####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 48 ( 192), selected 48 , name T0553AL285_1-D1 # Molecule2: number of CA atoms 63 ( 1002), selected 48 , name T0553-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0553AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 31 - 65 4.80 14.26 LCS_AVERAGE: 47.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 37 - 52 2.00 11.82 LONGEST_CONTINUOUS_SEGMENT: 16 38 - 53 1.89 12.05 LCS_AVERAGE: 18.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 52 - 63 0.52 17.80 LCS_AVERAGE: 13.79 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 48 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 16 I 16 3 3 17 0 3 3 3 3 3 4 7 7 14 15 15 16 17 17 17 18 18 19 19 LCS_GDT K 17 K 17 3 3 17 0 3 3 3 4 9 11 12 13 14 15 15 16 17 17 17 18 18 19 19 LCS_GDT T 18 T 18 3 4 17 0 3 3 3 4 6 7 10 13 14 15 15 16 17 17 17 18 19 22 23 LCS_GDT L 19 L 19 3 11 17 3 3 3 3 7 9 11 12 13 14 15 15 16 17 17 17 20 21 24 24 LCS_GDT I 20 I 20 10 11 17 8 8 9 10 10 10 10 12 13 14 15 15 16 17 17 17 18 19 19 20 LCS_GDT S 21 S 21 10 11 17 8 8 9 10 10 10 11 12 13 14 15 15 16 17 17 17 18 19 22 23 LCS_GDT A 22 A 22 10 11 17 8 8 9 10 10 10 11 12 13 14 15 15 16 17 17 20 22 26 29 30 LCS_GDT A 23 A 23 10 11 29 8 8 9 10 10 10 11 12 13 14 15 15 16 17 20 24 27 28 29 30 LCS_GDT Y 24 Y 24 10 11 29 8 8 9 10 10 10 11 12 13 14 15 15 16 17 20 24 27 28 29 30 LCS_GDT R 25 R 25 10 11 29 8 8 9 10 10 10 11 12 16 19 21 23 25 26 26 27 27 28 29 30 LCS_GDT Q 26 Q 26 10 11 29 8 8 9 10 10 10 13 17 20 21 22 23 25 26 26 27 27 28 29 30 LCS_GDT I 27 I 27 10 11 29 8 8 9 10 10 10 11 12 13 14 20 23 25 26 26 27 27 28 29 30 LCS_GDT F 28 F 28 10 11 29 3 4 9 10 10 10 11 12 13 14 15 23 25 26 26 27 27 28 29 30 LCS_GDT E 29 E 29 10 11 29 3 4 6 10 12 14 19 20 21 21 22 23 25 26 27 28 29 31 32 33 LCS_GDT R 30 R 30 3 4 30 3 3 3 4 5 7 18 20 21 21 22 23 25 26 27 28 30 32 32 33 LCS_GDT D 31 D 31 3 4 33 3 3 3 4 4 16 19 20 21 21 22 24 25 26 28 30 31 32 32 33 LCS_GDT I 32 I 32 4 6 33 3 6 11 14 15 16 19 20 21 24 25 26 29 30 31 31 32 32 32 33 LCS_GDT A 33 A 33 4 6 33 0 4 5 6 15 16 20 22 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT I 36 I 36 4 6 33 3 4 5 6 6 6 8 9 23 24 27 29 30 30 31 31 32 32 32 33 LCS_GDT A 37 A 37 4 16 33 3 4 5 9 15 16 19 20 23 24 27 29 30 30 31 31 32 32 32 33 LCS_GDT Q 38 Q 38 4 16 33 3 4 5 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT N 39 N 39 4 16 33 3 4 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT E 40 E 40 4 16 33 3 4 6 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT F 41 F 41 11 16 33 9 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT S 42 S 42 11 16 33 9 10 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT G 43 G 43 11 16 33 9 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT W 44 W 44 11 16 33 9 10 12 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT E 45 E 45 11 16 33 9 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT S 46 S 46 11 16 33 9 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT K 47 K 47 11 16 33 9 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT L 48 L 48 11 16 33 9 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT G 49 G 49 11 16 33 9 10 12 14 15 16 20 22 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT N 50 N 50 11 16 33 6 10 12 14 15 18 20 22 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT G 51 G 51 11 16 33 4 10 12 14 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT E 52 E 52 12 16 33 7 12 13 16 16 16 19 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT I 53 I 53 12 16 33 8 12 13 16 16 17 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT T 54 T 54 12 13 33 9 12 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT V 55 V 55 12 13 33 9 12 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT K 56 K 56 12 13 33 9 12 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT E 57 E 57 12 13 33 9 12 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT F 58 F 58 12 13 33 9 12 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT I 59 I 59 12 13 33 9 12 13 16 16 17 19 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT E 60 E 60 12 13 33 9 12 13 16 16 17 19 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT G 61 G 61 12 13 33 9 12 13 16 16 17 19 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT L 62 L 62 12 13 33 9 12 12 16 16 17 19 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT G 63 G 63 12 13 33 4 12 13 16 16 17 19 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT Y 64 Y 64 3 4 33 3 3 4 10 15 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 LCS_GDT S 65 S 65 3 4 33 0 3 4 4 4 4 7 10 13 16 19 23 25 29 30 31 32 32 32 33 LCS_AVERAGE LCS_A: 26.73 ( 13.79 18.75 47.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 13 16 16 18 20 23 25 26 28 29 30 30 31 31 32 32 32 33 GDT PERCENT_AT 14.29 19.05 20.63 25.40 25.40 28.57 31.75 36.51 39.68 41.27 44.44 46.03 47.62 47.62 49.21 49.21 50.79 50.79 50.79 52.38 GDT RMS_LOCAL 0.30 0.52 0.90 1.17 1.17 2.06 2.21 2.58 2.83 3.03 3.39 3.54 3.69 3.69 4.03 3.92 4.25 4.25 4.25 4.80 GDT RMS_ALL_AT 17.75 17.80 18.80 19.05 19.05 15.70 15.26 17.90 17.29 16.55 16.05 15.77 15.58 15.58 15.00 15.54 14.97 14.97 14.97 14.26 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 16 I 16 37.379 4 0.502 0.502 37.994 0.000 0.000 LGA K 17 K 17 33.438 5 0.638 0.638 34.376 0.000 0.000 LGA T 18 T 18 32.161 3 0.639 0.639 34.011 0.000 0.000 LGA L 19 L 19 32.136 4 0.612 0.612 33.930 0.000 0.000 LGA I 20 I 20 31.972 4 0.623 0.623 31.972 0.000 0.000 LGA S 21 S 21 29.596 2 0.046 0.046 30.543 0.000 0.000 LGA A 22 A 22 29.964 1 0.073 0.073 30.298 0.000 0.000 LGA A 23 A 23 31.322 1 0.098 0.098 31.322 0.000 0.000 LGA Y 24 Y 24 30.141 8 0.072 0.072 30.549 0.000 0.000 LGA R 25 R 25 29.164 7 0.155 0.155 29.512 0.000 0.000 LGA Q 26 Q 26 30.078 5 0.067 0.067 30.390 0.000 0.000 LGA I 27 I 27 31.047 4 0.100 0.100 31.047 0.000 0.000 LGA F 28 F 28 28.251 7 0.160 0.160 29.288 0.000 0.000 LGA E 29 E 29 26.276 5 0.089 0.089 27.315 0.000 0.000 LGA R 30 R 30 23.655 7 0.587 0.587 24.933 0.000 0.000 LGA D 31 D 31 20.678 4 0.626 0.626 22.204 0.000 0.000 LGA I 32 I 32 14.912 4 0.593 0.593 17.114 0.000 0.000 LGA A 33 A 33 10.079 1 0.632 0.632 12.000 2.500 2.000 LGA I 36 I 36 9.577 4 0.158 0.158 9.577 4.524 2.262 LGA A 37 A 37 7.989 1 0.385 0.385 7.989 11.429 9.143 LGA Q 38 Q 38 2.117 5 0.627 0.627 3.344 69.524 30.899 LGA N 39 N 39 1.334 4 0.042 0.042 3.028 74.048 37.024 LGA E 40 E 40 2.810 5 0.034 0.034 4.027 54.286 24.127 LGA F 41 F 41 3.717 7 0.322 0.322 3.717 57.738 20.996 LGA S 42 S 42 0.705 2 0.041 0.041 2.397 77.381 51.587 LGA G 43 G 43 3.627 0 0.112 0.112 3.627 53.810 53.810 LGA W 44 W 44 2.362 10 0.100 0.100 2.534 75.714 21.633 LGA E 45 E 45 2.581 5 0.063 0.063 4.571 55.000 24.444 LGA S 46 S 46 5.004 2 0.071 0.071 6.374 29.881 19.921 LGA K 47 K 47 3.598 5 0.150 0.150 4.104 43.452 19.312 LGA L 48 L 48 3.702 4 0.096 0.096 6.012 35.952 17.976 LGA G 49 G 49 7.931 0 0.066 0.066 9.691 7.381 7.381 LGA N 50 N 50 8.222 4 0.036 0.036 8.222 7.262 3.631 LGA G 51 G 51 4.580 0 0.631 0.631 5.559 43.929 43.929 LGA E 52 E 52 3.039 5 0.675 0.675 3.039 61.429 27.302 LGA I 53 I 53 2.622 4 0.090 0.090 2.977 59.048 29.524 LGA T 54 T 54 2.443 3 0.051 0.051 2.480 66.786 38.163 LGA V 55 V 55 1.849 3 0.044 0.044 2.077 72.976 41.701 LGA K 56 K 56 1.513 5 0.146 0.146 1.639 84.048 37.354 LGA E 57 E 57 1.307 5 0.034 0.034 1.307 83.690 37.196 LGA F 58 F 58 0.344 7 0.047 0.047 0.896 95.238 34.632 LGA I 59 I 59 1.046 4 0.038 0.038 1.849 83.929 41.964 LGA E 60 E 60 1.299 5 0.088 0.088 2.425 75.119 33.386 LGA G 61 G 61 2.151 0 0.062 0.062 2.819 64.881 64.881 LGA L 62 L 62 2.950 4 0.153 0.153 2.950 59.048 29.524 LGA G 63 G 63 2.386 0 0.351 0.351 2.760 66.905 66.905 LGA Y 64 Y 64 5.763 8 0.642 0.642 8.890 21.071 7.024 LGA S 65 S 65 9.991 2 0.227 0.227 11.559 1.905 1.270 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 48 192 192 100.00 381 192 50.39 63 SUMMARY(RMSD_GDC): 11.133 10.966 10.966 25.395 13.983 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 48 63 4.0 23 2.58 32.540 29.757 0.859 LGA_LOCAL RMSD: 2.578 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.902 Number of assigned atoms: 48 Std_ASGN_ATOMS RMSD: 11.133 Standard rmsd on all 48 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.449374 * X + 0.617441 * Y + 0.645623 * Z + -77.867889 Y_new = -0.892287 * X + 0.345362 * Y + 0.290774 * Z + -23.472437 Z_new = -0.043438 * X + -0.706747 * Y + 0.706131 * Z + 65.964371 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.104256 0.043451 -0.785834 [DEG: -63.2692 2.4896 -45.0250 ] ZXZ: 1.993964 0.786777 -3.080208 [DEG: 114.2457 45.0790 -176.4829 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0553AL285_1-D1 REMARK 2: T0553-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0553AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 48 63 4.0 23 2.58 29.757 11.13 REMARK ---------------------------------------------------------- MOLECULE T0553AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1r22A ATOM 1 N ILE 16 18.236 -42.660 -22.042 1.00 0.00 N ATOM 2 CA ILE 16 18.306 -41.231 -22.461 1.00 0.00 C ATOM 3 C ILE 16 19.077 -40.350 -21.495 1.00 0.00 C ATOM 4 O ILE 16 19.653 -40.786 -20.489 1.00 0.00 O ATOM 5 N LYS 17 19.064 -39.070 -21.834 1.00 0.00 N ATOM 6 CA LYS 17 19.767 -38.081 -21.050 1.00 0.00 C ATOM 7 C LYS 17 18.813 -37.196 -20.281 1.00 0.00 C ATOM 8 O LYS 17 17.812 -36.721 -20.789 1.00 0.00 O ATOM 9 N THR 18 19.155 -36.984 -19.035 1.00 0.00 N ATOM 10 CA THR 18 18.622 -35.918 -18.200 1.00 0.00 C ATOM 11 C THR 18 19.248 -34.641 -18.631 1.00 0.00 C ATOM 12 O THR 18 20.369 -34.630 -19.106 1.00 0.00 O ATOM 13 N LEU 19 18.590 -33.540 -18.397 1.00 0.00 N ATOM 14 CA LEU 19 19.268 -32.248 -18.580 1.00 0.00 C ATOM 15 C LEU 19 20.512 -32.145 -17.709 1.00 0.00 C ATOM 16 O LEU 19 20.593 -32.737 -16.602 1.00 0.00 O ATOM 17 N ILE 20 21.490 -31.384 -18.225 1.00 0.00 N ATOM 18 CA ILE 20 22.752 -31.128 -17.525 1.00 0.00 C ATOM 19 C ILE 20 22.521 -30.607 -16.120 1.00 0.00 C ATOM 20 O ILE 20 21.684 -29.750 -15.932 1.00 0.00 O ATOM 21 N SER 21 23.325 -31.064 -15.165 1.00 0.00 N ATOM 22 CA SER 21 23.282 -30.519 -13.796 1.00 0.00 C ATOM 23 C SER 21 23.232 -28.962 -13.706 1.00 0.00 C ATOM 24 O SER 21 22.492 -28.496 -12.886 1.00 0.00 O ATOM 25 N ALA 22 24.002 -28.217 -14.492 1.00 0.00 N ATOM 26 CA ALA 22 24.025 -26.738 -14.472 1.00 0.00 C ATOM 27 C ALA 22 22.698 -26.131 -14.910 1.00 0.00 C ATOM 28 O ALA 22 22.297 -25.073 -14.459 1.00 0.00 O ATOM 29 N ALA 23 22.124 -26.752 -15.904 1.00 0.00 N ATOM 30 CA ALA 23 20.790 -26.428 -16.381 1.00 0.00 C ATOM 31 C ALA 23 19.742 -26.694 -15.285 1.00 0.00 C ATOM 32 O ALA 23 18.884 -25.862 -15.021 1.00 0.00 O ATOM 33 N TYR 24 19.884 -27.806 -14.605 1.00 0.00 N ATOM 34 CA TYR 24 19.010 -28.107 -13.496 1.00 0.00 C ATOM 35 C TYR 24 19.128 -27.108 -12.362 1.00 0.00 C ATOM 36 O TYR 24 18.091 -26.775 -11.731 1.00 0.00 O ATOM 37 N ARG 25 20.362 -26.691 -12.050 1.00 0.00 N ATOM 38 CA ARG 25 20.545 -25.836 -10.913 1.00 0.00 C ATOM 39 C ARG 25 19.945 -24.475 -11.255 1.00 0.00 C ATOM 40 O ARG 25 19.343 -23.876 -10.387 1.00 0.00 O ATOM 41 N GLN 26 20.045 -24.017 -12.496 1.00 0.00 N ATOM 42 CA GLN 26 19.494 -22.708 -12.851 1.00 0.00 C ATOM 43 C GLN 26 17.974 -22.780 -12.879 1.00 0.00 C ATOM 44 O GLN 26 17.306 -21.879 -12.424 1.00 0.00 O ATOM 45 N ILE 27 17.443 -23.885 -13.388 1.00 0.00 N ATOM 46 CA ILE 27 15.997 -24.067 -13.461 1.00 0.00 C ATOM 47 C ILE 27 15.428 -24.120 -12.032 1.00 0.00 C ATOM 48 O ILE 27 14.427 -23.435 -11.689 1.00 0.00 O ATOM 49 N PHE 28 16.181 -24.752 -11.160 1.00 0.00 N ATOM 50 CA PHE 28 15.908 -24.751 -9.693 1.00 0.00 C ATOM 51 C PHE 28 15.850 -23.394 -9.100 1.00 0.00 C ATOM 52 O PHE 28 14.947 -23.041 -8.322 1.00 0.00 O ATOM 53 N GLU 29 16.828 -22.608 -9.447 1.00 0.00 N ATOM 54 CA GLU 29 16.833 -21.193 -8.926 1.00 0.00 C ATOM 55 C GLU 29 15.673 -20.369 -9.371 1.00 0.00 C ATOM 56 O GLU 29 15.197 -19.505 -8.612 1.00 0.00 O ATOM 57 N ARG 30 15.177 -20.697 -10.562 1.00 0.00 N ATOM 58 CA ARG 30 14.041 -19.979 -11.138 1.00 0.00 C ATOM 59 C ARG 30 12.684 -20.381 -10.483 1.00 0.00 C ATOM 60 O ARG 30 11.864 -19.510 -10.126 1.00 0.00 O ATOM 61 N ASP 31 12.461 -21.668 -10.267 1.00 0.00 N ATOM 62 CA ASP 31 11.344 -22.124 -9.437 1.00 0.00 C ATOM 63 C ASP 31 11.350 -21.631 -7.980 1.00 0.00 C ATOM 64 O ASP 31 10.290 -21.221 -7.504 1.00 0.00 O ATOM 65 N ILE 32 12.532 -21.632 -7.326 1.00 0.00 N ATOM 66 CA ILE 32 12.738 -21.004 -5.986 1.00 0.00 C ATOM 67 C ILE 32 12.166 -19.593 -5.848 1.00 0.00 C ATOM 68 O ILE 32 11.426 -19.359 -4.935 1.00 0.00 O ATOM 69 N ALA 33 12.428 -18.711 -6.787 1.00 0.00 N ATOM 70 CA ALA 33 11.803 -17.388 -6.742 1.00 0.00 C ATOM 71 C ALA 33 10.268 -17.454 -6.798 1.00 0.00 C ATOM 72 O ALA 33 9.587 -16.654 -6.190 1.00 0.00 O ATOM 73 N ILE 36 9.715 -18.410 -7.532 1.00 0.00 N ATOM 74 CA ILE 36 8.273 -18.605 -7.506 1.00 0.00 C ATOM 75 C ILE 36 7.695 -19.153 -6.183 1.00 0.00 C ATOM 76 O ILE 36 6.482 -19.042 -5.922 1.00 0.00 O ATOM 77 N ALA 37 8.577 -19.709 -5.334 1.00 0.00 N ATOM 78 CA ALA 37 8.183 -20.345 -4.079 1.00 0.00 C ATOM 79 C ALA 37 8.006 -19.319 -2.946 1.00 0.00 C ATOM 80 O ALA 37 8.473 -19.490 -1.848 1.00 0.00 O ATOM 81 N GLN 38 7.276 -18.248 -3.238 1.00 0.00 N ATOM 82 CA GLN 38 7.019 -17.161 -2.313 1.00 0.00 C ATOM 83 C GLN 38 5.616 -16.659 -2.576 1.00 0.00 C ATOM 84 O GLN 38 5.264 -16.212 -3.670 1.00 0.00 O ATOM 85 N ASN 39 4.786 -16.784 -1.572 1.00 0.00 N ATOM 86 CA ASN 39 3.372 -16.424 -1.736 1.00 0.00 C ATOM 87 C ASN 39 3.113 -14.939 -2.095 1.00 0.00 C ATOM 88 O ASN 39 2.178 -14.691 -2.864 1.00 0.00 O ATOM 89 N GLU 40 3.930 -14.014 -1.622 1.00 0.00 N ATOM 90 CA GLU 40 3.739 -12.591 -1.923 1.00 0.00 C ATOM 91 C GLU 40 4.057 -12.333 -3.395 1.00 0.00 C ATOM 92 O GLU 40 3.237 -11.752 -4.101 1.00 0.00 O ATOM 93 N PHE 41 5.189 -12.852 -3.887 1.00 0.00 N ATOM 94 CA PHE 41 5.433 -12.786 -5.319 1.00 0.00 C ATOM 95 C PHE 41 4.270 -13.350 -6.181 1.00 0.00 C ATOM 96 O PHE 41 3.819 -12.735 -7.213 1.00 0.00 O ATOM 97 N SER 42 3.777 -14.491 -5.759 1.00 0.00 N ATOM 98 CA SER 42 2.761 -15.139 -6.504 1.00 0.00 C ATOM 99 C SER 42 1.452 -14.281 -6.565 1.00 0.00 C ATOM 100 O SER 42 0.695 -14.337 -7.519 1.00 0.00 O ATOM 101 N GLY 43 1.212 -13.508 -5.530 1.00 0.00 N ATOM 102 CA GLY 43 0.065 -12.603 -5.450 1.00 0.00 C ATOM 103 C GLY 43 0.181 -11.502 -6.495 1.00 0.00 C ATOM 104 O GLY 43 -0.786 -11.250 -7.234 1.00 0.00 O ATOM 105 N TRP 44 1.349 -10.898 -6.595 1.00 0.00 N ATOM 106 CA TRP 44 1.602 -9.896 -7.642 1.00 0.00 C ATOM 107 C TRP 44 1.380 -10.458 -8.991 1.00 0.00 C ATOM 108 O TRP 44 0.695 -9.850 -9.802 1.00 0.00 O ATOM 109 N GLU 45 1.974 -11.625 -9.254 1.00 0.00 N ATOM 110 CA GLU 45 1.823 -12.284 -10.524 1.00 0.00 C ATOM 111 C GLU 45 0.408 -12.670 -10.839 1.00 0.00 C ATOM 112 O GLU 45 0.070 -12.752 -12.032 1.00 0.00 O ATOM 113 N SER 46 -0.419 -12.988 -9.822 1.00 0.00 N ATOM 114 CA SER 46 -1.840 -13.279 -10.105 1.00 0.00 C ATOM 115 C SER 46 -2.512 -12.046 -10.705 1.00 0.00 C ATOM 116 O SER 46 -3.443 -12.156 -11.419 1.00 0.00 O ATOM 117 N LYS 47 -2.076 -10.878 -10.323 1.00 0.00 N ATOM 118 CA LYS 47 -2.625 -9.616 -10.830 1.00 0.00 C ATOM 119 C LYS 47 -2.100 -9.390 -12.249 1.00 0.00 C ATOM 120 O LYS 47 -2.890 -9.341 -13.176 1.00 0.00 O ATOM 121 N LEU 48 -0.775 -9.364 -12.424 1.00 0.00 N ATOM 122 CA LEU 48 -0.211 -9.242 -13.750 1.00 0.00 C ATOM 123 C LEU 48 -0.721 -10.263 -14.704 1.00 0.00 C ATOM 124 O LEU 48 -0.754 -10.003 -15.869 1.00 0.00 O ATOM 125 N GLY 49 -1.205 -11.396 -14.232 1.00 0.00 N ATOM 126 CA GLY 49 -1.748 -12.424 -15.155 1.00 0.00 C ATOM 127 C GLY 49 -2.998 -11.987 -15.951 1.00 0.00 C ATOM 128 O GLY 49 -3.295 -12.530 -17.037 1.00 0.00 O ATOM 129 N ASN 50 -3.762 -11.075 -15.384 1.00 0.00 N ATOM 130 CA ASN 50 -5.013 -10.610 -16.020 1.00 0.00 C ATOM 131 C ASN 50 -4.758 -9.341 -16.851 1.00 0.00 C ATOM 132 O ASN 50 -5.504 -9.080 -17.770 1.00 0.00 O ATOM 133 N GLY 51 -3.730 -8.551 -16.527 1.00 0.00 N ATOM 134 CA GLY 51 -3.389 -7.376 -17.347 1.00 0.00 C ATOM 135 C GLY 51 -2.083 -6.739 -16.927 1.00 0.00 C ATOM 136 O GLY 51 -1.615 -6.945 -15.832 1.00 0.00 O ATOM 137 N GLU 52 -1.513 -5.909 -17.775 1.00 0.00 N ATOM 138 CA GLU 52 -0.450 -5.033 -17.315 1.00 0.00 C ATOM 139 C GLU 52 -1.057 -3.973 -16.374 1.00 0.00 C ATOM 140 O GLU 52 -2.253 -3.662 -16.476 1.00 0.00 O ATOM 141 N ILE 53 -0.253 -3.446 -15.450 1.00 0.00 N ATOM 142 CA ILE 53 -0.758 -2.598 -14.385 1.00 0.00 C ATOM 143 C ILE 53 0.369 -1.719 -13.906 1.00 0.00 C ATOM 144 O ILE 53 1.519 -2.148 -13.900 1.00 0.00 O ATOM 145 N THR 54 0.043 -0.530 -13.411 1.00 0.00 N ATOM 146 CA THR 54 1.061 0.382 -12.875 1.00 0.00 C ATOM 147 C THR 54 1.609 -0.064 -11.515 1.00 0.00 C ATOM 148 O THR 54 0.977 -0.836 -10.817 1.00 0.00 O ATOM 149 N VAL 55 2.779 0.441 -11.157 1.00 0.00 N ATOM 150 CA VAL 55 3.330 0.354 -9.801 1.00 0.00 C ATOM 151 C VAL 55 2.352 0.617 -8.634 1.00 0.00 C ATOM 152 O VAL 55 2.409 -0.078 -7.620 1.00 0.00 O ATOM 153 N LYS 56 1.490 1.616 -8.780 1.00 0.00 N ATOM 154 CA LYS 56 0.433 1.952 -7.817 1.00 0.00 C ATOM 155 C LYS 56 -0.914 1.217 -7.953 1.00 0.00 C ATOM 156 O LYS 56 -1.658 1.091 -7.014 1.00 0.00 O ATOM 157 N GLU 57 -1.248 0.713 -9.114 1.00 0.00 N ATOM 158 CA GLU 57 -2.439 -0.126 -9.173 1.00 0.00 C ATOM 159 C GLU 57 -2.199 -1.443 -8.410 1.00 0.00 C ATOM 160 O GLU 57 -3.111 -1.939 -7.800 1.00 0.00 O ATOM 161 N PHE 58 -0.947 -1.930 -8.389 1.00 0.00 N ATOM 162 CA PHE 58 -0.569 -3.228 -7.804 1.00 0.00 C ATOM 163 C PHE 58 -0.551 -3.120 -6.300 1.00 0.00 C ATOM 164 O PHE 58 -1.018 -4.008 -5.593 1.00 0.00 O ATOM 165 N ILE 59 0.064 -2.050 -5.829 1.00 0.00 N ATOM 166 CA ILE 59 0.056 -1.686 -4.419 1.00 0.00 C ATOM 167 C ILE 59 -1.376 -1.549 -3.894 1.00 0.00 C ATOM 168 O ILE 59 -1.673 -2.006 -2.801 1.00 0.00 O ATOM 169 N GLU 60 -2.282 -0.972 -4.679 1.00 0.00 N ATOM 170 CA GLU 60 -3.669 -0.773 -4.209 1.00 0.00 C ATOM 171 C GLU 60 -4.467 -2.079 -4.170 1.00 0.00 C ATOM 172 O GLU 60 -5.418 -2.175 -3.403 1.00 0.00 O ATOM 173 N GLY 61 -4.073 -3.059 -5.000 1.00 0.00 N ATOM 174 CA GLY 61 -4.636 -4.434 -4.969 1.00 0.00 C ATOM 175 C GLY 61 -4.075 -5.300 -3.823 1.00 0.00 C ATOM 176 O GLY 61 -4.808 -6.009 -3.160 1.00 0.00 O ATOM 177 N LEU 62 -2.771 -5.223 -3.612 1.00 0.00 N ATOM 178 CA LEU 62 -2.068 -5.967 -2.563 1.00 0.00 C ATOM 179 C LEU 62 -2.252 -5.214 -1.219 1.00 0.00 C ATOM 180 O LEU 62 -1.841 -5.698 -0.136 1.00 0.00 O ATOM 181 N GLY 63 -2.865 -4.020 -1.324 1.00 0.00 N ATOM 182 CA GLY 63 -3.062 -3.091 -0.226 1.00 0.00 C ATOM 183 C GLY 63 -1.797 -2.738 0.543 1.00 0.00 C ATOM 184 O GLY 63 -1.835 -2.765 1.775 1.00 0.00 O ATOM 185 N TYR 64 -0.689 -2.457 -0.162 1.00 0.00 N ATOM 186 CA TYR 64 0.594 -2.043 0.457 1.00 0.00 C ATOM 187 C TYR 64 1.116 -0.746 -0.206 1.00 0.00 C ATOM 188 O TYR 64 0.362 -0.025 -0.859 1.00 0.00 O ATOM 189 N SER 65 2.406 -0.447 -0.042 1.00 0.00 N ATOM 190 CA SER 65 2.969 0.849 -0.434 1.00 0.00 C ATOM 191 C SER 65 3.566 0.902 -1.847 1.00 0.00 C ATOM 192 O SER 65 3.612 -0.087 -2.569 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 192 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 65.58 69.6 92 74.2 124 ARMSMC SECONDARY STRUCTURE . . 55.60 78.6 70 85.4 82 ARMSMC SURFACE . . . . . . . . 66.45 70.0 60 66.7 90 ARMSMC BURIED . . . . . . . . 63.92 68.8 32 94.1 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 47 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 27 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.13 (Number of atoms: 48) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.13 48 76.2 63 CRMSCA CRN = ALL/NP . . . . . 0.2319 CRMSCA SECONDARY STRUCTURE . . 12.10 36 87.8 41 CRMSCA SURFACE . . . . . . . . 10.37 31 67.4 46 CRMSCA BURIED . . . . . . . . 12.40 17 100.0 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.97 192 62.1 309 CRMSMC SECONDARY STRUCTURE . . 11.94 144 71.6 201 CRMSMC SURFACE . . . . . . . . 10.18 124 54.9 226 CRMSMC BURIED . . . . . . . . 12.28 68 81.9 83 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 750 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 730 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 484 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 554 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 196 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.97 192 19.2 1002 CRMSALL SECONDARY STRUCTURE . . 11.94 144 22.2 648 CRMSALL SURFACE . . . . . . . . 10.18 124 16.8 738 CRMSALL BURIED . . . . . . . . 12.28 68 25.8 264 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.725 1.000 0.500 48 76.2 63 ERRCA SECONDARY STRUCTURE . . 10.670 1.000 0.500 36 87.8 41 ERRCA SURFACE . . . . . . . . 9.241 1.000 0.500 31 67.4 46 ERRCA BURIED . . . . . . . . 10.608 1.000 0.500 17 100.0 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.607 1.000 0.500 192 62.1 309 ERRMC SECONDARY STRUCTURE . . 10.557 1.000 0.500 144 71.6 201 ERRMC SURFACE . . . . . . . . 9.043 1.000 0.500 124 54.9 226 ERRMC BURIED . . . . . . . . 10.635 1.000 0.500 68 81.9 83 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 750 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 730 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 484 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 554 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 196 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.607 1.000 0.500 192 19.2 1002 ERRALL SECONDARY STRUCTURE . . 10.557 1.000 0.500 144 22.2 648 ERRALL SURFACE . . . . . . . . 9.043 1.000 0.500 124 16.8 738 ERRALL BURIED . . . . . . . . 10.635 1.000 0.500 68 25.8 264 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 12 27 48 63 DISTCA CA (P) 0.00 1.59 3.17 19.05 42.86 63 DISTCA CA (RMS) 0.00 1.67 2.20 4.19 6.10 DISTCA ALL (N) 0 2 3 55 107 192 1002 DISTALL ALL (P) 0.00 0.20 0.30 5.49 10.68 1002 DISTALL ALL (RMS) 0.00 1.83 2.13 4.31 5.96 DISTALL END of the results output