####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 93 ( 372), selected 93 , name T0553AL285_1 # Molecule2: number of CA atoms 134 ( 2159), selected 93 , name T0553.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0553AL285_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 33 - 68 4.84 24.38 LCS_AVERAGE: 20.22 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 37 - 52 2.00 21.22 LONGEST_CONTINUOUS_SEGMENT: 16 38 - 53 1.89 21.64 LCS_AVERAGE: 8.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 52 - 63 0.52 26.83 LCS_AVERAGE: 5.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 93 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 16 I 16 3 3 17 0 3 3 3 3 3 4 7 7 15 17 25 26 27 31 35 36 36 37 39 LCS_GDT K 17 K 17 3 3 17 0 3 3 3 4 9 11 13 15 16 18 22 25 27 31 35 36 36 37 39 LCS_GDT T 18 T 18 3 4 17 0 3 3 3 4 6 9 12 15 15 17 19 23 27 31 35 36 36 38 40 LCS_GDT L 19 L 19 3 11 17 3 3 3 3 7 11 12 15 17 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT I 20 I 20 10 11 17 8 8 9 10 12 14 15 16 17 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT S 21 S 21 10 11 17 8 8 9 10 12 14 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT A 22 A 22 10 11 17 8 8 9 10 12 14 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT A 23 A 23 10 11 29 8 8 9 10 12 14 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT Y 24 Y 24 10 11 29 8 8 9 10 12 14 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT R 25 R 25 10 11 29 8 8 9 10 12 14 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT Q 26 Q 26 10 11 29 8 8 9 10 12 14 15 17 20 21 22 25 26 28 31 35 36 36 38 40 LCS_GDT I 27 I 27 10 11 29 8 8 9 10 12 14 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT F 28 F 28 10 11 29 3 4 9 10 12 14 15 16 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT E 29 E 29 10 11 29 3 4 6 10 12 14 19 20 21 21 22 25 26 28 31 35 36 36 38 42 LCS_GDT R 30 R 30 3 4 30 3 3 3 5 5 7 18 20 21 21 22 23 25 26 29 30 33 37 38 42 LCS_GDT D 31 D 31 3 4 33 3 3 4 5 5 16 19 20 21 21 22 24 25 26 29 30 34 37 38 42 LCS_GDT I 32 I 32 4 6 33 3 4 10 14 15 16 19 20 21 24 25 26 29 30 31 33 34 37 38 42 LCS_GDT A 33 A 33 4 6 34 1 4 5 8 12 17 19 22 24 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT I 36 I 36 4 6 34 3 4 5 6 6 6 10 17 23 24 27 29 30 32 32 33 34 37 38 42 LCS_GDT A 37 A 37 4 16 34 3 4 5 9 13 16 19 20 23 24 27 29 30 32 32 33 34 37 38 42 LCS_GDT Q 38 Q 38 4 16 34 3 4 5 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT N 39 N 39 4 16 34 3 4 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT E 40 E 40 4 16 34 3 4 9 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT F 41 F 41 11 16 34 9 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT S 42 S 42 11 16 34 9 10 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT G 43 G 43 11 16 34 9 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT W 44 W 44 11 16 34 9 10 12 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT E 45 E 45 11 16 34 9 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT S 46 S 46 11 16 34 9 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT K 47 K 47 11 16 34 9 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT L 48 L 48 11 16 34 9 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT G 49 G 49 11 16 34 9 10 12 14 15 17 19 22 24 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT N 50 N 50 11 16 34 4 10 12 14 15 18 20 22 24 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT G 51 G 51 11 16 34 4 10 12 14 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT E 52 E 52 12 16 34 7 12 13 16 16 16 19 23 25 26 28 29 30 32 32 32 33 36 37 38 LCS_GDT I 53 I 53 12 16 34 9 12 13 16 16 17 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT T 54 T 54 12 13 34 9 12 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT V 55 V 55 12 13 34 9 12 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 36 38 40 LCS_GDT K 56 K 56 12 13 34 9 12 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT E 57 E 57 12 13 34 9 12 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT F 58 F 58 12 13 34 9 12 13 16 16 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT I 59 I 59 12 13 34 9 12 13 16 16 17 19 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT E 60 E 60 12 13 34 9 12 13 16 16 17 19 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT G 61 G 61 12 13 34 9 12 13 16 16 17 19 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT L 62 L 62 12 13 34 9 12 12 16 16 17 19 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT G 63 G 63 12 14 34 4 12 13 16 16 17 19 23 25 26 28 29 30 32 32 32 33 36 36 37 LCS_GDT Y 64 Y 64 10 14 34 3 9 10 11 15 18 20 23 25 26 28 29 30 32 32 33 34 37 38 42 LCS_GDT S 65 S 65 10 14 34 3 9 10 11 12 14 15 19 22 26 27 27 30 32 32 33 34 37 38 42 LCS_GDT N 66 N 66 10 14 34 3 9 10 11 12 14 15 17 20 23 24 25 27 28 29 31 34 37 38 42 LCS_GDT L 67 L 67 10 14 34 4 9 10 11 12 14 15 17 20 23 24 25 27 28 29 31 34 36 37 40 LCS_GDT Y 68 Y 68 10 14 34 4 9 10 11 13 17 18 19 22 26 27 28 30 32 32 33 34 37 38 42 LCS_GDT L 69 L 69 10 14 33 4 9 10 11 12 14 15 17 20 23 24 25 27 28 31 33 34 37 38 42 LCS_GDT K 70 K 70 10 14 27 4 9 10 11 12 14 15 17 20 23 24 25 27 28 29 30 32 37 38 42 LCS_GDT E 71 E 71 10 14 27 3 9 10 11 12 14 15 17 20 23 24 25 27 28 31 33 34 37 38 42 LCS_GDT F 72 F 72 10 14 27 4 9 10 11 12 14 15 17 20 23 24 25 27 28 29 30 34 37 38 42 LCS_GDT Y 73 Y 73 10 14 27 3 5 10 11 12 14 15 17 20 23 24 25 27 28 29 30 33 34 38 42 LCS_GDT T 74 T 74 5 14 27 3 5 6 10 12 14 15 17 20 23 24 25 27 28 29 30 32 33 37 42 LCS_GDT P 75 P 75 5 14 27 3 4 6 10 12 14 15 17 20 23 24 25 27 28 29 34 36 36 38 42 LCS_GDT Y 76 Y 76 5 14 27 3 5 10 11 12 14 15 17 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT P 77 P 77 4 13 27 4 4 6 8 11 14 15 17 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT N 78 N 78 4 4 27 4 4 4 4 5 8 11 15 19 23 24 25 27 28 29 30 32 33 36 38 LCS_GDT T 79 T 79 4 5 27 4 4 4 6 6 6 13 15 18 23 24 25 27 28 29 35 36 36 38 40 LCS_GDT K 80 K 80 4 5 27 4 4 5 8 9 10 14 17 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT V 81 V 81 4 5 27 3 3 5 8 9 10 13 17 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT I 82 I 82 4 5 27 3 3 4 8 11 12 14 17 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT E 83 E 83 4 5 27 1 3 10 10 11 11 11 11 15 18 19 22 25 27 31 35 36 36 38 41 LCS_GDT L 84 L 84 3 3 25 0 3 3 3 5 5 8 10 12 14 17 18 21 21 24 29 32 33 38 42 LCS_GDT R 92 R 92 0 0 21 0 3 3 6 6 6 12 12 13 13 14 17 21 22 26 30 34 37 38 42 LCS_GDT A 93 A 93 4 5 17 4 4 4 4 4 6 6 6 7 9 11 16 18 21 23 24 25 27 36 36 LCS_GDT P 94 P 94 4 5 19 4 4 4 4 4 6 6 7 8 10 11 16 18 21 23 24 25 28 36 36 LCS_GDT I 95 I 95 4 5 19 4 4 4 4 4 6 6 7 11 11 15 17 21 21 25 28 30 31 33 35 LCS_GDT D 96 D 96 4 5 20 4 4 9 10 11 14 14 16 17 18 19 22 24 26 29 30 32 35 37 39 LCS_GDT Q 97 Q 97 3 5 20 3 3 3 10 12 14 15 16 17 19 21 25 26 27 31 35 36 36 38 40 LCS_GDT A 98 A 98 3 4 20 3 3 3 4 4 7 9 13 14 15 16 20 24 25 30 35 36 36 38 39 LCS_GDT E 99 E 99 3 10 20 3 3 4 8 9 10 12 13 17 19 23 25 26 27 31 35 36 36 38 40 LCS_GDT I 100 I 100 9 10 20 9 9 10 10 11 12 14 17 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT R 101 R 101 9 10 20 9 9 10 10 11 13 15 16 20 23 24 25 27 28 31 35 36 36 38 40 LCS_GDT K 102 K 102 9 10 20 9 9 10 10 11 11 13 15 18 19 22 25 27 28 29 35 36 36 38 40 LCS_GDT Y 103 Y 103 9 10 20 9 9 10 10 11 11 15 17 18 19 22 25 27 28 31 35 36 36 38 40 LCS_GDT N 104 N 104 9 10 20 9 9 10 10 12 14 15 17 18 19 22 25 27 28 31 35 36 36 38 40 LCS_GDT Q 105 Q 105 9 10 20 9 9 10 10 11 11 12 13 14 19 21 24 26 28 30 35 36 36 38 40 LCS_GDT I 106 I 106 9 10 20 9 9 10 10 11 11 12 13 14 15 21 25 26 28 31 35 36 36 38 40 LCS_GDT L 107 L 107 9 10 20 9 9 10 10 11 13 15 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT A 108 A 108 9 10 20 9 9 10 10 11 14 15 16 17 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT A 114 A 114 9 9 20 7 8 8 10 11 12 13 17 18 19 21 25 26 28 31 35 36 36 38 40 LCS_GDT F 115 F 115 9 9 20 7 8 8 9 9 10 11 13 15 19 21 23 26 28 31 35 36 36 38 40 LCS_GDT I 116 I 116 9 9 20 7 8 8 9 9 10 11 13 14 15 16 21 25 27 28 30 33 34 38 40 LCS_GDT N 117 N 117 9 9 20 7 8 8 9 9 10 11 13 14 15 16 21 25 27 28 30 33 34 38 40 LCS_GDT A 118 A 118 9 9 20 7 8 8 9 9 10 11 13 13 13 16 21 25 27 28 30 32 34 37 40 LCS_GDT L 119 L 119 9 9 20 7 8 8 9 9 10 11 13 13 13 16 21 25 27 28 30 32 33 34 36 LCS_GDT V 120 V 120 9 9 20 7 8 8 9 9 10 11 13 13 14 16 21 25 27 28 30 32 33 34 36 LCS_GDT N 121 N 121 9 9 17 3 8 8 9 9 10 11 13 13 13 16 21 25 27 28 30 32 33 34 36 LCS_GDT S 122 S 122 9 9 17 3 3 3 9 9 10 11 13 13 13 16 19 25 27 28 29 32 33 34 36 LCS_AVERAGE LCS_A: 11.40 ( 5.97 8.00 20.22 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 13 16 16 18 20 23 25 26 28 29 30 32 32 35 36 37 38 42 GDT PERCENT_AT 6.72 8.96 9.70 11.94 11.94 13.43 14.93 17.16 18.66 19.40 20.90 21.64 22.39 23.88 23.88 26.12 26.87 27.61 28.36 31.34 GDT RMS_LOCAL 0.29 0.52 0.90 1.17 1.17 2.06 2.27 2.58 2.83 3.03 3.39 3.54 3.69 4.03 4.03 5.28 5.41 6.10 6.03 7.17 GDT RMS_ALL_AT 26.85 26.83 27.24 27.29 27.29 25.16 24.95 26.66 26.30 25.68 25.37 25.18 24.98 24.69 24.69 22.03 21.76 21.45 20.85 20.36 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 16 I 16 37.379 4 0.502 0.502 37.994 0.000 0.000 LGA K 17 K 17 33.438 5 0.638 0.638 34.376 0.000 0.000 LGA T 18 T 18 32.161 3 0.639 0.639 34.011 0.000 0.000 LGA L 19 L 19 32.136 4 0.612 0.612 33.930 0.000 0.000 LGA I 20 I 20 31.972 4 0.623 0.623 31.972 0.000 0.000 LGA S 21 S 21 29.596 2 0.046 0.046 30.543 0.000 0.000 LGA A 22 A 22 29.964 1 0.073 0.073 30.298 0.000 0.000 LGA A 23 A 23 31.322 1 0.098 0.098 31.322 0.000 0.000 LGA Y 24 Y 24 30.141 8 0.072 0.072 30.549 0.000 0.000 LGA R 25 R 25 29.164 7 0.155 0.155 29.512 0.000 0.000 LGA Q 26 Q 26 30.078 5 0.067 0.067 30.390 0.000 0.000 LGA I 27 I 27 31.047 4 0.100 0.100 31.047 0.000 0.000 LGA F 28 F 28 28.251 7 0.160 0.160 29.288 0.000 0.000 LGA E 29 E 29 26.276 5 0.089 0.089 27.315 0.000 0.000 LGA R 30 R 30 23.655 7 0.587 0.587 24.933 0.000 0.000 LGA D 31 D 31 20.678 4 0.626 0.626 22.204 0.000 0.000 LGA I 32 I 32 14.912 4 0.593 0.593 17.114 0.000 0.000 LGA A 33 A 33 10.079 1 0.632 0.632 12.000 2.500 2.000 LGA I 36 I 36 9.577 4 0.158 0.158 9.577 4.524 2.262 LGA A 37 A 37 7.989 1 0.385 0.385 7.989 11.429 9.143 LGA Q 38 Q 38 2.117 5 0.627 0.627 3.344 69.524 30.899 LGA N 39 N 39 1.334 4 0.042 0.042 3.028 74.048 37.024 LGA E 40 E 40 2.810 5 0.034 0.034 4.027 54.286 24.127 LGA F 41 F 41 3.717 7 0.322 0.322 3.717 57.738 20.996 LGA S 42 S 42 0.705 2 0.041 0.041 2.397 77.381 51.587 LGA G 43 G 43 3.627 0 0.112 0.112 3.627 53.810 53.810 LGA W 44 W 44 2.362 10 0.100 0.100 2.534 75.714 21.633 LGA E 45 E 45 2.581 5 0.063 0.063 4.571 55.000 24.444 LGA S 46 S 46 5.004 2 0.071 0.071 6.374 29.881 19.921 LGA K 47 K 47 3.598 5 0.150 0.150 4.104 43.452 19.312 LGA L 48 L 48 3.702 4 0.096 0.096 6.012 35.952 17.976 LGA G 49 G 49 7.931 0 0.066 0.066 9.691 7.381 7.381 LGA N 50 N 50 8.222 4 0.036 0.036 8.222 7.262 3.631 LGA G 51 G 51 4.580 0 0.631 0.631 5.559 43.929 43.929 LGA E 52 E 52 3.039 5 0.675 0.675 3.039 61.429 27.302 LGA I 53 I 53 2.622 4 0.090 0.090 2.977 59.048 29.524 LGA T 54 T 54 2.443 3 0.051 0.051 2.480 66.786 38.163 LGA V 55 V 55 1.849 3 0.044 0.044 2.077 72.976 41.701 LGA K 56 K 56 1.513 5 0.146 0.146 1.639 84.048 37.354 LGA E 57 E 57 1.307 5 0.034 0.034 1.307 83.690 37.196 LGA F 58 F 58 0.344 7 0.047 0.047 0.896 95.238 34.632 LGA I 59 I 59 1.046 4 0.038 0.038 1.849 83.929 41.964 LGA E 60 E 60 1.299 5 0.088 0.088 2.425 75.119 33.386 LGA G 61 G 61 2.151 0 0.062 0.062 2.819 64.881 64.881 LGA L 62 L 62 2.950 4 0.153 0.153 2.950 59.048 29.524 LGA G 63 G 63 2.386 0 0.351 0.351 2.760 66.905 66.905 LGA Y 64 Y 64 5.763 8 0.642 0.642 8.890 21.071 7.024 LGA S 65 S 65 9.991 2 0.227 0.227 11.559 1.905 1.270 LGA N 66 N 66 16.282 4 0.238 0.238 17.423 0.000 0.000 LGA L 67 L 67 16.127 4 0.232 0.232 16.132 0.000 0.000 LGA Y 68 Y 68 10.772 8 0.120 0.120 13.169 0.000 0.000 LGA L 69 L 69 15.355 4 0.104 0.104 19.578 0.000 0.000 LGA K 70 K 70 20.883 5 0.211 0.211 22.874 0.000 0.000 LGA E 71 E 71 18.383 5 0.071 0.071 20.934 0.000 0.000 LGA F 72 F 72 19.256 7 0.336 0.336 22.507 0.000 0.000 LGA Y 73 Y 73 24.321 8 0.048 0.048 28.870 0.000 0.000 LGA T 74 T 74 28.764 3 0.132 0.132 31.949 0.000 0.000 LGA P 75 P 75 29.568 3 0.269 0.269 32.856 0.000 0.000 LGA Y 76 Y 76 31.213 8 0.668 0.668 34.298 0.000 0.000 LGA P 77 P 77 36.315 3 0.524 0.524 36.641 0.000 0.000 LGA N 78 N 78 37.311 4 0.120 0.120 37.822 0.000 0.000 LGA T 79 T 79 38.540 3 0.087 0.087 38.799 0.000 0.000 LGA K 80 K 80 37.828 5 0.274 0.274 37.844 0.000 0.000 LGA V 81 V 81 32.783 3 0.055 0.055 34.551 0.000 0.000 LGA I 82 I 82 31.730 4 0.536 0.536 32.293 0.000 0.000 LGA E 83 E 83 32.486 5 0.614 0.614 32.512 0.000 0.000 LGA L 84 L 84 28.258 4 0.610 0.610 30.067 0.000 0.000 LGA R 92 R 92 26.703 7 0.025 0.025 26.703 0.000 0.000 LGA A 93 A 93 22.312 1 0.065 0.065 24.479 0.000 0.000 LGA P 94 P 94 26.500 3 0.083 0.083 27.771 0.000 0.000 LGA I 95 I 95 30.297 4 0.537 0.537 34.327 0.000 0.000 LGA D 96 D 96 35.550 4 0.130 0.130 36.482 0.000 0.000 LGA Q 97 Q 97 40.192 5 0.621 0.621 40.551 0.000 0.000 LGA A 98 A 98 42.268 1 0.650 0.650 42.268 0.000 0.000 LGA E 99 E 99 41.030 5 0.026 0.026 41.619 0.000 0.000 LGA I 100 I 100 43.777 4 0.563 0.563 44.364 0.000 0.000 LGA R 101 R 101 47.438 7 0.027 0.027 47.438 0.000 0.000 LGA K 102 K 102 45.918 5 0.043 0.043 46.483 0.000 0.000 LGA Y 103 Y 103 39.111 8 0.049 0.049 41.667 0.000 0.000 LGA N 104 N 104 40.197 4 0.036 0.036 40.963 0.000 0.000 LGA Q 105 Q 105 43.912 5 0.035 0.035 43.912 0.000 0.000 LGA I 106 I 106 39.935 4 0.033 0.033 41.334 0.000 0.000 LGA L 107 L 107 34.580 4 0.027 0.027 36.500 0.000 0.000 LGA A 108 A 108 37.924 1 0.021 0.021 38.400 0.000 0.000 LGA A 114 A 114 33.510 1 0.084 0.084 34.875 0.000 0.000 LGA F 115 F 115 33.811 7 0.043 0.043 33.811 0.000 0.000 LGA I 116 I 116 28.584 4 0.027 0.027 30.081 0.000 0.000 LGA N 117 N 117 30.757 4 0.062 0.062 34.011 0.000 0.000 LGA A 118 A 118 37.540 1 0.036 0.036 39.174 0.000 0.000 LGA L 119 L 119 35.859 4 0.033 0.033 36.512 0.000 0.000 LGA V 120 V 120 33.213 3 0.052 0.052 35.709 0.000 0.000 LGA N 121 N 121 38.467 4 0.200 0.200 41.992 0.000 0.000 LGA S 122 S 122 42.258 2 0.222 0.222 44.636 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 93 372 372 100.00 753 372 49.40 134 SUMMARY(RMSD_GDC): 15.319 15.243 15.243 11.939 6.574 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 93 134 4.0 23 2.58 16.045 13.986 0.859 LGA_LOCAL RMSD: 2.578 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 26.657 Number of assigned atoms: 93 Std_ASGN_ATOMS RMSD: 15.319 Standard rmsd on all 93 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.449374 * X + 0.617441 * Y + 0.645623 * Z + -77.867889 Y_new = -0.892287 * X + 0.345362 * Y + 0.290774 * Z + -23.472437 Z_new = -0.043438 * X + -0.706747 * Y + 0.706131 * Z + 65.964371 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.104256 0.043451 -0.785834 [DEG: -63.2692 2.4896 -45.0250 ] ZXZ: 1.993964 0.786777 -3.080208 [DEG: 114.2457 45.0790 -176.4829 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0553AL285_1 REMARK 2: T0553.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0553AL285_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 93 134 4.0 23 2.58 13.986 15.32 REMARK ---------------------------------------------------------- MOLECULE T0553AL285_1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1r22A ATOM 1 N ILE 16 18.236 -42.660 -22.042 1.00 0.00 N ATOM 2 CA ILE 16 18.306 -41.231 -22.461 1.00 0.00 C ATOM 3 C ILE 16 19.077 -40.350 -21.495 1.00 0.00 C ATOM 4 O ILE 16 19.653 -40.786 -20.489 1.00 0.00 O ATOM 5 N LYS 17 19.064 -39.070 -21.834 1.00 0.00 N ATOM 6 CA LYS 17 19.767 -38.081 -21.050 1.00 0.00 C ATOM 7 C LYS 17 18.813 -37.196 -20.281 1.00 0.00 C ATOM 8 O LYS 17 17.812 -36.721 -20.789 1.00 0.00 O ATOM 9 N THR 18 19.155 -36.984 -19.035 1.00 0.00 N ATOM 10 CA THR 18 18.622 -35.918 -18.200 1.00 0.00 C ATOM 11 C THR 18 19.248 -34.641 -18.631 1.00 0.00 C ATOM 12 O THR 18 20.369 -34.630 -19.106 1.00 0.00 O ATOM 13 N LEU 19 18.590 -33.540 -18.397 1.00 0.00 N ATOM 14 CA LEU 19 19.268 -32.248 -18.580 1.00 0.00 C ATOM 15 C LEU 19 20.512 -32.145 -17.709 1.00 0.00 C ATOM 16 O LEU 19 20.593 -32.737 -16.602 1.00 0.00 O ATOM 17 N ILE 20 21.490 -31.384 -18.225 1.00 0.00 N ATOM 18 CA ILE 20 22.752 -31.128 -17.525 1.00 0.00 C ATOM 19 C ILE 20 22.521 -30.607 -16.120 1.00 0.00 C ATOM 20 O ILE 20 21.684 -29.750 -15.932 1.00 0.00 O ATOM 21 N SER 21 23.325 -31.064 -15.165 1.00 0.00 N ATOM 22 CA SER 21 23.282 -30.519 -13.796 1.00 0.00 C ATOM 23 C SER 21 23.232 -28.962 -13.706 1.00 0.00 C ATOM 24 O SER 21 22.492 -28.496 -12.886 1.00 0.00 O ATOM 25 N ALA 22 24.002 -28.217 -14.492 1.00 0.00 N ATOM 26 CA ALA 22 24.025 -26.738 -14.472 1.00 0.00 C ATOM 27 C ALA 22 22.698 -26.131 -14.910 1.00 0.00 C ATOM 28 O ALA 22 22.297 -25.073 -14.459 1.00 0.00 O ATOM 29 N ALA 23 22.124 -26.752 -15.904 1.00 0.00 N ATOM 30 CA ALA 23 20.790 -26.428 -16.381 1.00 0.00 C ATOM 31 C ALA 23 19.742 -26.694 -15.285 1.00 0.00 C ATOM 32 O ALA 23 18.884 -25.862 -15.021 1.00 0.00 O ATOM 33 N TYR 24 19.884 -27.806 -14.605 1.00 0.00 N ATOM 34 CA TYR 24 19.010 -28.107 -13.496 1.00 0.00 C ATOM 35 C TYR 24 19.128 -27.108 -12.362 1.00 0.00 C ATOM 36 O TYR 24 18.091 -26.775 -11.731 1.00 0.00 O ATOM 37 N ARG 25 20.362 -26.691 -12.050 1.00 0.00 N ATOM 38 CA ARG 25 20.545 -25.836 -10.913 1.00 0.00 C ATOM 39 C ARG 25 19.945 -24.475 -11.255 1.00 0.00 C ATOM 40 O ARG 25 19.343 -23.876 -10.387 1.00 0.00 O ATOM 41 N GLN 26 20.045 -24.017 -12.496 1.00 0.00 N ATOM 42 CA GLN 26 19.494 -22.708 -12.851 1.00 0.00 C ATOM 43 C GLN 26 17.974 -22.780 -12.879 1.00 0.00 C ATOM 44 O GLN 26 17.306 -21.879 -12.424 1.00 0.00 O ATOM 45 N ILE 27 17.443 -23.885 -13.388 1.00 0.00 N ATOM 46 CA ILE 27 15.997 -24.067 -13.461 1.00 0.00 C ATOM 47 C ILE 27 15.428 -24.120 -12.032 1.00 0.00 C ATOM 48 O ILE 27 14.427 -23.435 -11.689 1.00 0.00 O ATOM 49 N PHE 28 16.181 -24.752 -11.160 1.00 0.00 N ATOM 50 CA PHE 28 15.908 -24.751 -9.693 1.00 0.00 C ATOM 51 C PHE 28 15.850 -23.394 -9.100 1.00 0.00 C ATOM 52 O PHE 28 14.947 -23.041 -8.322 1.00 0.00 O ATOM 53 N GLU 29 16.828 -22.608 -9.447 1.00 0.00 N ATOM 54 CA GLU 29 16.833 -21.193 -8.926 1.00 0.00 C ATOM 55 C GLU 29 15.673 -20.369 -9.371 1.00 0.00 C ATOM 56 O GLU 29 15.197 -19.505 -8.612 1.00 0.00 O ATOM 57 N ARG 30 15.177 -20.697 -10.562 1.00 0.00 N ATOM 58 CA ARG 30 14.041 -19.979 -11.138 1.00 0.00 C ATOM 59 C ARG 30 12.684 -20.381 -10.483 1.00 0.00 C ATOM 60 O ARG 30 11.864 -19.510 -10.126 1.00 0.00 O ATOM 61 N ASP 31 12.461 -21.668 -10.267 1.00 0.00 N ATOM 62 CA ASP 31 11.344 -22.124 -9.437 1.00 0.00 C ATOM 63 C ASP 31 11.350 -21.631 -7.980 1.00 0.00 C ATOM 64 O ASP 31 10.290 -21.221 -7.504 1.00 0.00 O ATOM 65 N ILE 32 12.532 -21.632 -7.326 1.00 0.00 N ATOM 66 CA ILE 32 12.738 -21.004 -5.986 1.00 0.00 C ATOM 67 C ILE 32 12.166 -19.593 -5.848 1.00 0.00 C ATOM 68 O ILE 32 11.426 -19.359 -4.935 1.00 0.00 O ATOM 69 N ALA 33 12.428 -18.711 -6.787 1.00 0.00 N ATOM 70 CA ALA 33 11.803 -17.388 -6.742 1.00 0.00 C ATOM 71 C ALA 33 10.268 -17.454 -6.798 1.00 0.00 C ATOM 72 O ALA 33 9.587 -16.654 -6.190 1.00 0.00 O ATOM 73 N ILE 36 9.715 -18.410 -7.532 1.00 0.00 N ATOM 74 CA ILE 36 8.273 -18.605 -7.506 1.00 0.00 C ATOM 75 C ILE 36 7.695 -19.153 -6.183 1.00 0.00 C ATOM 76 O ILE 36 6.482 -19.042 -5.922 1.00 0.00 O ATOM 77 N ALA 37 8.577 -19.709 -5.334 1.00 0.00 N ATOM 78 CA ALA 37 8.183 -20.345 -4.079 1.00 0.00 C ATOM 79 C ALA 37 8.006 -19.319 -2.946 1.00 0.00 C ATOM 80 O ALA 37 8.473 -19.490 -1.848 1.00 0.00 O ATOM 81 N GLN 38 7.276 -18.248 -3.238 1.00 0.00 N ATOM 82 CA GLN 38 7.019 -17.161 -2.313 1.00 0.00 C ATOM 83 C GLN 38 5.616 -16.659 -2.576 1.00 0.00 C ATOM 84 O GLN 38 5.264 -16.212 -3.670 1.00 0.00 O ATOM 85 N ASN 39 4.786 -16.784 -1.572 1.00 0.00 N ATOM 86 CA ASN 39 3.372 -16.424 -1.736 1.00 0.00 C ATOM 87 C ASN 39 3.113 -14.939 -2.095 1.00 0.00 C ATOM 88 O ASN 39 2.178 -14.691 -2.864 1.00 0.00 O ATOM 89 N GLU 40 3.930 -14.014 -1.622 1.00 0.00 N ATOM 90 CA GLU 40 3.739 -12.591 -1.923 1.00 0.00 C ATOM 91 C GLU 40 4.057 -12.333 -3.395 1.00 0.00 C ATOM 92 O GLU 40 3.237 -11.752 -4.101 1.00 0.00 O ATOM 93 N PHE 41 5.189 -12.852 -3.887 1.00 0.00 N ATOM 94 CA PHE 41 5.433 -12.786 -5.319 1.00 0.00 C ATOM 95 C PHE 41 4.270 -13.350 -6.181 1.00 0.00 C ATOM 96 O PHE 41 3.819 -12.735 -7.213 1.00 0.00 O ATOM 97 N SER 42 3.777 -14.491 -5.759 1.00 0.00 N ATOM 98 CA SER 42 2.761 -15.139 -6.504 1.00 0.00 C ATOM 99 C SER 42 1.452 -14.281 -6.565 1.00 0.00 C ATOM 100 O SER 42 0.695 -14.337 -7.519 1.00 0.00 O ATOM 101 N GLY 43 1.212 -13.508 -5.530 1.00 0.00 N ATOM 102 CA GLY 43 0.065 -12.603 -5.450 1.00 0.00 C ATOM 103 C GLY 43 0.181 -11.502 -6.495 1.00 0.00 C ATOM 104 O GLY 43 -0.786 -11.250 -7.234 1.00 0.00 O ATOM 105 N TRP 44 1.349 -10.898 -6.595 1.00 0.00 N ATOM 106 CA TRP 44 1.602 -9.896 -7.642 1.00 0.00 C ATOM 107 C TRP 44 1.380 -10.458 -8.991 1.00 0.00 C ATOM 108 O TRP 44 0.695 -9.850 -9.802 1.00 0.00 O ATOM 109 N GLU 45 1.974 -11.625 -9.254 1.00 0.00 N ATOM 110 CA GLU 45 1.823 -12.284 -10.524 1.00 0.00 C ATOM 111 C GLU 45 0.408 -12.670 -10.839 1.00 0.00 C ATOM 112 O GLU 45 0.070 -12.752 -12.032 1.00 0.00 O ATOM 113 N SER 46 -0.419 -12.988 -9.822 1.00 0.00 N ATOM 114 CA SER 46 -1.840 -13.279 -10.105 1.00 0.00 C ATOM 115 C SER 46 -2.512 -12.046 -10.705 1.00 0.00 C ATOM 116 O SER 46 -3.443 -12.156 -11.419 1.00 0.00 O ATOM 117 N LYS 47 -2.076 -10.878 -10.323 1.00 0.00 N ATOM 118 CA LYS 47 -2.625 -9.616 -10.830 1.00 0.00 C ATOM 119 C LYS 47 -2.100 -9.390 -12.249 1.00 0.00 C ATOM 120 O LYS 47 -2.890 -9.341 -13.176 1.00 0.00 O ATOM 121 N LEU 48 -0.775 -9.364 -12.424 1.00 0.00 N ATOM 122 CA LEU 48 -0.211 -9.242 -13.750 1.00 0.00 C ATOM 123 C LEU 48 -0.721 -10.263 -14.704 1.00 0.00 C ATOM 124 O LEU 48 -0.754 -10.003 -15.869 1.00 0.00 O ATOM 125 N GLY 49 -1.205 -11.396 -14.232 1.00 0.00 N ATOM 126 CA GLY 49 -1.748 -12.424 -15.155 1.00 0.00 C ATOM 127 C GLY 49 -2.998 -11.987 -15.951 1.00 0.00 C ATOM 128 O GLY 49 -3.295 -12.530 -17.037 1.00 0.00 O ATOM 129 N ASN 50 -3.762 -11.075 -15.384 1.00 0.00 N ATOM 130 CA ASN 50 -5.013 -10.610 -16.020 1.00 0.00 C ATOM 131 C ASN 50 -4.758 -9.341 -16.851 1.00 0.00 C ATOM 132 O ASN 50 -5.504 -9.080 -17.770 1.00 0.00 O ATOM 133 N GLY 51 -3.730 -8.551 -16.527 1.00 0.00 N ATOM 134 CA GLY 51 -3.389 -7.376 -17.347 1.00 0.00 C ATOM 135 C GLY 51 -2.083 -6.739 -16.927 1.00 0.00 C ATOM 136 O GLY 51 -1.615 -6.945 -15.832 1.00 0.00 O ATOM 137 N GLU 52 -1.513 -5.909 -17.775 1.00 0.00 N ATOM 138 CA GLU 52 -0.450 -5.033 -17.315 1.00 0.00 C ATOM 139 C GLU 52 -1.057 -3.973 -16.374 1.00 0.00 C ATOM 140 O GLU 52 -2.253 -3.662 -16.476 1.00 0.00 O ATOM 141 N ILE 53 -0.253 -3.446 -15.450 1.00 0.00 N ATOM 142 CA ILE 53 -0.758 -2.598 -14.385 1.00 0.00 C ATOM 143 C ILE 53 0.369 -1.719 -13.906 1.00 0.00 C ATOM 144 O ILE 53 1.519 -2.148 -13.900 1.00 0.00 O ATOM 145 N THR 54 0.043 -0.530 -13.411 1.00 0.00 N ATOM 146 CA THR 54 1.061 0.382 -12.875 1.00 0.00 C ATOM 147 C THR 54 1.609 -0.064 -11.515 1.00 0.00 C ATOM 148 O THR 54 0.977 -0.836 -10.817 1.00 0.00 O ATOM 149 N VAL 55 2.779 0.441 -11.157 1.00 0.00 N ATOM 150 CA VAL 55 3.330 0.354 -9.801 1.00 0.00 C ATOM 151 C VAL 55 2.352 0.617 -8.634 1.00 0.00 C ATOM 152 O VAL 55 2.409 -0.078 -7.620 1.00 0.00 O ATOM 153 N LYS 56 1.490 1.616 -8.780 1.00 0.00 N ATOM 154 CA LYS 56 0.433 1.952 -7.817 1.00 0.00 C ATOM 155 C LYS 56 -0.914 1.217 -7.953 1.00 0.00 C ATOM 156 O LYS 56 -1.658 1.091 -7.014 1.00 0.00 O ATOM 157 N GLU 57 -1.248 0.713 -9.114 1.00 0.00 N ATOM 158 CA GLU 57 -2.439 -0.126 -9.173 1.00 0.00 C ATOM 159 C GLU 57 -2.199 -1.443 -8.410 1.00 0.00 C ATOM 160 O GLU 57 -3.111 -1.939 -7.800 1.00 0.00 O ATOM 161 N PHE 58 -0.947 -1.930 -8.389 1.00 0.00 N ATOM 162 CA PHE 58 -0.569 -3.228 -7.804 1.00 0.00 C ATOM 163 C PHE 58 -0.551 -3.120 -6.300 1.00 0.00 C ATOM 164 O PHE 58 -1.018 -4.008 -5.593 1.00 0.00 O ATOM 165 N ILE 59 0.064 -2.050 -5.829 1.00 0.00 N ATOM 166 CA ILE 59 0.056 -1.686 -4.419 1.00 0.00 C ATOM 167 C ILE 59 -1.376 -1.549 -3.894 1.00 0.00 C ATOM 168 O ILE 59 -1.673 -2.006 -2.801 1.00 0.00 O ATOM 169 N GLU 60 -2.282 -0.972 -4.679 1.00 0.00 N ATOM 170 CA GLU 60 -3.669 -0.773 -4.209 1.00 0.00 C ATOM 171 C GLU 60 -4.467 -2.079 -4.170 1.00 0.00 C ATOM 172 O GLU 60 -5.418 -2.175 -3.403 1.00 0.00 O ATOM 173 N GLY 61 -4.073 -3.059 -5.000 1.00 0.00 N ATOM 174 CA GLY 61 -4.636 -4.434 -4.969 1.00 0.00 C ATOM 175 C GLY 61 -4.075 -5.300 -3.823 1.00 0.00 C ATOM 176 O GLY 61 -4.808 -6.009 -3.160 1.00 0.00 O ATOM 177 N LEU 62 -2.771 -5.223 -3.612 1.00 0.00 N ATOM 178 CA LEU 62 -2.068 -5.967 -2.563 1.00 0.00 C ATOM 179 C LEU 62 -2.252 -5.214 -1.219 1.00 0.00 C ATOM 180 O LEU 62 -1.841 -5.698 -0.136 1.00 0.00 O ATOM 181 N GLY 63 -2.865 -4.020 -1.324 1.00 0.00 N ATOM 182 CA GLY 63 -3.062 -3.091 -0.226 1.00 0.00 C ATOM 183 C GLY 63 -1.797 -2.738 0.543 1.00 0.00 C ATOM 184 O GLY 63 -1.835 -2.765 1.775 1.00 0.00 O ATOM 185 N TYR 64 -0.689 -2.457 -0.162 1.00 0.00 N ATOM 186 CA TYR 64 0.594 -2.043 0.457 1.00 0.00 C ATOM 187 C TYR 64 1.116 -0.746 -0.206 1.00 0.00 C ATOM 188 O TYR 64 0.362 -0.025 -0.859 1.00 0.00 O ATOM 189 N SER 65 2.406 -0.447 -0.042 1.00 0.00 N ATOM 190 CA SER 65 2.969 0.849 -0.434 1.00 0.00 C ATOM 191 C SER 65 3.566 0.902 -1.847 1.00 0.00 C ATOM 192 O SER 65 3.612 -0.087 -2.569 1.00 0.00 O ATOM 193 N ASN 66 4.035 2.086 -2.221 1.00 0.00 N ATOM 194 CA ASN 66 4.659 2.300 -3.517 1.00 0.00 C ATOM 195 C ASN 66 6.087 1.859 -3.454 1.00 0.00 C ATOM 196 O ASN 66 6.520 0.978 -4.177 1.00 0.00 O ATOM 197 N LEU 67 6.833 2.480 -2.561 1.00 0.00 N ATOM 198 CA LEU 67 8.237 2.127 -2.400 1.00 0.00 C ATOM 199 C LEU 67 8.469 0.631 -2.008 1.00 0.00 C ATOM 200 O LEU 67 9.614 0.195 -1.949 1.00 0.00 O ATOM 201 N TYR 68 7.410 -0.145 -1.740 1.00 0.00 N ATOM 202 CA TYR 68 7.580 -1.580 -1.477 1.00 0.00 C ATOM 203 C TYR 68 7.076 -2.512 -2.600 1.00 0.00 C ATOM 204 O TYR 68 7.592 -3.628 -2.726 1.00 0.00 O ATOM 205 N LEU 69 6.075 -2.114 -3.384 1.00 0.00 N ATOM 206 CA LEU 69 5.733 -2.913 -4.571 1.00 0.00 C ATOM 207 C LEU 69 6.917 -2.778 -5.501 1.00 0.00 C ATOM 208 O LEU 69 7.354 -3.748 -6.118 1.00 0.00 O ATOM 209 N LYS 70 7.440 -1.552 -5.555 1.00 0.00 N ATOM 210 CA LYS 70 8.585 -1.205 -6.387 1.00 0.00 C ATOM 211 C LYS 70 9.894 -1.738 -5.818 1.00 0.00 C ATOM 212 O LYS 70 10.956 -1.461 -6.351 1.00 0.00 O ATOM 213 N GLU 71 9.837 -2.493 -4.733 1.00 0.00 N ATOM 214 CA GLU 71 10.991 -3.257 -4.281 1.00 0.00 C ATOM 215 C GLU 71 10.897 -4.677 -4.769 1.00 0.00 C ATOM 216 O GLU 71 11.905 -5.287 -5.123 1.00 0.00 O ATOM 217 N PHE 72 9.682 -5.206 -4.767 1.00 0.00 N ATOM 218 CA PHE 72 9.470 -6.608 -5.106 1.00 0.00 C ATOM 219 C PHE 72 9.467 -6.795 -6.618 1.00 0.00 C ATOM 220 O PHE 72 9.943 -7.818 -7.136 1.00 0.00 O ATOM 221 N TYR 73 8.933 -5.803 -7.320 1.00 0.00 N ATOM 222 CA TYR 73 8.819 -5.879 -8.759 1.00 0.00 C ATOM 223 C TYR 73 10.206 -5.780 -9.354 1.00 0.00 C ATOM 224 O TYR 73 10.633 -6.670 -10.109 1.00 0.00 O ATOM 225 N THR 74 10.894 -4.698 -8.990 1.00 0.00 N ATOM 226 CA THR 74 12.332 -4.507 -9.241 1.00 0.00 C ATOM 227 C THR 74 13.218 -5.684 -8.757 1.00 0.00 C ATOM 228 O THR 74 14.411 -5.743 -9.060 1.00 0.00 O ATOM 229 N PRO 75 12.661 -6.578 -7.961 1.00 0.00 N ATOM 230 CA PRO 75 13.309 -7.840 -7.751 1.00 0.00 C ATOM 231 C PRO 75 12.957 -8.786 -8.893 1.00 0.00 C ATOM 232 O PRO 75 13.847 -9.324 -9.529 1.00 0.00 O ATOM 233 N TYR 76 11.660 -8.935 -9.180 1.00 0.00 N ATOM 234 CA TYR 76 11.174 -9.931 -10.142 1.00 0.00 C ATOM 235 C TYR 76 11.586 -9.636 -11.570 1.00 0.00 C ATOM 236 O TYR 76 11.460 -10.486 -12.436 1.00 0.00 O ATOM 237 N PRO 77 12.029 -8.403 -11.799 1.00 0.00 N ATOM 238 CA PRO 77 12.428 -7.951 -13.112 1.00 0.00 C ATOM 239 C PRO 77 13.737 -8.664 -13.370 1.00 0.00 C ATOM 240 O PRO 77 13.817 -9.464 -14.299 1.00 0.00 O ATOM 241 N ASN 78 14.741 -8.467 -12.495 1.00 0.00 N ATOM 242 CA ASN 78 16.068 -9.101 -12.710 1.00 0.00 C ATOM 243 C ASN 78 16.013 -10.636 -12.710 1.00 0.00 C ATOM 244 O ASN 78 16.956 -11.324 -13.189 1.00 0.00 O ATOM 245 N THR 79 14.879 -11.159 -12.232 1.00 0.00 N ATOM 246 CA THR 79 14.647 -12.622 -12.213 1.00 0.00 C ATOM 247 C THR 79 14.007 -13.159 -13.513 1.00 0.00 C ATOM 248 O THR 79 14.090 -14.339 -13.832 1.00 0.00 O ATOM 249 N LYS 80 13.387 -12.261 -14.265 1.00 0.00 N ATOM 250 CA LYS 80 12.882 -12.521 -15.619 1.00 0.00 C ATOM 251 C LYS 80 11.458 -13.012 -15.622 1.00 0.00 C ATOM 252 O LYS 80 10.987 -13.642 -16.536 1.00 0.00 O ATOM 253 N VAL 81 10.754 -12.612 -14.570 1.00 0.00 N ATOM 254 CA VAL 81 9.379 -12.960 -14.402 1.00 0.00 C ATOM 255 C VAL 81 8.517 -11.825 -14.851 1.00 0.00 C ATOM 256 O VAL 81 7.469 -12.040 -15.434 1.00 0.00 O ATOM 257 N ILE 82 8.959 -10.620 -14.551 1.00 0.00 N ATOM 258 CA ILE 82 8.280 -9.439 -15.033 1.00 0.00 C ATOM 259 C ILE 82 9.120 -8.435 -15.822 1.00 0.00 C ATOM 260 O ILE 82 10.309 -8.323 -15.632 1.00 0.00 O ATOM 261 N GLU 83 8.459 -7.673 -16.687 1.00 0.00 N ATOM 262 CA GLU 83 9.108 -6.588 -17.388 1.00 0.00 C ATOM 263 C GLU 83 8.345 -5.272 -17.145 1.00 0.00 C ATOM 264 O GLU 83 7.204 -5.318 -16.761 1.00 0.00 O ATOM 265 N LEU 84 9.000 -4.129 -17.439 1.00 0.00 N ATOM 266 CA LEU 84 8.441 -2.761 -17.275 1.00 0.00 C ATOM 267 C LEU 84 8.819 -1.721 -18.328 1.00 0.00 C ATOM 268 O LEU 84 9.906 -1.760 -18.873 1.00 0.00 O ATOM 269 N ARG 92 7.895 -0.781 -18.546 1.00 0.00 N ATOM 270 CA ARG 92 8.064 0.438 -19.374 1.00 0.00 C ATOM 271 C ARG 92 8.108 1.657 -18.408 1.00 0.00 C ATOM 272 O ARG 92 7.666 1.644 -17.271 1.00 0.00 O ATOM 273 N ALA 93 5.031 7.143 -13.784 1.00 0.00 N ATOM 274 CA ALA 93 5.006 5.669 -13.342 1.00 0.00 C ATOM 275 C ALA 93 5.370 4.710 -14.455 1.00 0.00 C ATOM 276 O ALA 93 5.201 4.938 -15.666 1.00 0.00 O ATOM 277 N PRO 94 5.620 3.545 -13.919 1.00 0.00 N ATOM 278 CA PRO 94 6.067 2.380 -14.598 1.00 0.00 C ATOM 279 C PRO 94 4.838 1.500 -14.858 1.00 0.00 C ATOM 280 O PRO 94 3.838 1.582 -14.160 1.00 0.00 O ATOM 281 N ILE 95 4.908 0.679 -15.892 1.00 0.00 N ATOM 282 CA ILE 95 3.926 -0.347 -16.093 1.00 0.00 C ATOM 283 C ILE 95 4.611 -1.702 -16.073 1.00 0.00 C ATOM 284 O ILE 95 5.687 -1.891 -16.655 1.00 0.00 O ATOM 285 N ASP 96 3.985 -2.641 -15.357 1.00 0.00 N ATOM 286 CA ASP 96 4.446 -4.015 -15.338 1.00 0.00 C ATOM 287 C ASP 96 3.519 -4.971 -16.016 1.00 0.00 C ATOM 288 O ASP 96 2.287 -4.864 -15.956 1.00 0.00 O ATOM 289 N GLN 97 4.180 -5.942 -16.635 1.00 0.00 N ATOM 290 CA GLN 97 3.549 -7.130 -17.212 1.00 0.00 C ATOM 291 C GLN 97 4.353 -8.409 -16.883 1.00 0.00 C ATOM 292 O GLN 97 5.547 -8.372 -16.484 1.00 0.00 O ATOM 293 N ALA 98 3.701 -9.548 -17.099 1.00 0.00 N ATOM 294 CA ALA 98 4.410 -10.831 -17.190 1.00 0.00 C ATOM 295 C ALA 98 5.377 -10.725 -18.405 1.00 0.00 C ATOM 296 O ALA 98 4.980 -10.268 -19.452 1.00 0.00 O ATOM 297 N GLU 99 6.645 -11.111 -18.202 1.00 0.00 N ATOM 298 CA GLU 99 7.743 -10.935 -19.150 1.00 0.00 C ATOM 299 C GLU 99 7.359 -11.345 -20.580 1.00 0.00 C ATOM 300 O GLU 99 7.606 -10.614 -21.512 1.00 0.00 O ATOM 301 N ILE 100 6.726 -12.510 -20.719 1.00 0.00 N ATOM 302 CA ILE 100 6.328 -13.067 -22.008 1.00 0.00 C ATOM 303 C ILE 100 5.459 -14.239 -21.826 1.00 0.00 C ATOM 304 O ILE 100 5.144 -14.589 -20.693 1.00 0.00 O ATOM 305 N ARG 101 5.045 -14.800 -22.960 1.00 0.00 N ATOM 306 CA ARG 101 4.164 -15.957 -23.066 1.00 0.00 C ATOM 307 C ARG 101 4.631 -17.207 -22.201 1.00 0.00 C ATOM 308 O ARG 101 3.783 -17.912 -21.702 1.00 0.00 O ATOM 309 N LYS 102 5.922 -17.417 -21.934 1.00 0.00 N ATOM 310 CA LYS 102 6.346 -18.566 -21.070 1.00 0.00 C ATOM 311 C LYS 102 5.898 -18.373 -19.651 1.00 0.00 C ATOM 312 O LYS 102 5.346 -19.295 -19.003 1.00 0.00 O ATOM 313 N TYR 103 6.160 -17.163 -19.164 1.00 0.00 N ATOM 314 CA TYR 103 5.630 -16.772 -17.872 1.00 0.00 C ATOM 315 C TYR 103 4.109 -16.886 -17.743 1.00 0.00 C ATOM 316 O TYR 103 3.599 -17.424 -16.718 1.00 0.00 O ATOM 317 N ASN 104 3.368 -16.430 -18.746 1.00 0.00 N ATOM 318 CA ASN 104 1.892 -16.498 -18.667 1.00 0.00 C ATOM 319 C ASN 104 1.473 -17.985 -18.534 1.00 0.00 C ATOM 320 O ASN 104 0.644 -18.340 -17.669 1.00 0.00 O ATOM 321 N GLN 105 2.075 -18.828 -19.389 1.00 0.00 N ATOM 322 CA GLN 105 1.681 -20.247 -19.598 1.00 0.00 C ATOM 323 C GLN 105 1.970 -21.017 -18.310 1.00 0.00 C ATOM 324 O GLN 105 1.166 -21.784 -17.843 1.00 0.00 O ATOM 325 N ILE 106 3.129 -20.715 -17.756 1.00 0.00 N ATOM 326 CA ILE 106 3.699 -21.271 -16.543 1.00 0.00 C ATOM 327 C ILE 106 2.824 -20.916 -15.329 1.00 0.00 C ATOM 328 O ILE 106 2.432 -21.766 -14.553 1.00 0.00 O ATOM 329 N LEU 107 2.567 -19.639 -15.137 1.00 0.00 N ATOM 330 CA LEU 107 1.627 -19.295 -14.096 1.00 0.00 C ATOM 331 C LEU 107 0.220 -19.948 -14.203 1.00 0.00 C ATOM 332 O LEU 107 -0.371 -20.394 -13.188 1.00 0.00 O ATOM 333 N ALA 108 -0.351 -19.960 -15.370 1.00 0.00 N ATOM 334 CA ALA 108 -1.720 -20.482 -15.567 1.00 0.00 C ATOM 335 C ALA 108 -1.846 -22.006 -15.405 1.00 0.00 C ATOM 336 O ALA 108 -2.756 -22.552 -14.745 1.00 0.00 O ATOM 337 N ALA 114 -0.883 -22.705 -15.963 1.00 0.00 N ATOM 338 CA ALA 114 -0.856 -24.156 -15.855 1.00 0.00 C ATOM 339 C ALA 114 -0.686 -24.605 -14.403 1.00 0.00 C ATOM 340 O ALA 114 -1.402 -25.491 -13.925 1.00 0.00 O ATOM 341 N PHE 115 0.218 -23.923 -13.694 1.00 0.00 N ATOM 342 CA PHE 115 0.426 -24.206 -12.311 1.00 0.00 C ATOM 343 C PHE 115 -0.832 -24.008 -11.515 1.00 0.00 C ATOM 344 O PHE 115 -1.251 -24.881 -10.742 1.00 0.00 O ATOM 345 N ILE 116 -1.428 -22.882 -11.718 1.00 0.00 N ATOM 346 CA ILE 116 -2.621 -22.512 -10.947 1.00 0.00 C ATOM 347 C ILE 116 -3.856 -23.338 -11.374 1.00 0.00 C ATOM 348 O ILE 116 -4.549 -23.844 -10.495 1.00 0.00 O ATOM 349 N ASN 117 -4.065 -23.581 -12.683 1.00 0.00 N ATOM 350 CA ASN 117 -5.129 -24.581 -13.080 1.00 0.00 C ATOM 351 C ASN 117 -4.887 -26.000 -12.527 1.00 0.00 C ATOM 352 O ASN 117 -5.786 -26.618 -11.980 1.00 0.00 O ATOM 353 N ALA 118 -3.641 -26.493 -12.598 1.00 0.00 N ATOM 354 CA ALA 118 -3.384 -27.858 -12.075 1.00 0.00 C ATOM 355 C ALA 118 -3.691 -27.925 -10.556 1.00 0.00 C ATOM 356 O ALA 118 -4.336 -28.846 -10.104 1.00 0.00 O ATOM 357 N LEU 119 -3.283 -26.918 -9.801 1.00 0.00 N ATOM 358 CA LEU 119 -3.542 -26.888 -8.342 1.00 0.00 C ATOM 359 C LEU 119 -5.028 -26.825 -8.052 1.00 0.00 C ATOM 360 O LEU 119 -5.529 -27.334 -7.054 1.00 0.00 O ATOM 361 N VAL 120 -5.750 -26.265 -8.985 1.00 0.00 N ATOM 362 CA VAL 120 -7.185 -26.092 -8.816 1.00 0.00 C ATOM 363 C VAL 120 -7.958 -27.391 -8.976 1.00 0.00 C ATOM 364 O VAL 120 -8.980 -27.525 -8.432 1.00 0.00 O ATOM 365 N ASN 121 -7.442 -28.320 -9.761 1.00 0.00 N ATOM 366 CA ASN 121 -8.038 -29.646 -9.956 1.00 0.00 C ATOM 367 C ASN 121 -8.313 -30.280 -8.614 1.00 0.00 C ATOM 368 O ASN 121 -9.253 -31.008 -8.474 1.00 0.00 O ATOM 369 N SER 122 -7.433 -30.048 -7.650 1.00 0.00 N ATOM 370 CA SER 122 -7.668 -30.427 -6.270 1.00 0.00 C ATOM 371 C SER 122 -7.873 -31.958 -6.079 1.00 0.00 C ATOM 372 O SER 122 -7.609 -32.829 -6.974 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 372 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 63.97 65.7 178 66.9 266 ARMSMC SECONDARY STRUCTURE . . 55.92 74.4 133 75.6 176 ARMSMC SURFACE . . . . . . . . 69.78 65.3 98 62.0 158 ARMSMC BURIED . . . . . . . . 56.03 66.2 80 74.1 108 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 112 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 105 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 74 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 68 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 93 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 75 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 63 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 57 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 25 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.32 (Number of atoms: 93) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.32 93 69.4 134 CRMSCA CRN = ALL/NP . . . . . 0.1647 CRMSCA SECONDARY STRUCTURE . . 15.27 69 78.4 88 CRMSCA SURFACE . . . . . . . . 15.40 51 63.8 80 CRMSCA BURIED . . . . . . . . 15.21 42 77.8 54 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.25 372 56.4 660 CRMSMC SECONDARY STRUCTURE . . 15.21 276 63.4 435 CRMSMC SURFACE . . . . . . . . 15.37 204 51.6 395 CRMSMC BURIED . . . . . . . . 15.09 168 63.4 265 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1623 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1559 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 1096 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 961 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 662 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.25 372 17.2 2159 CRMSALL SECONDARY STRUCTURE . . 15.21 276 19.1 1448 CRMSALL SURFACE . . . . . . . . 15.37 204 15.9 1281 CRMSALL BURIED . . . . . . . . 15.09 168 19.1 878 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.167 1.000 0.500 93 69.4 134 ERRCA SECONDARY STRUCTURE . . 14.366 1.000 0.500 69 78.4 88 ERRCA SURFACE . . . . . . . . 14.100 1.000 0.500 51 63.8 80 ERRCA BURIED . . . . . . . . 14.248 1.000 0.500 42 77.8 54 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.075 1.000 0.500 372 56.4 660 ERRMC SECONDARY STRUCTURE . . 14.260 1.000 0.500 276 63.4 435 ERRMC SURFACE . . . . . . . . 14.064 1.000 0.500 204 51.6 395 ERRMC BURIED . . . . . . . . 14.087 1.000 0.500 168 63.4 265 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1623 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1559 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1096 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 961 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 662 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.075 1.000 0.500 372 17.2 2159 ERRALL SECONDARY STRUCTURE . . 14.260 1.000 0.500 276 19.1 1448 ERRALL SURFACE . . . . . . . . 14.064 1.000 0.500 204 15.9 1281 ERRALL BURIED . . . . . . . . 14.087 1.000 0.500 168 19.1 878 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 27 93 134 DISTCA CA (P) 0.00 0.00 0.00 2.99 20.15 134 DISTCA CA (RMS) 0.00 0.00 0.00 4.08 7.40 DISTCA ALL (N) 0 0 1 17 110 372 2159 DISTALL ALL (P) 0.00 0.00 0.05 0.79 5.09 2159 DISTALL ALL (RMS) 0.00 0.00 2.48 4.20 7.37 DISTALL END of the results output