####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 93 ( 372), selected 93 , name T0555AL285_1-D1 # Molecule2: number of CA atoms 134 ( 2173), selected 93 , name T0555-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0555AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 43 - 77 4.86 24.05 LCS_AVERAGE: 20.64 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 46 - 63 1.88 21.87 LCS_AVERAGE: 8.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 47 - 60 0.52 21.96 LCS_AVERAGE: 6.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 93 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 26 K 26 3 3 17 0 3 3 3 3 3 4 7 14 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT N 27 N 27 3 4 17 4 4 4 4 4 5 10 12 13 15 20 21 22 25 28 30 32 34 36 38 LCS_GDT A 28 A 28 3 4 17 4 4 4 4 4 5 6 11 14 16 20 21 22 24 28 30 32 34 36 38 LCS_GDT V 29 V 29 3 11 17 4 4 4 6 7 9 11 13 14 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT I 30 I 30 10 11 17 8 9 10 11 12 12 13 14 15 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT K 31 K 31 10 11 17 8 9 10 11 12 12 13 14 15 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT A 32 A 32 10 11 17 8 9 10 11 12 12 13 14 15 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT A 33 A 33 10 11 17 8 9 10 11 12 12 13 14 15 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT Y 34 Y 34 10 11 28 8 9 10 11 12 12 13 14 15 16 20 21 22 25 28 30 32 34 36 38 LCS_GDT R 35 R 35 10 11 28 8 9 10 11 12 12 13 14 15 16 20 21 23 25 28 30 32 34 36 38 LCS_GDT Q 36 Q 36 10 11 28 8 9 10 11 12 12 13 14 18 20 22 23 24 25 28 30 32 34 36 38 LCS_GDT I 37 I 37 10 11 28 8 9 10 11 12 12 13 14 15 16 20 22 24 25 28 30 32 34 36 38 LCS_GDT F 38 F 38 10 11 29 4 9 10 11 12 12 13 14 15 17 22 23 24 25 28 30 32 34 36 38 LCS_GDT E 39 E 39 10 11 30 4 4 10 11 13 16 17 19 20 22 22 23 24 25 28 30 32 34 37 41 LCS_GDT R 40 R 40 3 4 34 3 3 3 3 15 18 19 20 20 22 23 24 25 29 31 33 38 39 40 43 LCS_GDT I 42 I 42 0 7 34 0 0 4 17 17 18 19 20 20 22 23 24 26 29 32 34 38 39 40 43 LCS_GDT T 43 T 43 5 7 35 4 5 15 16 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT K 44 K 44 5 7 35 4 5 5 7 14 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT A 45 A 45 5 7 35 4 5 5 6 6 7 7 9 17 22 24 26 29 31 32 34 38 39 40 43 LCS_GDT Y 46 Y 46 5 18 35 4 5 10 17 17 18 19 21 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT S 47 S 47 14 18 35 6 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT Q 48 Q 48 14 18 35 8 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT S 49 S 49 14 18 35 7 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT I 50 I 50 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT S 51 S 51 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT Y 52 Y 52 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT L 53 L 53 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT E 54 E 54 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT S 55 S 55 14 18 35 7 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT Q 56 Q 56 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT V 57 V 57 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT R 58 R 58 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT N 59 N 59 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT G 60 G 60 14 18 35 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT D 61 D 61 12 18 35 4 10 13 14 15 18 19 20 24 26 28 30 31 31 32 33 36 37 39 40 LCS_GDT I 62 I 62 12 18 35 7 11 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT S 63 S 63 12 18 35 9 11 13 16 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT M 64 M 64 12 12 35 9 11 13 14 15 17 20 22 24 27 28 30 31 31 32 34 36 37 40 40 LCS_GDT K 65 K 65 12 12 35 9 11 13 14 16 17 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT E 66 E 66 12 12 35 9 11 13 14 16 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT F 67 F 67 12 12 35 9 11 13 14 16 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT V 68 V 68 12 12 35 9 11 13 14 15 16 19 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT R 69 R 69 12 12 35 9 11 13 14 15 16 18 21 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT R 70 R 70 12 12 35 9 11 13 14 15 16 17 21 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT L 71 L 71 12 12 35 9 11 13 14 15 16 17 21 24 26 28 30 31 31 32 34 38 39 40 43 LCS_GDT A 72 A 72 12 15 35 4 11 13 14 15 16 17 20 22 26 27 30 30 31 32 33 33 35 37 39 LCS_GDT K 73 K 73 11 15 35 3 11 12 13 14 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 LCS_GDT S 74 S 74 12 15 35 5 11 12 13 13 17 20 20 21 25 28 29 31 31 32 34 38 39 40 43 LCS_GDT P 75 P 75 12 15 35 5 11 12 13 13 14 16 19 20 23 25 26 27 28 29 31 38 39 40 43 LCS_GDT L 76 L 76 12 15 35 5 11 12 13 13 14 16 19 20 23 25 26 27 28 32 34 35 39 40 40 LCS_GDT Y 77 Y 77 12 15 35 5 11 12 13 15 18 20 20 21 26 28 29 31 31 32 34 38 39 40 43 LCS_GDT R 78 R 78 12 15 33 5 11 12 13 13 14 16 19 20 23 25 26 28 30 32 34 38 39 40 43 LCS_GDT K 79 K 79 12 15 27 5 11 12 13 13 14 16 19 20 23 25 26 27 28 29 32 38 39 40 43 LCS_GDT Q 80 Q 80 12 15 27 5 11 12 13 13 14 16 19 20 23 25 26 28 30 32 34 38 39 40 43 LCS_GDT F 81 F 81 12 15 27 5 11 12 13 13 14 16 19 20 23 25 26 27 28 30 33 38 39 40 43 LCS_GDT F 82 F 82 12 15 27 5 11 12 13 13 14 16 19 20 23 25 26 27 28 29 30 32 34 38 43 LCS_GDT E 83 E 83 12 15 27 4 8 12 13 13 14 16 19 20 23 25 26 27 28 29 30 31 34 38 43 LCS_GDT P 84 P 84 12 15 27 3 5 10 13 13 14 16 19 20 23 25 26 27 28 29 30 32 34 39 43 LCS_GDT F 85 F 85 12 15 27 4 11 12 13 13 14 16 17 20 23 25 26 27 28 29 30 32 34 36 38 LCS_GDT I 86 I 86 4 15 27 4 4 7 10 11 14 16 19 20 23 25 26 27 28 29 30 32 34 36 38 LCS_GDT N 87 N 87 4 5 27 4 4 4 4 5 7 11 14 18 23 25 26 27 28 29 30 31 33 35 37 LCS_GDT S 88 S 88 4 5 27 4 5 5 8 9 10 12 14 19 23 25 26 27 28 29 30 31 34 36 37 LCS_GDT R 89 R 89 4 5 27 4 4 4 6 6 8 14 19 20 23 25 26 27 28 29 30 32 34 36 38 LCS_GDT A 90 A 90 3 5 27 3 4 4 6 12 12 12 15 19 23 25 26 27 28 29 30 32 34 36 38 LCS_GDT L 91 L 91 3 5 27 3 3 9 11 12 12 16 19 20 23 25 26 27 28 29 30 32 34 36 38 LCS_GDT E 92 E 92 3 5 27 2 3 4 6 6 10 11 13 14 15 20 24 24 27 28 30 32 34 37 43 LCS_GDT L 93 L 93 3 3 26 0 3 3 4 5 6 8 9 12 15 15 17 21 22 25 28 31 38 39 43 LCS_GDT R 101 R 101 0 0 21 1 2 3 6 6 7 7 10 11 13 14 16 24 27 29 32 38 39 40 43 LCS_GDT G 102 G 102 4 5 16 3 4 4 4 5 6 6 6 7 9 9 13 14 18 23 23 24 36 38 38 LCS_GDT P 103 P 103 4 5 19 3 4 4 4 5 6 6 6 7 10 12 13 15 18 23 24 26 30 31 32 LCS_GDT S 104 S 104 4 5 21 3 4 4 4 5 6 8 10 11 15 17 17 19 22 24 26 27 30 31 34 LCS_GDT S 105 S 105 4 5 21 4 4 4 10 10 11 13 13 15 15 17 18 19 23 25 27 30 31 33 38 LCS_GDT R 106 R 106 3 5 21 3 3 3 4 5 7 13 14 15 16 17 19 22 25 28 30 32 34 36 38 LCS_GDT E 107 E 107 3 4 21 3 3 3 4 4 6 8 12 13 15 17 17 18 22 23 26 31 34 36 38 LCS_GDT E 108 E 108 3 10 21 3 3 6 7 10 10 10 12 13 15 19 23 25 27 29 30 32 34 36 38 LCS_GDT V 109 V 109 9 10 21 6 9 9 9 10 12 14 19 20 23 23 26 27 28 29 30 32 34 36 38 LCS_GDT Q 110 Q 110 9 10 21 6 9 9 9 10 13 16 19 20 23 25 26 27 28 29 30 31 34 36 37 LCS_GDT K 111 K 111 9 10 21 6 9 9 9 10 11 12 14 19 21 25 26 27 28 29 30 31 34 36 37 LCS_GDT Y 112 Y 112 9 10 21 6 9 9 9 10 11 12 15 19 21 25 26 27 28 29 30 32 34 36 38 LCS_GDT F 113 F 113 9 10 21 6 9 9 9 10 10 12 15 18 20 25 26 27 28 29 30 32 34 36 38 LCS_GDT S 114 S 114 9 10 21 6 9 9 9 10 10 11 12 15 19 21 23 26 27 29 29 31 34 36 37 LCS_GDT I 115 I 115 9 10 21 6 9 9 9 10 10 11 12 13 15 18 22 24 25 27 28 31 34 36 38 LCS_GDT V 116 V 116 9 10 21 6 9 9 9 10 11 12 14 15 16 18 22 24 25 28 30 32 34 36 38 LCS_GDT S 117 S 117 9 10 21 6 9 9 9 10 10 13 14 15 16 17 18 21 22 25 27 31 34 36 36 LCS_GDT A 123 A 123 9 9 21 6 7 8 9 11 11 12 14 15 16 17 19 22 25 28 30 32 34 36 38 LCS_GDT L 124 L 124 9 9 21 6 7 8 9 9 10 11 12 13 15 18 22 24 25 28 30 32 34 36 38 LCS_GDT V 125 V 125 9 9 21 6 7 8 9 9 10 11 12 13 15 18 22 24 25 28 30 32 34 36 38 LCS_GDT D 126 D 126 9 9 21 6 7 8 9 9 10 11 12 13 15 18 22 24 25 28 30 32 34 36 38 LCS_GDT A 127 A 127 9 9 21 6 7 8 9 9 10 11 12 13 15 18 22 24 25 27 30 32 34 36 38 LCS_GDT L 128 L 128 9 9 21 6 7 8 9 9 10 11 12 13 15 18 22 24 25 27 28 31 33 35 35 LCS_GDT V 129 V 129 9 9 21 3 7 8 9 9 10 11 12 13 15 18 22 24 25 27 28 31 33 35 35 LCS_GDT D 130 D 130 9 9 21 3 4 8 9 9 10 11 12 13 15 18 22 24 25 27 28 31 33 35 35 LCS_GDT S 131 S 131 9 9 17 3 3 8 9 9 10 11 12 13 14 18 22 24 25 27 28 31 33 35 35 LCS_AVERAGE LCS_A: 11.95 ( 6.78 8.44 20.64 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 14 15 17 17 18 20 22 24 27 28 30 31 31 32 34 38 39 40 43 GDT PERCENT_AT 6.72 10.45 11.19 12.69 12.69 13.43 14.93 16.42 17.91 20.15 20.90 22.39 23.13 23.13 23.88 25.37 28.36 29.10 29.85 32.09 GDT RMS_LOCAL 0.32 0.52 0.66 1.34 1.34 1.47 2.08 2.45 2.77 3.26 3.39 3.68 3.79 3.79 3.97 4.66 5.86 5.94 6.02 7.14 GDT RMS_ALL_AT 22.14 21.96 21.82 21.10 21.10 21.03 24.43 23.72 25.05 24.35 24.49 24.87 24.31 24.31 24.51 23.45 21.55 21.59 21.76 20.32 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 26 K 26 33.750 5 0.563 0.563 34.292 0.000 0.000 LGA N 27 N 27 28.500 4 0.581 0.581 29.984 0.000 0.000 LGA A 28 A 28 26.384 1 0.628 0.628 27.436 0.000 0.000 LGA V 29 V 29 26.945 3 0.575 0.575 28.489 0.000 0.000 LGA I 30 I 30 27.400 4 0.589 0.589 27.400 0.000 0.000 LGA K 31 K 31 23.722 5 0.049 0.049 25.265 0.000 0.000 LGA A 32 A 32 22.573 1 0.035 0.035 23.297 0.000 0.000 LGA A 33 A 33 24.029 1 0.006 0.006 24.029 0.000 0.000 LGA Y 34 Y 34 22.431 8 0.038 0.038 23.137 0.000 0.000 LGA R 35 R 35 19.173 7 0.121 0.121 20.366 0.000 0.000 LGA Q 36 Q 36 19.755 5 0.027 0.027 20.378 0.000 0.000 LGA I 37 I 37 22.405 4 0.047 0.047 22.405 0.000 0.000 LGA F 38 F 38 19.782 7 0.220 0.220 20.698 0.000 0.000 LGA E 39 E 39 16.010 5 0.288 0.288 17.532 0.000 0.000 LGA R 40 R 40 12.614 7 0.593 0.593 13.787 0.000 0.000 LGA I 42 I 42 10.177 4 0.622 0.622 10.177 4.286 2.143 LGA T 43 T 43 4.201 3 0.550 0.550 6.485 44.048 25.170 LGA K 44 K 44 3.951 5 0.262 0.262 4.914 42.738 18.995 LGA A 45 A 45 8.010 1 0.104 0.104 8.010 11.310 9.048 LGA Y 46 Y 46 5.808 8 0.270 0.270 5.808 30.833 10.278 LGA S 47 S 47 1.101 2 0.297 0.297 2.485 77.738 51.825 LGA Q 48 Q 48 0.831 5 0.250 0.250 1.398 83.690 37.196 LGA S 49 S 49 1.454 2 0.083 0.083 1.454 83.690 55.794 LGA I 50 I 50 0.620 4 0.046 0.046 0.986 95.238 47.619 LGA S 51 S 51 0.675 2 0.044 0.044 1.026 90.595 60.397 LGA Y 52 Y 52 1.372 8 0.033 0.033 1.372 81.429 27.143 LGA L 53 L 53 0.883 4 0.077 0.077 0.894 95.238 47.619 LGA E 54 E 54 0.541 5 0.153 0.153 1.596 88.452 39.312 LGA S 55 S 55 1.669 2 0.064 0.064 1.679 77.143 51.429 LGA Q 56 Q 56 0.402 5 0.091 0.091 1.212 92.976 41.323 LGA V 57 V 57 1.747 3 0.037 0.037 2.372 75.238 42.993 LGA R 58 R 58 2.352 7 0.115 0.115 2.913 64.881 23.593 LGA N 59 N 59 0.923 4 0.020 0.020 1.162 88.214 44.107 LGA G 60 G 60 1.701 0 0.583 0.583 4.522 58.929 58.929 LGA D 61 D 61 7.111 4 0.601 0.601 7.111 17.619 8.810 LGA I 62 I 62 4.561 4 0.030 0.030 5.624 33.333 16.667 LGA S 63 S 63 3.047 2 0.045 0.045 3.326 61.548 41.032 LGA M 64 M 64 3.722 4 0.113 0.113 3.722 46.667 23.333 LGA K 65 K 65 3.298 5 0.127 0.127 4.719 47.143 20.952 LGA E 66 E 66 3.363 5 0.018 0.018 5.142 46.071 20.476 LGA F 67 F 67 3.179 7 0.038 0.038 5.482 41.190 14.978 LGA V 68 V 68 6.448 3 0.031 0.031 8.436 15.833 9.048 LGA R 69 R 69 8.129 7 0.035 0.035 10.115 5.238 1.905 LGA R 70 R 70 8.368 7 0.056 0.056 10.197 3.333 1.212 LGA L 71 L 71 9.062 4 0.206 0.206 10.343 1.548 0.774 LGA A 72 A 72 11.864 1 0.358 0.358 11.864 0.119 0.095 LGA K 73 K 73 5.580 5 0.677 0.677 7.483 18.690 8.307 LGA S 74 S 74 6.572 2 0.106 0.106 8.148 13.571 9.048 LGA P 75 P 75 12.028 3 0.181 0.181 12.259 0.000 0.000 LGA L 76 L 76 10.911 4 0.278 0.278 11.214 1.429 0.714 LGA Y 77 Y 77 5.772 8 0.085 0.085 8.223 11.548 3.849 LGA R 78 R 78 10.847 7 0.078 0.078 13.986 0.714 0.260 LGA K 79 K 79 14.382 5 0.293 0.293 14.382 0.000 0.000 LGA Q 80 Q 80 10.377 5 0.049 0.049 11.590 0.000 0.000 LGA F 81 F 81 12.786 7 0.256 0.256 16.404 0.000 0.000 LGA F 82 F 82 18.707 7 0.115 0.115 21.819 0.000 0.000 LGA E 83 E 83 19.825 5 0.229 0.229 21.213 0.000 0.000 LGA P 84 P 84 19.587 3 0.371 0.371 22.038 0.000 0.000 LGA F 85 F 85 23.794 7 0.668 0.668 27.251 0.000 0.000 LGA I 86 I 86 26.955 4 0.472 0.472 26.955 0.000 0.000 LGA N 87 N 87 26.870 4 0.165 0.165 27.406 0.000 0.000 LGA S 88 S 88 29.219 2 0.073 0.073 29.842 0.000 0.000 LGA R 89 R 89 28.727 7 0.298 0.298 28.727 0.000 0.000 LGA A 90 A 90 26.717 1 0.031 0.031 27.368 0.000 0.000 LGA L 91 L 91 25.920 4 0.532 0.532 26.232 0.000 0.000 LGA E 92 E 92 24.439 5 0.594 0.594 25.460 0.000 0.000 LGA L 93 L 93 20.189 4 0.574 0.574 21.747 0.000 0.000 LGA R 101 R 101 17.495 7 0.081 0.081 17.495 0.000 0.000 LGA G 102 G 102 17.179 0 0.082 0.082 18.785 0.000 0.000 LGA P 103 P 103 20.385 3 0.177 0.177 23.989 0.000 0.000 LGA S 104 S 104 25.979 2 0.606 0.606 28.634 0.000 0.000 LGA S 105 S 105 30.290 2 0.033 0.033 32.276 0.000 0.000 LGA R 106 R 106 36.498 7 0.575 0.575 36.726 0.000 0.000 LGA E 107 E 107 38.705 5 0.605 0.605 38.705 0.000 0.000 LGA E 108 E 108 35.164 5 0.034 0.034 36.459 0.000 0.000 LGA V 109 V 109 39.151 3 0.494 0.494 40.787 0.000 0.000 LGA Q 110 Q 110 45.195 5 0.049 0.049 45.653 0.000 0.000 LGA K 111 K 111 44.187 5 0.062 0.062 44.196 0.000 0.000 LGA Y 112 Y 112 37.620 8 0.114 0.114 39.766 0.000 0.000 LGA F 113 F 113 40.429 7 0.055 0.055 42.067 0.000 0.000 LGA S 114 S 114 45.512 2 0.046 0.046 45.512 0.000 0.000 LGA I 115 I 115 40.927 4 0.021 0.021 42.353 0.000 0.000 LGA V 116 V 116 36.586 3 0.114 0.114 38.370 0.000 0.000 LGA S 117 S 117 42.344 2 0.042 0.042 43.696 0.000 0.000 LGA A 123 A 123 37.544 1 0.045 0.045 38.195 0.000 0.000 LGA L 124 L 124 36.284 4 0.055 0.055 36.432 0.000 0.000 LGA V 125 V 125 31.514 3 0.042 0.042 33.130 0.000 0.000 LGA D 126 D 126 34.900 4 0.053 0.053 37.744 0.000 0.000 LGA A 127 A 127 40.744 1 0.026 0.026 41.968 0.000 0.000 LGA L 128 L 128 38.394 4 0.102 0.102 38.920 0.000 0.000 LGA V 129 V 129 35.671 3 0.109 0.109 37.901 0.000 0.000 LGA D 130 D 130 40.163 4 0.191 0.191 43.508 0.000 0.000 LGA S 131 S 131 44.131 2 0.256 0.256 45.849 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 93 372 372 100.00 761 372 48.88 134 SUMMARY(RMSD_GDC): 15.317 15.236 15.236 12.330 6.540 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 93 134 4.0 22 2.45 16.231 14.440 0.861 LGA_LOCAL RMSD: 2.455 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 23.724 Number of assigned atoms: 93 Std_ASGN_ATOMS RMSD: 15.317 Standard rmsd on all 93 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.670719 * X + 0.364491 * Y + 0.645974 * Z + -35.747246 Y_new = -0.496153 * X + -0.867861 * Y + -0.025468 * Z + 107.988525 Z_new = 0.551333 * X + -0.337584 * Y + 0.762934 * Z + 18.277683 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.504694 -0.583962 -0.416583 [DEG: -143.5084 -33.4585 -23.8685 ] ZXZ: 1.531391 0.702956 2.120214 [DEG: 87.7423 40.2764 121.4793 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0555AL285_1-D1 REMARK 2: T0555-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0555AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 93 134 4.0 22 2.45 14.440 15.32 REMARK ---------------------------------------------------------- MOLECULE T0555AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1r22A ATOM 1 N LYS 26 -40.543 -23.411 10.513 1.00 0.00 N ATOM 2 CA LYS 26 -39.311 -23.531 9.682 1.00 0.00 C ATOM 3 C LYS 26 -38.025 -23.413 10.479 1.00 0.00 C ATOM 4 O LYS 26 -37.998 -23.298 11.711 1.00 0.00 O ATOM 5 N ASN 27 -36.940 -23.438 9.721 1.00 0.00 N ATOM 6 CA ASN 27 -35.620 -23.366 10.304 1.00 0.00 C ATOM 7 C ASN 27 -34.962 -22.031 10.032 1.00 0.00 C ATOM 8 O ASN 27 -34.986 -21.505 8.934 1.00 0.00 O ATOM 9 N ALA 28 -34.368 -21.500 11.072 1.00 0.00 N ATOM 10 CA ALA 28 -33.388 -20.426 11.005 1.00 0.00 C ATOM 11 C ALA 28 -32.108 -21.005 10.519 1.00 0.00 C ATOM 12 O ALA 28 -31.823 -22.165 10.753 1.00 0.00 O ATOM 13 N VAL 29 -31.274 -20.200 9.920 1.00 0.00 N ATOM 14 CA VAL 29 -29.906 -20.664 9.643 1.00 0.00 C ATOM 15 C VAL 29 -29.190 -21.078 10.921 1.00 0.00 C ATOM 16 O VAL 29 -29.450 -20.537 12.027 1.00 0.00 O ATOM 17 N ILE 30 -28.280 -22.050 10.758 1.00 0.00 N ATOM 18 CA ILE 30 -27.458 -22.563 11.858 1.00 0.00 C ATOM 19 C ILE 30 -26.741 -21.446 12.592 1.00 0.00 C ATOM 20 O ILE 30 -26.201 -20.565 11.957 1.00 0.00 O ATOM 21 N LYS 31 -26.667 -21.542 13.916 1.00 0.00 N ATOM 22 CA LYS 31 -25.872 -20.590 14.714 1.00 0.00 C ATOM 23 C LYS 31 -24.448 -20.285 14.153 1.00 0.00 C ATOM 24 O LYS 31 -24.089 -19.142 14.197 1.00 0.00 O ATOM 25 N ALA 32 -23.686 -21.265 13.682 1.00 0.00 N ATOM 26 CA ALA 32 -22.324 -21.070 13.137 1.00 0.00 C ATOM 27 C ALA 32 -22.322 -20.230 11.867 1.00 0.00 C ATOM 28 O ALA 32 -21.391 -19.497 11.584 1.00 0.00 O ATOM 29 N ALA 33 -23.310 -20.482 11.053 1.00 0.00 N ATOM 30 CA ALA 33 -23.578 -19.698 9.859 1.00 0.00 C ATOM 31 C ALA 33 -23.928 -18.246 10.230 1.00 0.00 C ATOM 32 O ALA 33 -23.402 -17.305 9.651 1.00 0.00 O ATOM 33 N TYR 34 -24.740 -18.088 11.248 1.00 0.00 N ATOM 34 CA TYR 34 -25.059 -16.766 11.735 1.00 0.00 C ATOM 35 C TYR 34 -23.850 -16.023 12.266 1.00 0.00 C ATOM 36 O TYR 34 -23.755 -14.785 12.060 1.00 0.00 O ATOM 37 N ARG 35 -22.978 -16.730 12.996 1.00 0.00 N ATOM 38 CA ARG 35 -21.877 -16.055 13.619 1.00 0.00 C ATOM 39 C ARG 35 -20.918 -15.616 12.516 1.00 0.00 C ATOM 40 O ARG 35 -20.379 -14.533 12.618 1.00 0.00 O ATOM 41 N GLN 36 -20.748 -16.397 11.457 1.00 0.00 N ATOM 42 CA GLN 36 -19.822 -16.011 10.390 1.00 0.00 C ATOM 43 C GLN 36 -20.413 -14.860 9.589 1.00 0.00 C ATOM 44 O GLN 36 -19.715 -13.939 9.228 1.00 0.00 O ATOM 45 N ILE 37 -21.717 -14.913 9.350 1.00 0.00 N ATOM 46 CA ILE 37 -22.392 -13.861 8.597 1.00 0.00 C ATOM 47 C ILE 37 -22.310 -12.546 9.391 1.00 0.00 C ATOM 48 O ILE 37 -21.948 -11.465 8.852 1.00 0.00 O ATOM 49 N PHE 38 -22.431 -12.677 10.692 1.00 0.00 N ATOM 50 CA PHE 38 -22.189 -11.560 11.652 1.00 0.00 C ATOM 51 C PHE 38 -20.836 -10.965 11.543 1.00 0.00 C ATOM 52 O PHE 38 -20.644 -9.737 11.512 1.00 0.00 O ATOM 53 N GLU 39 -19.865 -11.830 11.498 1.00 0.00 N ATOM 54 CA GLU 39 -18.453 -11.321 11.346 1.00 0.00 C ATOM 55 C GLU 39 -18.198 -10.585 10.075 1.00 0.00 C ATOM 56 O GLU 39 -17.399 -9.631 10.060 1.00 0.00 O ATOM 57 N ARG 40 -18.938 -10.980 9.041 1.00 0.00 N ATOM 58 CA ARG 40 -18.801 -10.358 7.725 1.00 0.00 C ATOM 59 C ARG 40 -19.481 -8.955 7.653 1.00 0.00 C ATOM 60 O ARG 40 -18.885 -7.981 7.148 1.00 0.00 O ATOM 61 N ILE 42 -20.682 -8.824 8.195 1.00 0.00 N ATOM 62 CA ILE 42 -21.289 -7.508 8.402 1.00 0.00 C ATOM 63 C ILE 42 -20.506 -6.547 9.312 1.00 0.00 C ATOM 64 O ILE 42 -20.384 -5.376 8.948 1.00 0.00 O ATOM 65 N THR 43 -19.955 -7.060 10.434 1.00 0.00 N ATOM 66 CA THR 43 -19.008 -6.308 11.310 1.00 0.00 C ATOM 67 C THR 43 -17.884 -5.587 10.564 1.00 0.00 C ATOM 68 O THR 43 -17.714 -4.419 10.768 1.00 0.00 O ATOM 69 N LYS 44 -17.203 -6.251 9.655 1.00 0.00 N ATOM 70 CA LYS 44 -16.200 -5.559 8.844 1.00 0.00 C ATOM 71 C LYS 44 -16.795 -4.413 8.012 1.00 0.00 C ATOM 72 O LYS 44 -16.159 -3.401 7.798 1.00 0.00 O ATOM 73 N ALA 45 -18.022 -4.566 7.535 1.00 0.00 N ATOM 74 CA ALA 45 -18.686 -3.459 6.862 1.00 0.00 C ATOM 75 C ALA 45 -19.082 -2.269 7.764 1.00 0.00 C ATOM 76 O ALA 45 -19.334 -1.152 7.272 1.00 0.00 O ATOM 77 N TYR 46 -19.095 -2.504 9.087 1.00 0.00 N ATOM 78 CA TYR 46 -19.523 -1.511 10.069 1.00 0.00 C ATOM 79 C TYR 46 -18.390 -0.535 10.432 1.00 0.00 C ATOM 80 O TYR 46 -18.137 -0.243 11.573 1.00 0.00 O ATOM 81 N SER 47 -17.729 -0.004 9.409 1.00 0.00 N ATOM 82 CA SER 47 -16.614 0.913 9.549 1.00 0.00 C ATOM 83 C SER 47 -16.693 1.907 8.411 1.00 0.00 C ATOM 84 O SER 47 -16.655 1.565 7.227 1.00 0.00 O ATOM 85 N GLN 48 -16.862 3.153 8.774 1.00 0.00 N ATOM 86 CA GLN 48 -17.053 4.196 7.760 1.00 0.00 C ATOM 87 C GLN 48 -15.868 4.377 6.777 1.00 0.00 C ATOM 88 O GLN 48 -16.135 4.661 5.604 1.00 0.00 O ATOM 89 N SER 49 -14.638 4.161 7.210 1.00 0.00 N ATOM 90 CA SER 49 -13.474 4.316 6.331 1.00 0.00 C ATOM 91 C SER 49 -13.465 3.197 5.292 1.00 0.00 C ATOM 92 O SER 49 -13.375 3.475 4.099 1.00 0.00 O ATOM 93 N ILE 50 -13.665 1.945 5.723 1.00 0.00 N ATOM 94 CA ILE 50 -13.848 0.882 4.749 1.00 0.00 C ATOM 95 C ILE 50 -14.955 1.175 3.699 1.00 0.00 C ATOM 96 O ILE 50 -14.783 0.971 2.444 1.00 0.00 O ATOM 97 N SER 51 -16.068 1.662 4.196 1.00 0.00 N ATOM 98 CA SER 51 -17.174 1.903 3.345 1.00 0.00 C ATOM 99 C SER 51 -16.851 2.996 2.271 1.00 0.00 C ATOM 100 O SER 51 -17.378 2.987 1.172 1.00 0.00 O ATOM 101 N TYR 52 -15.992 3.926 2.624 1.00 0.00 N ATOM 102 CA TYR 52 -15.540 4.986 1.725 1.00 0.00 C ATOM 103 C TYR 52 -14.733 4.402 0.573 1.00 0.00 C ATOM 104 O TYR 52 -15.001 4.729 -0.596 1.00 0.00 O ATOM 105 N LEU 53 -13.807 3.516 0.885 1.00 0.00 N ATOM 106 CA LEU 53 -13.046 2.810 -0.157 1.00 0.00 C ATOM 107 C LEU 53 -13.941 2.074 -1.074 1.00 0.00 C ATOM 108 O LEU 53 -13.804 2.187 -2.284 1.00 0.00 O ATOM 109 N GLU 54 -14.863 1.292 -0.504 1.00 0.00 N ATOM 110 CA GLU 54 -15.804 0.537 -1.287 1.00 0.00 C ATOM 111 C GLU 54 -16.711 1.387 -2.126 1.00 0.00 C ATOM 112 O GLU 54 -17.172 0.903 -3.174 1.00 0.00 O ATOM 113 N SER 55 -17.051 2.613 -1.678 1.00 0.00 N ATOM 114 CA SER 55 -17.865 3.500 -2.534 1.00 0.00 C ATOM 115 C SER 55 -17.106 3.818 -3.821 1.00 0.00 C ATOM 116 O SER 55 -17.686 4.085 -4.812 1.00 0.00 O ATOM 117 N GLN 56 -15.805 3.875 -3.752 1.00 0.00 N ATOM 118 CA GLN 56 -14.956 4.158 -4.914 1.00 0.00 C ATOM 119 C GLN 56 -14.894 2.906 -5.791 1.00 0.00 C ATOM 120 O GLN 56 -15.330 2.954 -6.929 1.00 0.00 O ATOM 121 N VAL 57 -14.459 1.774 -5.229 1.00 0.00 N ATOM 122 CA VAL 57 -14.457 0.536 -5.975 1.00 0.00 C ATOM 123 C VAL 57 -15.779 0.204 -6.570 1.00 0.00 C ATOM 124 O VAL 57 -15.819 -0.454 -7.566 1.00 0.00 O ATOM 125 N ARG 58 -16.870 0.718 -6.034 1.00 0.00 N ATOM 126 CA ARG 58 -18.203 0.429 -6.620 1.00 0.00 C ATOM 127 C ARG 58 -18.412 0.967 -8.055 1.00 0.00 C ATOM 128 O ARG 58 -19.256 0.454 -8.820 1.00 0.00 O ATOM 129 N ASN 59 -17.711 2.033 -8.385 1.00 0.00 N ATOM 130 CA ASN 59 -17.858 2.673 -9.711 1.00 0.00 C ATOM 131 C ASN 59 -16.803 2.135 -10.691 1.00 0.00 C ATOM 132 O ASN 59 -17.028 2.182 -11.882 1.00 0.00 O ATOM 133 N GLY 60 -15.658 1.644 -10.206 1.00 0.00 N ATOM 134 CA GLY 60 -14.657 1.033 -11.097 1.00 0.00 C ATOM 135 C GLY 60 -13.535 0.367 -10.332 1.00 0.00 C ATOM 136 O GLY 60 -13.315 0.651 -9.179 1.00 0.00 O ATOM 137 N ASP 61 -12.777 -0.486 -10.988 1.00 0.00 N ATOM 138 CA ASP 61 -11.511 -0.908 -10.416 1.00 0.00 C ATOM 139 C ASP 61 -10.536 0.288 -10.440 1.00 0.00 C ATOM 140 O ASP 61 -10.684 1.194 -11.273 1.00 0.00 O ATOM 141 N ILE 62 -9.572 0.306 -9.519 1.00 0.00 N ATOM 142 CA ILE 62 -8.728 1.469 -9.314 1.00 0.00 C ATOM 143 C ILE 62 -7.433 1.010 -8.693 1.00 0.00 C ATOM 144 O ILE 62 -7.431 0.064 -7.911 1.00 0.00 O ATOM 145 N SER 63 -6.347 1.730 -8.954 1.00 0.00 N ATOM 146 CA SER 63 -5.045 1.395 -8.361 1.00 0.00 C ATOM 147 C SER 63 -4.956 1.749 -6.873 1.00 0.00 C ATOM 148 O SER 63 -5.717 2.564 -6.384 1.00 0.00 O ATOM 149 N MET 64 -4.016 1.130 -6.176 1.00 0.00 N ATOM 150 CA MET 64 -3.598 1.528 -4.828 1.00 0.00 C ATOM 151 C MET 64 -3.426 3.042 -4.570 1.00 0.00 C ATOM 152 O MET 64 -3.810 3.530 -3.507 1.00 0.00 O ATOM 153 N LYS 65 -2.842 3.755 -5.525 1.00 0.00 N ATOM 154 CA LYS 65 -2.676 5.215 -5.492 1.00 0.00 C ATOM 155 C LYS 65 -3.837 6.076 -6.026 1.00 0.00 C ATOM 156 O LYS 65 -3.991 7.215 -5.665 1.00 0.00 O ATOM 157 N GLU 66 -4.674 5.550 -6.883 1.00 0.00 N ATOM 158 CA GLU 66 -5.858 6.323 -7.236 1.00 0.00 C ATOM 159 C GLU 66 -6.805 6.429 -6.025 1.00 0.00 C ATOM 160 O GLU 66 -7.429 7.445 -5.859 1.00 0.00 O ATOM 161 N PHE 67 -6.818 5.405 -5.156 1.00 0.00 N ATOM 162 CA PHE 67 -7.740 5.297 -4.012 1.00 0.00 C ATOM 163 C PHE 67 -7.293 6.226 -2.911 1.00 0.00 C ATOM 164 O PHE 67 -8.101 6.903 -2.283 1.00 0.00 O ATOM 165 N VAL 68 -6.000 6.184 -2.643 1.00 0.00 N ATOM 166 CA VAL 68 -5.349 7.110 -1.726 1.00 0.00 C ATOM 167 C VAL 68 -5.593 8.563 -2.145 1.00 0.00 C ATOM 168 O VAL 68 -5.862 9.405 -1.302 1.00 0.00 O ATOM 169 N ARG 69 -5.554 8.860 -3.441 1.00 0.00 N ATOM 170 CA ARG 69 -5.738 10.251 -3.901 1.00 0.00 C ATOM 171 C ARG 69 -7.192 10.716 -3.791 1.00 0.00 C ATOM 172 O ARG 69 -7.430 11.914 -3.683 1.00 0.00 O ATOM 173 N ARG 70 -8.141 9.767 -3.829 1.00 0.00 N ATOM 174 CA ARG 70 -9.580 10.035 -3.572 1.00 0.00 C ATOM 175 C ARG 70 -9.917 10.190 -2.075 1.00 0.00 C ATOM 176 O ARG 70 -10.664 11.071 -1.692 1.00 0.00 O ATOM 177 N LEU 71 -9.355 9.320 -1.253 1.00 0.00 N ATOM 178 CA LEU 71 -9.555 9.322 0.199 1.00 0.00 C ATOM 179 C LEU 71 -8.625 10.395 0.822 1.00 0.00 C ATOM 180 O LEU 71 -8.681 10.679 2.044 1.00 0.00 O ATOM 181 N ALA 72 -7.769 10.967 -0.044 1.00 0.00 N ATOM 182 CA ALA 72 -6.739 11.924 0.319 1.00 0.00 C ATOM 183 C ALA 72 -5.811 11.465 1.434 1.00 0.00 C ATOM 184 O ALA 72 -5.568 12.251 2.353 1.00 0.00 O ATOM 185 N LYS 73 -5.338 10.209 1.384 1.00 0.00 N ATOM 186 CA LYS 73 -4.382 9.652 2.372 1.00 0.00 C ATOM 187 C LYS 73 -3.171 9.014 1.649 1.00 0.00 C ATOM 188 O LYS 73 -2.919 9.295 0.477 1.00 0.00 O ATOM 189 N SER 74 -2.422 8.157 2.344 1.00 0.00 N ATOM 190 CA SER 74 -1.138 7.653 1.846 1.00 0.00 C ATOM 191 C SER 74 -1.208 6.327 1.079 1.00 0.00 C ATOM 192 O SER 74 -2.258 5.712 0.942 1.00 0.00 O ATOM 193 N PRO 75 -0.052 5.893 0.588 1.00 0.00 N ATOM 194 CA PRO 75 0.060 4.639 -0.139 1.00 0.00 C ATOM 195 C PRO 75 0.158 3.510 0.839 1.00 0.00 C ATOM 196 O PRO 75 -0.662 2.609 0.865 1.00 0.00 O ATOM 197 N LEU 76 1.183 3.567 1.668 1.00 0.00 N ATOM 198 CA LEU 76 1.375 2.530 2.672 1.00 0.00 C ATOM 199 C LEU 76 0.179 2.389 3.670 1.00 0.00 C ATOM 200 O LEU 76 0.185 1.479 4.492 1.00 0.00 O ATOM 201 N TYR 77 -0.829 3.271 3.609 1.00 0.00 N ATOM 202 CA TYR 77 -2.020 3.106 4.452 1.00 0.00 C ATOM 203 C TYR 77 -3.297 2.678 3.698 1.00 0.00 C ATOM 204 O TYR 77 -4.167 2.049 4.309 1.00 0.00 O ATOM 205 N ARG 78 -3.453 3.024 2.421 1.00 0.00 N ATOM 206 CA ARG 78 -4.569 2.449 1.655 1.00 0.00 C ATOM 207 C ARG 78 -4.254 0.975 1.531 1.00 0.00 C ATOM 208 O ARG 78 -5.131 0.125 1.674 1.00 0.00 O ATOM 209 N LYS 79 -2.970 0.703 1.295 1.00 0.00 N ATOM 210 CA LYS 79 -2.453 -0.651 1.143 1.00 0.00 C ATOM 211 C LYS 79 -2.364 -1.387 2.474 1.00 0.00 C ATOM 212 O LYS 79 -1.870 -2.502 2.530 1.00 0.00 O ATOM 213 N GLN 80 -2.825 -0.776 3.553 1.00 0.00 N ATOM 214 CA GLN 80 -3.025 -1.495 4.802 1.00 0.00 C ATOM 215 C GLN 80 -4.464 -1.916 4.934 1.00 0.00 C ATOM 216 O GLN 80 -4.758 -2.999 5.439 1.00 0.00 O ATOM 217 N PHE 81 -5.360 -1.044 4.494 1.00 0.00 N ATOM 218 CA PHE 81 -6.789 -1.279 4.668 1.00 0.00 C ATOM 219 C PHE 81 -7.304 -2.235 3.599 1.00 0.00 C ATOM 220 O PHE 81 -8.193 -3.062 3.858 1.00 0.00 O ATOM 221 N PHE 82 -6.741 -2.119 2.403 1.00 0.00 N ATOM 222 CA PHE 82 -7.177 -2.930 1.287 1.00 0.00 C ATOM 223 C PHE 82 -6.749 -4.359 1.539 1.00 0.00 C ATOM 224 O PHE 82 -7.588 -5.275 1.541 1.00 0.00 O ATOM 225 N GLU 83 -5.445 -4.520 1.760 1.00 0.00 N ATOM 226 CA GLU 83 -4.838 -5.764 2.263 1.00 0.00 C ATOM 227 C GLU 83 -5.499 -6.312 3.554 1.00 0.00 C ATOM 228 O GLU 83 -5.216 -7.432 3.983 1.00 0.00 O ATOM 229 N PRO 84 -6.324 -5.510 4.203 1.00 0.00 N ATOM 230 CA PRO 84 -7.206 -6.054 5.194 1.00 0.00 C ATOM 231 C PRO 84 -8.449 -6.614 4.512 1.00 0.00 C ATOM 232 O PRO 84 -8.781 -7.770 4.714 1.00 0.00 O ATOM 233 N PHE 85 -9.092 -5.806 3.663 1.00 0.00 N ATOM 234 CA PHE 85 -10.385 -6.158 3.065 1.00 0.00 C ATOM 235 C PHE 85 -10.301 -7.318 2.094 1.00 0.00 C ATOM 236 O PHE 85 -11.317 -7.870 1.704 1.00 0.00 O ATOM 237 N ILE 86 -9.078 -7.636 1.680 1.00 0.00 N ATOM 238 CA ILE 86 -8.828 -8.694 0.729 1.00 0.00 C ATOM 239 C ILE 86 -9.092 -9.964 1.507 1.00 0.00 C ATOM 240 O ILE 86 -10.005 -10.708 1.159 1.00 0.00 O ATOM 241 N ASN 87 -8.370 -10.176 2.623 1.00 0.00 N ATOM 242 CA ASN 87 -8.545 -11.423 3.413 1.00 0.00 C ATOM 243 C ASN 87 -9.964 -11.589 3.977 1.00 0.00 C ATOM 244 O ASN 87 -10.380 -12.709 4.384 1.00 0.00 O ATOM 245 N SER 88 -10.719 -10.487 3.936 1.00 0.00 N ATOM 246 CA SER 88 -12.129 -10.492 4.393 1.00 0.00 C ATOM 247 C SER 88 -13.132 -10.872 3.280 1.00 0.00 C ATOM 248 O SER 88 -14.253 -11.293 3.540 1.00 0.00 O ATOM 249 N ARG 89 -12.696 -10.733 2.037 1.00 0.00 N ATOM 250 CA ARG 89 -13.413 -11.212 0.849 1.00 0.00 C ATOM 251 C ARG 89 -14.347 -10.176 0.279 1.00 0.00 C ATOM 252 O ARG 89 -15.290 -10.461 -0.417 1.00 0.00 O ATOM 253 N ALA 90 -13.982 -8.927 0.543 1.00 0.00 N ATOM 254 CA ALA 90 -14.730 -7.805 0.072 1.00 0.00 C ATOM 255 C ALA 90 -14.090 -7.260 -1.163 1.00 0.00 C ATOM 256 O ALA 90 -14.776 -6.836 -2.077 1.00 0.00 O ATOM 257 N LEU 91 -12.773 -7.254 -1.168 1.00 0.00 N ATOM 258 CA LEU 91 -12.036 -6.864 -2.349 1.00 0.00 C ATOM 259 C LEU 91 -11.014 -7.866 -2.885 1.00 0.00 C ATOM 260 O LEU 91 -10.463 -8.656 -2.153 1.00 0.00 O ATOM 261 N GLU 92 -10.741 -7.785 -4.183 1.00 0.00 N ATOM 262 CA GLU 92 -9.689 -8.573 -4.786 1.00 0.00 C ATOM 263 C GLU 92 -8.694 -7.653 -5.517 1.00 0.00 C ATOM 264 O GLU 92 -9.037 -6.538 -5.817 1.00 0.00 O ATOM 265 N LEU 93 -7.495 -8.187 -5.832 1.00 0.00 N ATOM 266 CA LEU 93 -6.400 -7.467 -6.535 1.00 0.00 C ATOM 267 C LEU 93 -5.563 -8.269 -7.529 1.00 0.00 C ATOM 268 O LEU 93 -5.352 -9.454 -7.347 1.00 0.00 O ATOM 269 N ARG 101 -5.069 -7.560 -8.549 1.00 0.00 N ATOM 270 CA ARG 101 -4.088 -8.036 -9.554 1.00 0.00 C ATOM 271 C ARG 101 -2.742 -7.310 -9.274 1.00 0.00 C ATOM 272 O ARG 101 -2.645 -6.267 -8.648 1.00 0.00 O ATOM 273 N GLY 102 2.267 -1.328 -9.548 1.00 0.00 N ATOM 274 CA GLY 102 1.014 -1.235 -8.659 1.00 0.00 C ATOM 275 C GLY 102 0.011 -2.334 -8.933 1.00 0.00 C ATOM 276 O GLY 102 -0.115 -2.919 -10.023 1.00 0.00 O ATOM 277 N PRO 103 -0.845 -2.355 -7.945 1.00 0.00 N ATOM 278 CA PRO 103 -1.910 -3.278 -7.769 1.00 0.00 C ATOM 279 C PRO 103 -3.191 -2.605 -8.278 1.00 0.00 C ATOM 280 O PRO 103 -3.298 -1.388 -8.316 1.00 0.00 O ATOM 281 N SER 104 -4.151 -3.409 -8.703 1.00 0.00 N ATOM 282 CA SER 104 -5.468 -2.910 -8.979 1.00 0.00 C ATOM 283 C SER 104 -6.466 -3.613 -8.076 1.00 0.00 C ATOM 284 O SER 104 -6.403 -4.832 -7.870 1.00 0.00 O ATOM 285 N SER 105 -7.372 -2.813 -7.506 1.00 0.00 N ATOM 286 CA SER 105 -8.465 -3.345 -6.716 1.00 0.00 C ATOM 287 C SER 105 -9.807 -3.175 -7.350 1.00 0.00 C ATOM 288 O SER 105 -10.115 -2.167 -8.001 1.00 0.00 O ATOM 289 N ARG 106 -10.608 -4.201 -7.089 1.00 0.00 N ATOM 290 CA ARG 106 -12.038 -4.228 -7.400 1.00 0.00 C ATOM 291 C ARG 106 -12.856 -4.822 -6.229 1.00 0.00 C ATOM 292 O ARG 106 -12.324 -5.497 -5.309 1.00 0.00 O ATOM 293 N GLU 107 -14.166 -4.605 -6.299 1.00 0.00 N ATOM 294 CA GLU 107 -15.116 -5.384 -5.495 1.00 0.00 C ATOM 295 C GLU 107 -14.966 -6.869 -5.936 1.00 0.00 C ATOM 296 O GLU 107 -14.923 -7.145 -7.113 1.00 0.00 O ATOM 297 N GLU 108 -14.840 -7.779 -4.960 1.00 0.00 N ATOM 298 CA GLU 108 -14.521 -9.191 -5.158 1.00 0.00 C ATOM 299 C GLU 108 -15.352 -9.831 -6.281 1.00 0.00 C ATOM 300 O GLU 108 -14.813 -10.499 -7.135 1.00 0.00 O ATOM 301 N VAL 109 -16.662 -9.584 -6.272 1.00 0.00 N ATOM 302 CA VAL 109 -17.599 -10.146 -7.240 1.00 0.00 C ATOM 303 C VAL 109 -18.922 -9.519 -7.111 1.00 0.00 C ATOM 304 O VAL 109 -19.091 -8.624 -6.290 1.00 0.00 O ATOM 305 N GLN 110 -19.833 -9.974 -7.969 1.00 0.00 N ATOM 306 CA GLN 110 -21.213 -9.513 -8.070 1.00 0.00 C ATOM 307 C GLN 110 -21.997 -9.511 -6.686 1.00 0.00 C ATOM 308 O GLN 110 -22.815 -8.641 -6.489 1.00 0.00 O ATOM 309 N LYS 111 -21.688 -10.376 -5.717 1.00 0.00 N ATOM 310 CA LYS 111 -22.395 -10.327 -4.397 1.00 0.00 C ATOM 311 C LYS 111 -22.049 -9.078 -3.641 1.00 0.00 C ATOM 312 O LYS 111 -22.930 -8.376 -3.090 1.00 0.00 O ATOM 313 N TYR 112 -20.745 -8.817 -3.602 1.00 0.00 N ATOM 314 CA TYR 112 -20.275 -7.556 -3.062 1.00 0.00 C ATOM 315 C TYR 112 -20.867 -6.313 -3.730 1.00 0.00 C ATOM 316 O TYR 112 -21.299 -5.358 -3.020 1.00 0.00 O ATOM 317 N PHE 113 -20.932 -6.295 -5.055 1.00 0.00 N ATOM 318 CA PHE 113 -21.479 -5.112 -5.755 1.00 0.00 C ATOM 319 C PHE 113 -22.948 -4.907 -5.303 1.00 0.00 C ATOM 320 O PHE 113 -23.358 -3.779 -4.955 1.00 0.00 O ATOM 321 N SER 114 -23.707 -6.015 -5.300 1.00 0.00 N ATOM 322 CA SER 114 -25.183 -6.030 -5.119 1.00 0.00 C ATOM 323 C SER 114 -25.494 -5.565 -3.697 1.00 0.00 C ATOM 324 O SER 114 -26.361 -4.758 -3.476 1.00 0.00 O ATOM 325 N ILE 115 -24.697 -6.080 -2.780 1.00 0.00 N ATOM 326 CA ILE 115 -24.734 -5.849 -1.348 1.00 0.00 C ATOM 327 C ILE 115 -24.432 -4.373 -1.036 1.00 0.00 C ATOM 328 O ILE 115 -25.164 -3.706 -0.331 1.00 0.00 O ATOM 329 N VAL 116 -23.311 -3.883 -1.522 1.00 0.00 N ATOM 330 CA VAL 116 -23.080 -2.466 -1.371 1.00 0.00 C ATOM 331 C VAL 116 -24.179 -1.529 -1.947 1.00 0.00 C ATOM 332 O VAL 116 -24.557 -0.506 -1.324 1.00 0.00 O ATOM 333 N SER 117 -24.651 -1.808 -3.126 1.00 0.00 N ATOM 334 CA SER 117 -25.638 -0.939 -3.800 1.00 0.00 C ATOM 335 C SER 117 -27.034 -0.948 -3.156 1.00 0.00 C ATOM 336 O SER 117 -27.692 0.091 -2.931 1.00 0.00 O ATOM 337 N ALA 123 -27.471 -2.134 -2.794 1.00 0.00 N ATOM 338 CA ALA 123 -28.760 -2.285 -2.137 1.00 0.00 C ATOM 339 C ALA 123 -28.782 -1.582 -0.779 1.00 0.00 C ATOM 340 O ALA 123 -29.725 -0.852 -0.457 1.00 0.00 O ATOM 341 N LEU 124 -27.690 -1.752 -0.027 1.00 0.00 N ATOM 342 CA LEU 124 -27.563 -1.098 1.234 1.00 0.00 C ATOM 343 C LEU 124 -27.629 0.395 1.089 1.00 0.00 C ATOM 344 O LEU 124 -28.392 1.078 1.785 1.00 0.00 O ATOM 345 N VAL 125 -26.852 0.884 0.183 1.00 0.00 N ATOM 346 CA VAL 125 -26.745 2.335 -0.014 1.00 0.00 C ATOM 347 C VAL 125 -28.016 2.917 -0.673 1.00 0.00 C ATOM 348 O VAL 125 -28.514 3.928 -0.184 1.00 0.00 O ATOM 349 N ASP 126 -28.607 2.238 -1.676 1.00 0.00 N ATOM 350 CA ASP 126 -29.973 2.683 -2.154 1.00 0.00 C ATOM 351 C ASP 126 -31.058 2.644 -1.061 1.00 0.00 C ATOM 352 O ASP 126 -31.804 3.594 -0.888 1.00 0.00 O ATOM 353 N ALA 127 -31.100 1.568 -0.261 1.00 0.00 N ATOM 354 CA ALA 127 -32.138 1.505 0.798 1.00 0.00 C ATOM 355 C ALA 127 -31.958 2.671 1.805 1.00 0.00 C ATOM 356 O ALA 127 -32.915 3.326 2.158 1.00 0.00 O ATOM 357 N LEU 128 -30.728 2.957 2.202 1.00 0.00 N ATOM 358 CA LEU 128 -30.457 4.063 3.151 1.00 0.00 C ATOM 359 C LEU 128 -30.840 5.402 2.555 1.00 0.00 C ATOM 360 O LEU 128 -31.248 6.337 3.237 1.00 0.00 O ATOM 361 N VAL 129 -30.788 5.462 1.251 1.00 0.00 N ATOM 362 CA VAL 129 -31.080 6.702 0.549 1.00 0.00 C ATOM 363 C VAL 129 -32.565 7.027 0.519 1.00 0.00 C ATOM 364 O VAL 129 -32.911 8.136 0.437 1.00 0.00 O ATOM 365 N ASP 130 -33.415 6.017 0.561 1.00 0.00 N ATOM 366 CA ASP 130 -34.872 6.178 0.610 1.00 0.00 C ATOM 367 C ASP 130 -35.239 7.133 1.721 1.00 0.00 C ATOM 368 O ASP 130 -36.191 7.850 1.607 1.00 0.00 O ATOM 369 N SER 131 -34.508 7.078 2.825 1.00 0.00 N ATOM 370 CA SER 131 -34.619 8.060 3.886 1.00 0.00 C ATOM 371 C SER 131 -36.042 8.128 4.513 1.00 0.00 C ATOM 372 O SER 131 -36.951 7.254 4.316 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 372 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 64.25 64.6 178 66.9 266 ARMSMC SECONDARY STRUCTURE . . 54.52 77.4 124 82.7 150 ARMSMC SURFACE . . . . . . . . 68.49 60.5 119 66.1 180 ARMSMC BURIED . . . . . . . . 54.70 72.9 59 68.6 86 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 115 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 107 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 66 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 79 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 91 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 76 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 63 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 40 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.32 (Number of atoms: 93) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.32 93 69.4 134 CRMSCA CRN = ALL/NP . . . . . 0.1647 CRMSCA SECONDARY STRUCTURE . . 15.66 64 85.3 75 CRMSCA SURFACE . . . . . . . . 15.32 62 68.1 91 CRMSCA BURIED . . . . . . . . 15.31 31 72.1 43 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.24 372 56.1 663 CRMSMC SECONDARY STRUCTURE . . 15.62 256 68.3 375 CRMSMC SURFACE . . . . . . . . 15.25 248 55.2 449 CRMSMC BURIED . . . . . . . . 15.22 124 57.9 214 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1637 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1575 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 966 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 1093 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 544 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.24 372 17.1 2173 CRMSALL SECONDARY STRUCTURE . . 15.62 256 20.2 1266 CRMSALL SURFACE . . . . . . . . 15.25 248 17.0 1457 CRMSALL BURIED . . . . . . . . 15.22 124 17.3 716 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.189 1.000 0.500 93 69.4 134 ERRCA SECONDARY STRUCTURE . . 14.761 1.000 0.500 64 85.3 75 ERRCA SURFACE . . . . . . . . 14.059 1.000 0.500 62 68.1 91 ERRCA BURIED . . . . . . . . 14.449 1.000 0.500 31 72.1 43 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.085 1.000 0.500 372 56.1 663 ERRMC SECONDARY STRUCTURE . . 14.677 1.000 0.500 256 68.3 375 ERRMC SURFACE . . . . . . . . 13.992 1.000 0.500 248 55.2 449 ERRMC BURIED . . . . . . . . 14.270 1.000 0.500 124 57.9 214 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1637 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1575 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 966 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 1093 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 544 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.085 1.000 0.500 372 17.1 2173 ERRALL SECONDARY STRUCTURE . . 14.677 1.000 0.500 256 20.2 1266 ERRALL SURFACE . . . . . . . . 13.992 1.000 0.500 248 17.0 1457 ERRALL BURIED . . . . . . . . 14.270 1.000 0.500 124 17.3 716 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 6 24 93 134 DISTCA CA (P) 0.00 0.00 0.00 4.48 17.91 134 DISTCA CA (RMS) 0.00 0.00 0.00 4.37 7.02 DISTCA ALL (N) 0 1 2 25 103 372 2173 DISTALL ALL (P) 0.00 0.05 0.09 1.15 4.74 2173 DISTALL ALL (RMS) 0.00 1.90 2.48 4.19 7.16 DISTALL END of the results output