -0.822 -5.044 1.00 0.00 C ATOM 91 C LYS 23 2.647 -1.839 -5.102 1.00 0.00 C ATOM 92 O LYS 23 2.649 -2.843 -4.383 1.00 0.00 O ATOM 93 N ARG 24 3.602 -1.537 -5.966 1.00 0.00 N ATOM 94 CA ARG 24 4.758 -2.361 -6.217 1.00 0.00 C ATOM 95 C ARG 24 6.014 -1.690 -5.671 1.00 0.00 C ATOM 96 O ARG 24 6.316 -0.562 -6.050 1.00 0.00 O ATOM 97 N ALA 25 6.742 -2.372 -4.790 1.00 0.00 N ATOM 98 CA ALA 25 7.958 -1.799 -4.216 1.00 0.00 C ATOM 99 C ALA 25 8.791 -1.236 -5.350 1.00 0.00 C ATOM 100 O ALA 25 9.298 -1.982 -6.192 1.00 0.00 O ATOM 101 N SER 26 15.407 2.724 0.997 1.00 0.00 N ATOM 102 CA SER 26 14.991 4.129 1.057 1.00 0.00 C ATOM 103 C SER 26 14.217 4.663 -0.143 1.00 0.00 C ATOM 104 O SER 26 13.270 5.419 0.029 1.00 0.00 O ATOM 105 N ASP 27 14.607 4.290 -1.353 1.00 0.00 N ATOM 106 CA ASP 27 13.887 4.775 -2.521 1.00 0.00 C ATOM 107 C ASP 27 12.435 4.317 -2.443 1.00 0.00 C ATOM 108 O ASP 27 11.520 5.093 -2.690 1.00 0.00 O ATOM 109 N MET 28 12.223 3.053 -2.098 1.00 0.00 N ATOM 110 CA MET 28 10.865 2.530 -1.997 1.00 0.00 C ATOM 111 C MET 28 10.116 3.223 -0.859 1.00 0.00 C ATOM 112 O MET 28 8.926 3.537 -0.985 1.00 0.00 O ATOM 113 N GLY 29 10.812 3.452 0.254 1.00 0.00 N ATOM 114 CA GLY 29 10.207 4.104 1.399 1.00 0.00 C ATOM 115 C GLY 29 9.648 5.458 0.983 1.00 0.00 C ATOM 116 O GLY 29 8.539 5.811 1.363 1.00 0.00 O ATOM 117 N LYS 30 10.411 6.210 0.197 1.00 0.00 N ATOM 118 CA LYS 30 9.958 7.516 -0.266 1.00 0.00 C ATOM 119 C LYS 30 8.608 7.381 -0.972 1.00 0.00 C ATOM 120 O LYS 30 7.603 7.902 -0.494 1.00 0.00 O ATOM 121 N SER 31 8.583 6.672 -2.097 1.00 0.00 N ATOM 122 CA SER 31 7.345 6.487 -2.860 1.00 0.00 C ATOM 123 C SER 31 6.150 6.022 -2.004 1.00 0.00 C ATOM 124 O SER 31 5.038 6.555 -2.123 1.00 0.00 O ATOM 125 N VAL 32 6.387 5.028 -1.150 1.00 0.00 N ATOM 126 CA VAL 32 5.355 4.483 -0.270 1.00 0.00 C ATOM 127 C VAL 32 4.851 5.540 0.724 1.00 0.00 C ATOM 128 O VAL 32 3.643 5.693 0.935 1.00 0.00 O ATOM 129 N MET 33 5.779 6.266 1.333 1.00 0.00 N ATOM 130 CA MET 33 5.394 7.301 2.263 1.00 0.00 C ATOM 131 C MET 33 4.507 8.287 1.507 1.00 0.00 C ATOM 132 O MET 33 3.461 8.689 2.004 1.00 0.00 O ATOM 133 N GLU 34 4.902 8.671 0.298 1.00 0.00 N ATOM 134 CA GLU 34 4.085 9.608 -0.464 1.00 0.00 C ATOM 135 C GLU 34 2.698 9.053 -0.705 1.00 0.00 C ATOM 136 O GLU 34 1.718 9.791 -0.651 1.00 0.00 O ATOM 137 N THR 35 2.609 7.755 -0.975 1.00 0.00 N ATOM 138 CA THR 35 1.306 7.157 -1.209 1.00 0.00 C ATOM 139 C THR 35 0.463 7.184 0.073 1.00 0.00 C ATOM 140 O THR 35 -0.733 7.477 0.033 1.00 0.00 O ATOM 141 N VAL 36 1.084 6.887 1.213 1.00 0.00 N ATOM 142 CA VAL 36 0.359 6.906 2.484 1.00 0.00 C ATOM 143 C VAL 36 -0.226 8.290 2.743 1.00 0.00 C ATOM 144 O VAL 36 -1.342 8.410 3.229 1.00 0.00 O ATOM 145 N ILE 37 0.525 9.335 2.420 1.00 0.00 N ATOM 146 CA ILE 37 -0.008 10.670 2.601 1.00 0.00 C ATOM 147 C ILE 37 -1.242 10.862 1.698 1.00 0.00 C ATOM 148 O ILE 37 -2.179 11.544 2.092 1.00 0.00 O ATOM 149 N ALA 38 -1.271 10.279 0.499 1.00 0.00 N ATOM 150 CA ALA 38 -2.470 10.452 -0.336 1.00 0.00 C ATOM 151 C ALA 38 -3.645 9.912 0.411 1.00 0.00 C ATOM 152 O ALA 38 -4.673 10.566 0.554 1.00 0.00 O ATOM 153 N PHE 39 -4.086 8.846 3.765 1.00 0.00 N ATOM 154 CA PHE 39 -4.407 9.546 4.998 1.00 0.00 C ATOM 155 C PHE 39 -5.088 10.884 4.736 1.00 0.00 C ATOM 156 O PHE 39 -5.882 11.342 5.550 1.00 0.00 O ATOM 157 N ALA 40 -4.786 11.501 3.598 1.00 0.00 N ATOM 158 CA ALA 40 -5.389 12.784 3.261 1.00 0.00 C ATOM 159 C ALA 40 -6.784 12.664 2.714 1.00 0.00 C ATOM 160 O ALA 40 -7.543 13.612 2.776 1.00 0.00 O ATOM 161 N ASN 41 -7.129 11.529 2.133 1.00 0.00 N ATOM 162 CA ASN 41 -8.478 11.412 1.604 1.00 0.00 C ATOM 163 C ASN 41 -9.362 10.946 2.753 1.00 0.00 C ATOM 164 O ASN 41 -8.965 10.082 3.537 1.00 0.00 O ATOM 165 N GLU 42 -10.576 11.500 2.871 1.00 0.00 N ATOM 166 CA GLU 42 -11.408 11.039 3.986 1.00 0.00 C ATOM 167 C GLU 42 -11.696 9.533 3.943 1.00 0.00 C ATOM 168 O GLU 42 -11.861 8.944 2.875 1.00 0.00 O ATOM 169 N ASP 46 -11.726 8.922 5.122 1.00 0.00 N ATOM 170 CA ASP 46 -11.993 7.505 5.226 1.00 0.00 C ATOM 171 C ASP 46 -10.730 6.686 5.119 1.00 0.00 C ATOM 172 O ASP 46 -10.747 5.468 5.301 1.00 0.00 O ATOM 173 N GLY 47 -9.623 7.357 4.827 1.00 0.00 N ATOM 174 CA GLY 47 -8.375 6.641 4.688 1.00 0.00 C ATOM 175 C GLY 47 -8.581 5.450 3.777 1.00 0.00 C ATOM 176 O GLY 47 -9.539 5.413 3.001 1.00 0.00 O ATOM 177 N GLY 48 -7.690 4.471 3.876 1.00 0.00 N ATOM 178 CA GLY 48 -7.797 3.287 3.046 1.00 0.00 C ATOM 179 C GLY 48 -6.684 2.302 3.333 1.00 0.00 C ATOM 180 O GLY 48 -5.934 2.456 4.305 1.00 0.00 O ATOM 181 N TYR 49 -6.576 1.283 2.482 1.00 0.00 N ATOM 182 CA TYR 49 -5.547 0.263 2.637 1.00 0.00 C ATOM 183 C TYR 49 -4.696 0.098 1.389 1.00 0.00 C ATOM 184 O TYR 49 -5.156 0.293 0.269 1.00 0.00 O ATOM 185 N LEU 50 -3.442 -0.266 1.618 1.00 0.00 N ATOM 186 CA LEU 50 -2.465 -0.480 0.572 1.00 0.00 C ATOM 187 C LEU 50 -1.901 -1.876 0.643 1.00 0.00 C ATOM 188 O LEU 50 -1.654 -2.388 1.732 1.00 0.00 O ATOM 189 N LEU 51 -1.690 -2.492 -0.510 1.00 0.00 N ATOM 190 CA LEU 51 -1.063 -3.791 -0.504 1.00 0.00 C ATOM 191 C LEU 51 0.232 -3.613 -1.281 1.00 0.00 C ATOM 192 O LEU 51 0.205 -3.476 -2.505 1.00 0.00 O ATOM 193 N LEU 52 1.355 -3.562 -0.567 1.00 0.00 N ATOM 194 CA LEU 52 2.648 -3.413 -1.212 1.00 0.00 C ATOM 195 C LEU 52 3.084 -4.779 -1.673 1.00 0.00 C ATOM 196 O LEU 52 3.059 -5.728 -0.900 1.00 0.00 O ATOM 197 N GLY 53 3.481 -4.878 -2.934 1.00 0.00 N ATOM 198 CA GLY 53 3.902 -6.161 -3.461 1.00 0.00 C ATOM 199 C GLY 53 2.962 -6.667 -4.539 1.00 0.00 C ATOM 200 O GLY 53 3.053 -7.816 -4.953 1.00 0.00 O ATOM 201 N VAL 54 2.042 -5.815 -4.981 1.00 0.00 N ATOM 202 CA VAL 54 1.115 -6.183 -6.043 1.00 0.00 C ATOM 203 C VAL 54 1.191 -5.136 -7.142 1.00 0.00 C ATOM 204 O VAL 54 0.945 -3.951 -6.900 1.00 0.00 O ATOM 205 N ASP 55 1.533 -5.575 -8.349 1.00 0.00 N ATOM 206 CA ASP 55 1.640 -4.668 -9.491 1.00 0.00 C ATOM 207 C ASP 55 0.328 -3.943 -9.706 1.00 0.00 C ATOM 208 O ASP 55 -0.744 -4.547 -9.681 1.00 0.00 O ATOM 209 N TRP 56 0.420 -2.644 -9.934 1.00 0.00 N ATOM 210 CA TRP 56 -0.756 -1.820 -10.154 1.00 0.00 C ATOM 211 C TRP 56 -1.585 -2.186 -11.388 1.00 0.00 C ATOM 212 O TRP 56 -1.054 -2.587 -12.415 1.00 0.00 O ATOM 213 N ALA 57 -2.899 -2.014 -11.278 1.00 0.00 N ATOM 214 CA ALA 57 -3.854 -2.298 -12.366 1.00 0.00 C ATOM 215 C ALA 57 -3.955 -3.768 -12.803 1.00 0.00 C ATOM 216 O ALA 57 -5.058 -4.300 -12.962 1.00 0.00 O ATOM 217 N ILE 58 -2.818 -4.421 -13.005 1.00 0.00 N ATOM 218 CA ILE 58 -2.851 -5.806 -13.417 1.00 0.00 C ATOM 219 C ILE 58 -3.213 -6.681 -12.221 1.00 0.00 C ATOM 220 O ILE 58 -4.138 -7.496 -12.278 1.00 0.00 O ATOM 221 N ASN 59 -2.485 -6.493 -11.128 1.00 0.00 N ATOM 222 CA ASN 59 -2.733 -7.285 -9.942 1.00 0.00 C ATOM 223 C ASN 59 -1.732 -8.420 -9.810 1.00 0.00 C ATOM 224 O ASN 59 -1.893 -9.285 -8.958 1.00 0.00 O ATOM 225 N ASP 60 -0.694 -8.421 -10.638 1.00 0.00 N ATOM 226 CA ASP 60 0.312 -9.470 -10.573 1.00 0.00 C ATOM 227 C ASP 60 1.090 -9.420 -9.272 1.00 0.00 C ATOM 228 O ASP 60 1.529 -8.349 -8.852 1.00 0.00 O ATOM 229 N LEU 71 1.261 -10.577 -8.634 1.00 0.00 N ATOM 230 CA LEU 71 2.007 -10.639 -7.374 1.00 0.00 C ATOM 231 C LEU 71 3.520 -10.529 -7.609 1.00 0.00 C ATOM 232 O LEU 71 4.095 -11.330 -8.340 1.00 0.00 O ATOM 233 N PRO 72 4.149 -9.537 -6.981 1.00 0.00 N ATOM 234 CA PRO 72 5.584 -9.320 -7.104 1.00 0.00 C ATOM 235 C PRO 72 6.224 -9.654 -5.767 1.00 0.00 C ATOM 236 O PRO 72 7.197 -10.397 -5.708 1.00 0.00 O ATOM 237 N ASP 73 5.676 -9.094 -4.693 1.00 0.00 N ATOM 238 CA ASP 73 6.209 -9.361 -3.365 1.00 0.00 C ATOM 239 C ASP 73 7.162 -8.300 -2.840 1.00 0.00 C ATOM 240 O ASP 73 7.561 -7.390 -3.566 1.00 0.00 O ATOM 241 N PRO 74 7.527 -8.419 -1.569 1.00 0.00 N ATOM 242 CA PRO 74 8.431 -7.467 -0.960 1.00 0.00 C ATOM 243 C PRO 74 8.974 -8.025 0.346 1.00 0.00 C ATOM 244 O PRO 74 8.254 -8.675 1.095 1.00 0.00 O ATOM 245 N ASP 75 10.255 -7.775 0.596 1.00 0.00 N ATOM 246 CA ASP 75 10.917 -8.277 1.787 1.00 0.00 C ATOM 247 C ASP 75 11.233 -7.157 2.763 1.00 0.00 C ATOM 248 O ASP 75 11.973 -7.347 3.728 1.00 0.00 O ATOM 249 N LYS 76 10.667 -5.985 2.507 1.00 0.00 N ATOM 250 CA LYS 76 10.901 -4.827 3.359 1.00 0.00 C ATOM 251 C LYS 76 10.591 -5.154 4.816 1.00 0.00 C ATOM 252 O LYS 76 9.575 -5.760 5.125 1.00 0.00 O ATOM 253 N VAL 77 11.477 -4.763 5.717 1.00 0.00 N ATOM 254 CA VAL 77 11.247 -5.030 7.120 1.00 0.00 C ATOM 255 C VAL 77 10.138 -4.112 7.617 1.00 0.00 C ATOM 256 O VAL 77 10.154 -2.906 7.367 1.00 0.00 O ATOM 257 N GLN 78 9.174 -4.692 8.325 1.00 0.00 N ATOM 258 CA GLN 78 8.049 -3.930 8.852 1.00 0.00 C ATOM 259 C GLN 78 8.492 -2.738 9.691 1.00 0.00 C ATOM 260 O GLN 78 8.177 -1.586 9.371 1.00 0.00 O ATOM 261 N ARG 79 9.202 -3.022 10.778 1.00 0.00 N ATOM 262 CA ARG 79 9.668 -1.966 11.665 1.00 0.00 C ATOM 263 C ARG 79 10.432 -0.897 10.898 1.00 0.00 C ATOM 264 O ARG 79 10.214 0.302 11.099 1.00 0.00 O ATOM 265 N ASP 80 11.321 -1.327 10.010 1.00 0.00 N ATOM 266 CA ASP 80 12.093 -0.377 9.226 1.00 0.00 C ATOM 267 C ASP 80 11.166 0.541 8.426 1.00 0.00 C ATOM 268 O ASP 80 11.256 1.764 8.524 1.00 0.00 O ATOM 269 N LEU 81 10.288 -0.060 7.630 1.00 0.00 N ATOM 270 CA LEU 81 9.348 0.695 6.827 1.00 0.00 C ATOM 271 C LEU 81 8.419 1.564 7.688 1.00 0.00 C ATOM 272 O LEU 81 8.211 2.734 7.384 1.00 0.00 O ATOM 273 N ALA 82 7.858 1.015 8.762 1.00 0.00 N ATOM 274 CA ALA 82 6.988 1.823 9.600 1.00 0.00 C ATOM 275 C ALA 82 7.745 3.068 10.057 1.00 0.00 C ATOM 276 O ALA 82 7.318 4.198 9.797 1.00 0.00 O ATOM 277 N SER 83 8.879 2.865 10.723 1.00 0.00 N ATOM 278 CA SER 83 9.711 3.973 11.211 1.00 0.00 C ATOM 279 C SER 83 10.176 4.897 10.085 1.00 0.00 C ATOM 280 O SER 83 10.297 6.110 10.272 1.00 0.00 O ATOM 281 N GLN 84 10.456 4.300 8.931 1.00 0.00 N ATOM 282 CA GLN 84 10.907 5.060 7.783 1.00 0.00 C ATOM 283 C GLN 84 9.832 5.988 7.249 1.00 0.00 C ATOM 284 O GLN 84 10.117 7.143 6.930 1.00 0.00 O ATOM 285 N CYS 85 8.597 5.496 7.157 1.00 0.00 N ATOM 286 CA CYS 85 7.496 6.319 6.665 1.00 0.00 C ATOM 287 C CYS 85 7.213 7.403 7.679 1.00 0.00 C ATOM 288 O CYS 85 7.052 8.571 7.326 1.00 0.00 O ATOM 289 N ALA 86 7.182 7.010 8.949 1.00 0.00 N ATOM 290 CA ALA 86 6.935 7.954 10.035 1.00 0.00 C ATOM 291 C ALA 86 7.935 9.115 10.083 1.00 0.00 C ATOM 292 O ALA 86 7.589 10.218 10.502 1.00 0.00 O ATOM 293 N SER 87 9.170 8.864 9.662 1.00 0.00 N ATOM 294 CA SER 87 10.178 9.908 9.695 1.00 0.00 C ATOM 295 C SER 87 9.999 10.936 8.610 1.00 0.00 C ATOM 296 O SER 87 10.334 12.095 8.809 1.00 0.00 O ATOM 297 N MET 88 9.480 10.535 7.459 1.00 0.00 N ATOM 298 CA MET 88 9.330 11.515 6.403 1.00 0.00 C ATOM 299 C MET 88 7.923 12.035 6.169 1.00 0.00 C ATOM 300 O MET 88 7.736 13.061 5.529 1.00 0.00 O ATOM 301 N LEU 89 6.927 11.367 6.720 1.00 0.00 N ATOM 302 CA LEU 89 5.563 11.802 6.472 1.00 0.00 C ATOM 303 C LEU 89 4.840 12.246 7.757 1.00 0.00 C ATOM 304 O LEU 89 3.830 12.956 7.705 1.00 0.00 O ATOM 305 N ASN 90 5.384 11.835 8.902 1.00 0.00 N ATOM 306 CA ASN 90 4.849 12.174 10.219 1.00 0.00 C ATOM 307 C ASN 90 3.706 11.271 10.676 1.00 0.00 C ATOM 308 O ASN 90 2.952 11.618 11.592 1.00 0.00 O ATOM 309 N VAL 91 3.577 10.108 10.048 1.00 0.00 N ATOM 310 CA VAL 91 2.532 9.166 10.412 1.00 0.00 C ATOM 311 C VAL 91 3.062 7.746 10.346 1.00 0.00 C ATOM 312 O VAL 91 3.838 7.401 9.458 1.00 0.00 O ATOM 313 N ARG 94 2.632 6.925 11.295 1.00 0.00 N ATOM 314 CA ARG 94 3.062 5.539 11.362 1.00 0.00 C ATOM 315 C ARG 94 1.879 4.601 11.114 1.00 0.00 C ATOM 316 O ARG 94 1.237 4.140 12.058 1.00 0.00 O ATOM 317 N PRO 95 1.591 4.288 9.835 1.00 0.00 N ATOM 318 CA PRO 95 0.477 3.403 9.482 1.00 0.00 C ATOM 319 C PRO 95 0.667 1.956 9.916 1.00 0.00 C ATOM 320 O PRO 95 1.793 1.483 10.048 1.00 0.00 O ATOM 321 N GLU 96 -0.445 1.265 10.147 1.00 0.00 N ATOM 322 CA GLU 96 -0.395 -0.129 10.554 1.00 0.00 C ATOM 323 C GLU 96 -0.108 -0.990 9.335 1.00 0.00 C ATOM 324 O GLU 96 -0.919 -1.058 8.417 1.00 0.00 O ATOM 325 N MET 97 1.055 -1.633 9.326 1.00 0.00 N ATOM 326 CA MET 97 1.443 -2.494 8.214 1.00 0.00 C ATOM 327 C MET 97 1.583 -3.927 8.706 1.00 0.00 C ATOM 328 O MET 97 2.253 -4.170 9.708 1.00 0.00 O ATOM 329 N GLN 98 0.938 -4.862 8.005 1.00 0.00 N ATOM 330 CA GLN 98 0.994 -6.279 8.364 1.00 0.00 C ATOM 331 C GLN 98 1.368 -7.127 7.155 1.00 0.00 C ATOM 332 O GLN 98 0.910 -6.874 6.037 1.00 0.00 O ATOM 333 N LEU 99 2.214 -8.126 7.395 1.00 0.00 N ATOM 334 CA LEU 99 2.670 -9.030 6.347 1.00 0.00 C ATOM 335 C LEU 99 1.569 -10.013 6.010 1.00 0.00 C ATOM 336 O LEU 99 0.695 -10.289 6.825 1.00 0.00 O ATOM 337 N GLU 100 1.622 -10.545 4.798 1.00 0.00 N ATOM 338 CA GLU 100 0.631 -11.493 4.312 1.00 0.00 C ATOM 339 C GLU 100 1.317 -12.353 3.275 1.00 0.00 C ATOM 340 O GLU 100 2.350 -11.964 2.726 1.00 0.00 O ATOM 341 N GLN 101 0.739 -13.517 2.999 1.00 0.00 N ATOM 342 CA GLN 101 1.299 -14.437 2.007 1.00 0.00 C ATOM 343 C GLN 101 0.252 -14.837 0.967 1.00 0.00 C ATOM 344 O GLN 101 -0.725 -15.493 1.302 1.00 0.00 O ATOM 345 N VAL 102 0.452 -14.429 -0.286 1.00 0.00 N ATOM 346 CA VAL 102 -0.475 -14.796 -1.351 1.00 0.00 C ATOM 347 C VAL 102 -0.042 -16.111 -1.970 1.00 0.00 C ATOM 348 O VAL 102 -0.061 -17.142 -1.312 1.00 0.00 O ATOM 349 N GLY 103 0.363 -16.097 -3.231 1.00 0.00 N ATOM 350 CA GLY 103 0.758 -17.347 -3.834 1.00 0.00 C ATOM 351 C GLY 103 2.133 -17.789 -3.356 1.00 0.00 C ATOM 352 O GLY 103 2.964 -18.266 -4.130 1.00 0.00 O ATOM 353 N GLY 104 2.355 -17.663 -2.057 1.00 0.00 N ATOM 354 CA GLY 104 3.632 -18.054 -1.498 1.00 0.00 C ATOM 355 C GLY 104 4.497 -16.822 -1.364 1.00 0.00 C ATOM 356 O GLY 104 5.447 -16.789 -0.575 1.00 0.00 O ATOM 357 N LYS 105 4.163 -15.801 -2.147 1.00 0.00 N ATOM 358 CA LYS 105 4.899 -14.559 -2.110 1.00 0.00 C ATOM 359 C LYS 105 4.470 -13.767 -0.891 1.00 0.00 C ATOM 360 O LYS 105 3.372 -13.962 -0.375 1.00 0.00 O ATOM 361 N THR 106 5.349 -12.886 -0.424 1.00 0.00 N ATOM 362 CA THR 106 5.066 -12.060 0.745 1.00 0.00 C ATOM 363 C THR 106 4.598 -10.683 0.324 1.00 0.00 C ATOM 364 O THR 106 5.080 -10.144 -0.667 1.00 0.00 O ATOM 365 N LEU 107 3.652 -10.112 1.061 1.00 0.00 N ATOM 366 CA LEU 107 3.187 -8.766 0.738 1.00 0.00 C ATOM 367 C LEU 107 2.849 -7.998 2.001 1.00 0.00 C ATOM 368 O LEU 107 2.499 -8.586 3.025 1.00 0.00 O ATOM 369 N LEU 108 2.980 -6.678 1.940 1.00 0.00 N ATOM 370 CA LEU 108 2.657 -5.855 3.095 1.00 0.00 C ATOM 371 C LEU 108 1.303 -5.179 2.956 1.00 0.00 C ATOM 372 O LEU 108 1.018 -4.520 1.960 1.00 0.00 O ATOM 373 N VAL 109 0.463 -5.362 3.962 1.00 0.00 N ATOM 374 CA VAL 109 -0.838 -4.735 3.963 1.00 0.00 C ATOM 375 C VAL 109 -0.657 -3.497 4.818 1.00 0.00 C ATOM 376 O VAL 109 -0.345 -3.604 5.999 1.00 0.00 O ATOM 377 N VAL 110 -0.812 -2.323 4.225 1.00 0.00 N ATOM 378 CA VAL 110 -0.671 -1.115 5.009 1.00 0.00 C ATOM 379 C VAL 110 -2.023 -0.447 5.202 1.00 0.00 C ATOM 380 O VAL 110 -2.703 -0.093 4.234 1.00 0.00 O ATOM 381 N TYR 111 -2.409 -0.279 6.461 1.00 0.00 N ATOM 382 CA TYR 111 -3.681 0.337 6.782 1.00 0.00 C ATOM 383 C TYR 111 -3.447 1.752 7.271 1.00 0.00 C ATOM 384 O TYR 111 -2.868 1.977 8.340 1.00 0.00 O ATOM 385 N VAL 112 -3.892 2.714 6.477 1.00 0.00 N ATOM 386 CA VAL 112 -3.723 4.102 6.846 1.00 0.00 C ATOM 387 C VAL 112 -5.076 4.749 7.150 1.00 0.00 C ATOM 388 O VAL 112 -6.017 4.646 6.369 1.00 0.00 O ATOM 389 N PRO 113 -5.166 5.375 8.325 1.00 0.00 N ATOM 390 CA PRO 113 -6.382 6.041 8.790 1.00 0.00 C ATOM 391 C PRO 113 -6.426 7.491 8.337 1.00 0.00 C ATOM 392 O PRO 113 -5.386 8.087 8.053 1.00 0.00 O ATOM 393 N GLU 114 -7.630 8.052 8.268 1.00 0.00 N ATOM 394 CA GLU 114 -7.809 9.438 7.854 1.00 0.00 C ATOM 395 C GLU 114 -7.091 10.359 8.836 1.00 0.00 C ATOM 396 O GLU 114 -7.248 10.230 10.053 1.00 0.00 O ATOM 397 N ALA 115 -6.302 11.284 8.299 1.00 0.00 N ATOM 398 CA ALA 115 -5.541 12.220 9.114 1.00 0.00 C ATOM 399 C ALA 115 -6.436 13.291 9.691 1.00 0.00 C ATOM 400 O ALA 115 -7.403 13.697 9.059 1.00 0.00 O ATOM 401 N ASP 116 -6.122 13.765 10.890 1.00 0.00 N ATOM 402 CA ASP 116 -6.953 14.801 11.487 1.00 0.00 C ATOM 403 C ASP 116 -6.616 16.165 10.881 1.00 0.00 C ATOM 404 O ASP 116 -7.303 17.157 11.135 1.00 0.00 O ATOM 405 N HIS 119 -5.554 16.201 10.075 1.00 0.00 N ATOM 406 CA HIS 119 -5.104 17.426 9.394 1.00 0.00 C ATOM 407 C HIS 119 -4.309 17.009 8.169 1.00 0.00 C ATOM 408 O HIS 119 -3.785 15.898 8.121 1.00 0.00 O ATOM 409 N LYS 120 -4.211 17.886 7.163 1.00 0.00 N ATOM 410 CA LYS 120 -3.458 17.530 5.958 1.00 0.00 C ATOM 411 C LYS 120 -2.047 17.019 6.214 1.00 0.00 C ATOM 412 O LYS 120 -1.310 17.550 7.044 1.00 0.00 O ATOM 413 N PRO 121 -1.688 15.968 5.488 1.00 0.00 N ATOM 414 CA PRO 121 -0.372 15.351 5.607 1.00 0.00 C ATOM 415 C PRO 121 0.395 15.629 4.322 1.00 0.00 C ATOM 416 O PRO 121 0.070 15.070 3.274 1.00 0.00 O ATOM 417 N ILE 122 1.399 16.500 4.395 1.00 0.00 N ATOM 418 CA ILE 122 2.205 16.827 3.222 1.00 0.00 C ATOM 419 C ILE 122 3.211 15.717 2.958 1.00 0.00 C ATOM 420 O ILE 122 3.756 15.143 3.897 1.00 0.00 O ATOM 421 N TYR 123 3.457 15.405 1.688 1.00 0.00 N ATOM 422 CA TYR 123 4.388 14.330 1.372 1.00 0.00 C ATOM 423 C TYR 123 5.847 14.775 1.336 1.00 0.00 C ATOM 424 O TYR 123 6.170 15.911 1.660 1.00 0.00 O ATOM 425 N LYS 124 6.728 13.866 0.932 1.00 0.00 N ATOM 426 CA LYS 124 8.158 14.149 0.882 1.00 0.00 C ATOM 427 C LYS 124 8.542 15.370 0.064 1.00 0.00 C ATOM 428 O LYS 124 9.598 15.955 0.286 1.00 0.00 O ATOM 429 N LYS 125 7.688 15.736 -0.886 1.00 0.00 N ATOM 430 CA LYS 125 7.929 16.887 -1.750 1.00 0.00 C ATOM 431 C LYS 125 7.065 18.084 -1.329 1.00 0.00 C ATOM 432 O LYS 125 6.858 19.019 -2.107 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 412 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 72.70 61.5 156 66.4 235 ARMSMC SECONDARY STRUCTURE . . 70.77 62.6 107 76.4 140 ARMSMC SURFACE . . . . . . . . 69.36 60.9 87 59.2 147 ARMSMC BURIED . . . . . . . . 76.71 62.3 69 78.4 88 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 84 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 75 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 38 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 14 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.83 (Number of atoms: 103) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.83 103 85.8 120 CRMSCA CRN = ALL/NP . . . . . 0.0469 CRMSCA SECONDARY STRUCTURE . . 4.20 65 92.9 70 CRMSCA SURFACE . . . . . . . . 5.29 62 81.6 76 CRMSCA BURIED . . . . . . . . 4.01 41 93.2 44 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.81 412 69.7 591 CRMSMC SECONDARY STRUCTURE . . 4.14 260 74.5 349 CRMSMC SURFACE . . . . . . . . 5.33 248 66.0 376 CRMSMC BURIED . . . . . . . . 3.90 164 76.3 215 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1374 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1302 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 841 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 862 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 512 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.81 412 22.2 1854 CRMSALL SECONDARY STRUCTURE . . 4.14 260 23.2 1121 CRMSALL SURFACE . . . . . . . . 5.33 248 21.3 1166 CRMSALL BURIED . . . . . . . . 3.90 164 23.8 688 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.665 1.000 0.500 103 85.8 120 ERRCA SECONDARY STRUCTURE . . 3.126 1.000 0.500 65 92.9 70 ERRCA SURFACE . . . . . . . . 4.076 1.000 0.500 62 81.6 76 ERRCA BURIED . . . . . . . . 3.044 1.000 0.500 41 93.2 44 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.628 1.000 0.500 412 69.7 591 ERRMC SECONDARY STRUCTURE . . 3.075 1.000 0.500 260 74.5 349 ERRMC SURFACE . . . . . . . . 4.067 1.000 0.500 248 66.0 376 ERRMC BURIED . . . . . . . . 2.963 1.000 0.500 164 76.3 215 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1374 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1302 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 841 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 862 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 512 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.628 1.000 0.500 412 22.2 1854 ERRALL SECONDARY STRUCTURE . . 3.075 1.000 0.500 260 23.2 1121 ERRALL SURFACE . . . . . . . . 4.067 1.000 0.500 248 21.3 1166 ERRALL BURIED . . . . . . . . 2.963 1.000 0.500 164 23.8 688 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 3 46 63 81 96 103 120 DISTCA CA (P) 2.50 38.33 52.50 67.50 80.00 120 DISTCA CA (RMS) 0.55 1.52 1.79 2.49 3.79 DISTCA ALL (N) 17 184 252 324 387 412 1854 DISTALL ALL (P) 0.92 9.92 13.59 17.48 20.87 1854 DISTALL ALL (RMS) 0.72 1.50 1.77 2.47 3.83 DISTALL END of the results output