####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 289), selected 35 , name T0553TS436_1-D1 # Molecule2: number of CA atoms 63 ( 1002), selected 35 , name T0553-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0553TS436_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 35 - 48 4.45 31.63 LCS_AVERAGE: 20.41 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 39 - 45 1.62 33.74 LCS_AVERAGE: 8.39 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 22 - 26 0.99 21.85 LCS_AVERAGE: 5.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 10 I 10 0 6 12 0 0 3 3 4 6 6 7 8 9 9 10 10 11 12 12 13 14 15 16 LCS_GDT K 11 K 11 3 6 12 3 3 4 4 5 6 6 7 8 9 9 10 10 11 12 13 15 17 18 19 LCS_GDT D 12 D 12 4 6 12 3 3 4 4 5 6 6 7 8 9 9 10 10 12 13 15 16 17 18 19 LCS_GDT K 13 K 13 4 6 12 3 3 4 4 5 6 6 7 8 9 9 10 10 11 12 13 15 17 18 19 LCS_GDT A 14 A 14 4 6 12 3 3 4 4 5 6 6 7 8 9 9 10 10 11 12 15 16 17 18 19 LCS_GDT A 15 A 15 4 6 12 3 3 4 4 5 6 6 7 8 9 9 10 10 12 13 15 16 17 18 19 LCS_GDT I 16 I 16 3 3 12 0 2 3 3 3 5 6 7 8 9 9 10 11 12 13 15 16 17 18 19 LCS_GDT K 17 K 17 3 3 12 2 3 3 3 3 5 6 7 8 9 9 10 11 12 13 15 16 17 18 19 LCS_GDT T 18 T 18 3 3 12 0 3 3 3 3 4 4 5 7 9 9 10 11 12 13 15 16 17 18 19 LCS_GDT L 19 L 19 3 3 12 2 3 3 3 3 4 4 5 7 8 9 10 11 12 13 15 16 17 18 19 LCS_GDT I 20 I 20 0 3 12 0 1 3 3 3 4 6 7 7 8 8 10 11 12 13 15 16 17 18 19 LCS_GDT S 21 S 21 4 6 12 0 3 4 5 6 6 6 7 7 8 9 10 11 12 13 15 16 17 18 19 LCS_GDT A 22 A 22 5 6 12 3 3 5 5 6 6 6 7 7 9 9 10 11 12 13 15 16 17 18 19 LCS_GDT A 23 A 23 5 6 12 3 3 5 5 6 6 6 7 8 9 9 11 11 12 13 15 16 17 18 20 LCS_GDT Y 24 Y 24 5 6 12 3 3 5 5 6 6 6 7 7 8 9 10 11 12 13 15 16 17 18 20 LCS_GDT R 25 R 25 5 6 12 3 3 5 5 6 6 7 7 8 9 10 12 14 16 17 17 17 17 18 20 LCS_GDT Q 26 Q 26 5 6 12 3 3 5 5 6 6 7 7 8 9 10 12 14 16 17 17 17 17 18 20 LCS_GDT I 27 I 27 4 6 12 3 4 4 5 5 6 7 7 8 9 10 12 14 16 17 17 17 17 18 20 LCS_GDT F 28 F 28 4 5 12 3 4 4 4 4 5 7 7 8 9 9 12 14 14 17 17 17 17 18 20 LCS_GDT E 29 E 29 4 5 13 3 4 4 4 4 5 7 7 8 9 10 12 14 16 17 17 17 17 18 20 LCS_GDT R 30 R 30 4 5 13 3 4 4 4 4 5 5 5 5 8 9 11 11 12 13 14 15 17 18 20 LCS_GDT Y 35 Y 35 3 4 14 3 3 4 4 4 4 8 11 11 12 12 12 12 12 13 14 14 15 15 15 LCS_GDT I 36 I 36 3 4 14 3 3 4 4 4 5 8 11 11 12 12 12 12 13 13 14 14 15 15 18 LCS_GDT A 37 A 37 3 5 14 3 3 4 5 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT Q 38 Q 38 4 5 14 1 3 4 7 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT N 39 N 39 4 7 14 3 5 5 7 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT E 40 E 40 4 7 14 3 3 5 7 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT F 41 F 41 4 7 14 3 5 5 7 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT S 42 S 42 4 7 14 3 5 5 6 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT G 43 G 43 4 7 14 3 5 5 6 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT W 44 W 44 4 7 14 0 5 5 7 8 9 10 11 11 12 12 12 13 16 17 17 17 17 18 20 LCS_GDT E 45 E 45 3 7 14 1 3 5 7 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT S 46 S 46 3 4 14 3 3 5 7 8 8 10 10 11 12 12 12 14 16 17 17 17 17 18 20 LCS_GDT K 47 K 47 3 3 14 3 3 3 4 6 6 7 7 9 9 12 12 14 16 17 17 17 17 18 20 LCS_GDT L 48 L 48 3 3 14 3 3 3 4 4 5 7 9 11 11 12 12 14 16 17 17 17 17 18 20 LCS_AVERAGE LCS_A: 11.49 ( 5.67 8.39 20.41 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 7 8 9 10 11 11 12 12 12 14 16 17 17 17 17 18 20 GDT PERCENT_AT 4.76 7.94 7.94 11.11 12.70 14.29 15.87 17.46 17.46 19.05 19.05 19.05 22.22 25.40 26.98 26.98 26.98 26.98 28.57 31.75 GDT RMS_LOCAL 0.07 0.62 0.62 1.36 1.59 2.09 2.35 2.99 2.99 3.30 3.30 3.30 4.98 5.22 5.41 5.41 5.41 5.41 5.82 6.62 GDT RMS_ALL_AT 21.69 36.27 36.27 32.62 32.13 32.92 31.89 35.99 35.99 35.11 35.11 35.11 25.69 25.89 25.73 25.73 25.73 25.73 25.25 24.72 # Checking swapping # possible swapping detected: D 12 D 12 # possible swapping detected: Y 24 Y 24 # possible swapping detected: E 29 E 29 # possible swapping detected: E 40 E 40 # possible swapping detected: E 45 E 45 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 10 I 10 73.417 0 0.157 1.517 75.162 0.000 0.000 LGA K 11 K 11 71.367 0 0.705 1.223 76.377 0.000 0.000 LGA D 12 D 12 65.453 0 0.421 1.097 68.959 0.000 0.000 LGA K 13 K 13 63.157 0 0.462 0.919 66.909 0.000 0.000 LGA A 14 A 14 57.598 0 0.599 0.584 59.768 0.000 0.000 LGA A 15 A 15 58.076 0 0.593 0.591 60.506 0.000 0.000 LGA I 16 I 16 55.201 0 0.587 1.668 60.046 0.000 0.000 LGA K 17 K 17 48.707 0 0.645 0.809 51.164 0.000 0.000 LGA T 18 T 18 47.641 0 0.216 0.607 49.984 0.000 0.000 LGA L 19 L 19 46.907 0 0.457 1.447 50.733 0.000 0.000 LGA I 20 I 20 41.041 0 0.561 1.282 42.931 0.000 0.000 LGA S 21 S 21 34.750 0 0.606 0.953 37.101 0.000 0.000 LGA A 22 A 22 34.585 0 0.116 0.181 35.667 0.000 0.000 LGA A 23 A 23 32.475 0 0.508 0.469 33.318 0.000 0.000 LGA Y 24 Y 24 29.116 0 0.079 1.316 29.909 0.000 0.000 LGA R 25 R 25 27.950 0 0.182 0.813 30.659 0.000 0.000 LGA Q 26 Q 26 28.761 0 0.555 1.478 33.327 0.000 0.000 LGA I 27 I 27 24.993 0 0.494 0.704 25.735 0.000 0.000 LGA F 28 F 28 21.840 0 0.461 1.642 26.558 0.000 0.000 LGA E 29 E 29 22.577 0 0.065 1.067 29.286 0.000 0.000 LGA R 30 R 30 18.157 0 0.097 1.285 19.124 0.000 0.000 LGA Y 35 Y 35 4.192 0 0.443 0.718 13.622 37.619 14.921 LGA I 36 I 36 3.701 0 0.477 0.474 6.643 50.357 38.095 LGA A 37 A 37 3.558 0 0.627 0.607 5.091 50.833 45.905 LGA Q 38 Q 38 3.652 0 0.374 1.058 9.118 46.786 31.217 LGA N 39 N 39 1.845 0 0.489 0.603 3.822 65.119 56.786 LGA E 40 E 40 2.653 0 0.064 1.071 3.779 59.167 54.180 LGA F 41 F 41 2.448 0 0.098 0.218 5.475 64.762 44.719 LGA S 42 S 42 2.820 0 0.092 0.608 4.589 59.167 51.905 LGA G 43 G 43 2.639 0 0.129 0.129 2.639 62.976 62.976 LGA W 44 W 44 1.741 0 0.627 1.369 9.492 63.690 29.796 LGA E 45 E 45 2.556 0 0.469 1.263 8.828 55.595 38.466 LGA S 46 S 46 6.561 0 0.385 0.659 9.740 10.952 8.175 LGA K 47 K 47 13.021 0 0.630 1.594 19.459 0.000 0.000 LGA L 48 L 48 12.647 0 0.579 1.240 16.838 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 289 289 100.00 63 SUMMARY(RMSD_GDC): 17.819 18.020 18.309 9.953 7.574 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 63 4.0 11 2.99 15.873 13.863 0.356 LGA_LOCAL RMSD: 2.987 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 35.995 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 17.819 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.093724 * X + -0.819209 * Y + -0.565784 * Z + 75.215080 Y_new = -0.036872 * X + -0.570752 * Y + 0.820294 * Z + 39.834148 Z_new = -0.994915 * X + -0.056020 * Y + -0.083699 * Z + 19.082603 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.374809 1.469909 -2.551766 [DEG: -21.4750 84.2196 -146.2054 ] ZXZ: -2.537791 1.654593 -1.627043 [DEG: -145.4047 94.8012 -93.2227 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0553TS436_1-D1 REMARK 2: T0553-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0553TS436_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 63 4.0 11 2.99 13.863 17.82 REMARK ---------------------------------------------------------- MOLECULE T0553TS436_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0553 REMARK MODEL 1 REFINED REMARK PARENT 3BBN_T ATOM 1 CA ILE 10 32.960 -50.531 33.165 1.00 1.55 C ATOM 2 N ILE 10 33.211 -49.639 34.219 1.00 1.55 N ATOM 5 C ILE 10 31.515 -51.073 33.315 1.00 1.55 C ATOM 6 O ILE 10 31.321 -52.295 33.461 1.00 1.55 O ATOM 7 CB ILE 10 34.114 -51.605 33.083 1.00 1.55 C ATOM 9 CG1 ILE 10 33.949 -52.649 31.917 1.00 1.55 C ATOM 12 CG2 ILE 10 34.333 -52.359 34.439 1.00 1.55 C ATOM 16 CD1 ILE 10 33.697 -52.003 30.523 1.00 1.55 C ATOM 20 CA LYS 11 29.185 -50.583 33.288 1.00 1.55 C ATOM 21 N LYS 11 30.548 -50.198 33.253 1.00 1.55 N ATOM 24 C LYS 11 28.295 -49.418 32.785 1.00 1.55 C ATOM 25 O LYS 11 28.832 -48.379 32.349 1.00 1.55 O ATOM 26 CB LYS 11 28.737 -51.075 34.715 1.00 1.55 C ATOM 29 CG LYS 11 28.652 -49.971 35.824 1.00 1.55 C ATOM 32 CD LYS 11 30.047 -49.549 36.392 1.00 1.55 C ATOM 35 CE LYS 11 29.928 -48.504 37.545 1.00 1.55 C ATOM 38 NZ LYS 11 29.110 -49.051 38.719 1.00 1.55 N ATOM 42 CA ASP 12 26.077 -48.543 32.597 1.00 1.55 C ATOM 43 N ASP 12 27.000 -49.593 32.833 1.00 1.55 N ATOM 46 C ASP 12 26.211 -47.431 33.681 1.00 1.55 C ATOM 47 O ASP 12 27.287 -46.806 33.729 1.00 1.55 O ATOM 48 CB ASP 12 24.634 -49.152 32.490 1.00 1.55 C ATOM 51 CG ASP 12 24.162 -49.909 33.754 1.00 1.55 C ATOM 52 OD1 ASP 12 23.128 -49.531 34.366 1.00 1.55 O ATOM 53 OD2 ASP 12 24.798 -50.914 34.168 1.00 1.55 O ATOM 54 CA LYS 13 25.317 -46.274 35.578 1.00 1.55 C ATOM 55 N LYS 13 25.216 -47.203 34.510 1.00 1.55 N ATOM 58 C LYS 13 25.463 -44.852 34.977 1.00 1.55 C ATOM 59 O LYS 13 26.535 -44.238 35.121 1.00 1.55 O ATOM 60 CB LYS 13 26.423 -46.743 36.599 1.00 1.55 C ATOM 63 CG LYS 13 26.488 -45.959 37.953 1.00 1.55 C ATOM 66 CD LYS 13 27.425 -44.700 37.910 1.00 1.55 C ATOM 69 CE LYS 13 28.164 -44.456 39.261 1.00 1.55 C ATOM 72 NZ LYS 13 29.215 -45.546 39.505 1.00 1.55 N ATOM 76 CA ALA 14 24.472 -43.229 33.496 1.00 1.55 C ATOM 77 N ALA 14 24.424 -44.375 34.331 1.00 1.55 N ATOM 80 C ALA 14 25.381 -43.481 32.263 1.00 1.55 C ATOM 81 O ALA 14 26.601 -43.662 32.452 1.00 1.55 O ATOM 82 CB ALA 14 24.854 -41.922 34.266 1.00 1.55 C ATOM 86 N ALA 15 24.838 -43.490 31.067 1.00 0.93 N ATOM 87 CA ALA 15 25.607 -43.854 29.929 1.00 0.80 C ATOM 88 C ALA 15 24.997 -43.362 28.603 1.00 0.62 C ATOM 89 O ALA 15 23.853 -42.860 28.574 1.00 0.49 O ATOM 90 CB ALA 15 25.836 -45.402 29.894 1.00 0.95 C ATOM 96 N ILE 16 25.791 -43.440 27.572 1.00 0.55 N ATOM 97 CA ILE 16 25.612 -42.610 26.448 1.00 0.30 C ATOM 98 C ILE 16 24.803 -43.313 25.334 1.00 0.98 C ATOM 99 O ILE 16 25.203 -44.404 24.870 1.00 1.72 O ATOM 100 CB ILE 16 27.000 -42.069 25.922 1.00 0.57 C ATOM 104 CG1 ILE 16 28.028 -43.138 25.374 1.00 1.55 C ATOM 107 CG2 ILE 16 27.665 -41.157 27.011 1.00 1.55 C ATOM 111 CD1 ILE 16 28.573 -44.188 26.393 1.00 1.55 C ATOM 115 CA LYS 17 23.678 -42.350 23.486 1.00 1.55 C ATOM 116 N LYS 17 23.775 -42.648 24.872 1.00 1.55 N ATOM 119 C LYS 17 22.799 -43.323 22.677 1.00 1.55 C ATOM 120 O LYS 17 22.802 -44.539 22.962 1.00 1.55 O ATOM 121 CB LYS 17 25.053 -42.168 22.709 1.00 1.55 C ATOM 124 CG LYS 17 25.325 -40.690 22.308 1.00 1.55 C ATOM 127 CD LYS 17 26.686 -40.588 21.553 1.00 1.55 C ATOM 130 CE LYS 17 26.950 -39.135 21.072 1.00 1.55 C ATOM 133 NZ LYS 17 28.284 -39.081 20.328 1.00 1.55 N ATOM 137 N THR 18 22.193 -42.816 21.627 1.00 4.54 N ATOM 138 CA THR 18 22.546 -43.334 20.358 1.00 4.98 C ATOM 139 C THR 18 22.726 -42.135 19.342 1.00 5.40 C ATOM 140 O THR 18 23.908 -41.837 19.089 1.00 5.69 O ATOM 141 CB THR 18 21.657 -44.559 19.917 1.00 5.50 C ATOM 145 OG1 THR 18 20.418 -44.685 20.765 1.00 1.55 O ATOM 147 CG2 THR 18 22.435 -45.920 19.962 1.00 1.55 C ATOM 151 N LEU 19 21.715 -41.453 18.802 1.00 3.03 N ATOM 152 CA LEU 19 21.963 -40.263 18.013 1.00 2.57 C ATOM 153 C LEU 19 20.754 -39.209 17.857 1.00 2.77 C ATOM 154 O LEU 19 20.089 -39.014 18.892 1.00 3.90 O ATOM 155 CB LEU 19 22.820 -40.540 16.708 1.00 2.06 C ATOM 156 CG LEU 19 22.410 -41.686 15.715 1.00 2.15 C ATOM 157 CD1 LEU 19 20.942 -41.551 15.211 1.00 2.41 C ATOM 162 CD2 LEU 19 22.684 -43.126 16.250 1.00 1.55 C ATOM 170 N ILE 20 20.529 -38.486 16.736 1.00 1.47 N ATOM 171 CA ILE 20 20.061 -37.096 16.771 1.00 1.50 C ATOM 172 C ILE 20 18.865 -36.596 15.829 1.00 2.13 C ATOM 173 O ILE 20 18.508 -37.317 14.881 1.00 2.42 O ATOM 174 CB ILE 20 21.247 -36.070 16.427 1.00 0.62 C ATOM 178 CG1 ILE 20 22.640 -36.709 16.060 1.00 1.55 C ATOM 181 CG2 ILE 20 21.457 -35.085 17.623 1.00 1.55 C ATOM 185 CD1 ILE 20 22.693 -37.301 14.613 1.00 1.55 C ATOM 189 N SER 21 18.328 -35.385 16.071 1.00 2.92 N ATOM 190 CA SER 21 17.766 -34.487 15.074 1.00 2.69 C ATOM 191 C SER 21 17.478 -33.043 15.648 1.00 2.81 C ATOM 192 O SER 21 17.528 -32.877 16.882 1.00 3.85 O ATOM 193 CB SER 21 16.385 -34.897 14.422 1.00 2.26 C ATOM 194 OG SER 21 15.297 -34.941 15.462 1.00 2.16 O ATOM 200 N ALA 22 17.161 -32.067 14.804 1.00 2.59 N ATOM 201 CA ALA 22 16.268 -30.998 15.155 1.00 2.76 C ATOM 202 C ALA 22 15.881 -30.087 13.969 1.00 2.37 C ATOM 203 O ALA 22 14.791 -29.475 14.063 1.00 2.75 O ATOM 204 CB ALA 22 16.770 -29.952 16.198 1.00 2.65 C ATOM 210 N ALA 23 16.730 -29.875 12.989 1.00 1.53 N ATOM 211 CA ALA 23 16.403 -28.988 11.930 1.00 1.00 C ATOM 212 C ALA 23 15.260 -29.596 11.073 1.00 0.97 C ATOM 213 O ALA 23 15.496 -30.114 9.963 1.00 2.03 O ATOM 214 CB ALA 23 17.617 -28.625 11.026 1.00 0.34 C ATOM 220 N TYR 24 14.088 -29.531 11.616 1.00 0.27 N ATOM 221 CA TYR 24 12.959 -30.252 11.200 1.00 0.26 C ATOM 222 C TYR 24 11.817 -29.192 11.266 1.00 0.23 C ATOM 223 O TYR 24 11.075 -29.031 10.280 1.00 0.41 O ATOM 224 CB TYR 24 12.854 -31.473 12.205 1.00 0.27 C ATOM 225 CG TYR 24 11.644 -32.353 11.907 1.00 0.23 C ATOM 230 CD1 TYR 24 11.815 -33.660 11.413 1.00 1.55 C ATOM 231 CD2 TYR 24 10.342 -31.875 12.137 1.00 1.55 C ATOM 234 CE1 TYR 24 10.700 -34.466 11.146 1.00 1.55 C ATOM 235 CE2 TYR 24 9.229 -32.680 11.870 1.00 1.55 C ATOM 238 CZ TYR 24 9.407 -33.976 11.373 1.00 1.55 C ATOM 239 OH TYR 24 8.368 -34.726 11.122 1.00 1.55 H ATOM 241 N ARG 25 11.734 -28.484 12.363 1.00 0.12 N ATOM 242 CA ARG 25 10.716 -27.527 12.630 1.00 0.07 C ATOM 243 C ARG 25 11.011 -26.094 12.111 1.00 0.50 C ATOM 244 O ARG 25 10.119 -25.504 11.465 1.00 0.09 O ATOM 245 CB ARG 25 10.756 -27.408 14.201 1.00 0.47 C ATOM 246 CG ARG 25 10.349 -28.688 15.012 1.00 0.70 C ATOM 247 CD ARG 25 8.862 -28.653 15.482 1.00 0.72 C ATOM 248 NE ARG 25 8.003 -28.585 14.368 1.00 0.30 N ATOM 249 CZ ARG 25 6.782 -29.251 14.282 1.00 0.28 C ATOM 250 NH1 ARG 25 6.258 -29.896 15.298 1.00 0.54 H ATOM 251 NH2 ARG 25 6.133 -29.217 13.146 1.00 0.18 H ATOM 265 CA GLN 26 12.018 -24.349 13.297 1.00 1.55 C ATOM 266 N GLN 26 12.129 -25.514 12.492 1.00 1.55 N ATOM 269 C GLN 26 11.833 -23.006 12.550 1.00 1.55 C ATOM 270 O GLN 26 12.509 -22.771 11.521 1.00 1.55 O ATOM 271 CB GLN 26 13.255 -24.238 14.259 1.00 1.55 C ATOM 274 CG GLN 26 14.622 -23.973 13.544 1.00 1.55 C ATOM 277 CD GLN 26 15.721 -23.636 14.571 1.00 1.55 C ATOM 278 OE1 GLN 26 16.276 -22.564 14.534 1.00 1.55 O ATOM 279 NE2 GLN 26 16.077 -24.556 15.542 1.00 1.55 N ATOM 282 CA ILE 27 11.715 -20.965 13.679 1.00 1.55 C ATOM 283 N ILE 27 11.067 -22.114 13.144 1.00 1.55 N ATOM 286 C ILE 27 11.145 -20.652 15.098 1.00 1.55 C ATOM 287 O ILE 27 10.130 -21.264 15.499 1.00 1.55 O ATOM 288 CB ILE 27 11.675 -19.752 12.662 1.00 1.55 C ATOM 290 CG1 ILE 27 13.090 -19.072 12.570 1.00 1.55 C ATOM 293 CG2 ILE 27 10.552 -18.713 13.001 1.00 1.55 C ATOM 297 CD1 ILE 27 13.184 -17.961 11.481 1.00 1.55 C ATOM 301 CA PHE 28 11.506 -19.649 17.220 1.00 1.55 C ATOM 302 N PHE 28 11.785 -19.784 15.836 1.00 1.55 N ATOM 305 C PHE 28 10.140 -18.956 17.473 1.00 1.55 C ATOM 306 O PHE 28 10.139 -17.755 17.814 1.00 1.55 O ATOM 307 CB PHE 28 12.695 -18.885 17.918 1.00 1.55 C ATOM 310 CG PHE 28 12.733 -19.109 19.434 1.00 1.55 C ATOM 311 CD1 PHE 28 11.870 -18.413 20.302 1.00 1.55 C ATOM 312 CD2 PHE 28 13.652 -20.023 19.982 1.00 1.55 C ATOM 313 CE1 PHE 28 11.901 -18.650 21.681 1.00 1.55 C ATOM 314 CE2 PHE 28 13.693 -20.248 21.364 1.00 1.55 C ATOM 315 CZ PHE 28 12.812 -19.569 22.213 1.00 1.55 C ATOM 321 CA GLU 29 8.048 -19.671 18.382 1.00 1.55 C ATOM 322 N GLU 29 9.050 -19.679 17.368 1.00 1.55 N ATOM 325 C GLU 29 7.295 -18.339 18.704 1.00 1.55 C ATOM 326 O GLU 29 6.056 -18.313 18.555 1.00 1.55 O ATOM 327 CB GLU 29 8.625 -20.288 19.707 1.00 1.55 C ATOM 330 CG GLU 29 7.501 -20.752 20.687 1.00 1.55 C ATOM 333 CD GLU 29 8.107 -21.346 21.972 1.00 1.55 C ATOM 334 OE1 GLU 29 7.893 -22.550 22.274 1.00 1.55 O ATOM 335 OE2 GLU 29 8.814 -20.628 22.726 1.00 1.55 O ATOM 336 CA ARG 30 7.395 -16.203 19.801 1.00 1.55 C ATOM 337 N ARG 30 7.977 -17.319 19.162 1.00 1.55 N ATOM 340 C ARG 30 7.486 -15.006 18.837 1.00 1.55 C ATOM 341 O ARG 30 8.579 -14.610 18.424 1.00 1.55 O ATOM 342 CB ARG 30 8.215 -15.961 21.117 1.00 1.55 C ATOM 345 CG ARG 30 7.898 -14.610 21.838 1.00 1.55 C ATOM 348 CD ARG 30 8.811 -14.425 23.091 1.00 1.55 C ATOM 351 NE ARG 30 8.690 -13.115 23.597 1.00 1.55 N ATOM 353 CZ ARG 30 9.471 -12.640 24.651 1.00 1.55 C ATOM 354 NH1 ARG 30 10.276 -13.427 25.327 1.00 1.55 H ATOM 355 NH2 ARG 30 9.402 -11.372 24.971 1.00 1.55 H ATOM 360 CA TYR 35 10.001 -13.437 -2.662 1.00 1.55 C ATOM 361 N TYR 35 9.722 -14.774 -2.325 1.00 1.55 N ATOM 364 C TYR 35 9.540 -12.551 -1.481 1.00 1.55 C ATOM 365 O TYR 35 8.674 -11.673 -1.663 1.00 1.55 O ATOM 366 CB TYR 35 9.374 -13.037 -4.050 1.00 1.55 C ATOM 369 CG TYR 35 9.376 -14.167 -5.079 1.00 1.55 C ATOM 370 CD1 TYR 35 8.218 -14.427 -5.831 1.00 1.55 C ATOM 371 CD2 TYR 35 10.518 -14.962 -5.285 1.00 1.55 C ATOM 374 CE1 TYR 35 8.191 -15.480 -6.753 1.00 1.55 C ATOM 375 CE2 TYR 35 10.488 -16.021 -6.200 1.00 1.55 C ATOM 378 CZ TYR 35 9.324 -16.281 -6.935 1.00 1.55 C ATOM 379 OH TYR 35 9.298 -17.263 -7.794 1.00 1.55 H ATOM 381 CA ILE 36 9.524 -12.367 0.900 1.00 1.55 C ATOM 382 N ILE 36 10.099 -12.793 -0.323 1.00 1.55 N ATOM 385 C ILE 36 8.181 -13.152 1.085 1.00 1.55 C ATOM 386 O ILE 36 7.123 -12.528 1.275 1.00 1.55 O ATOM 387 CB ILE 36 9.606 -10.773 1.052 1.00 1.55 C ATOM 389 CG1 ILE 36 10.817 -10.388 1.983 1.00 1.55 C ATOM 392 CG2 ILE 36 8.290 -10.070 1.528 1.00 1.55 C ATOM 396 CD1 ILE 36 11.138 -8.860 2.035 1.00 1.55 C ATOM 400 CA ALA 37 7.153 -15.374 1.198 1.00 1.55 C ATOM 401 N ALA 37 8.245 -14.468 1.023 1.00 1.55 N ATOM 404 C ALA 37 6.877 -16.179 -0.106 1.00 1.55 C ATOM 405 O ALA 37 7.538 -15.924 -1.135 1.00 1.55 O ATOM 406 CB ALA 37 5.812 -14.808 1.782 1.00 1.55 C ATOM 410 CA GLN 38 5.983 -18.205 -0.966 1.00 1.55 C ATOM 411 N GLN 38 5.960 -17.114 -0.063 1.00 1.55 N ATOM 414 C GLN 38 4.539 -18.685 -1.299 1.00 1.55 C ATOM 415 O GLN 38 4.243 -19.874 -1.067 1.00 1.55 O ATOM 416 CB GLN 38 6.860 -19.339 -0.317 1.00 1.55 C ATOM 419 CG GLN 38 6.451 -19.666 1.163 1.00 1.55 C ATOM 422 CD GLN 38 7.238 -20.836 1.786 1.00 1.55 C ATOM 423 OE1 GLN 38 8.078 -21.429 1.150 1.00 1.55 O ATOM 424 NE2 GLN 38 6.977 -21.206 3.094 1.00 1.55 N ATOM 427 CA ASN 39 2.346 -18.194 -2.131 1.00 1.55 C ATOM 428 N ASN 39 3.699 -17.836 -1.847 1.00 1.55 N ATOM 431 C ASN 39 1.809 -17.187 -3.196 1.00 1.55 C ATOM 432 O ASN 39 2.471 -17.066 -4.256 1.00 1.55 O ATOM 433 CB ASN 39 1.481 -18.202 -0.814 1.00 1.55 C ATOM 436 CG ASN 39 1.838 -19.326 0.179 1.00 1.55 C ATOM 437 OD1 ASN 39 1.635 -20.481 -0.114 1.00 1.55 O ATOM 438 ND2 ASN 39 2.396 -19.018 1.410 1.00 1.55 N ATOM 441 N GLU 40 0.696 -16.514 -2.963 1.00 0.48 N ATOM 442 CA GLU 40 0.657 -15.092 -3.028 1.00 0.16 C ATOM 443 C GLU 40 1.205 -14.340 -4.266 1.00 0.29 C ATOM 444 O GLU 40 0.421 -13.561 -4.852 1.00 0.73 O ATOM 445 CB GLU 40 1.289 -14.577 -1.688 1.00 0.12 C ATOM 446 CG GLU 40 1.146 -13.033 -1.495 1.00 0.23 C ATOM 447 CD GLU 40 1.747 -12.538 -0.161 1.00 0.77 C ATOM 454 OE1 GLU 40 2.296 -13.343 0.637 1.00 1.55 O ATOM 455 OE2 GLU 40 1.688 -11.315 0.130 1.00 1.55 O ATOM 456 CA PHE 41 2.987 -13.773 -5.707 1.00 1.55 C ATOM 457 N PHE 41 2.430 -14.541 -4.669 1.00 1.55 N ATOM 460 C PHE 41 2.622 -14.304 -7.116 1.00 1.55 C ATOM 461 O PHE 41 3.066 -13.684 -8.106 1.00 1.55 O ATOM 462 CB PHE 41 4.520 -13.674 -5.435 1.00 1.55 C ATOM 465 CG PHE 41 4.816 -13.067 -4.058 1.00 1.55 C ATOM 466 CD1 PHE 41 4.211 -11.861 -3.651 1.00 1.55 C ATOM 467 CD2 PHE 41 5.692 -13.714 -3.168 1.00 1.55 C ATOM 468 CE1 PHE 41 4.481 -11.309 -2.394 1.00 1.55 C ATOM 469 CE2 PHE 41 5.966 -13.153 -1.914 1.00 1.55 C ATOM 470 CZ PHE 41 5.361 -11.955 -1.526 1.00 1.55 C ATOM 476 N SER 42 1.810 -15.327 -7.204 1.00 0.29 N ATOM 477 CA SER 42 0.877 -15.427 -8.269 1.00 0.16 C ATOM 478 C SER 42 -0.202 -14.305 -8.274 1.00 0.11 C ATOM 479 O SER 42 -0.449 -13.744 -9.356 1.00 0.16 O ATOM 480 CB SER 42 0.136 -16.789 -8.151 1.00 0.22 C ATOM 485 OG SER 42 -0.835 -16.969 -9.289 1.00 1.55 O ATOM 487 N GLY 43 -0.817 -13.994 -7.155 1.00 0.03 N ATOM 488 CA GLY 43 -1.745 -12.931 -7.052 1.00 0.16 C ATOM 489 C GLY 43 -1.054 -11.623 -7.492 1.00 0.56 C ATOM 490 O GLY 43 -1.650 -10.929 -8.335 1.00 1.42 O ATOM 494 CA TRP 44 1.200 -10.929 -7.889 1.00 1.55 C ATOM 495 N TRP 44 0.145 -11.338 -7.004 1.00 1.55 N ATOM 498 C TRP 44 2.516 -10.512 -7.146 1.00 1.55 C ATOM 499 O TRP 44 2.463 -9.585 -6.316 1.00 1.55 O ATOM 500 CB TRP 44 0.871 -9.733 -8.864 1.00 1.55 C ATOM 503 CG TRP 44 2.003 -9.514 -9.847 1.00 1.55 C ATOM 504 CD1 TRP 44 2.305 -10.331 -10.936 1.00 1.55 C ATOM 505 CD2 TRP 44 2.938 -8.493 -9.859 1.00 1.55 C ATOM 506 NE1 TRP 44 3.371 -9.813 -11.588 1.00 1.55 N ATOM 507 CE2 TRP 44 3.766 -8.701 -10.943 1.00 1.55 C ATOM 508 CE3 TRP 44 3.119 -7.406 -8.997 1.00 1.55 C ATOM 509 CZ2 TRP 44 4.823 -7.839 -11.231 1.00 1.55 C ATOM 510 CZ3 TRP 44 4.178 -6.521 -9.271 1.00 1.55 C ATOM 511 CH2 TRP 44 5.024 -6.736 -10.381 1.00 1.55 H ATOM 518 CA GLU 45 4.869 -10.350 -7.558 1.00 1.55 C ATOM 519 N GLU 45 3.645 -11.085 -7.511 1.00 1.55 N ATOM 522 C GLU 45 5.768 -10.968 -8.670 1.00 1.55 C ATOM 523 O GLU 45 5.251 -11.111 -9.795 1.00 1.55 O ATOM 524 CB GLU 45 5.583 -10.157 -6.170 1.00 1.55 C ATOM 527 CG GLU 45 6.654 -9.016 -6.182 1.00 1.55 C ATOM 530 CD GLU 45 7.317 -8.885 -4.796 1.00 1.55 C ATOM 531 OE1 GLU 45 7.211 -7.814 -4.143 1.00 1.55 O ATOM 532 OE2 GLU 45 7.971 -9.849 -4.316 1.00 1.55 O ATOM 533 CA SER 46 7.959 -11.280 -9.508 1.00 1.55 C ATOM 534 N SER 46 7.028 -11.267 -8.434 1.00 1.55 N ATOM 537 C SER 46 9.178 -12.188 -9.183 1.00 1.55 C ATOM 538 O SER 46 8.968 -13.409 -9.048 1.00 1.55 O ATOM 539 CB SER 46 8.354 -9.803 -9.858 1.00 1.55 C ATOM 542 OG SER 46 9.216 -9.766 -11.093 1.00 1.55 O ATOM 544 CA LYS 47 11.588 -12.362 -9.158 1.00 1.55 C ATOM 545 N LYS 47 10.367 -11.641 -9.075 1.00 1.55 N ATOM 548 C LYS 47 11.825 -12.878 -10.600 1.00 1.55 C ATOM 549 O LYS 47 11.010 -13.682 -11.090 1.00 1.55 O ATOM 550 CB LYS 47 11.752 -13.490 -8.079 1.00 1.55 C ATOM 553 CG LYS 47 13.223 -14.023 -7.934 1.00 1.55 C ATOM 556 CD LYS 47 13.573 -15.175 -8.933 1.00 1.55 C ATOM 559 CE LYS 47 15.078 -15.569 -8.841 1.00 1.55 C ATOM 562 NZ LYS 47 15.409 -16.622 -9.901 1.00 1.55 N ATOM 566 CA LEU 48 13.377 -12.857 -12.487 1.00 1.55 C ATOM 567 N LEU 48 12.896 -12.433 -11.214 1.00 1.55 N ATOM 570 C LEU 48 12.637 -14.040 -13.162 1.00 1.55 C ATOM 571 O LEU 48 12.675 -15.169 -12.670 1.00 1.55 O ATOM 572 CB LEU 48 14.902 -13.223 -12.366 1.00 1.55 C ATOM 575 CG LEU 48 15.892 -12.000 -12.380 1.00 1.55 C ATOM 576 CD1 LEU 48 17.363 -12.522 -12.274 1.00 1.55 C ATOM 577 CD2 LEU 48 15.627 -10.962 -11.244 1.00 1.55 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 289 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 101.23 24.2 66 53.2 124 ARMSMC SECONDARY STRUCTURE . . 106.32 18.5 54 65.9 82 ARMSMC SURFACE . . . . . . . . 103.56 24.4 45 50.0 90 ARMSMC BURIED . . . . . . . . 96.02 23.8 21 61.8 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.75 20.7 29 58.0 50 ARMSSC1 RELIABLE SIDE CHAINS . 92.75 20.7 29 61.7 47 ARMSSC1 SECONDARY STRUCTURE . . 90.34 18.2 22 68.8 32 ARMSSC1 SURFACE . . . . . . . . 91.88 23.8 21 53.8 39 ARMSSC1 BURIED . . . . . . . . 95.00 12.5 8 72.7 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.54 40.0 25 61.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 85.72 45.5 22 61.1 36 ARMSSC2 SECONDARY STRUCTURE . . 86.34 33.3 18 66.7 27 ARMSSC2 SURFACE . . . . . . . . 91.96 41.2 17 56.7 30 ARMSSC2 BURIED . . . . . . . . 73.73 37.5 8 72.7 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.52 45.5 11 64.7 17 ARMSSC3 RELIABLE SIDE CHAINS . 66.72 55.6 9 60.0 15 ARMSSC3 SECONDARY STRUCTURE . . 82.16 37.5 8 72.7 11 ARMSSC3 SURFACE . . . . . . . . 83.37 50.0 10 62.5 16 ARMSSC3 BURIED . . . . . . . . 42.60 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.03 66.7 6 66.7 9 ARMSSC4 RELIABLE SIDE CHAINS . 71.03 66.7 6 66.7 9 ARMSSC4 SECONDARY STRUCTURE . . 3.54 100.0 4 80.0 5 ARMSSC4 SURFACE . . . . . . . . 71.03 66.7 6 66.7 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 17.82 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 17.82 35 55.6 63 CRMSCA CRN = ALL/NP . . . . . 0.5091 CRMSCA SECONDARY STRUCTURE . . 17.51 28 68.3 41 CRMSCA SURFACE . . . . . . . . 18.82 24 52.2 46 CRMSCA BURIED . . . . . . . . 15.40 11 64.7 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 17.98 174 56.3 309 CRMSMC SECONDARY STRUCTURE . . 17.61 139 69.2 201 CRMSMC SURFACE . . . . . . . . 18.94 119 52.7 226 CRMSMC BURIED . . . . . . . . 15.70 55 66.3 83 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 18.60 149 19.9 750 CRMSSC RELIABLE SIDE CHAINS . 18.82 139 19.0 730 CRMSSC SECONDARY STRUCTURE . . 18.43 110 22.7 484 CRMSSC SURFACE . . . . . . . . 19.52 103 18.6 554 CRMSSC BURIED . . . . . . . . 16.34 46 23.5 196 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 18.33 289 28.8 1002 CRMSALL SECONDARY STRUCTURE . . 18.05 222 34.3 648 CRMSALL SURFACE . . . . . . . . 19.26 199 27.0 738 CRMSALL BURIED . . . . . . . . 16.08 90 34.1 264 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.603 0.782 0.391 35 55.6 63 ERRCA SECONDARY STRUCTURE . . 14.773 0.813 0.406 28 68.3 41 ERRCA SURFACE . . . . . . . . 15.612 0.792 0.396 24 52.2 46 ERRCA BURIED . . . . . . . . 12.402 0.761 0.380 11 64.7 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.670 0.775 0.388 174 56.3 309 ERRMC SECONDARY STRUCTURE . . 14.765 0.804 0.402 139 69.2 201 ERRMC SURFACE . . . . . . . . 15.639 0.787 0.394 119 52.7 226 ERRMC BURIED . . . . . . . . 12.575 0.750 0.375 55 66.3 83 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 15.065 0.797 0.398 149 19.9 750 ERRSC RELIABLE SIDE CHAINS . 15.295 0.801 0.400 139 19.0 730 ERRSC SECONDARY STRUCTURE . . 15.181 0.809 0.405 110 22.7 484 ERRSC SURFACE . . . . . . . . 15.739 0.799 0.399 103 18.6 554 ERRSC BURIED . . . . . . . . 13.554 0.792 0.396 46 23.5 196 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.906 0.785 0.393 289 28.8 1002 ERRALL SECONDARY STRUCTURE . . 15.025 0.806 0.403 222 34.3 648 ERRALL SURFACE . . . . . . . . 15.727 0.793 0.397 199 27.0 738 ERRALL BURIED . . . . . . . . 13.089 0.768 0.384 90 34.1 264 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 9 35 63 DISTCA CA (P) 0.00 0.00 0.00 4.76 14.29 63 DISTCA CA (RMS) 0.00 0.00 0.00 3.41 6.94 DISTCA ALL (N) 1 2 4 14 74 289 1002 DISTALL ALL (P) 0.10 0.20 0.40 1.40 7.39 1002 DISTALL ALL (RMS) 0.97 1.27 2.09 3.42 7.22 DISTALL END of the results output