####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 180), selected 45 , name T0553AL285_1-D2 # Molecule2: number of CA atoms 71 ( 1157), selected 45 , name T0553-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0553AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 66 - 92 4.52 20.80 LONGEST_CONTINUOUS_SEGMENT: 20 96 - 120 4.86 19.76 LCS_AVERAGE: 27.82 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 66 - 77 1.86 14.09 LCS_AVERAGE: 12.08 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 100 - 108 0.31 13.29 LONGEST_CONTINUOUS_SEGMENT: 9 114 - 122 0.75 18.14 LCS_AVERAGE: 9.30 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 66 N 66 8 12 20 6 7 9 9 11 13 13 15 17 19 20 21 22 22 24 28 31 33 34 34 LCS_GDT L 67 L 67 8 12 20 6 7 9 10 11 13 13 15 17 19 20 21 22 22 24 28 31 33 34 34 LCS_GDT Y 68 Y 68 8 12 20 6 7 9 10 11 13 13 15 17 19 20 21 22 22 27 29 31 33 34 34 LCS_GDT L 69 L 69 8 12 20 6 7 9 10 11 13 13 15 17 19 20 22 25 26 27 29 31 33 34 34 LCS_GDT K 70 K 70 8 12 20 6 7 9 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT E 71 E 71 8 12 20 6 7 9 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT F 72 F 72 8 12 20 3 7 9 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT Y 73 Y 73 8 12 20 3 5 9 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT T 74 T 74 5 12 20 3 5 6 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT P 75 P 75 5 12 20 3 4 6 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT Y 76 Y 76 5 12 20 3 5 9 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT P 77 P 77 4 12 20 4 4 6 7 10 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT N 78 N 78 4 4 20 4 4 4 4 5 8 11 15 17 19 20 21 22 22 23 29 31 33 34 34 LCS_GDT T 79 T 79 4 5 20 4 4 4 6 9 10 11 14 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT K 80 K 80 4 5 20 4 4 4 6 7 9 12 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT V 81 V 81 4 5 20 3 3 4 6 6 9 12 15 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT I 82 I 82 4 5 20 3 3 4 8 11 11 13 15 17 19 20 21 22 22 26 28 31 33 34 34 LCS_GDT E 83 E 83 4 5 20 1 3 10 10 11 11 11 11 15 15 17 18 21 21 23 24 25 27 29 33 LCS_GDT L 84 L 84 3 3 20 0 3 4 4 5 9 9 11 12 15 16 18 21 21 23 24 25 27 29 31 LCS_GDT R 92 R 92 0 0 20 0 3 3 6 6 6 11 11 11 12 14 17 21 21 23 24 25 27 29 31 LCS_GDT A 93 A 93 4 5 17 4 4 4 4 4 6 6 6 7 9 11 16 18 21 23 24 25 27 29 31 LCS_GDT P 94 P 94 4 5 19 4 4 4 4 4 6 6 7 8 10 11 16 18 21 23 24 25 27 29 31 LCS_GDT I 95 I 95 4 5 19 4 4 4 4 4 6 6 7 11 11 15 17 21 21 23 24 25 27 29 31 LCS_GDT D 96 D 96 4 5 20 4 4 4 4 4 7 9 13 14 15 16 17 21 21 23 24 25 27 29 31 LCS_GDT Q 97 Q 97 3 5 20 3 3 3 4 6 9 11 13 14 15 16 17 21 21 23 24 25 27 29 31 LCS_GDT A 98 A 98 3 4 20 3 3 3 4 4 7 9 13 14 15 16 17 21 21 23 24 25 27 29 31 LCS_GDT E 99 E 99 3 10 20 3 3 4 8 9 10 11 13 14 15 16 17 21 21 23 24 25 27 29 33 LCS_GDT I 100 I 100 9 10 20 9 9 10 10 11 12 13 15 17 19 20 21 22 22 26 28 31 33 34 34 LCS_GDT R 101 R 101 9 10 20 9 9 10 10 11 13 13 14 17 19 20 23 25 26 27 29 31 33 34 34 LCS_GDT K 102 K 102 9 10 20 9 9 10 10 11 11 12 14 16 18 19 23 25 26 27 29 31 33 34 34 LCS_GDT Y 103 Y 103 9 10 20 9 9 10 10 11 11 12 14 16 18 20 23 25 26 27 29 31 33 34 34 LCS_GDT N 104 N 104 9 10 20 9 9 10 10 11 11 11 14 14 16 19 23 25 26 27 29 31 33 34 34 LCS_GDT Q 105 Q 105 9 10 20 9 9 10 10 11 11 11 13 14 15 19 23 25 26 27 29 31 33 34 34 LCS_GDT I 106 I 106 9 10 20 9 9 10 10 11 11 11 13 14 15 19 23 25 26 27 29 31 33 34 34 LCS_GDT L 107 L 107 9 10 20 9 9 10 10 11 11 11 13 13 14 19 23 25 26 27 29 31 33 34 34 LCS_GDT A 108 A 108 9 10 20 9 9 10 10 11 11 11 11 11 13 16 18 18 20 21 23 25 29 32 34 LCS_GDT A 114 A 114 9 9 20 7 8 8 9 9 10 11 13 14 15 16 18 19 20 27 27 30 33 34 34 LCS_GDT F 115 F 115 9 9 20 7 8 8 9 9 10 11 13 14 15 16 23 25 26 27 29 31 33 34 34 LCS_GDT I 116 I 116 9 9 20 7 8 8 9 9 10 11 13 14 15 19 23 25 26 27 29 31 33 34 34 LCS_GDT N 117 N 117 9 9 20 7 8 8 9 9 10 11 13 14 15 19 23 25 26 27 29 31 33 34 34 LCS_GDT A 118 A 118 9 9 20 7 8 8 9 9 10 11 13 13 13 18 23 25 26 27 29 31 33 34 34 LCS_GDT L 119 L 119 9 9 20 7 8 8 9 9 10 11 13 13 13 18 23 25 26 27 29 31 33 34 34 LCS_GDT V 120 V 120 9 9 20 7 8 8 9 9 10 11 13 13 14 15 23 25 26 27 29 31 33 34 34 LCS_GDT N 121 N 121 9 9 17 3 8 8 9 9 10 11 13 13 13 19 23 25 26 27 29 31 33 34 34 LCS_GDT S 122 S 122 9 9 17 3 3 3 9 9 10 11 13 13 13 15 18 19 26 27 29 31 33 34 34 LCS_AVERAGE LCS_A: 16.40 ( 9.30 12.08 27.82 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 9 10 10 11 13 13 15 17 19 20 23 25 26 27 29 31 33 34 34 GDT PERCENT_AT 12.68 12.68 14.08 14.08 15.49 18.31 18.31 21.13 23.94 26.76 28.17 32.39 35.21 36.62 38.03 40.85 43.66 46.48 47.89 47.89 GDT RMS_LOCAL 0.31 0.31 0.72 0.72 1.01 2.08 2.08 2.70 2.98 3.40 3.62 4.76 4.91 4.99 5.18 5.46 5.75 6.01 6.17 6.17 GDT RMS_ALL_AT 13.29 13.29 13.00 13.00 12.89 13.67 13.67 14.47 13.59 13.67 13.06 12.79 12.51 12.59 13.05 12.62 12.55 12.48 12.27 12.27 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 66 N 66 2.000 4 0.238 0.238 2.692 75.476 37.738 LGA L 67 L 67 2.991 4 0.232 0.232 3.346 57.500 28.750 LGA Y 68 Y 68 3.663 8 0.120 0.120 3.663 55.714 18.571 LGA L 69 L 69 2.715 4 0.104 0.104 2.715 60.952 30.476 LGA K 70 K 70 2.812 5 0.211 0.211 3.180 61.190 27.196 LGA E 71 E 71 2.431 5 0.071 0.071 2.431 70.833 31.481 LGA F 72 F 72 1.430 7 0.336 0.336 2.348 77.262 28.095 LGA Y 73 Y 73 1.709 8 0.048 0.048 2.584 71.071 23.690 LGA T 74 T 74 2.137 3 0.132 0.132 2.774 62.976 35.986 LGA P 75 P 75 3.249 3 0.269 0.269 3.249 51.786 29.592 LGA Y 76 Y 76 3.129 8 0.668 0.668 4.412 48.571 16.190 LGA P 77 P 77 1.846 3 0.524 0.524 2.328 70.952 40.544 LGA N 78 N 78 6.199 4 0.120 0.120 8.851 18.333 9.167 LGA T 79 T 79 6.668 3 0.087 0.087 6.668 18.452 10.544 LGA K 80 K 80 4.039 5 0.274 0.274 6.067 33.929 15.079 LGA V 81 V 81 4.683 3 0.055 0.055 4.683 37.381 21.361 LGA I 82 I 82 3.332 4 0.536 0.536 8.010 33.333 16.667 LGA E 83 E 83 9.664 5 0.614 0.614 11.263 3.452 1.534 LGA L 84 L 84 13.180 4 0.610 0.610 16.039 0.000 0.000 LGA R 92 R 92 21.937 7 0.025 0.025 21.937 0.000 0.000 LGA A 93 A 93 24.342 1 0.065 0.065 26.163 0.000 0.000 LGA P 94 P 94 19.643 3 0.083 0.083 21.080 0.000 0.000 LGA I 95 I 95 18.984 4 0.537 0.537 19.297 0.000 0.000 LGA D 96 D 96 16.682 4 0.130 0.130 17.195 0.000 0.000 LGA Q 97 Q 97 12.267 5 0.621 0.621 14.003 0.000 0.000 LGA A 98 A 98 9.963 1 0.650 0.650 10.663 5.238 4.190 LGA E 99 E 99 7.559 5 0.026 0.026 8.023 18.690 8.307 LGA I 100 I 100 1.171 4 0.563 0.563 4.356 56.429 28.214 LGA R 101 R 101 6.149 7 0.027 0.027 10.450 17.976 6.537 LGA K 102 K 102 11.063 5 0.043 0.043 13.663 1.190 0.529 LGA Y 103 Y 103 9.789 8 0.049 0.049 11.994 0.238 0.079 LGA N 104 N 104 11.031 4 0.036 0.036 15.797 0.357 0.179 LGA Q 105 Q 105 16.926 5 0.035 0.035 20.928 0.000 0.000 LGA I 106 I 106 19.464 4 0.033 0.033 22.094 0.000 0.000 LGA L 107 L 107 18.186 4 0.027 0.027 22.141 0.000 0.000 LGA A 108 A 108 22.658 1 0.021 0.021 27.405 0.000 0.000 LGA A 114 A 114 24.487 1 0.084 0.084 24.487 0.000 0.000 LGA F 115 F 115 21.391 7 0.043 0.043 22.348 0.000 0.000 LGA I 116 I 116 19.113 4 0.027 0.027 20.148 0.000 0.000 LGA N 117 N 117 22.790 4 0.062 0.062 23.771 0.000 0.000 LGA A 118 A 118 23.978 1 0.036 0.036 23.978 0.000 0.000 LGA L 119 L 119 20.650 4 0.033 0.033 21.606 0.000 0.000 LGA V 120 V 120 20.829 3 0.052 0.052 22.469 0.000 0.000 LGA N 121 N 121 25.633 4 0.200 0.200 26.932 0.000 0.000 LGA S 122 S 122 24.879 2 0.222 0.222 25.696 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 372 180 48.39 71 SUMMARY(RMSD_GDC): 10.742 10.767 10.767 14.215 6.630 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 71 4.0 15 2.70 22.183 19.724 0.535 LGA_LOCAL RMSD: 2.703 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.474 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 10.742 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.473229 * X + -0.834492 * Y + 0.282273 * Z + 77.447968 Y_new = 0.567118 * X + 0.043391 * Y + -0.822493 * Z + -13.758294 Z_new = 0.674115 * X + 0.549310 * Y + 0.493789 * Z + -72.574516 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.875402 -0.739766 0.838574 [DEG: 50.1568 -42.3855 48.0468 ] ZXZ: 0.330597 1.054354 0.887060 [DEG: 18.9418 60.4101 50.8248 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0553AL285_1-D2 REMARK 2: T0553-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0553AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 71 4.0 15 2.70 19.724 10.74 REMARK ---------------------------------------------------------- MOLECULE T0553AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1r22A ATOM 193 N ASN 66 -0.873 -9.474 3.963 1.00 0.00 N ATOM 194 CA ASN 66 -2.078 -8.962 4.595 1.00 0.00 C ATOM 195 C ASN 66 -1.925 -9.035 6.081 1.00 0.00 C ATOM 196 O ASN 66 -1.979 -8.040 6.783 1.00 0.00 O ATOM 197 N LEU 67 -1.718 -10.243 6.570 1.00 0.00 N ATOM 198 CA LEU 67 -1.542 -10.438 8.002 1.00 0.00 C ATOM 199 C LEU 67 -0.329 -9.653 8.600 1.00 0.00 C ATOM 200 O LEU 67 -0.147 -9.657 9.813 1.00 0.00 O ATOM 201 N TYR 68 0.493 -8.993 7.772 1.00 0.00 N ATOM 202 CA TYR 68 1.576 -8.154 8.302 1.00 0.00 C ATOM 203 C TYR 68 1.360 -6.634 8.145 1.00 0.00 C ATOM 204 O TYR 68 1.901 -5.868 8.949 1.00 0.00 O ATOM 205 N LEU 69 0.627 -6.177 7.130 1.00 0.00 N ATOM 206 CA LEU 69 0.258 -4.753 7.098 1.00 0.00 C ATOM 207 C LEU 69 -0.684 -4.555 8.264 1.00 0.00 C ATOM 208 O LEU 69 -0.601 -3.563 8.986 1.00 0.00 O ATOM 209 N LYS 70 -1.559 -5.547 8.440 1.00 0.00 N ATOM 210 CA LYS 70 -2.554 -5.555 9.505 1.00 0.00 C ATOM 211 C LYS 70 -1.939 -5.855 10.867 1.00 0.00 C ATOM 212 O LYS 70 -2.651 -5.983 11.850 1.00 0.00 O ATOM 213 N GLU 71 -0.624 -5.979 10.940 1.00 0.00 N ATOM 214 CA GLU 71 0.064 -5.997 12.223 1.00 0.00 C ATOM 215 C GLU 71 0.593 -4.627 12.547 1.00 0.00 C ATOM 216 O GLU 71 0.583 -4.207 13.703 1.00 0.00 O ATOM 217 N PHE 72 1.074 -3.938 11.520 1.00 0.00 N ATOM 218 CA PHE 72 1.719 -2.646 11.717 1.00 0.00 C ATOM 219 C PHE 72 0.675 -1.547 11.868 1.00 0.00 C ATOM 220 O PHE 72 0.862 -0.589 12.635 1.00 0.00 O ATOM 221 N TYR 73 -0.424 -1.692 11.137 1.00 0.00 N ATOM 222 CA TYR 73 -1.469 -0.692 11.147 1.00 0.00 C ATOM 223 C TYR 73 -2.155 -0.733 12.494 1.00 0.00 C ATOM 224 O TYR 73 -2.226 0.292 13.195 1.00 0.00 O ATOM 225 N THR 74 -2.638 -1.925 12.840 1.00 0.00 N ATOM 226 CA THR 74 -3.123 -2.264 14.188 1.00 0.00 C ATOM 227 C THR 74 -2.119 -1.934 15.322 1.00 0.00 C ATOM 228 O THR 74 -2.458 -1.995 16.505 1.00 0.00 O ATOM 229 N PRO 75 -0.877 -1.648 14.971 1.00 0.00 N ATOM 230 CA PRO 75 -0.001 -1.022 15.918 1.00 0.00 C ATOM 231 C PRO 75 -0.242 0.483 15.911 1.00 0.00 C ATOM 232 O PRO 75 -0.501 1.059 16.955 1.00 0.00 O ATOM 233 N TYR 76 -0.213 1.098 14.726 1.00 0.00 N ATOM 234 CA TYR 76 -0.268 2.559 14.592 1.00 0.00 C ATOM 235 C TYR 76 -1.601 3.149 15.006 1.00 0.00 C ATOM 236 O TYR 76 -1.717 4.352 15.173 1.00 0.00 O ATOM 237 N PRO 77 -2.605 2.284 15.118 1.00 0.00 N ATOM 238 CA PRO 77 -3.946 2.689 15.470 1.00 0.00 C ATOM 239 C PRO 77 -3.853 3.048 16.937 1.00 0.00 C ATOM 240 O PRO 77 -4.074 4.203 17.293 1.00 0.00 O ATOM 241 N ASN 78 -3.426 2.097 17.789 1.00 0.00 N ATOM 242 CA ASN 78 -3.352 2.365 19.248 1.00 0.00 C ATOM 243 C ASN 78 -2.381 3.500 19.607 1.00 0.00 C ATOM 244 O ASN 78 -2.430 4.073 20.731 1.00 0.00 O ATOM 245 N THR 79 -1.549 3.861 18.626 1.00 0.00 N ATOM 246 CA THR 79 -0.587 4.975 18.793 1.00 0.00 C ATOM 247 C THR 79 -1.172 6.354 18.412 1.00 0.00 C ATOM 248 O THR 79 -0.685 7.398 18.830 1.00 0.00 O ATOM 249 N LYS 80 -2.239 6.331 17.627 1.00 0.00 N ATOM 250 CA LYS 80 -3.056 7.508 17.305 1.00 0.00 C ATOM 251 C LYS 80 -2.578 8.223 16.068 1.00 0.00 C ATOM 252 O LYS 80 -2.828 9.382 15.847 1.00 0.00 O ATOM 253 N VAL 81 -1.936 7.437 15.212 1.00 0.00 N ATOM 254 CA VAL 81 -1.423 7.928 13.972 1.00 0.00 C ATOM 255 C VAL 81 -2.377 7.600 12.871 1.00 0.00 C ATOM 256 O VAL 81 -2.564 8.389 11.962 1.00 0.00 O ATOM 257 N ILE 82 -2.957 6.419 12.951 1.00 0.00 N ATOM 258 CA ILE 82 -3.988 6.032 12.015 1.00 0.00 C ATOM 259 C ILE 82 -5.326 5.592 12.607 1.00 0.00 C ATOM 260 O ILE 82 -5.394 5.093 13.707 1.00 0.00 O ATOM 261 N GLU 83 -6.390 5.750 11.828 1.00 0.00 N ATOM 262 CA GLU 83 -7.690 5.242 12.208 1.00 0.00 C ATOM 263 C GLU 83 -8.237 4.317 11.105 1.00 0.00 C ATOM 264 O GLU 83 -7.776 4.391 9.996 1.00 0.00 O ATOM 265 N LEU 84 -9.260 3.506 11.449 1.00 0.00 N ATOM 266 CA LEU 84 -9.927 2.541 10.534 1.00 0.00 C ATOM 267 C LEU 84 -11.435 2.358 10.690 1.00 0.00 C ATOM 268 O LEU 84 -11.961 2.462 11.783 1.00 0.00 O ATOM 269 N ARG 92 -12.083 2.041 9.565 1.00 0.00 N ATOM 270 CA ARG 92 -13.505 1.635 9.457 1.00 0.00 C ATOM 271 C ARG 92 -13.534 0.120 9.107 1.00 0.00 C ATOM 272 O ARG 92 -12.599 -0.484 8.607 1.00 0.00 O ATOM 273 N ALA 93 -13.057 -6.060 4.360 1.00 0.00 N ATOM 274 CA ALA 93 -11.787 -5.259 4.701 1.00 0.00 C ATOM 275 C ALA 93 -12.085 -3.941 5.384 1.00 0.00 C ATOM 276 O ALA 93 -13.138 -3.296 5.245 1.00 0.00 O ATOM 277 N PRO 94 -10.971 -3.494 5.901 1.00 0.00 N ATOM 278 CA PRO 94 -10.814 -2.323 6.689 1.00 0.00 C ATOM 279 C PRO 94 -10.313 -1.208 5.762 1.00 0.00 C ATOM 280 O PRO 94 -9.708 -1.463 4.731 1.00 0.00 O ATOM 281 N ILE 95 -10.600 0.032 6.121 1.00 0.00 N ATOM 282 CA ILE 95 -9.992 1.153 5.466 1.00 0.00 C ATOM 283 C ILE 95 -9.207 1.960 6.486 1.00 0.00 C ATOM 284 O ILE 95 -9.666 2.199 7.611 1.00 0.00 O ATOM 285 N ASP 96 -7.992 2.345 6.087 1.00 0.00 N ATOM 286 CA ASP 96 -7.169 3.222 6.898 1.00 0.00 C ATOM 287 C ASP 96 -6.978 4.583 6.310 1.00 0.00 C ATOM 288 O ASP 96 -6.851 4.773 5.093 1.00 0.00 O ATOM 289 N GLN 97 -6.923 5.520 7.249 1.00 0.00 N ATOM 290 CA GLN 97 -6.545 6.912 7.000 1.00 0.00 C ATOM 291 C GLN 97 -5.584 7.436 8.093 1.00 0.00 C ATOM 292 O GLN 97 -5.445 6.858 9.203 1.00 0.00 O ATOM 293 N ALA 98 -4.956 8.568 7.788 1.00 0.00 N ATOM 294 CA ALA 98 -4.306 9.386 8.819 1.00 0.00 C ATOM 295 C ALA 98 -5.422 9.840 9.803 1.00 0.00 C ATOM 296 O ALA 98 -6.466 10.271 9.371 1.00 0.00 O ATOM 297 N GLU 99 -5.176 9.677 11.111 1.00 0.00 N ATOM 298 CA GLU 99 -6.148 9.877 12.184 1.00 0.00 C ATOM 299 C GLU 99 -6.943 11.182 12.024 1.00 0.00 C ATOM 300 O GLU 99 -8.148 11.180 12.129 1.00 0.00 O ATOM 301 N ILE 100 -6.241 12.280 11.737 1.00 0.00 N ATOM 302 CA ILE 100 -6.834 13.605 11.593 1.00 0.00 C ATOM 303 C ILE 100 -5.853 14.562 11.059 1.00 0.00 C ATOM 304 O ILE 100 -4.725 14.175 10.773 1.00 0.00 O ATOM 305 N ARG 101 -6.322 15.796 10.890 1.00 0.00 N ATOM 306 CA ARG 101 -5.570 16.928 10.361 1.00 0.00 C ATOM 307 C ARG 101 -4.177 17.174 11.086 1.00 0.00 C ATOM 308 O ARG 101 -3.248 17.582 10.426 1.00 0.00 O ATOM 309 N LYS 102 -3.995 16.835 12.365 1.00 0.00 N ATOM 310 CA LYS 102 -2.660 17.020 13.020 1.00 0.00 C ATOM 311 C LYS 102 -1.637 16.088 12.441 1.00 0.00 C ATOM 312 O LYS 102 -0.493 16.486 12.113 1.00 0.00 O ATOM 313 N TYR 103 -2.054 14.829 12.334 1.00 0.00 N ATOM 314 CA TYR 103 -1.243 13.854 11.631 1.00 0.00 C ATOM 315 C TYR 103 -0.890 14.234 10.192 1.00 0.00 C ATOM 316 O TYR 103 0.298 14.102 9.775 1.00 0.00 O ATOM 317 N ASN 104 -1.857 14.724 9.426 1.00 0.00 N ATOM 318 CA ASN 104 -1.577 15.091 8.021 1.00 0.00 C ATOM 319 C ASN 104 -0.490 16.197 8.008 1.00 0.00 C ATOM 320 O ASN 104 0.498 16.113 7.247 1.00 0.00 O ATOM 321 N GLN 105 -0.689 17.206 8.871 1.00 0.00 N ATOM 322 CA GLN 105 0.090 18.474 8.887 1.00 0.00 C ATOM 323 C GLN 105 1.528 18.145 9.283 1.00 0.00 C ATOM 324 O GLN 105 2.466 18.608 8.685 1.00 0.00 O ATOM 325 N ILE 106 1.625 17.282 10.278 1.00 0.00 N ATOM 326 CA ILE 106 2.838 16.776 10.891 1.00 0.00 C ATOM 327 C ILE 106 3.653 15.962 9.871 1.00 0.00 C ATOM 328 O ILE 106 4.831 16.187 9.670 1.00 0.00 O ATOM 329 N LEU 107 3.029 14.972 9.269 1.00 0.00 N ATOM 330 CA LEU 107 3.726 14.293 8.202 1.00 0.00 C ATOM 331 C LEU 107 4.224 15.188 7.032 1.00 0.00 C ATOM 332 O LEU 107 5.355 15.016 6.515 1.00 0.00 O ATOM 333 N ALA 108 3.403 16.082 6.567 1.00 0.00 N ATOM 334 CA ALA 108 3.744 16.929 5.405 1.00 0.00 C ATOM 335 C ALA 108 4.841 17.971 5.681 1.00 0.00 C ATOM 336 O ALA 108 5.802 18.177 4.908 1.00 0.00 O ATOM 337 N ALA 114 4.736 18.596 6.833 1.00 0.00 N ATOM 338 CA ALA 114 5.727 19.580 7.241 1.00 0.00 C ATOM 339 C ALA 114 7.105 18.942 7.425 1.00 0.00 C ATOM 340 O ALA 114 8.115 19.463 6.941 1.00 0.00 O ATOM 341 N PHE 115 7.113 17.767 8.061 1.00 0.00 N ATOM 342 CA PHE 115 8.329 17.043 8.242 1.00 0.00 C ATOM 343 C PHE 115 8.967 16.705 6.925 1.00 0.00 C ATOM 344 O PHE 115 10.160 16.956 6.703 1.00 0.00 O ATOM 345 N ILE 116 8.175 16.161 6.065 1.00 0.00 N ATOM 346 CA ILE 116 8.679 15.698 4.766 1.00 0.00 C ATOM 347 C ILE 116 9.018 16.880 3.830 1.00 0.00 C ATOM 348 O ILE 116 10.095 16.863 3.239 1.00 0.00 O ATOM 349 N ASN 117 8.190 17.942 3.784 1.00 0.00 N ATOM 350 CA ASN 117 8.642 19.191 3.058 1.00 0.00 C ATOM 351 C ASN 117 9.929 19.815 3.632 1.00 0.00 C ATOM 352 O ASN 117 10.846 20.142 2.897 1.00 0.00 O ATOM 353 N ALA 118 10.034 19.909 4.967 1.00 0.00 N ATOM 354 CA ALA 118 11.263 20.509 5.544 1.00 0.00 C ATOM 355 C ALA 118 12.509 19.669 5.163 1.00 0.00 C ATOM 356 O ALA 118 13.513 20.214 4.759 1.00 0.00 O ATOM 357 N LEU 119 12.408 18.351 5.233 1.00 0.00 N ATOM 358 CA LEU 119 13.541 17.466 4.875 1.00 0.00 C ATOM 359 C LEU 119 13.904 17.606 3.410 1.00 0.00 C ATOM 360 O LEU 119 15.050 17.468 2.997 1.00 0.00 O ATOM 361 N VAL 120 12.922 17.970 2.630 1.00 0.00 N ATOM 362 CA VAL 120 13.115 18.095 1.194 1.00 0.00 C ATOM 363 C VAL 120 13.901 19.338 0.810 1.00 0.00 C ATOM 364 O VAL 120 14.527 19.344 -0.173 1.00 0.00 O ATOM 365 N ASN 121 13.820 20.386 1.609 1.00 0.00 N ATOM 366 CA ASN 121 14.575 21.627 1.406 1.00 0.00 C ATOM 367 C ASN 121 16.038 21.305 1.220 1.00 0.00 C ATOM 368 O ASN 121 16.717 21.982 0.502 1.00 0.00 O ATOM 369 N SER 122 16.527 20.303 1.936 1.00 0.00 N ATOM 370 CA SER 122 17.854 19.760 1.717 1.00 0.00 C ATOM 371 C SER 122 18.988 20.809 1.918 1.00 0.00 C ATOM 372 O SER 122 18.816 21.948 2.466 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 180 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 62.57 61.9 84 60.0 140 ARMSMC SECONDARY STRUCTURE . . 56.88 70.5 61 66.3 92 ARMSMC SURFACE . . . . . . . . 64.16 60.0 60 61.2 98 ARMSMC BURIED . . . . . . . . 58.41 66.7 24 57.1 42 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 62 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 58 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 41 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 39 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 35 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.74 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.74 45 63.4 71 CRMSCA CRN = ALL/NP . . . . . 0.2387 CRMSCA SECONDARY STRUCTURE . . 8.42 32 69.6 46 CRMSCA SURFACE . . . . . . . . 11.11 32 64.0 50 CRMSCA BURIED . . . . . . . . 9.76 13 61.9 21 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.77 180 51.3 351 CRMSMC SECONDARY STRUCTURE . . 8.50 128 55.9 229 CRMSMC SURFACE . . . . . . . . 11.02 128 51.6 248 CRMSMC BURIED . . . . . . . . 10.13 52 50.5 103 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 873 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 829 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 602 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 614 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 259 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.77 180 15.6 1157 CRMSALL SECONDARY STRUCTURE . . 8.50 128 16.3 786 CRMSALL SURFACE . . . . . . . . 11.02 128 15.7 814 CRMSALL BURIED . . . . . . . . 10.13 52 15.2 343 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.546 1.000 0.500 45 63.4 71 ERRCA SECONDARY STRUCTURE . . 7.802 1.000 0.500 32 69.6 46 ERRCA SURFACE . . . . . . . . 9.995 1.000 0.500 32 64.0 50 ERRCA BURIED . . . . . . . . 8.441 1.000 0.500 13 61.9 21 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.585 1.000 0.500 180 51.3 351 ERRMC SECONDARY STRUCTURE . . 7.845 1.000 0.500 128 55.9 229 ERRMC SURFACE . . . . . . . . 9.919 1.000 0.500 128 51.6 248 ERRMC BURIED . . . . . . . . 8.765 1.000 0.500 52 50.5 103 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 873 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 829 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 602 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 614 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 259 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.585 1.000 0.500 180 15.6 1157 ERRALL SECONDARY STRUCTURE . . 7.845 1.000 0.500 128 16.3 786 ERRALL SURFACE . . . . . . . . 9.919 1.000 0.500 128 15.7 814 ERRALL BURIED . . . . . . . . 8.765 1.000 0.500 52 15.2 343 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 4 8 26 45 71 DISTCA CA (P) 0.00 2.82 5.63 11.27 36.62 71 DISTCA CA (RMS) 0.00 1.40 2.05 3.43 6.94 DISTCA ALL (N) 0 6 13 28 107 180 1157 DISTALL ALL (P) 0.00 0.52 1.12 2.42 9.25 1157 DISTALL ALL (RMS) 0.00 1.65 2.17 3.27 6.97 DISTALL END of the results output