####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 56 ( 224), selected 56 , name T0551AL396_1-D1 # Molecule2: number of CA atoms 63 ( 510), selected 56 , name T0551-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0551AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 50 - 71 4.82 13.90 LCS_AVERAGE: 25.57 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 59 - 68 1.98 13.65 LONGEST_CONTINUOUS_SEGMENT: 10 60 - 69 1.87 14.26 LCS_AVERAGE: 8.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 60 - 68 0.24 15.37 LCS_AVERAGE: 6.92 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 56 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 9 F 9 3 3 10 0 10 11 11 11 13 13 13 14 17 19 20 23 26 28 32 32 34 34 35 LCS_GDT E 10 E 10 3 3 11 3 3 11 11 11 11 11 13 14 17 17 20 25 29 30 32 34 34 36 38 LCS_GDT I 11 I 11 3 4 11 3 3 4 4 4 5 7 10 13 17 19 22 25 30 31 32 34 36 36 38 LCS_GDT E 12 E 12 3 4 11 3 3 4 4 5 5 7 8 10 12 14 19 20 21 24 26 28 31 33 35 LCS_GDT E 13 E 13 3 4 11 3 3 4 4 5 5 7 9 13 14 17 20 21 24 26 28 31 33 34 35 LCS_GDT H 14 H 14 3 4 12 3 3 4 5 5 5 9 12 14 15 20 25 26 30 31 32 34 36 36 38 LCS_GDT L 15 L 15 3 4 12 3 3 4 5 5 7 9 12 14 15 17 22 25 30 31 32 34 36 36 38 LCS_GDT L 16 L 16 3 4 12 3 3 3 4 4 5 6 8 11 14 17 20 25 30 31 32 34 36 36 38 LCS_GDT T 17 T 17 3 4 12 3 3 4 5 5 6 12 13 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT L 18 L 18 3 4 12 3 3 4 6 10 11 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT S 19 S 19 3 6 13 3 4 6 6 10 11 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT E 20 E 20 3 6 13 0 3 4 5 6 7 7 9 13 15 17 19 24 27 29 32 34 36 36 38 LCS_GDT N 21 N 21 4 6 13 4 4 5 5 6 6 7 8 8 9 12 14 17 18 20 23 26 30 33 34 LCS_GDT E 22 E 22 4 6 13 4 4 5 5 6 6 7 8 8 9 10 11 13 16 17 19 20 23 25 27 LCS_GDT K 23 K 23 4 6 13 4 4 5 5 6 6 7 8 8 9 10 13 15 17 20 23 24 25 25 27 LCS_GDT G 24 G 24 4 6 13 4 4 5 5 6 6 7 8 8 9 10 12 14 16 17 23 24 25 25 26 LCS_GDT W 25 W 25 3 4 13 3 3 3 3 5 6 6 8 8 9 10 13 15 17 20 23 26 27 30 32 LCS_GDT T 26 T 26 3 4 13 3 3 3 3 4 6 7 8 8 9 12 14 17 18 20 23 27 28 30 34 LCS_GDT K 27 K 27 3 3 13 3 3 3 4 5 6 7 8 9 9 18 18 18 22 23 24 27 29 32 34 LCS_GDT E 28 E 28 3 3 13 3 3 3 8 10 10 13 15 16 19 21 23 26 28 29 32 34 36 36 38 LCS_GDT I 29 I 29 3 3 13 1 3 4 8 10 10 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT N 30 N 30 3 3 13 3 7 8 11 11 13 13 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT R 31 R 31 3 3 13 3 3 3 6 6 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT V 32 V 32 3 3 12 4 8 10 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT S 33 S 33 3 4 12 0 3 4 6 6 7 8 12 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT F 34 F 34 3 4 12 3 3 4 4 6 9 11 12 14 19 20 23 26 30 31 32 34 36 36 38 LCS_GDT N 35 N 35 3 4 11 3 3 4 4 6 9 11 11 13 15 19 25 26 30 31 32 34 36 36 38 LCS_GDT G 36 G 36 3 4 11 3 3 4 4 4 4 6 8 11 15 20 25 26 30 31 32 34 36 36 38 LCS_GDT R 44 R 44 3 4 12 0 3 4 4 5 5 6 9 10 12 16 19 21 23 24 26 27 29 32 34 LCS_GDT A 45 A 45 6 6 13 3 5 6 6 6 6 7 9 10 12 17 19 21 23 24 26 27 28 29 29 LCS_GDT W 46 W 46 6 6 13 3 5 6 6 6 6 9 11 13 14 17 19 21 23 24 26 27 28 32 34 LCS_GDT S 47 S 47 6 6 13 3 5 6 6 6 6 7 9 10 12 17 19 21 23 24 26 27 28 31 34 LCS_GDT P 48 P 48 6 6 13 3 4 6 6 6 6 7 9 10 11 11 13 13 21 21 25 27 28 29 29 LCS_GDT D 49 D 49 6 6 13 3 5 6 6 6 6 7 9 10 11 12 17 19 23 24 26 27 28 31 32 LCS_GDT H 50 H 50 6 6 22 3 5 6 6 6 6 8 11 13 15 17 19 21 23 25 26 28 31 32 34 LCS_GDT T 51 T 51 3 4 22 3 3 3 6 6 6 7 9 10 11 17 19 21 24 25 27 30 33 36 37 LCS_GDT K 52 K 52 3 4 22 1 3 3 6 6 6 6 8 9 15 17 19 21 25 27 30 34 36 36 38 LCS_GDT M 53 M 53 3 4 22 1 3 3 6 6 7 9 12 14 17 20 23 26 30 31 32 34 36 36 38 LCS_GDT G 54 G 54 3 4 22 0 3 4 5 5 5 8 8 13 15 17 20 22 24 26 29 34 36 36 38 LCS_GDT K 55 K 55 3 4 22 1 3 4 5 5 7 9 10 13 15 18 22 23 25 29 32 34 36 36 38 LCS_GDT G 56 G 56 3 4 22 1 3 4 5 8 9 11 12 15 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT I 57 I 57 3 3 22 0 3 4 6 8 10 11 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT T 58 T 58 3 3 22 0 3 4 6 8 10 11 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT L 59 L 59 3 10 22 0 3 3 5 7 10 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT S 60 S 60 9 10 22 9 10 11 11 11 13 13 15 16 19 21 25 26 30 31 32 34 36 36 38 LCS_GDT N 61 N 61 9 10 22 9 10 11 11 11 13 14 15 16 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT E 62 E 62 9 10 22 9 10 11 11 11 13 14 15 16 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT E 63 E 63 9 10 22 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT F 64 F 64 9 10 22 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT Q 65 Q 65 9 10 22 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT T 66 T 66 9 10 22 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT M 67 M 67 9 10 22 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT V 68 V 68 9 10 22 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT D 69 D 69 3 10 22 3 3 3 5 9 11 12 15 17 20 21 25 26 30 31 32 34 36 36 38 LCS_GDT A 70 A 70 3 4 22 3 3 3 3 4 4 8 11 13 15 17 19 21 23 25 26 27 29 36 38 LCS_GDT F 71 F 71 3 4 22 3 3 3 5 7 10 11 15 16 18 19 23 25 29 31 32 34 36 36 38 LCS_AVERAGE LCS_A: 13.70 ( 6.92 8.62 25.57 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 10 11 11 11 13 14 15 17 20 21 25 26 30 31 32 34 36 36 38 GDT PERCENT_AT 14.29 15.87 17.46 17.46 17.46 20.63 22.22 23.81 26.98 31.75 33.33 39.68 41.27 47.62 49.21 50.79 53.97 57.14 57.14 60.32 GDT RMS_LOCAL 0.24 0.38 0.59 0.59 0.59 1.67 2.51 2.62 3.33 3.59 3.65 4.38 4.39 5.02 5.12 5.25 5.50 5.92 5.90 6.20 GDT RMS_ALL_AT 15.37 15.08 15.35 15.35 15.35 14.71 12.24 12.40 11.52 11.72 11.80 11.79 11.75 11.77 11.76 11.69 11.78 11.29 11.48 11.38 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 9 F 9 7.882 7 0.576 0.576 10.111 4.286 1.558 LGA E 10 E 10 8.420 5 0.623 0.623 9.646 4.286 1.905 LGA I 11 I 11 7.278 4 0.576 0.576 11.264 5.952 2.976 LGA E 12 E 12 13.546 5 0.067 0.067 15.837 0.000 0.000 LGA E 13 E 13 13.485 5 0.612 0.612 13.485 0.000 0.000 LGA H 14 H 14 8.123 6 0.603 0.603 10.588 1.667 0.667 LGA L 15 L 15 10.322 4 0.059 0.059 11.432 0.357 0.179 LGA L 16 L 16 10.835 4 0.573 0.573 10.835 1.071 0.536 LGA T 17 T 17 5.724 3 0.658 0.658 7.595 21.548 12.313 LGA L 18 L 18 2.323 4 0.221 0.221 3.208 69.405 34.702 LGA S 19 S 19 3.107 2 0.548 0.548 6.708 40.595 27.063 LGA E 20 E 20 8.463 5 0.647 0.647 11.517 5.476 2.434 LGA N 21 N 21 12.805 4 0.388 0.388 14.749 0.000 0.000 LGA E 22 E 22 19.038 5 0.062 0.062 21.695 0.000 0.000 LGA K 23 K 23 21.502 5 0.307 0.307 21.502 0.000 0.000 LGA G 24 G 24 16.104 0 0.180 0.180 17.608 0.000 0.000 LGA W 25 W 25 12.977 10 0.644 0.644 14.230 0.000 0.000 LGA T 26 T 26 13.120 3 0.637 0.637 13.261 0.000 0.000 LGA K 27 K 27 11.840 5 0.575 0.575 11.840 0.000 0.000 LGA E 28 E 28 6.586 5 0.604 0.604 8.100 11.310 5.026 LGA I 29 I 29 4.255 4 0.602 0.602 5.708 31.786 15.893 LGA N 30 N 30 4.920 4 0.603 0.603 5.759 31.786 15.893 LGA R 31 R 31 3.324 7 0.626 0.626 3.324 59.167 21.515 LGA V 32 V 32 1.659 3 0.631 0.631 2.750 64.881 37.075 LGA S 33 S 33 6.256 2 0.544 0.544 8.122 15.119 10.079 LGA F 34 F 34 10.639 7 0.621 0.621 10.639 0.833 0.303 LGA N 35 N 35 9.499 4 0.437 0.437 9.953 4.048 2.024 LGA G 36 G 36 6.306 0 0.315 0.315 7.125 22.619 22.619 LGA R 44 R 44 18.793 7 0.670 0.670 21.630 0.000 0.000 LGA A 45 A 45 22.844 1 0.654 0.654 22.893 0.000 0.000 LGA W 46 W 46 22.766 10 0.042 0.042 25.525 0.000 0.000 LGA S 47 S 47 27.448 2 0.227 0.227 27.448 0.000 0.000 LGA P 48 P 48 27.014 3 0.033 0.033 27.571 0.000 0.000 LGA D 49 D 49 26.314 4 0.107 0.107 26.769 0.000 0.000 LGA H 50 H 50 20.839 6 0.282 0.282 23.021 0.000 0.000 LGA T 51 T 51 16.663 3 0.646 0.646 18.617 0.000 0.000 LGA K 52 K 52 15.356 5 0.563 0.563 15.970 0.000 0.000 LGA M 53 M 53 10.617 4 0.606 0.606 12.432 0.000 0.000 LGA G 54 G 54 15.398 0 0.532 0.532 15.398 0.000 0.000 LGA K 55 K 55 15.501 5 0.671 0.671 15.768 0.000 0.000 LGA G 56 G 56 9.587 0 0.603 0.603 11.314 2.024 2.024 LGA I 57 I 57 7.841 4 0.606 0.606 8.445 7.976 3.988 LGA T 58 T 58 7.151 3 0.674 0.674 7.363 13.690 7.823 LGA L 59 L 59 3.595 4 0.604 0.604 4.596 44.167 22.083 LGA S 60 S 60 3.679 2 0.623 0.623 3.679 57.619 38.413 LGA N 61 N 61 2.175 4 0.067 0.067 2.812 69.048 34.524 LGA E 62 E 62 2.219 5 0.025 0.025 2.302 70.952 31.534 LGA E 63 E 63 2.103 5 0.030 0.030 2.158 70.952 31.534 LGA F 64 F 64 1.352 7 0.066 0.066 1.513 81.548 29.654 LGA Q 65 Q 65 0.854 5 0.010 0.010 1.585 88.452 39.312 LGA T 66 T 66 0.408 3 0.036 0.036 1.035 92.976 53.129 LGA M 67 M 67 1.810 4 0.159 0.159 2.400 70.952 35.476 LGA V 68 V 68 3.104 3 0.332 0.332 3.104 57.381 32.789 LGA D 69 D 69 4.957 4 0.651 0.651 7.938 27.262 13.631 LGA A 70 A 70 10.205 1 0.431 0.431 11.369 1.310 1.048 LGA F 71 F 71 6.221 7 0.584 0.584 7.478 11.786 4.286 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 56 224 224 100.00 457 224 49.02 63 SUMMARY(RMSD_GDC): 10.756 10.635 10.635 18.481 9.460 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 56 63 4.0 15 2.62 26.984 22.225 0.551 LGA_LOCAL RMSD: 2.622 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.397 Number of assigned atoms: 56 Std_ASGN_ATOMS RMSD: 10.756 Standard rmsd on all 56 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.096870 * X + 0.455877 * Y + 0.884756 * Z + 27.211840 Y_new = 0.542709 * X + -0.769352 * Y + 0.336994 * Z + 15.461733 Z_new = 0.834316 * X + 0.447520 * Y + -0.321935 * Z + 21.994762 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.394163 -0.986891 2.194408 [DEG: 79.8797 -56.5447 125.7303 ] ZXZ: 1.934721 1.898569 1.078461 [DEG: 110.8513 108.7800 61.7913 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0551AL396_1-D1 REMARK 2: T0551-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0551AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 56 63 4.0 15 2.62 22.225 10.76 REMARK ---------------------------------------------------------- MOLECULE T0551AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2hp8 ATOM 33 N PHE 9 27.046 20.464 28.775 1.00 0.00 N ATOM 34 CA PHE 9 26.559 21.763 29.213 1.00 0.00 C ATOM 35 C PHE 9 26.450 22.717 28.018 1.00 0.00 C ATOM 36 O PHE 9 25.411 23.354 27.833 1.00 0.00 O ATOM 37 N GLU 10 27.491 22.770 27.177 1.00 0.00 N ATOM 38 CA GLU 10 27.508 23.579 25.970 1.00 0.00 C ATOM 39 C GLU 10 26.403 23.189 24.996 1.00 0.00 C ATOM 40 O GLU 10 25.802 24.094 24.430 1.00 0.00 O ATOM 41 N ILE 11 26.079 21.901 24.816 1.00 0.00 N ATOM 42 CA ILE 11 24.941 21.491 24.010 1.00 0.00 C ATOM 43 C ILE 11 23.668 22.095 24.583 1.00 0.00 C ATOM 44 O ILE 11 22.893 22.686 23.828 1.00 0.00 O ATOM 45 N GLU 12 23.447 21.948 25.896 1.00 0.00 N ATOM 46 CA GLU 12 22.207 22.383 26.506 1.00 0.00 C ATOM 47 C GLU 12 22.057 23.885 26.313 1.00 0.00 C ATOM 48 O GLU 12 21.033 24.330 25.800 1.00 0.00 O ATOM 49 N GLU 13 23.088 24.657 26.672 1.00 0.00 N ATOM 50 CA GLU 13 23.074 26.111 26.601 1.00 0.00 C ATOM 51 C GLU 13 23.064 26.611 25.161 1.00 0.00 C ATOM 52 O GLU 13 22.344 27.570 24.879 1.00 0.00 O ATOM 53 N HIS 14 23.792 25.951 24.247 1.00 0.00 N ATOM 54 CA HIS 14 23.690 26.207 22.818 1.00 0.00 C ATOM 55 C HIS 14 22.233 26.120 22.424 1.00 0.00 C ATOM 56 O HIS 14 21.749 26.996 21.711 1.00 0.00 O ATOM 57 N LEU 15 21.536 25.077 22.882 1.00 0.00 N ATOM 58 CA LEU 15 20.158 24.871 22.512 1.00 0.00 C ATOM 59 C LEU 15 19.339 26.094 22.907 1.00 0.00 C ATOM 60 O LEU 15 18.583 26.591 22.086 1.00 0.00 O ATOM 61 N LEU 16 19.504 26.618 24.121 1.00 0.00 N ATOM 62 CA LEU 16 18.781 27.799 24.596 1.00 0.00 C ATOM 63 C LEU 16 19.139 29.022 23.755 1.00 0.00 C ATOM 64 O LEU 16 18.236 29.717 23.289 1.00 0.00 O ATOM 65 N THR 17 20.428 29.216 23.459 1.00 0.00 N ATOM 66 CA THR 17 20.902 30.247 22.543 1.00 0.00 C ATOM 67 C THR 17 20.353 30.085 21.113 1.00 0.00 C ATOM 68 O THR 17 20.444 31.026 20.327 1.00 0.00 O ATOM 69 N LEU 18 19.771 28.927 20.767 1.00 0.00 N ATOM 70 CA LEU 18 19.254 28.600 19.447 1.00 0.00 C ATOM 71 C LEU 18 17.762 28.235 19.512 1.00 0.00 C ATOM 72 O LEU 18 17.232 27.745 18.522 1.00 0.00 O ATOM 73 N SER 19 17.067 28.472 20.640 1.00 0.00 N ATOM 74 CA SER 19 15.647 28.157 20.837 1.00 0.00 C ATOM 75 C SER 19 15.327 26.707 20.477 1.00 0.00 C ATOM 76 O SER 19 14.333 26.386 19.831 1.00 0.00 O ATOM 77 N GLU 20 16.224 25.840 20.926 1.00 0.00 N ATOM 78 CA GLU 20 16.156 24.401 20.968 1.00 0.00 C ATOM 79 C GLU 20 16.313 23.734 19.610 1.00 0.00 C ATOM 80 O GLU 20 16.111 22.528 19.461 1.00 0.00 O ATOM 81 N ASN 21 16.781 24.528 18.646 1.00 0.00 N ATOM 82 CA ASN 21 17.207 24.093 17.342 1.00 0.00 C ATOM 83 C ASN 21 18.508 23.294 17.445 1.00 0.00 C ATOM 84 O ASN 21 19.613 23.804 17.241 1.00 0.00 O ATOM 85 N GLU 22 18.348 21.999 17.719 1.00 0.00 N ATOM 86 CA GLU 22 19.358 20.957 17.651 1.00 0.00 C ATOM 87 C GLU 22 20.013 20.907 16.260 1.00 0.00 C ATOM 88 O GLU 22 21.096 20.342 16.123 1.00 0.00 O ATOM 89 N LYS 23 19.374 21.508 15.243 1.00 0.00 N ATOM 90 CA LYS 23 19.933 21.778 13.930 1.00 0.00 C ATOM 91 C LYS 23 21.150 22.699 14.049 1.00 0.00 C ATOM 92 O LYS 23 22.229 22.359 13.574 1.00 0.00 O ATOM 93 N GLY 24 21.001 23.858 14.701 1.00 0.00 N ATOM 94 CA GLY 24 22.088 24.810 14.885 1.00 0.00 C ATOM 95 C GLY 24 23.148 24.215 15.809 1.00 0.00 C ATOM 96 O GLY 24 24.343 24.267 15.517 1.00 0.00 O ATOM 97 N TRP 25 22.708 23.572 16.895 1.00 0.00 N ATOM 98 CA TRP 25 23.570 22.873 17.828 1.00 0.00 C ATOM 99 C TRP 25 24.161 21.584 17.252 1.00 0.00 C ATOM 100 O TRP 25 24.936 20.955 17.964 1.00 0.00 O ATOM 101 N THR 26 23.917 21.216 15.982 1.00 0.00 N ATOM 102 CA THR 26 24.651 20.109 15.352 1.00 0.00 C ATOM 103 C THR 26 26.165 20.309 15.460 1.00 0.00 C ATOM 104 O THR 26 26.870 19.317 15.621 1.00 0.00 O ATOM 105 N LYS 27 26.669 21.552 15.405 1.00 0.00 N ATOM 106 CA LYS 27 28.090 21.855 15.547 1.00 0.00 C ATOM 107 C LYS 27 28.628 21.370 16.887 1.00 0.00 C ATOM 108 O LYS 27 29.601 20.623 16.962 1.00 0.00 O ATOM 109 N GLU 28 27.998 21.841 17.956 1.00 0.00 N ATOM 110 CA GLU 28 28.433 21.579 19.306 1.00 0.00 C ATOM 111 C GLU 28 28.120 20.127 19.685 1.00 0.00 C ATOM 112 O GLU 28 28.907 19.492 20.380 1.00 0.00 O ATOM 113 N ILE 29 27.021 19.562 19.168 1.00 0.00 N ATOM 114 CA ILE 29 26.708 18.150 19.277 1.00 0.00 C ATOM 115 C ILE 29 27.832 17.363 18.640 1.00 0.00 C ATOM 116 O ILE 29 28.307 16.418 19.260 1.00 0.00 O ATOM 117 N ASN 30 28.316 17.784 17.468 1.00 0.00 N ATOM 118 CA ASN 30 29.470 17.173 16.847 1.00 0.00 C ATOM 119 C ASN 30 30.656 17.160 17.791 1.00 0.00 C ATOM 120 O ASN 30 31.418 16.192 17.793 1.00 0.00 O ATOM 121 N ARG 31 30.799 18.191 18.626 1.00 0.00 N ATOM 122 CA ARG 31 31.880 18.169 19.558 1.00 0.00 C ATOM 123 C ARG 31 31.630 17.141 20.674 1.00 0.00 C ATOM 124 O ARG 31 32.564 16.427 21.036 1.00 0.00 O ATOM 125 N VAL 32 30.401 17.006 21.196 1.00 0.00 N ATOM 126 CA VAL 32 30.102 15.946 22.155 1.00 0.00 C ATOM 127 C VAL 32 30.228 14.566 21.527 1.00 0.00 C ATOM 128 O VAL 32 30.607 13.631 22.220 1.00 0.00 O ATOM 129 N SER 33 29.963 14.433 20.230 1.00 0.00 N ATOM 130 CA SER 33 30.148 13.199 19.483 1.00 0.00 C ATOM 131 C SER 33 31.614 12.796 19.555 1.00 0.00 C ATOM 132 O SER 33 31.969 11.715 20.024 1.00 0.00 O ATOM 133 N PHE 34 32.456 13.715 19.082 1.00 0.00 N ATOM 134 CA PHE 34 33.910 13.553 19.051 1.00 0.00 C ATOM 135 C PHE 34 34.472 13.362 20.460 1.00 0.00 C ATOM 136 O PHE 34 35.415 12.590 20.638 1.00 0.00 O ATOM 137 N ASN 35 33.887 14.037 21.454 1.00 0.00 N ATOM 138 CA ASN 35 34.200 13.832 22.851 1.00 0.00 C ATOM 139 C ASN 35 33.852 12.406 23.239 1.00 0.00 C ATOM 140 O ASN 35 34.667 11.720 23.831 1.00 0.00 O ATOM 141 N GLY 36 32.644 11.951 22.920 1.00 0.00 N ATOM 142 CA GLY 36 32.116 10.677 23.365 1.00 0.00 C ATOM 143 C GLY 36 32.919 9.513 22.812 1.00 0.00 C ATOM 144 O GLY 36 33.349 8.622 23.545 1.00 0.00 O ATOM 145 N ARG 44 33.165 9.572 21.508 1.00 0.00 N ATOM 146 CA ARG 44 33.877 8.558 20.763 1.00 0.00 C ATOM 147 C ARG 44 35.356 8.467 21.152 1.00 0.00 C ATOM 148 O ARG 44 36.065 7.604 20.642 1.00 0.00 O ATOM 149 N ALA 45 35.833 9.336 22.053 1.00 0.00 N ATOM 150 CA ALA 45 37.190 9.364 22.530 1.00 0.00 C ATOM 151 C ALA 45 37.404 8.357 23.667 1.00 0.00 C ATOM 152 O ALA 45 38.529 8.200 24.137 1.00 0.00 O ATOM 153 N TRP 46 36.327 7.706 24.131 1.00 0.00 N ATOM 154 CA TRP 46 36.288 6.900 25.327 1.00 0.00 C ATOM 155 C TRP 46 35.474 5.626 25.089 1.00 0.00 C ATOM 156 O TRP 46 34.659 5.582 24.161 1.00 0.00 O ATOM 157 N SER 47 35.628 4.595 25.941 1.00 0.00 N ATOM 158 CA SER 47 34.688 3.483 25.982 1.00 0.00 C ATOM 159 C SER 47 33.390 4.097 26.526 1.00 0.00 C ATOM 160 O SER 47 33.331 4.430 27.702 1.00 0.00 O ATOM 161 N PRO 48 32.366 4.264 25.685 1.00 0.00 N ATOM 162 CA PRO 48 31.179 5.113 25.898 1.00 0.00 C ATOM 163 C PRO 48 30.602 5.159 27.313 1.00 0.00 C ATOM 164 O PRO 48 30.310 6.243 27.820 1.00 0.00 O ATOM 165 N ASP 49 30.503 4.002 27.970 1.00 0.00 N ATOM 166 CA ASP 49 30.031 3.871 29.349 1.00 0.00 C ATOM 167 C ASP 49 30.835 4.694 30.368 1.00 0.00 C ATOM 168 O ASP 49 30.348 4.912 31.475 1.00 0.00 O ATOM 169 N HIS 50 32.021 5.197 29.992 1.00 0.00 N ATOM 170 CA HIS 50 32.860 6.153 30.699 1.00 0.00 C ATOM 171 C HIS 50 32.074 7.366 31.173 1.00 0.00 C ATOM 172 O HIS 50 32.441 7.945 32.197 1.00 0.00 O ATOM 173 N THR 51 31.070 7.793 30.407 1.00 0.00 N ATOM 174 CA THR 51 30.391 9.047 30.607 1.00 0.00 C ATOM 175 C THR 51 28.896 8.873 30.411 1.00 0.00 C ATOM 176 O THR 51 28.433 8.167 29.510 1.00 0.00 O ATOM 177 N LYS 52 28.144 9.561 31.268 1.00 0.00 N ATOM 178 CA LYS 52 26.699 9.561 31.272 1.00 0.00 C ATOM 179 C LYS 52 26.204 10.299 30.033 1.00 0.00 C ATOM 180 O LYS 52 25.424 9.749 29.260 1.00 0.00 O ATOM 181 N MET 53 26.676 11.532 29.818 1.00 0.00 N ATOM 182 CA MET 53 26.238 12.340 28.690 1.00 0.00 C ATOM 183 C MET 53 26.605 11.653 27.373 1.00 0.00 C ATOM 184 O MET 53 25.792 11.648 26.452 1.00 0.00 O ATOM 185 N GLY 54 27.787 11.024 27.297 1.00 0.00 N ATOM 186 CA GLY 54 28.236 10.278 26.133 1.00 0.00 C ATOM 187 C GLY 54 27.347 9.040 25.934 1.00 0.00 C ATOM 188 O GLY 54 26.971 8.714 24.805 1.00 0.00 O ATOM 189 N LYS 55 26.941 8.385 27.027 1.00 0.00 N ATOM 190 CA LYS 55 25.985 7.289 26.976 1.00 0.00 C ATOM 191 C LYS 55 24.607 7.772 26.505 1.00 0.00 C ATOM 192 O LYS 55 23.842 6.962 25.984 1.00 0.00 O ATOM 193 N GLY 56 24.308 9.077 26.618 1.00 0.00 N ATOM 194 CA GLY 56 23.138 9.694 25.994 1.00 0.00 C ATOM 195 C GLY 56 23.349 9.969 24.516 1.00 0.00 C ATOM 196 O GLY 56 22.411 10.048 23.723 1.00 0.00 O ATOM 197 N ILE 57 24.607 10.136 24.146 1.00 0.00 N ATOM 198 CA ILE 57 25.026 10.684 22.895 1.00 0.00 C ATOM 199 C ILE 57 24.999 9.727 21.750 1.00 0.00 C ATOM 200 O ILE 57 24.530 10.066 20.678 1.00 0.00 O ATOM 201 N THR 58 25.498 8.528 21.981 1.00 0.00 N ATOM 202 CA THR 58 25.404 7.480 20.988 1.00 0.00 C ATOM 203 C THR 58 23.927 7.107 20.736 1.00 0.00 C ATOM 204 O THR 58 23.583 6.707 19.622 1.00 0.00 O ATOM 205 N LEU 59 23.024 7.354 21.702 1.00 0.00 N ATOM 206 CA LEU 59 21.584 7.275 21.474 1.00 0.00 C ATOM 207 C LEU 59 21.112 8.474 20.644 1.00 0.00 C ATOM 208 O LEU 59 20.328 8.298 19.715 1.00 0.00 O ATOM 209 N SER 60 21.591 9.685 20.951 1.00 0.00 N ATOM 210 CA SER 60 21.302 10.888 20.175 1.00 0.00 C ATOM 211 C SER 60 21.778 10.731 18.725 1.00 0.00 C ATOM 212 O SER 60 21.064 11.116 17.806 1.00 0.00 O ATOM 213 N ASN 61 22.952 10.140 18.503 1.00 0.00 N ATOM 214 CA ASN 61 23.508 9.835 17.193 1.00 0.00 C ATOM 215 C ASN 61 22.560 8.904 16.449 1.00 0.00 C ATOM 216 O ASN 61 22.191 9.209 15.318 1.00 0.00 O ATOM 217 N GLU 62 22.115 7.818 17.094 1.00 0.00 N ATOM 218 CA GLU 62 21.089 6.961 16.516 1.00 0.00 C ATOM 219 C GLU 62 19.842 7.783 16.192 1.00 0.00 C ATOM 220 O GLU 62 19.355 7.674 15.076 1.00 0.00 O ATOM 221 N GLU 63 19.352 8.620 17.113 1.00 0.00 N ATOM 222 CA GLU 63 18.173 9.457 16.907 1.00 0.00 C ATOM 223 C GLU 63 18.332 10.325 15.657 1.00 0.00 C ATOM 224 O GLU 63 17.451 10.352 14.805 1.00 0.00 O ATOM 225 N PHE 64 19.472 10.996 15.523 1.00 0.00 N ATOM 226 CA PHE 64 19.767 11.887 14.408 1.00 0.00 C ATOM 227 C PHE 64 19.878 11.113 13.088 1.00 0.00 C ATOM 228 O PHE 64 19.570 11.648 12.021 1.00 0.00 O ATOM 229 N GLN 65 20.319 9.854 13.154 1.00 0.00 N ATOM 230 CA GLN 65 20.501 8.976 12.009 1.00 0.00 C ATOM 231 C GLN 65 19.147 8.433 11.579 1.00 0.00 C ATOM 232 O GLN 65 18.841 8.426 10.393 1.00 0.00 O ATOM 233 N THR 66 18.316 8.043 12.543 1.00 0.00 N ATOM 234 CA THR 66 16.913 7.709 12.373 1.00 0.00 C ATOM 235 C THR 66 16.161 8.898 11.744 1.00 0.00 C ATOM 236 O THR 66 15.378 8.707 10.816 1.00 0.00 O ATOM 237 N MET 67 16.437 10.131 12.198 1.00 0.00 N ATOM 238 CA MET 67 15.870 11.369 11.658 1.00 0.00 C ATOM 239 C MET 67 16.419 11.699 10.260 1.00 0.00 C ATOM 240 O MET 67 15.852 12.521 9.533 1.00 0.00 O ATOM 241 N VAL 68 17.541 11.070 9.899 1.00 0.00 N ATOM 242 CA VAL 68 18.169 11.025 8.576 1.00 0.00 C ATOM 243 C VAL 68 18.453 12.413 7.996 1.00 0.00 C ATOM 244 O VAL 68 18.509 12.595 6.781 1.00 0.00 O ATOM 245 N ASP 69 18.601 13.410 8.867 1.00 0.00 N ATOM 246 CA ASP 69 18.655 14.807 8.489 1.00 0.00 C ATOM 247 C ASP 69 19.120 15.662 9.666 1.00 0.00 C ATOM 248 O ASP 69 18.968 15.272 10.826 1.00 0.00 O ATOM 249 N ALA 70 19.594 16.882 9.382 1.00 0.00 N ATOM 250 CA ALA 70 19.887 17.920 10.364 1.00 0.00 C ATOM 251 C ALA 70 18.619 18.645 10.851 1.00 0.00 C ATOM 252 O ALA 70 18.667 19.821 11.220 1.00 0.00 O ATOM 253 N PHE 71 17.478 17.954 10.820 1.00 0.00 N ATOM 254 CA PHE 71 16.190 18.417 11.312 1.00 0.00 C ATOM 255 C PHE 71 16.229 18.643 12.831 1.00 0.00 C ATOM 256 O PHE 71 17.253 18.421 13.476 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 224 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 101.09 33.3 108 87.1 124 ARMSMC SECONDARY STRUCTURE . . 104.45 33.8 77 89.5 86 ARMSMC SURFACE . . . . . . . . 98.31 36.5 85 92.4 92 ARMSMC BURIED . . . . . . . . 110.75 21.7 23 71.9 32 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 53 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 34 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 31 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.76 (Number of atoms: 56) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.76 56 88.9 63 CRMSCA CRN = ALL/NP . . . . . 0.1921 CRMSCA SECONDARY STRUCTURE . . 8.90 39 90.7 43 CRMSCA SURFACE . . . . . . . . 10.71 44 93.6 47 CRMSCA BURIED . . . . . . . . 10.92 12 75.0 16 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.64 224 72.0 311 CRMSMC SECONDARY STRUCTURE . . 8.92 156 73.2 213 CRMSMC SURFACE . . . . . . . . 10.54 176 75.9 232 CRMSMC BURIED . . . . . . . . 10.98 48 60.8 79 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 258 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 228 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 179 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 191 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 67 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.64 224 43.9 510 CRMSALL SECONDARY STRUCTURE . . 8.92 156 44.4 351 CRMSALL SURFACE . . . . . . . . 10.54 176 46.4 379 CRMSALL BURIED . . . . . . . . 10.98 48 36.6 131 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.504 1.000 0.500 56 88.9 63 ERRCA SECONDARY STRUCTURE . . 7.879 1.000 0.500 39 90.7 43 ERRCA SURFACE . . . . . . . . 9.560 1.000 0.500 44 93.6 47 ERRCA BURIED . . . . . . . . 9.299 1.000 0.500 12 75.0 16 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.391 1.000 0.500 224 72.0 311 ERRMC SECONDARY STRUCTURE . . 7.848 1.000 0.500 156 73.2 213 ERRMC SURFACE . . . . . . . . 9.394 1.000 0.500 176 75.9 232 ERRMC BURIED . . . . . . . . 9.380 1.000 0.500 48 60.8 79 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 258 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 228 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 179 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 191 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 67 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.391 1.000 0.500 224 43.9 510 ERRALL SECONDARY STRUCTURE . . 7.848 1.000 0.500 156 44.4 351 ERRALL SURFACE . . . . . . . . 9.394 1.000 0.500 176 46.4 379 ERRALL BURIED . . . . . . . . 9.380 1.000 0.500 48 36.6 131 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 4 11 32 56 63 DISTCA CA (P) 0.00 1.59 6.35 17.46 50.79 63 DISTCA CA (RMS) 0.00 1.47 2.41 3.60 6.19 DISTCA ALL (N) 0 3 16 50 135 224 510 DISTALL ALL (P) 0.00 0.59 3.14 9.80 26.47 510 DISTALL ALL (RMS) 0.00 1.70 2.46 3.64 6.38 DISTALL END of the results output