####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 173), selected 22 , name T0553TS420_1-D1 # Molecule2: number of CA atoms 63 ( 1002), selected 22 , name T0553-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0553TS420_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 44 - 65 3.88 3.88 LCS_AVERAGE: 34.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 51 - 63 1.83 4.80 LCS_AVERAGE: 17.82 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 54 - 63 0.49 5.42 LCS_AVERAGE: 11.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT W 44 W 44 5 10 22 5 5 8 10 12 14 16 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT E 45 E 45 5 10 22 5 5 5 9 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT S 46 S 46 5 10 22 5 5 5 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT K 47 K 47 5 10 22 5 5 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT L 48 L 48 5 10 22 5 5 5 5 7 9 10 10 13 18 20 21 21 21 21 21 21 21 22 22 LCS_GDT G 49 G 49 5 10 22 4 4 5 9 9 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT N 50 N 50 5 10 22 4 4 5 9 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT G 51 G 51 5 13 22 4 4 5 9 13 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT E 52 E 52 5 13 22 4 4 5 10 12 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT I 53 I 53 8 13 22 3 4 5 10 12 14 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT T 54 T 54 10 13 22 3 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT V 55 V 55 10 13 22 7 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT K 56 K 56 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT E 57 E 57 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT F 58 F 58 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT I 59 I 59 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT E 60 E 60 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT G 61 G 61 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT L 62 L 62 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT G 63 G 63 10 13 22 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT Y 64 Y 64 3 4 22 3 3 3 4 4 4 12 16 20 20 20 21 21 21 21 21 21 21 22 22 LCS_GDT S 65 S 65 3 4 22 0 3 3 4 4 4 5 6 8 8 8 10 15 15 16 20 20 20 22 22 LCS_AVERAGE LCS_A: 21.40 ( 11.47 17.82 34.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 10 11 14 15 18 19 20 20 20 21 21 21 21 21 21 21 22 22 GDT PERCENT_AT 12.70 15.87 15.87 17.46 22.22 23.81 28.57 30.16 31.75 31.75 31.75 33.33 33.33 33.33 33.33 33.33 33.33 33.33 34.92 34.92 GDT RMS_LOCAL 0.25 0.49 0.49 0.93 1.63 1.82 2.33 2.50 2.89 2.89 2.80 3.13 3.13 3.13 3.13 3.13 3.13 3.13 3.88 3.88 GDT RMS_ALL_AT 5.85 5.42 5.42 4.59 4.31 4.26 4.22 4.20 3.99 3.99 4.19 3.99 3.99 3.99 3.99 3.99 3.99 3.99 3.88 3.88 # Checking swapping # possible swapping detected: E 45 E 45 # possible swapping detected: E 52 E 52 # possible swapping detected: Y 64 Y 64 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA W 44 W 44 4.282 0 0.058 1.152 10.268 43.690 20.170 LGA E 45 E 45 2.237 0 0.078 0.998 6.128 61.429 47.302 LGA S 46 S 46 2.970 0 0.101 0.625 3.954 61.190 57.540 LGA K 47 K 47 1.552 0 0.515 0.524 4.849 64.167 55.185 LGA L 48 L 48 6.372 0 0.099 1.214 12.066 22.976 11.845 LGA G 49 G 49 3.910 0 0.466 0.466 4.903 38.810 38.810 LGA N 50 N 50 2.835 0 0.159 0.175 5.554 60.952 46.607 LGA G 51 G 51 2.659 0 0.304 0.304 3.277 59.286 59.286 LGA E 52 E 52 3.702 0 0.649 1.335 7.192 50.119 34.868 LGA I 53 I 53 3.487 0 0.120 1.113 7.336 57.738 38.333 LGA T 54 T 54 0.718 0 0.204 0.296 3.207 88.214 74.966 LGA V 55 V 55 1.182 0 0.056 1.136 4.618 83.690 70.884 LGA K 56 K 56 1.658 0 0.072 0.728 4.177 77.143 61.058 LGA E 57 E 57 1.595 0 0.062 0.893 7.175 77.143 50.847 LGA F 58 F 58 1.764 0 0.049 0.241 4.170 75.000 58.139 LGA I 59 I 59 1.784 0 0.060 1.435 6.388 79.286 63.333 LGA E 60 E 60 1.303 0 0.044 0.568 5.190 81.429 60.899 LGA G 61 G 61 1.684 0 0.092 0.092 2.096 72.976 72.976 LGA L 62 L 62 2.463 0 0.067 1.479 7.075 64.881 46.786 LGA G 63 G 63 2.026 0 0.226 0.226 3.949 57.738 57.738 LGA Y 64 Y 64 7.621 0 0.700 0.943 12.974 10.000 3.730 LGA S 65 S 65 13.024 0 0.222 0.805 15.941 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 173 173 100.00 63 SUMMARY(RMSD_GDC): 3.878 3.730 5.155 20.442 16.370 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 63 4.0 19 2.50 24.206 23.705 0.730 LGA_LOCAL RMSD: 2.503 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.196 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 3.878 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.475741 * X + 0.310937 * Y + 0.822793 * Z + 21.549410 Y_new = -0.559691 * X + 0.614609 * Y + -0.555879 * Z + -1.354431 Z_new = -0.678539 * X + -0.724965 * Y + -0.118367 * Z + 2.653582 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.275294 0.745772 -1.732640 [DEG: -130.3648 42.7296 -99.2730 ] ZXZ: 0.976635 1.689441 -2.389261 [DEG: 55.9571 96.7978 -136.8945 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0553TS420_1-D1 REMARK 2: T0553-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0553TS420_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 63 4.0 19 2.50 23.705 3.88 REMARK ---------------------------------------------------------- MOLECULE T0553TS420_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0553 REMARK MODEL 1 REMARK PARENT 2k9s_A ATOM 1 N TRP 44 1.992 -8.871 -8.438 1.00 0.00 N ATOM 2 CA TRP 44 2.963 -8.818 -9.555 1.00 0.00 C ATOM 3 CB TRP 44 4.294 -8.221 -9.082 1.00 0.00 C ATOM 4 CG TRP 44 4.223 -6.739 -8.809 1.00 0.00 C ATOM 5 CD2 TRP 44 4.516 -5.735 -9.791 1.00 0.00 C ATOM 6 CD1 TRP 44 3.893 -6.077 -7.664 1.00 0.00 C ATOM 7 NE1 TRP 44 3.964 -4.721 -7.871 1.00 0.00 N ATOM 8 CE2 TRP 44 4.345 -4.496 -9.178 1.00 0.00 C ATOM 9 CE3 TRP 44 4.894 -5.839 -11.099 1.00 0.00 C ATOM 10 CZ2 TRP 44 4.552 -3.332 -9.864 1.00 0.00 C ATOM 11 CZ3 TRP 44 5.104 -4.664 -11.788 1.00 0.00 C ATOM 12 CH2 TRP 44 4.938 -3.436 -11.182 1.00 0.00 C ATOM 13 C TRP 44 3.227 -10.184 -10.092 1.00 0.00 C ATOM 14 O TRP 44 3.326 -10.378 -11.302 1.00 0.00 O ATOM 15 N GLU 45 3.330 -11.176 -9.191 1.00 0.00 N ATOM 16 CA GLU 45 3.594 -12.513 -9.622 1.00 0.00 C ATOM 17 CB GLU 45 3.648 -13.514 -8.458 1.00 0.00 C ATOM 18 CG GLU 45 3.967 -14.942 -8.903 1.00 0.00 C ATOM 19 CD GLU 45 3.907 -15.831 -7.672 1.00 0.00 C ATOM 20 OE1 GLU 45 3.267 -15.405 -6.675 1.00 0.00 O ATOM 21 OE2 GLU 45 4.495 -16.945 -7.711 1.00 0.00 O ATOM 22 C GLU 45 2.455 -12.915 -10.494 1.00 0.00 C ATOM 23 O GLU 45 2.646 -13.532 -11.542 1.00 0.00 O ATOM 24 N SER 46 1.227 -12.547 -10.083 1.00 0.00 N ATOM 25 CA SER 46 0.078 -12.898 -10.859 1.00 0.00 C ATOM 26 CB SER 46 -1.232 -12.333 -10.285 1.00 0.00 C ATOM 27 OG SER 46 -2.332 -12.718 -11.097 1.00 0.00 O ATOM 28 C SER 46 0.289 -12.290 -12.202 1.00 0.00 C ATOM 29 O SER 46 0.150 -12.959 -13.224 1.00 0.00 O ATOM 30 N LYS 47 0.665 -11.000 -12.230 1.00 0.00 N ATOM 31 CA LYS 47 0.918 -10.388 -13.495 1.00 0.00 C ATOM 32 CB LYS 47 0.851 -8.849 -13.456 1.00 0.00 C ATOM 33 CG LYS 47 -0.568 -8.307 -13.280 1.00 0.00 C ATOM 34 CD LYS 47 -1.218 -8.701 -11.954 1.00 0.00 C ATOM 35 CE LYS 47 -2.640 -8.159 -11.788 1.00 0.00 C ATOM 36 NZ LYS 47 -3.224 -8.631 -10.511 1.00 0.00 N ATOM 37 C LYS 47 2.308 -10.784 -13.854 1.00 0.00 C ATOM 38 O LYS 47 3.242 -9.984 -13.824 1.00 0.00 O ATOM 39 N LEU 48 2.435 -12.060 -14.248 1.00 0.00 N ATOM 40 CA LEU 48 3.652 -12.725 -14.599 1.00 0.00 C ATOM 41 CB LEU 48 3.403 -14.226 -14.850 1.00 0.00 C ATOM 42 CG LEU 48 4.643 -15.044 -15.241 1.00 0.00 C ATOM 43 CD1 LEU 48 5.080 -14.733 -16.676 1.00 0.00 C ATOM 44 CD2 LEU 48 5.775 -14.867 -14.214 1.00 0.00 C ATOM 45 C LEU 48 4.156 -12.067 -15.834 1.00 0.00 C ATOM 46 O LEU 48 5.353 -12.037 -16.110 1.00 0.00 O ATOM 47 N GLY 49 3.231 -11.484 -16.602 1.00 0.00 N ATOM 48 CA GLY 49 3.598 -10.829 -17.809 1.00 0.00 C ATOM 49 C GLY 49 2.358 -10.785 -18.610 1.00 0.00 C ATOM 50 O GLY 49 2.256 -11.318 -19.714 1.00 0.00 O ATOM 51 N ASN 50 1.370 -10.105 -18.005 1.00 0.00 N ATOM 52 CA ASN 50 0.125 -9.831 -18.636 1.00 0.00 C ATOM 53 CB ASN 50 -0.906 -9.201 -17.686 1.00 0.00 C ATOM 54 CG ASN 50 -1.346 -10.277 -16.710 1.00 0.00 C ATOM 55 OD1 ASN 50 -1.431 -11.452 -17.065 1.00 0.00 O ATOM 56 ND2 ASN 50 -1.642 -9.871 -15.446 1.00 0.00 N ATOM 57 C ASN 50 0.437 -8.831 -19.686 1.00 0.00 C ATOM 58 O ASN 50 -0.041 -8.925 -20.811 1.00 0.00 O ATOM 59 N GLY 51 1.297 -7.857 -19.342 1.00 0.00 N ATOM 60 CA GLY 51 1.659 -6.821 -20.260 1.00 0.00 C ATOM 61 C GLY 51 1.046 -5.558 -19.756 1.00 0.00 C ATOM 62 O GLY 51 1.646 -4.488 -19.844 1.00 0.00 O ATOM 63 N GLU 52 -0.174 -5.644 -19.196 1.00 0.00 N ATOM 64 CA GLU 52 -0.724 -4.443 -18.651 1.00 0.00 C ATOM 65 CB GLU 52 -2.239 -4.264 -18.869 1.00 0.00 C ATOM 66 CG GLU 52 -3.099 -5.372 -18.257 1.00 0.00 C ATOM 67 CD GLU 52 -4.530 -4.859 -18.170 1.00 0.00 C ATOM 68 OE1 GLU 52 -4.739 -3.642 -18.423 1.00 0.00 O ATOM 69 OE2 GLU 52 -5.430 -5.675 -17.839 1.00 0.00 O ATOM 70 C GLU 52 -0.488 -4.522 -17.183 1.00 0.00 C ATOM 71 O GLU 52 -0.990 -5.415 -16.505 1.00 0.00 O ATOM 72 N ILE 53 0.304 -3.579 -16.650 1.00 0.00 N ATOM 73 CA ILE 53 0.569 -3.615 -15.246 1.00 0.00 C ATOM 74 CB ILE 53 2.031 -3.644 -14.906 1.00 0.00 C ATOM 75 CG2 ILE 53 2.169 -3.475 -13.384 1.00 0.00 C ATOM 76 CG1 ILE 53 2.679 -4.929 -15.444 1.00 0.00 C ATOM 77 CD1 ILE 53 4.206 -4.898 -15.426 1.00 0.00 C ATOM 78 C ILE 53 0.003 -2.373 -14.653 1.00 0.00 C ATOM 79 O ILE 53 0.124 -1.286 -15.218 1.00 0.00 O ATOM 80 N THR 54 -0.666 -2.525 -13.496 1.00 0.00 N ATOM 81 CA THR 54 -1.237 -1.385 -12.846 1.00 0.00 C ATOM 82 CB THR 54 -2.674 -1.580 -12.455 1.00 0.00 C ATOM 83 OG1 THR 54 -2.791 -2.646 -11.524 1.00 0.00 O ATOM 84 CG2 THR 54 -3.497 -1.884 -13.718 1.00 0.00 C ATOM 85 C THR 54 -0.465 -1.159 -11.587 1.00 0.00 C ATOM 86 O THR 54 -0.436 -2.002 -10.692 1.00 0.00 O ATOM 87 N VAL 55 0.190 0.009 -11.495 1.00 0.00 N ATOM 88 CA VAL 55 0.958 0.374 -10.343 1.00 0.00 C ATOM 89 CB VAL 55 1.658 1.689 -10.519 1.00 0.00 C ATOM 90 CG1 VAL 55 2.680 1.548 -11.662 1.00 0.00 C ATOM 91 CG2 VAL 55 0.596 2.775 -10.761 1.00 0.00 C ATOM 92 C VAL 55 0.012 0.523 -9.199 1.00 0.00 C ATOM 93 O VAL 55 0.341 0.220 -8.053 1.00 0.00 O ATOM 94 N LYS 56 -1.207 0.996 -9.505 1.00 0.00 N ATOM 95 CA LYS 56 -2.201 1.272 -8.511 1.00 0.00 C ATOM 96 CB LYS 56 -3.511 1.798 -9.129 1.00 0.00 C ATOM 97 CG LYS 56 -4.505 2.388 -8.122 1.00 0.00 C ATOM 98 CD LYS 56 -5.033 1.393 -7.089 1.00 0.00 C ATOM 99 CE LYS 56 -5.984 2.017 -6.065 1.00 0.00 C ATOM 100 NZ LYS 56 -6.455 0.987 -5.114 1.00 0.00 N ATOM 101 C LYS 56 -2.522 0.011 -7.774 1.00 0.00 C ATOM 102 O LYS 56 -2.720 0.022 -6.561 1.00 0.00 O ATOM 103 N GLU 57 -2.577 -1.126 -8.482 1.00 0.00 N ATOM 104 CA GLU 57 -2.962 -2.340 -7.827 1.00 0.00 C ATOM 105 CB GLU 57 -3.039 -3.533 -8.794 1.00 0.00 C ATOM 106 CG GLU 57 -3.582 -4.809 -8.149 1.00 0.00 C ATOM 107 CD GLU 57 -5.094 -4.669 -8.004 1.00 0.00 C ATOM 108 OE1 GLU 57 -5.666 -3.730 -8.619 1.00 0.00 O ATOM 109 OE2 GLU 57 -5.698 -5.500 -7.274 1.00 0.00 O ATOM 110 C GLU 57 -1.965 -2.674 -6.759 1.00 0.00 C ATOM 111 O GLU 57 -2.340 -3.110 -5.671 1.00 0.00 O ATOM 112 N PHE 58 -0.665 -2.468 -7.033 1.00 0.00 N ATOM 113 CA PHE 58 0.345 -2.857 -6.090 1.00 0.00 C ATOM 114 CB PHE 58 1.779 -2.684 -6.612 1.00 0.00 C ATOM 115 CG PHE 58 2.666 -3.239 -5.552 1.00 0.00 C ATOM 116 CD1 PHE 58 2.749 -4.600 -5.365 1.00 0.00 C ATOM 117 CD2 PHE 58 3.419 -2.411 -4.754 1.00 0.00 C ATOM 118 CE1 PHE 58 3.561 -5.126 -4.391 1.00 0.00 C ATOM 119 CE2 PHE 58 4.232 -2.933 -3.776 1.00 0.00 C ATOM 120 CZ PHE 58 4.306 -4.293 -3.592 1.00 0.00 C ATOM 121 C PHE 58 0.219 -2.067 -4.823 1.00 0.00 C ATOM 122 O PHE 58 0.311 -2.619 -3.730 1.00 0.00 O ATOM 123 N ILE 59 0.007 -0.746 -4.938 1.00 0.00 N ATOM 124 CA ILE 59 -0.078 0.107 -3.786 1.00 0.00 C ATOM 125 CB ILE 59 -0.193 1.543 -4.171 1.00 0.00 C ATOM 126 CG2 ILE 59 1.022 1.811 -5.074 1.00 0.00 C ATOM 127 CG1 ILE 59 -1.534 1.817 -4.872 1.00 0.00 C ATOM 128 CD1 ILE 59 -1.873 3.297 -5.036 1.00 0.00 C ATOM 129 C ILE 59 -1.283 -0.281 -2.991 1.00 0.00 C ATOM 130 O ILE 59 -1.250 -0.293 -1.761 1.00 0.00 O ATOM 131 N GLU 60 -2.383 -0.615 -3.690 1.00 0.00 N ATOM 132 CA GLU 60 -3.634 -0.969 -3.083 1.00 0.00 C ATOM 133 CB GLU 60 -4.682 -1.369 -4.135 1.00 0.00 C ATOM 134 CG GLU 60 -6.013 -1.840 -3.546 1.00 0.00 C ATOM 135 CD GLU 60 -6.792 -2.500 -4.676 1.00 0.00 C ATOM 136 OE1 GLU 60 -6.354 -2.369 -5.850 1.00 0.00 O ATOM 137 OE2 GLU 60 -7.830 -3.150 -4.381 1.00 0.00 O ATOM 138 C GLU 60 -3.441 -2.168 -2.211 1.00 0.00 C ATOM 139 O GLU 60 -3.966 -2.223 -1.100 1.00 0.00 O ATOM 140 N GLY 61 -2.663 -3.158 -2.681 1.00 0.00 N ATOM 141 CA GLY 61 -2.505 -4.358 -1.914 1.00 0.00 C ATOM 142 C GLY 61 -1.905 -3.991 -0.598 1.00 0.00 C ATOM 143 O GLY 61 -2.290 -4.521 0.443 1.00 0.00 O ATOM 144 N LEU 62 -0.934 -3.064 -0.629 1.00 0.00 N ATOM 145 CA LEU 62 -0.242 -2.592 0.533 1.00 0.00 C ATOM 146 CB LEU 62 0.932 -1.662 0.188 1.00 0.00 C ATOM 147 CG LEU 62 1.684 -1.141 1.425 1.00 0.00 C ATOM 148 CD1 LEU 62 2.326 -2.295 2.219 1.00 0.00 C ATOM 149 CD2 LEU 62 2.696 -0.049 1.042 1.00 0.00 C ATOM 150 C LEU 62 -1.208 -1.827 1.382 1.00 0.00 C ATOM 151 O LEU 62 -1.039 -1.741 2.596 1.00 0.00 O ATOM 152 N GLY 63 -2.236 -1.216 0.764 1.00 0.00 N ATOM 153 CA GLY 63 -3.162 -0.448 1.541 1.00 0.00 C ATOM 154 C GLY 63 -2.578 0.917 1.652 1.00 0.00 C ATOM 155 O GLY 63 -2.946 1.699 2.527 1.00 0.00 O ATOM 156 N TYR 64 -1.630 1.225 0.750 1.00 0.00 N ATOM 157 CA TYR 64 -0.997 2.509 0.753 1.00 0.00 C ATOM 158 CB TYR 64 0.482 2.473 1.161 1.00 0.00 C ATOM 159 CG TYR 64 0.523 2.166 2.616 1.00 0.00 C ATOM 160 CD1 TYR 64 0.315 0.885 3.071 1.00 0.00 C ATOM 161 CD2 TYR 64 0.776 3.166 3.527 1.00 0.00 C ATOM 162 CE1 TYR 64 0.357 0.606 4.417 1.00 0.00 C ATOM 163 CE2 TYR 64 0.820 2.893 4.873 1.00 0.00 C ATOM 164 CZ TYR 64 0.609 1.612 5.320 1.00 0.00 C ATOM 165 OH TYR 64 0.653 1.330 6.702 1.00 0.00 O ATOM 166 C TYR 64 -1.076 3.073 -0.628 1.00 0.00 C ATOM 167 O TYR 64 -1.371 2.365 -1.591 1.00 0.00 O ATOM 168 N SER 65 -0.837 4.394 -0.735 1.00 0.00 N ATOM 169 CA SER 65 -0.917 5.086 -1.987 1.00 0.00 C ATOM 170 CB SER 65 -0.975 6.618 -1.846 1.00 0.00 C ATOM 171 OG SER 65 -2.180 7.004 -1.199 1.00 0.00 O ATOM 172 C SER 65 0.282 4.750 -2.811 1.00 0.00 C ATOM 173 O SER 65 1.284 4.237 -2.316 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 173 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 55.65 71.4 42 33.9 124 ARMSMC SECONDARY STRUCTURE . . 54.93 78.8 33 40.2 82 ARMSMC SURFACE . . . . . . . . 58.58 66.7 30 33.3 90 ARMSMC BURIED . . . . . . . . 47.55 83.3 12 35.3 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.80 50.0 18 36.0 50 ARMSSC1 RELIABLE SIDE CHAINS . 81.65 52.9 17 36.2 47 ARMSSC1 SECONDARY STRUCTURE . . 75.01 57.1 14 43.8 32 ARMSSC1 SURFACE . . . . . . . . 89.24 42.9 14 35.9 39 ARMSSC1 BURIED . . . . . . . . 61.04 75.0 4 36.4 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.25 50.0 14 34.1 41 ARMSSC2 RELIABLE SIDE CHAINS . 70.00 54.5 11 30.6 36 ARMSSC2 SECONDARY STRUCTURE . . 80.07 50.0 12 44.4 27 ARMSSC2 SURFACE . . . . . . . . 68.68 60.0 10 33.3 30 ARMSSC2 BURIED . . . . . . . . 98.18 25.0 4 36.4 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.98 33.3 6 35.3 17 ARMSSC3 RELIABLE SIDE CHAINS . 62.98 33.3 6 40.0 15 ARMSSC3 SECONDARY STRUCTURE . . 59.67 40.0 5 45.5 11 ARMSSC3 SURFACE . . . . . . . . 57.79 40.0 5 31.2 16 ARMSSC3 BURIED . . . . . . . . 84.27 0.0 1 100.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.40 50.0 2 22.2 9 ARMSSC4 RELIABLE SIDE CHAINS . 86.40 50.0 2 22.2 9 ARMSSC4 SECONDARY STRUCTURE . . 86.40 50.0 2 40.0 5 ARMSSC4 SURFACE . . . . . . . . 86.40 50.0 2 22.2 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.88 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.88 22 34.9 63 CRMSCA CRN = ALL/NP . . . . . 0.1763 CRMSCA SECONDARY STRUCTURE . . 3.27 17 41.5 41 CRMSCA SURFACE . . . . . . . . 3.99 16 34.8 46 CRMSCA BURIED . . . . . . . . 3.55 6 35.3 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.01 106 34.3 309 CRMSMC SECONDARY STRUCTURE . . 3.41 82 40.8 201 CRMSMC SURFACE . . . . . . . . 4.15 78 34.5 226 CRMSMC BURIED . . . . . . . . 3.61 28 33.7 83 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 6.44 85 11.3 750 CRMSSC RELIABLE SIDE CHAINS . 6.35 77 10.5 730 CRMSSC SECONDARY STRUCTURE . . 6.28 71 14.7 484 CRMSSC SURFACE . . . . . . . . 6.58 65 11.7 554 CRMSSC BURIED . . . . . . . . 5.96 20 10.2 196 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.24 173 17.3 1002 CRMSALL SECONDARY STRUCTURE . . 5.01 139 21.5 648 CRMSALL SURFACE . . . . . . . . 5.41 129 17.5 738 CRMSALL BURIED . . . . . . . . 4.72 44 16.7 264 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.406 1.000 0.500 22 34.9 63 ERRCA SECONDARY STRUCTURE . . 3.086 1.000 0.500 17 41.5 41 ERRCA SURFACE . . . . . . . . 3.447 1.000 0.500 16 34.8 46 ERRCA BURIED . . . . . . . . 3.297 1.000 0.500 6 35.3 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.454 1.000 0.500 106 34.3 309 ERRMC SECONDARY STRUCTURE . . 3.122 1.000 0.500 82 40.8 201 ERRMC SURFACE . . . . . . . . 3.507 1.000 0.500 78 34.5 226 ERRMC BURIED . . . . . . . . 3.307 1.000 0.500 28 33.7 83 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.866 1.000 0.500 85 11.3 750 ERRSC RELIABLE SIDE CHAINS . 5.788 1.000 0.500 77 10.5 730 ERRSC SECONDARY STRUCTURE . . 5.733 1.000 0.500 71 14.7 484 ERRSC SURFACE . . . . . . . . 6.047 1.000 0.500 65 11.7 554 ERRSC BURIED . . . . . . . . 5.275 1.000 0.500 20 10.2 196 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.524 1.000 0.500 173 17.3 1002 ERRALL SECONDARY STRUCTURE . . 4.365 1.000 0.500 139 21.5 648 ERRALL SURFACE . . . . . . . . 4.660 1.000 0.500 129 17.5 738 ERRALL BURIED . . . . . . . . 4.124 1.000 0.500 44 16.7 264 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 12 20 21 22 63 DISTCA CA (P) 0.00 3.17 19.05 31.75 33.33 63 DISTCA CA (RMS) 0.00 1.62 2.40 3.04 3.25 DISTCA ALL (N) 1 13 64 113 162 173 1002 DISTALL ALL (P) 0.10 1.30 6.39 11.28 16.17 1002 DISTALL ALL (RMS) 0.55 1.54 2.37 3.04 4.53 DISTALL END of the results output