####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 26 ( 209), selected 26 , name T0553TS171_1 # Molecule2: number of CA atoms 134 ( 2159), selected 26 , name T0553.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0553TS171_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 117 - 133 4.97 10.06 LCS_AVERAGE: 12.08 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 111 - 117 1.69 16.29 LONGEST_CONTINUOUS_SEGMENT: 7 125 - 131 1.73 13.95 LCS_AVERAGE: 4.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 111 - 116 0.33 14.22 LONGEST_CONTINUOUS_SEGMENT: 6 125 - 130 0.94 13.30 LCS_AVERAGE: 3.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 26 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 111 G 111 6 7 14 6 6 6 6 7 8 9 10 11 12 12 13 13 17 20 22 23 23 24 24 LCS_GDT I 112 I 112 6 7 14 6 6 6 6 7 8 9 10 12 13 14 15 16 18 21 22 23 23 24 24 LCS_GDT R 113 R 113 6 7 14 6 6 6 6 7 8 9 10 11 12 13 15 16 18 21 22 23 23 24 24 LCS_GDT A 114 A 114 6 7 14 6 6 6 6 7 8 9 10 11 12 12 13 13 13 21 22 23 23 24 24 LCS_GDT F 115 F 115 6 7 14 6 6 6 6 7 8 9 10 11 12 12 13 14 17 21 22 23 23 24 24 LCS_GDT I 116 I 116 6 7 14 6 6 6 6 7 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT N 117 N 117 3 7 17 3 5 5 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT A 118 A 118 3 5 17 3 3 4 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT L 119 L 119 3 4 17 3 3 3 5 6 8 8 10 11 12 14 16 16 18 19 20 23 23 24 24 LCS_GDT V 120 V 120 3 5 17 3 3 4 5 6 8 9 10 11 12 14 16 16 18 21 22 23 23 24 24 LCS_GDT N 121 N 121 3 5 17 3 3 4 5 7 8 9 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT S 122 S 122 3 5 17 3 3 4 4 5 6 9 10 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT Q 123 Q 123 3 5 17 3 3 4 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT E 124 E 124 3 5 17 3 4 4 4 6 8 10 11 11 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT Y 125 Y 125 6 7 17 3 4 6 6 8 9 10 11 11 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT N 126 N 126 6 7 17 3 4 6 6 7 7 7 9 10 12 13 16 16 16 18 20 21 23 24 24 LCS_GDT E 127 E 127 6 7 17 3 4 6 6 7 7 7 8 10 12 13 14 14 15 16 17 18 19 21 22 LCS_GDT V 128 V 128 6 7 17 3 4 6 6 7 7 7 9 11 12 13 14 14 15 15 17 18 18 21 22 LCS_GDT F 129 F 129 6 7 17 3 4 6 6 7 7 7 10 11 12 13 16 16 18 21 22 23 23 24 24 LCS_GDT G 130 G 130 6 7 17 3 5 6 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT E 131 E 131 4 7 17 3 5 5 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT D 132 D 132 4 5 17 3 5 5 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT T 133 T 133 4 5 17 3 5 5 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 LCS_GDT V 134 V 134 4 5 16 3 4 4 4 6 7 7 9 12 12 14 15 16 18 21 22 23 23 24 24 LCS_GDT P 135 P 135 4 5 16 3 4 4 4 5 6 7 8 10 12 13 15 16 17 21 22 23 23 24 24 LCS_GDT Y 136 Y 136 4 4 16 3 4 4 4 4 5 7 7 10 12 13 14 14 17 21 22 23 23 24 24 LCS_AVERAGE LCS_A: 6.67 ( 3.44 4.48 12.08 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 6 6 8 9 10 11 12 13 14 16 16 18 21 22 23 23 24 24 GDT PERCENT_AT 4.48 4.48 4.48 4.48 5.97 6.72 7.46 8.21 8.96 9.70 10.45 11.94 11.94 13.43 15.67 16.42 17.16 17.16 17.91 17.91 GDT RMS_LOCAL 0.33 0.33 0.33 0.33 1.78 1.98 2.20 2.51 3.57 3.49 3.56 4.08 4.08 4.78 5.58 5.71 5.89 5.88 6.09 6.09 GDT RMS_ALL_AT 14.22 14.22 14.22 14.22 8.15 8.14 8.06 8.10 7.32 7.51 8.53 8.78 8.78 7.32 6.93 6.94 6.92 6.91 6.86 6.86 # Checking swapping # possible swapping detected: Y 125 Y 125 # possible swapping detected: E 127 E 127 # possible swapping detected: F 129 F 129 # possible swapping detected: E 131 E 131 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 111 G 111 16.102 0 0.191 0.191 17.838 0.000 0.000 LGA I 112 I 112 9.216 0 0.093 0.575 11.826 3.571 11.369 LGA R 113 R 113 10.272 0 0.076 1.360 19.547 0.714 0.260 LGA A 114 A 114 12.150 0 0.110 0.105 14.896 0.000 0.000 LGA F 115 F 115 9.567 0 0.045 1.261 11.257 4.405 1.645 LGA I 116 I 116 2.934 0 0.532 0.805 6.552 61.548 56.131 LGA N 117 N 117 2.109 0 0.378 1.238 8.229 67.262 43.155 LGA A 118 A 118 2.140 0 0.645 0.612 4.975 53.095 48.762 LGA L 119 L 119 7.460 0 0.183 1.107 13.295 12.857 6.607 LGA V 120 V 120 7.091 0 0.681 0.630 10.546 14.524 8.912 LGA N 121 N 121 4.228 0 0.677 0.971 9.210 40.476 25.595 LGA S 122 S 122 6.186 0 0.611 0.790 8.390 26.786 20.317 LGA Q 123 Q 123 1.570 0 0.660 1.157 6.510 70.952 49.471 LGA E 124 E 124 3.609 0 0.606 1.212 9.870 57.500 30.159 LGA Y 125 Y 125 2.227 0 0.052 1.551 11.398 53.095 33.175 LGA N 126 N 126 6.247 0 0.492 1.340 12.741 18.929 9.821 LGA E 127 E 127 10.866 0 0.088 0.602 19.349 0.357 0.159 LGA V 128 V 128 11.494 0 0.086 1.081 14.207 0.000 0.000 LGA F 129 F 129 7.256 0 0.236 1.073 14.562 24.643 9.654 LGA G 130 G 130 2.351 0 0.321 0.321 4.708 60.476 60.476 LGA E 131 E 131 1.034 0 0.387 0.807 6.700 71.429 52.381 LGA D 132 D 132 1.626 0 0.633 0.819 4.671 64.881 77.738 LGA T 133 T 133 1.979 0 0.084 1.063 4.990 57.262 63.129 LGA V 134 V 134 8.252 0 0.144 0.163 12.822 8.452 4.830 LGA P 135 P 135 11.540 0 0.310 0.361 14.809 0.000 0.000 LGA Y 136 Y 136 16.180 0 0.562 1.426 18.612 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 26 104 104 100.00 208 208 100.00 134 SUMMARY(RMSD_GDC): 6.771 6.548 8.204 5.770 4.580 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 26 134 4.0 11 2.51 8.396 7.279 0.422 LGA_LOCAL RMSD: 2.507 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.103 Number of assigned atoms: 26 Std_ASGN_ATOMS RMSD: 6.771 Standard rmsd on all 26 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.481551 * X + 0.011510 * Y + -0.876343 * Z + 3.849920 Y_new = -0.806434 * X + 0.397357 * Y + -0.437917 * Z + 16.227211 Z_new = 0.343180 * X + 0.917592 * Y + 0.200630 * Z + -45.379501 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.032486 -0.350300 1.355536 [DEG: -59.1571 -20.0707 77.6665 ] ZXZ: -1.107381 1.368796 0.357894 [DEG: -63.4483 78.4262 20.5058 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0553TS171_1 REMARK 2: T0553.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0553TS171_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 26 134 4.0 11 2.51 7.279 6.77 REMARK ---------------------------------------------------------- MOLECULE T0553TS171_1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0553 REMARK MODEL 1 REMARK PARENT 1vzm_A ATOM 1 N GLY 111 3.472 5.828 3.943 1.00 0.00 N ATOM 2 CA GLY 111 2.125 6.389 4.181 1.00 0.00 C ATOM 3 C GLY 111 1.096 5.491 3.592 1.00 0.00 C ATOM 4 O GLY 111 1.199 5.086 2.437 1.00 0.00 O ATOM 5 N ILE 112 0.061 5.167 4.383 1.00 0.00 N ATOM 6 CA ILE 112 -0.979 4.307 3.914 1.00 0.00 C ATOM 7 CB ILE 112 -2.010 4.012 4.967 1.00 0.00 C ATOM 8 CG2 ILE 112 -2.641 5.333 5.444 1.00 0.00 C ATOM 9 CG1 ILE 112 -3.015 2.981 4.424 1.00 0.00 C ATOM 10 CD1 ILE 112 -3.962 2.425 5.483 1.00 0.00 C ATOM 11 C ILE 112 -1.661 4.978 2.770 1.00 0.00 C ATOM 12 O ILE 112 -1.954 4.360 1.750 1.00 0.00 O ATOM 13 N ARG 113 -1.896 6.292 2.899 1.00 0.00 N ATOM 14 CA ARG 113 -2.628 7.005 1.901 1.00 0.00 C ATOM 15 CB ARG 113 -2.794 8.489 2.292 1.00 0.00 C ATOM 16 CG ARG 113 -3.811 9.267 1.456 1.00 0.00 C ATOM 17 CD ARG 113 -4.210 10.617 2.065 1.00 0.00 C ATOM 18 NE ARG 113 -4.901 10.356 3.364 1.00 0.00 N ATOM 19 CZ ARG 113 -4.197 10.343 4.533 1.00 0.00 C ATOM 20 NH1 ARG 113 -2.858 10.608 4.544 1.00 0.00 N ATOM 21 NH2 ARG 113 -4.844 10.068 5.704 1.00 0.00 N ATOM 22 C ARG 113 -1.894 6.879 0.603 1.00 0.00 C ATOM 23 O ARG 113 -2.498 6.640 -0.441 1.00 0.00 O ATOM 24 N ALA 114 -0.558 7.012 0.624 1.00 0.00 N ATOM 25 CA ALA 114 0.139 6.905 -0.619 1.00 0.00 C ATOM 26 CB ALA 114 1.652 7.129 -0.477 1.00 0.00 C ATOM 27 C ALA 114 -0.050 5.526 -1.171 1.00 0.00 C ATOM 28 O ALA 114 -0.385 5.361 -2.343 1.00 0.00 O ATOM 29 N PHE 115 0.136 4.489 -0.331 1.00 0.00 N ATOM 30 CA PHE 115 0.058 3.151 -0.838 1.00 0.00 C ATOM 31 CB PHE 115 0.365 2.063 0.210 1.00 0.00 C ATOM 32 CG PHE 115 1.829 2.011 0.480 1.00 0.00 C ATOM 33 CD1 PHE 115 2.414 2.881 1.364 1.00 0.00 C ATOM 34 CD2 PHE 115 2.614 1.069 -0.144 1.00 0.00 C ATOM 35 CE1 PHE 115 3.761 2.828 1.617 1.00 0.00 C ATOM 36 CE2 PHE 115 3.966 1.006 0.102 1.00 0.00 C ATOM 37 CZ PHE 115 4.541 1.892 0.983 1.00 0.00 C ATOM 38 C PHE 115 -1.314 2.838 -1.332 1.00 0.00 C ATOM 39 O PHE 115 -1.492 2.453 -2.486 1.00 0.00 O ATOM 40 N ILE 116 -2.328 3.029 -0.472 1.00 0.00 N ATOM 41 CA ILE 116 -3.640 2.588 -0.840 1.00 0.00 C ATOM 42 CB ILE 116 -3.874 1.155 -0.433 1.00 0.00 C ATOM 43 CG2 ILE 116 -3.973 1.121 1.101 1.00 0.00 C ATOM 44 CG1 ILE 116 -5.076 0.521 -1.160 1.00 0.00 C ATOM 45 CD1 ILE 116 -4.862 0.379 -2.665 1.00 0.00 C ATOM 46 C ILE 116 -4.640 3.456 -0.143 1.00 0.00 C ATOM 47 O ILE 116 -4.314 4.521 0.382 1.00 0.00 O ATOM 48 N ASN 117 -5.911 3.014 -0.148 1.00 0.00 N ATOM 49 CA ASN 117 -6.985 3.707 0.493 1.00 0.00 C ATOM 50 CB ASN 117 -6.837 3.803 2.027 1.00 0.00 C ATOM 51 CG ASN 117 -7.304 2.491 2.647 1.00 0.00 C ATOM 52 OD1 ASN 117 -8.424 2.049 2.399 1.00 0.00 O ATOM 53 ND2 ASN 117 -6.433 1.857 3.476 1.00 0.00 N ATOM 54 C ASN 117 -7.120 5.086 -0.057 1.00 0.00 C ATOM 55 O ASN 117 -7.353 6.031 0.694 1.00 0.00 O ATOM 56 N ALA 118 -6.969 5.247 -1.387 1.00 0.00 N ATOM 57 CA ALA 118 -7.227 6.542 -1.946 1.00 0.00 C ATOM 58 CB ALA 118 -6.113 7.059 -2.874 1.00 0.00 C ATOM 59 C ALA 118 -8.456 6.364 -2.778 1.00 0.00 C ATOM 60 O ALA 118 -8.473 5.542 -3.692 1.00 0.00 O ATOM 61 N LEU 119 -9.531 7.123 -2.475 1.00 0.00 N ATOM 62 CA LEU 119 -10.729 6.943 -3.242 1.00 0.00 C ATOM 63 CB LEU 119 -11.865 7.878 -2.753 1.00 0.00 C ATOM 64 CG LEU 119 -13.242 7.791 -3.464 1.00 0.00 C ATOM 65 CD1 LEU 119 -14.253 8.726 -2.775 1.00 0.00 C ATOM 66 CD2 LEU 119 -13.179 8.094 -4.970 1.00 0.00 C ATOM 67 C LEU 119 -10.377 7.302 -4.644 1.00 0.00 C ATOM 68 O LEU 119 -10.414 6.452 -5.532 1.00 0.00 O ATOM 69 N VAL 120 -9.970 8.573 -4.847 1.00 0.00 N ATOM 70 CA VAL 120 -9.537 9.121 -6.102 1.00 0.00 C ATOM 71 CB VAL 120 -10.630 9.379 -7.118 1.00 0.00 C ATOM 72 CG1 VAL 120 -9.997 10.098 -8.323 1.00 0.00 C ATOM 73 CG2 VAL 120 -11.336 8.074 -7.516 1.00 0.00 C ATOM 74 C VAL 120 -9.014 10.479 -5.760 1.00 0.00 C ATOM 75 O VAL 120 -9.465 11.094 -4.796 1.00 0.00 O ATOM 76 N ASN 121 -8.017 10.981 -6.513 1.00 0.00 N ATOM 77 CA ASN 121 -7.609 12.332 -6.266 1.00 0.00 C ATOM 78 CB ASN 121 -6.882 12.560 -4.930 1.00 0.00 C ATOM 79 CG ASN 121 -6.923 14.056 -4.671 1.00 0.00 C ATOM 80 OD1 ASN 121 -6.060 14.610 -3.994 1.00 0.00 O ATOM 81 ND2 ASN 121 -7.959 14.741 -5.222 1.00 0.00 N ATOM 82 C ASN 121 -6.689 12.742 -7.367 1.00 0.00 C ATOM 83 O ASN 121 -6.027 11.913 -7.987 1.00 0.00 O ATOM 84 N SER 122 -6.646 14.056 -7.647 1.00 0.00 N ATOM 85 CA SER 122 -5.786 14.563 -8.673 1.00 0.00 C ATOM 86 CB SER 122 -5.990 16.065 -8.931 1.00 0.00 C ATOM 87 OG SER 122 -5.699 16.806 -7.756 1.00 0.00 O ATOM 88 C SER 122 -4.374 14.362 -8.229 1.00 0.00 C ATOM 89 O SER 122 -3.504 14.010 -9.026 1.00 0.00 O ATOM 90 N GLN 123 -4.114 14.566 -6.925 1.00 0.00 N ATOM 91 CA GLN 123 -2.776 14.436 -6.432 1.00 0.00 C ATOM 92 CB GLN 123 -2.598 14.981 -5.003 1.00 0.00 C ATOM 93 CG GLN 123 -3.078 16.428 -4.835 1.00 0.00 C ATOM 94 CD GLN 123 -2.317 17.339 -5.792 1.00 0.00 C ATOM 95 OE1 GLN 123 -2.554 17.329 -7.000 1.00 0.00 O ATOM 96 NE2 GLN 123 -1.381 18.159 -5.242 1.00 0.00 N ATOM 97 C GLN 123 -2.450 12.976 -6.432 1.00 0.00 C ATOM 98 O GLN 123 -3.326 12.136 -6.227 1.00 0.00 O ATOM 99 N GLU 124 -1.173 12.633 -6.690 1.00 0.00 N ATOM 100 CA GLU 124 -0.810 11.249 -6.759 1.00 0.00 C ATOM 101 CB GLU 124 0.185 10.955 -7.893 1.00 0.00 C ATOM 102 CG GLU 124 -0.387 11.187 -9.293 1.00 0.00 C ATOM 103 CD GLU 124 -0.351 12.675 -9.608 1.00 0.00 C ATOM 104 OE1 GLU 124 0.207 13.447 -8.784 1.00 0.00 O ATOM 105 OE2 GLU 124 -0.885 13.061 -10.682 1.00 0.00 O ATOM 106 C GLU 124 -0.142 10.870 -5.478 1.00 0.00 C ATOM 107 O GLU 124 1.010 11.228 -5.240 1.00 0.00 O ATOM 108 N TYR 125 -0.861 10.123 -4.616 1.00 0.00 N ATOM 109 CA TYR 125 -0.304 9.724 -3.362 1.00 0.00 C ATOM 110 CB TYR 125 -1.329 9.003 -2.481 1.00 0.00 C ATOM 111 CG TYR 125 -2.458 9.958 -2.353 1.00 0.00 C ATOM 112 CD1 TYR 125 -3.462 9.968 -3.293 1.00 0.00 C ATOM 113 CD2 TYR 125 -2.503 10.856 -1.315 1.00 0.00 C ATOM 114 CE1 TYR 125 -4.512 10.848 -3.199 1.00 0.00 C ATOM 115 CE2 TYR 125 -3.549 11.740 -1.215 1.00 0.00 C ATOM 116 CZ TYR 125 -4.552 11.737 -2.154 1.00 0.00 C ATOM 117 OH TYR 125 -5.627 12.645 -2.053 1.00 0.00 O ATOM 118 C TYR 125 0.807 8.771 -3.628 1.00 0.00 C ATOM 119 O TYR 125 1.925 8.961 -3.153 1.00 0.00 O ATOM 120 N ASN 126 0.534 7.726 -4.431 1.00 0.00 N ATOM 121 CA ASN 126 1.559 6.768 -4.697 1.00 0.00 C ATOM 122 CB ASN 126 2.077 6.036 -3.445 1.00 0.00 C ATOM 123 CG ASN 126 3.439 5.423 -3.763 1.00 0.00 C ATOM 124 OD1 ASN 126 3.712 4.980 -4.878 1.00 0.00 O ATOM 125 ND2 ASN 126 4.337 5.403 -2.742 1.00 0.00 N ATOM 126 C ASN 126 0.973 5.746 -5.609 1.00 0.00 C ATOM 127 O ASN 126 0.350 6.065 -6.619 1.00 0.00 O ATOM 128 N GLU 127 1.172 4.466 -5.257 1.00 0.00 N ATOM 129 CA GLU 127 0.723 3.398 -6.090 1.00 0.00 C ATOM 130 CB GLU 127 1.048 2.006 -5.524 1.00 0.00 C ATOM 131 CG GLU 127 0.674 0.869 -6.479 1.00 0.00 C ATOM 132 CD GLU 127 1.041 -0.444 -5.807 1.00 0.00 C ATOM 133 OE1 GLU 127 1.231 -0.438 -4.562 1.00 0.00 O ATOM 134 OE2 GLU 127 1.128 -1.473 -6.531 1.00 0.00 O ATOM 135 C GLU 127 -0.760 3.471 -6.234 1.00 0.00 C ATOM 136 O GLU 127 -1.283 3.249 -7.324 1.00 0.00 O ATOM 137 N VAL 128 -1.486 3.786 -5.145 1.00 0.00 N ATOM 138 CA VAL 128 -2.913 3.785 -5.257 1.00 0.00 C ATOM 139 CB VAL 128 -3.619 4.112 -3.969 1.00 0.00 C ATOM 140 CG1 VAL 128 -3.231 5.527 -3.504 1.00 0.00 C ATOM 141 CG2 VAL 128 -5.130 3.923 -4.187 1.00 0.00 C ATOM 142 C VAL 128 -3.311 4.776 -6.293 1.00 0.00 C ATOM 143 O VAL 128 -4.096 4.458 -7.184 1.00 0.00 O ATOM 144 N PHE 129 -2.767 6.004 -6.242 1.00 0.00 N ATOM 145 CA PHE 129 -3.200 6.878 -7.279 1.00 0.00 C ATOM 146 CB PHE 129 -3.808 8.183 -6.763 1.00 0.00 C ATOM 147 CG PHE 129 -4.665 8.645 -7.880 1.00 0.00 C ATOM 148 CD1 PHE 129 -5.928 8.116 -8.004 1.00 0.00 C ATOM 149 CD2 PHE 129 -4.224 9.568 -8.798 1.00 0.00 C ATOM 150 CE1 PHE 129 -6.757 8.511 -9.025 1.00 0.00 C ATOM 151 CE2 PHE 129 -5.050 9.965 -9.822 1.00 0.00 C ATOM 152 CZ PHE 129 -6.315 9.437 -9.939 1.00 0.00 C ATOM 153 C PHE 129 -1.994 7.205 -8.092 1.00 0.00 C ATOM 154 O PHE 129 -1.084 7.895 -7.637 1.00 0.00 O ATOM 155 N GLY 130 -1.982 6.730 -9.347 1.00 0.00 N ATOM 156 CA GLY 130 -0.857 6.890 -10.220 1.00 0.00 C ATOM 157 C GLY 130 -0.197 5.553 -10.234 1.00 0.00 C ATOM 158 O GLY 130 0.400 5.134 -9.244 1.00 0.00 O ATOM 159 N GLU 131 -0.273 4.849 -11.378 1.00 0.00 N ATOM 160 CA GLU 131 0.243 3.513 -11.408 1.00 0.00 C ATOM 161 CB GLU 131 0.010 2.842 -12.773 1.00 0.00 C ATOM 162 CG GLU 131 0.426 1.370 -12.839 1.00 0.00 C ATOM 163 CD GLU 131 0.008 0.838 -14.203 1.00 0.00 C ATOM 164 OE1 GLU 131 0.431 1.445 -15.224 1.00 0.00 O ATOM 165 OE2 GLU 131 -0.744 -0.172 -14.247 1.00 0.00 O ATOM 166 C GLU 131 1.714 3.539 -11.155 1.00 0.00 C ATOM 167 O GLU 131 2.198 2.906 -10.218 1.00 0.00 O ATOM 168 N ASP 132 2.470 4.292 -11.972 1.00 0.00 N ATOM 169 CA ASP 132 3.879 4.343 -11.731 1.00 0.00 C ATOM 170 CB ASP 132 4.751 4.346 -12.998 1.00 0.00 C ATOM 171 CG ASP 132 4.441 5.581 -13.830 1.00 0.00 C ATOM 172 OD1 ASP 132 3.345 6.170 -13.632 1.00 0.00 O ATOM 173 OD2 ASP 132 5.297 5.948 -14.680 1.00 0.00 O ATOM 174 C ASP 132 4.139 5.580 -10.949 1.00 0.00 C ATOM 175 O ASP 132 3.254 6.421 -10.795 1.00 0.00 O ATOM 176 N THR 133 5.371 5.729 -10.427 1.00 0.00 N ATOM 177 CA THR 133 5.626 6.894 -9.641 1.00 0.00 C ATOM 178 CB THR 133 6.989 6.935 -9.021 1.00 0.00 C ATOM 179 OG1 THR 133 7.099 8.061 -8.163 1.00 0.00 O ATOM 180 CG2 THR 133 8.039 7.009 -10.143 1.00 0.00 C ATOM 181 C THR 133 5.493 8.073 -10.538 1.00 0.00 C ATOM 182 O THR 133 5.955 8.059 -11.680 1.00 0.00 O ATOM 183 N VAL 134 4.819 9.121 -10.019 1.00 0.00 N ATOM 184 CA VAL 134 4.596 10.329 -10.752 1.00 0.00 C ATOM 185 CB VAL 134 5.775 10.789 -11.579 1.00 0.00 C ATOM 186 CG1 VAL 134 5.397 12.053 -12.377 1.00 0.00 C ATOM 187 CG2 VAL 134 6.978 10.999 -10.646 1.00 0.00 C ATOM 188 C VAL 134 3.445 10.058 -11.659 1.00 0.00 C ATOM 189 O VAL 134 3.110 8.907 -11.935 1.00 0.00 O ATOM 190 N PRO 135 2.805 11.091 -12.105 1.00 0.00 N ATOM 191 CA PRO 135 1.725 10.903 -13.026 1.00 0.00 C ATOM 192 CD PRO 135 2.582 12.253 -11.263 1.00 0.00 C ATOM 193 CB PRO 135 0.953 12.227 -13.057 1.00 0.00 C ATOM 194 CG PRO 135 1.772 13.189 -12.171 1.00 0.00 C ATOM 195 C PRO 135 2.241 10.431 -14.347 1.00 0.00 C ATOM 196 O PRO 135 3.348 10.806 -14.732 1.00 0.00 O ATOM 197 N TYR 136 1.455 9.589 -15.044 1.00 0.00 N ATOM 198 CA TYR 136 1.872 9.062 -16.306 1.00 0.00 C ATOM 199 CB TYR 136 1.546 7.565 -16.474 1.00 0.00 C ATOM 200 CG TYR 136 0.068 7.378 -16.534 1.00 0.00 C ATOM 201 CD1 TYR 136 -0.707 7.487 -15.401 1.00 0.00 C ATOM 202 CD2 TYR 136 -0.539 7.070 -17.729 1.00 0.00 C ATOM 203 CE1 TYR 136 -2.070 7.308 -15.465 1.00 0.00 C ATOM 204 CE2 TYR 136 -1.899 6.891 -17.798 1.00 0.00 C ATOM 205 CZ TYR 136 -2.668 7.010 -16.665 1.00 0.00 C ATOM 206 OH TYR 136 -4.064 6.825 -16.733 1.00 0.00 O ATOM 207 C TYR 136 1.122 9.846 -17.378 1.00 0.00 C ATOM 208 O TYR 136 0.893 9.282 -18.481 1.00 0.00 O ATOM 209 OXT TYR 136 0.775 11.028 -17.113 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.24 48.0 50 18.8 266 ARMSMC SECONDARY STRUCTURE . . 80.06 53.3 30 17.0 176 ARMSMC SURFACE . . . . . . . . 82.27 41.7 24 15.2 158 ARMSMC BURIED . . . . . . . . 86.01 53.8 26 24.1 108 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.29 31.8 22 19.6 112 ARMSSC1 RELIABLE SIDE CHAINS . 97.86 26.3 19 18.1 105 ARMSSC1 SECONDARY STRUCTURE . . 100.74 23.1 13 17.6 74 ARMSSC1 SURFACE . . . . . . . . 98.40 27.3 11 16.2 68 ARMSSC1 BURIED . . . . . . . . 89.99 36.4 11 25.0 44 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.51 52.9 17 18.3 93 ARMSSC2 RELIABLE SIDE CHAINS . 62.97 61.5 13 17.3 75 ARMSSC2 SECONDARY STRUCTURE . . 61.87 54.5 11 17.5 63 ARMSSC2 SURFACE . . . . . . . . 69.39 30.0 10 17.5 57 ARMSSC2 BURIED . . . . . . . . 41.50 85.7 7 19.4 36 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.16 20.0 5 14.7 34 ARMSSC3 RELIABLE SIDE CHAINS . 58.36 25.0 4 14.3 28 ARMSSC3 SECONDARY STRUCTURE . . 86.66 25.0 4 16.0 25 ARMSSC3 SURFACE . . . . . . . . 80.16 20.0 5 16.7 30 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 154.86 0.0 1 6.2 16 ARMSSC4 RELIABLE SIDE CHAINS . 154.86 0.0 1 6.2 16 ARMSSC4 SECONDARY STRUCTURE . . 154.86 0.0 1 9.1 11 ARMSSC4 SURFACE . . . . . . . . 154.86 0.0 1 6.7 15 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.77 (Number of atoms: 26) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.77 26 19.4 134 CRMSCA CRN = ALL/NP . . . . . 0.2604 CRMSCA SECONDARY STRUCTURE . . 7.42 15 17.0 88 CRMSCA SURFACE . . . . . . . . 7.58 13 16.2 80 CRMSCA BURIED . . . . . . . . 5.86 13 24.1 54 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.87 128 19.4 660 CRMSMC SECONDARY STRUCTURE . . 7.49 75 17.2 435 CRMSMC SURFACE . . . . . . . . 7.64 64 16.2 395 CRMSMC BURIED . . . . . . . . 6.00 64 24.2 265 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.65 104 6.4 1623 CRMSSC RELIABLE SIDE CHAINS . 9.35 88 5.6 1559 CRMSSC SECONDARY STRUCTURE . . 10.54 65 5.9 1096 CRMSSC SURFACE . . . . . . . . 10.35 55 5.7 961 CRMSSC BURIED . . . . . . . . 8.79 49 7.4 662 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.25 208 9.6 2159 CRMSALL SECONDARY STRUCTURE . . 9.05 125 8.6 1448 CRMSALL SURFACE . . . . . . . . 9.01 107 8.4 1281 CRMSALL BURIED . . . . . . . . 7.36 101 11.5 878 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.336 1.000 0.500 26 19.4 134 ERRCA SECONDARY STRUCTURE . . 7.017 1.000 0.500 15 17.0 88 ERRCA SURFACE . . . . . . . . 7.053 1.000 0.500 13 16.2 80 ERRCA BURIED . . . . . . . . 5.620 1.000 0.500 13 24.1 54 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.396 1.000 0.500 128 19.4 660 ERRMC SECONDARY STRUCTURE . . 7.055 1.000 0.500 75 17.2 435 ERRMC SURFACE . . . . . . . . 7.089 1.000 0.500 64 16.2 395 ERRMC BURIED . . . . . . . . 5.703 1.000 0.500 64 24.2 265 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.970 1.000 0.500 104 6.4 1623 ERRSC RELIABLE SIDE CHAINS . 8.677 1.000 0.500 88 5.6 1559 ERRSC SECONDARY STRUCTURE . . 9.839 1.000 0.500 65 5.9 1096 ERRSC SURFACE . . . . . . . . 9.442 1.000 0.500 55 5.7 961 ERRSC BURIED . . . . . . . . 8.440 1.000 0.500 49 7.4 662 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.546 1.000 0.500 208 9.6 2159 ERRALL SECONDARY STRUCTURE . . 8.346 1.000 0.500 125 8.6 1448 ERRALL SURFACE . . . . . . . . 8.175 1.000 0.500 107 8.4 1281 ERRALL BURIED . . . . . . . . 6.881 1.000 0.500 101 11.5 878 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 7 24 26 134 DISTCA CA (P) 0.00 0.00 0.75 5.22 17.91 134 DISTCA CA (RMS) 0.00 0.00 2.15 3.58 6.19 DISTCA ALL (N) 0 0 8 52 154 208 2159 DISTALL ALL (P) 0.00 0.00 0.37 2.41 7.13 2159 DISTALL ALL (RMS) 0.00 0.00 2.66 3.91 6.29 DISTALL END of the results output