####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 145), selected 21 , name T0550TS481_1_1-D2 # Molecule2: number of CA atoms 162 ( 1319), selected 21 , name T0550-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0550TS481_1_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 179 - 197 4.94 5.69 LCS_AVERAGE: 11.58 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 187 - 196 1.69 13.31 LCS_AVERAGE: 5.23 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 189 - 195 0.72 9.91 LCS_AVERAGE: 2.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 178 N 178 3 4 15 0 3 3 3 4 5 5 5 5 5 6 6 6 6 6 8 8 18 19 21 LCS_GDT N 179 N 179 3 4 19 3 3 3 3 4 5 5 5 6 7 8 15 17 18 19 19 20 20 20 21 LCS_GDT Y 180 Y 180 3 8 19 3 3 3 6 9 9 10 11 13 13 14 15 17 18 19 19 20 20 20 21 LCS_GDT S 181 S 181 3 8 19 3 3 4 6 9 9 10 11 13 13 15 16 17 18 19 19 20 20 20 21 LCS_GDT G 182 G 182 4 8 19 3 4 4 5 9 9 10 11 13 13 15 16 17 18 19 19 20 20 20 21 LCS_GDT S 183 S 183 4 8 19 3 4 4 6 9 9 10 11 12 14 15 16 16 18 19 19 20 20 20 21 LCS_GDT Y 184 Y 184 4 8 19 3 4 4 5 9 9 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT T 185 T 185 4 8 19 3 4 4 6 9 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT A 186 A 186 3 8 19 3 3 4 5 9 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT S 187 S 187 3 10 19 3 3 5 8 10 10 10 11 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT S 188 S 188 4 10 19 3 3 5 8 10 11 12 12 12 14 14 16 16 17 19 19 20 20 20 21 LCS_GDT M 189 M 189 7 10 19 4 7 7 8 10 11 12 12 12 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT K 190 K 190 7 10 19 4 7 7 8 10 11 12 12 12 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT V 191 V 191 7 10 19 4 7 7 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT Y 192 Y 192 7 10 19 4 7 7 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT T 193 T 193 7 10 19 4 7 7 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT Y 194 Y 194 7 10 19 4 7 7 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT I 195 I 195 7 10 19 4 7 7 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT N 196 N 196 5 10 19 3 5 6 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 LCS_GDT G 197 G 197 3 8 19 3 3 4 4 5 7 9 10 12 12 13 14 17 18 19 19 20 20 20 21 LCS_GDT K 198 K 198 3 6 18 3 3 4 5 5 7 9 10 12 12 13 14 15 15 16 19 20 20 20 21 LCS_AVERAGE LCS_A: 6.56 ( 2.88 5.23 11.58 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 7 8 10 11 12 12 13 14 15 16 17 18 19 19 20 20 20 21 GDT PERCENT_AT 2.47 4.32 4.32 4.94 6.17 6.79 7.41 7.41 8.02 8.64 9.26 9.88 10.49 11.11 11.73 11.73 12.35 12.35 12.35 12.96 GDT RMS_LOCAL 0.28 0.72 0.72 1.11 1.69 2.09 2.44 2.44 3.48 3.23 4.06 4.25 4.54 4.72 4.94 4.94 5.21 5.21 5.21 5.58 GDT RMS_ALL_AT 8.31 9.91 9.91 9.77 13.31 9.92 9.30 9.30 5.97 8.79 6.26 6.46 5.65 5.67 5.69 5.69 5.62 5.62 5.62 5.58 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 178 N 178 18.698 3 0.257 0.345 19.473 0.000 0.000 LGA N 179 N 179 18.380 3 0.696 0.641 18.966 0.000 0.000 LGA Y 180 Y 180 19.845 7 0.156 0.158 22.396 0.000 0.000 LGA S 181 S 181 16.886 1 0.665 0.606 17.510 0.000 0.000 LGA G 182 G 182 12.797 0 0.651 0.651 14.237 0.000 0.000 LGA S 183 S 183 7.366 1 0.153 0.191 8.896 16.429 13.810 LGA Y 184 Y 184 4.321 7 0.013 0.021 5.756 35.000 13.849 LGA T 185 T 185 2.889 2 0.583 0.595 4.932 50.833 35.238 LGA A 186 A 186 3.289 0 0.663 0.665 5.167 42.619 47.048 LGA S 187 S 187 6.090 1 0.615 0.550 8.532 24.286 16.667 LGA S 188 S 188 2.109 1 0.608 0.574 2.774 69.048 56.825 LGA M 189 M 189 1.561 3 0.186 0.254 2.467 77.262 46.726 LGA K 190 K 190 1.719 4 0.018 0.025 1.735 75.000 41.429 LGA V 191 V 191 1.741 2 0.051 0.061 2.533 68.929 48.639 LGA Y 192 Y 192 1.762 7 0.078 0.083 2.033 70.833 29.683 LGA T 193 T 193 1.809 2 0.036 0.075 1.814 75.000 53.265 LGA Y 194 Y 194 1.849 7 0.064 0.091 2.498 79.405 31.865 LGA I 195 I 195 1.295 3 0.089 0.122 2.521 73.214 45.714 LGA N 196 N 196 3.006 3 0.433 0.463 6.246 40.833 23.690 LGA G 197 G 197 7.713 0 0.189 0.189 10.116 9.048 9.048 LGA K 198 K 198 8.125 4 0.512 0.521 8.995 5.119 3.757 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 162 103 63.58 162 SUMMARY(RMSD_GDC): 5.576 5.474 5.720 5.018 3.193 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 162 4.0 12 2.44 7.099 6.834 0.473 LGA_LOCAL RMSD: 2.436 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.305 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 5.576 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.616234 * X + -0.568422 * Y + -0.545117 * Z + 68.142769 Y_new = -0.683605 * X + 0.729757 * Y + 0.011834 * Z + 17.593596 Z_new = 0.391076 * X + 0.379937 * Y + -0.838277 * Z + -3.970678 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.304411 -0.401800 2.716052 [DEG: -132.0330 -23.0215 155.6183 ] ZXZ: -1.592501 2.564911 0.799845 [DEG: -91.2436 146.9586 45.8277 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0550TS481_1_1-D2 REMARK 2: T0550-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0550TS481_1_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 162 4.0 12 2.44 6.834 5.58 REMARK ---------------------------------------------------------- MOLECULE T0550TS481_1_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0550 REMARK PARENT N/A ATOM 1225 N ASN 178 56.240 18.322 16.215 1.00 0.00 N ATOM 1226 CA ASN 178 56.294 17.199 17.143 1.00 0.00 C ATOM 1227 C ASN 178 57.568 17.233 17.977 1.00 0.00 C ATOM 1228 O ASN 178 58.674 17.275 17.436 1.00 0.00 O ATOM 1229 CB ASN 178 56.177 15.872 16.416 1.00 0.00 C ATOM 1230 CEN ASN 178 55.424 15.197 16.137 1.00 0.00 C ATOM 1231 H ASN 178 56.954 18.408 15.505 1.00 0.00 H ATOM 1232 N ASN 179 57.408 17.213 19.295 1.00 0.00 N ATOM 1233 CA ASN 179 58.545 17.262 20.206 1.00 0.00 C ATOM 1234 C ASN 179 59.421 16.024 20.062 1.00 0.00 C ATOM 1235 O ASN 179 59.010 15.027 19.467 1.00 0.00 O ATOM 1236 CB ASN 179 58.096 17.421 21.647 1.00 0.00 C ATOM 1237 CEN ASN 179 57.919 18.198 22.330 1.00 0.00 C ATOM 1238 H ASN 179 56.474 17.163 19.676 1.00 0.00 H ATOM 1239 N TYR 180 60.630 16.094 20.608 1.00 0.00 N ATOM 1240 CA TYR 180 61.567 14.979 20.539 1.00 0.00 C ATOM 1241 C TYR 180 60.991 13.733 21.200 1.00 0.00 C ATOM 1242 O TYR 180 61.410 12.613 20.907 1.00 0.00 O ATOM 1243 CB TYR 180 62.896 15.355 21.197 1.00 0.00 C ATOM 1244 CEN TYR 180 64.511 15.883 20.770 1.00 0.00 C ATOM 1245 H TYR 180 60.907 16.940 21.084 1.00 0.00 H ATOM 1246 N SER 181 60.028 13.934 22.093 1.00 0.00 N ATOM 1247 CA SER 181 59.390 12.827 22.794 1.00 0.00 C ATOM 1248 C SER 181 58.242 12.246 21.977 1.00 0.00 C ATOM 1249 O SER 181 57.609 11.273 22.385 1.00 0.00 O ATOM 1250 CB SER 181 58.893 13.286 24.151 1.00 0.00 C ATOM 1251 CEN SER 181 58.684 13.614 24.532 1.00 0.00 C ATOM 1252 H SER 181 59.731 14.879 22.290 1.00 0.00 H ATOM 1253 N GLY 182 57.979 12.851 20.824 1.00 0.00 N ATOM 1254 CA GLY 182 56.959 12.346 19.911 1.00 0.00 C ATOM 1255 C GLY 182 55.599 12.963 20.210 1.00 0.00 C ATOM 1256 O GLY 182 54.624 12.712 19.502 1.00 0.00 O ATOM 1257 CEN GLY 182 56.959 12.346 19.911 1.00 0.00 C ATOM 1258 H GLY 182 58.498 13.679 20.573 1.00 0.00 H ATOM 1259 N SER 183 55.539 13.770 21.263 1.00 0.00 N ATOM 1260 CA SER 183 54.294 14.410 21.668 1.00 0.00 C ATOM 1261 C SER 183 53.965 15.593 20.767 1.00 0.00 C ATOM 1262 O SER 183 54.860 16.296 20.297 1.00 0.00 O ATOM 1263 CB SER 183 54.383 14.857 23.115 1.00 0.00 C ATOM 1264 CEN SER 183 54.600 15.048 23.575 1.00 0.00 C ATOM 1265 H SER 183 56.379 13.944 21.798 1.00 0.00 H ATOM 1266 N TYR 184 52.676 15.808 20.529 1.00 0.00 N ATOM 1267 CA TYR 184 52.223 16.926 19.708 1.00 0.00 C ATOM 1268 C TYR 184 52.416 18.253 20.430 1.00 0.00 C ATOM 1269 O TYR 184 52.079 18.385 21.607 1.00 0.00 O ATOM 1270 CB TYR 184 50.753 16.746 19.323 1.00 0.00 C ATOM 1271 CEN TYR 184 49.767 16.213 17.976 1.00 0.00 C ATOM 1272 H TYR 184 51.990 15.181 20.926 1.00 0.00 H ATOM 1273 N THR 185 52.961 19.233 19.719 1.00 0.00 N ATOM 1274 CA THR 185 53.207 20.551 20.293 1.00 0.00 C ATOM 1275 C THR 185 52.205 21.575 19.774 1.00 0.00 C ATOM 1276 O THR 185 51.500 22.217 20.552 1.00 0.00 O ATOM 1277 CB THR 185 54.633 21.044 19.986 1.00 0.00 C ATOM 1278 CEN THR 185 55.214 20.986 20.015 1.00 0.00 C ATOM 1279 H THR 185 53.210 19.063 18.755 1.00 0.00 H ATOM 1280 N ALA 186 52.146 21.722 18.455 1.00 0.00 N ATOM 1281 CA ALA 186 51.269 22.705 17.832 1.00 0.00 C ATOM 1282 C ALA 186 51.226 22.526 16.320 1.00 0.00 C ATOM 1283 O ALA 186 51.837 21.605 15.777 1.00 0.00 O ATOM 1284 CB ALA 186 51.713 24.116 18.189 1.00 0.00 C ATOM 1285 CEN ALA 186 51.713 24.115 18.188 1.00 0.00 C ATOM 1286 H ALA 186 52.727 21.139 17.869 1.00 0.00 H ATOM 1287 N SER 187 50.501 23.412 15.644 1.00 0.00 N ATOM 1288 CA SER 187 50.392 23.362 14.191 1.00 0.00 C ATOM 1289 C SER 187 51.288 24.404 13.536 1.00 0.00 C ATOM 1290 O SER 187 51.107 25.605 13.732 1.00 0.00 O ATOM 1291 CB SER 187 48.949 23.566 13.770 1.00 0.00 C ATOM 1292 CEN SER 187 48.441 23.757 13.776 1.00 0.00 C ATOM 1293 H SER 187 50.015 24.137 16.151 1.00 0.00 H ATOM 1294 N SER 188 52.256 23.937 12.754 1.00 0.00 N ATOM 1295 CA SER 188 53.216 24.825 12.108 1.00 0.00 C ATOM 1296 C SER 188 52.541 25.687 11.049 1.00 0.00 C ATOM 1297 O SER 188 51.660 25.222 10.326 1.00 0.00 O ATOM 1298 CB SER 188 54.343 24.018 11.494 1.00 0.00 C ATOM 1299 CEN SER 188 54.595 23.606 11.244 1.00 0.00 C ATOM 1300 H SER 188 52.330 22.941 12.604 1.00 0.00 H ATOM 1301 N MET 189 52.960 26.945 10.962 1.00 0.00 N ATOM 1302 CA MET 189 52.372 27.885 10.016 1.00 0.00 C ATOM 1303 C MET 189 53.317 29.045 9.730 1.00 0.00 C ATOM 1304 O MET 189 54.290 29.258 10.455 1.00 0.00 O ATOM 1305 CB MET 189 51.041 28.409 10.552 1.00 0.00 C ATOM 1306 CEN MET 189 49.307 28.328 10.297 1.00 0.00 C ATOM 1307 H MET 189 53.706 27.258 11.567 1.00 0.00 H ATOM 1308 N LYS 190 53.027 29.791 8.671 1.00 0.00 N ATOM 1309 CA LYS 190 53.706 31.056 8.415 1.00 0.00 C ATOM 1310 C LYS 190 52.870 32.236 8.891 1.00 0.00 C ATOM 1311 O LYS 190 51.642 32.220 8.792 1.00 0.00 O ATOM 1312 CB LYS 190 54.023 31.203 6.926 1.00 0.00 C ATOM 1313 CEN LYS 190 55.447 31.138 5.363 1.00 0.00 C ATOM 1314 H LYS 190 52.319 29.474 8.025 1.00 0.00 H ATOM 1315 N VAL 191 53.540 33.259 9.410 1.00 0.00 N ATOM 1316 CA VAL 191 52.872 34.496 9.797 1.00 0.00 C ATOM 1317 C VAL 191 53.156 35.611 8.799 1.00 0.00 C ATOM 1318 O VAL 191 54.312 35.940 8.533 1.00 0.00 O ATOM 1319 CB VAL 191 53.304 34.955 11.202 1.00 0.00 C ATOM 1320 CEN VAL 191 53.091 35.022 11.854 1.00 0.00 C ATOM 1321 H VAL 191 54.539 33.178 9.538 1.00 0.00 H ATOM 1322 N TYR 192 52.094 36.190 8.249 1.00 0.00 N ATOM 1323 CA TYR 192 52.227 37.285 7.295 1.00 0.00 C ATOM 1324 C TYR 192 51.423 38.501 7.738 1.00 0.00 C ATOM 1325 O TYR 192 50.198 38.439 7.855 1.00 0.00 O ATOM 1326 CB TYR 192 51.779 36.838 5.902 1.00 0.00 C ATOM 1327 CEN TYR 192 52.454 36.300 4.377 1.00 0.00 C ATOM 1328 H TYR 192 51.171 35.864 8.497 1.00 0.00 H ATOM 1329 N THR 193 52.117 39.607 7.980 1.00 0.00 N ATOM 1330 CA THR 193 51.478 40.820 8.475 1.00 0.00 C ATOM 1331 C THR 193 51.636 41.969 7.488 1.00 0.00 C ATOM 1332 O THR 193 52.709 42.165 6.916 1.00 0.00 O ATOM 1333 CB THR 193 52.053 41.246 9.839 1.00 0.00 C ATOM 1334 CEN THR 193 52.167 41.145 10.404 1.00 0.00 C ATOM 1335 H THR 193 53.115 39.608 7.817 1.00 0.00 H ATOM 1336 N TYR 194 50.562 42.727 7.291 1.00 0.00 N ATOM 1337 CA TYR 194 50.588 43.872 6.390 1.00 0.00 C ATOM 1338 C TYR 194 51.115 45.115 7.094 1.00 0.00 C ATOM 1339 O TYR 194 50.776 45.378 8.248 1.00 0.00 O ATOM 1340 CB TYR 194 49.191 44.140 5.827 1.00 0.00 C ATOM 1341 CEN TYR 194 48.241 43.858 4.381 1.00 0.00 C ATOM 1342 H TYR 194 49.708 42.503 7.779 1.00 0.00 H ATOM 1343 N ILE 195 51.946 45.879 6.393 1.00 0.00 N ATOM 1344 CA ILE 195 52.496 47.115 6.937 1.00 0.00 C ATOM 1345 C ILE 195 51.784 48.334 6.364 1.00 0.00 C ATOM 1346 O ILE 195 51.452 48.371 5.180 1.00 0.00 O ATOM 1347 CB ILE 195 54.005 47.234 6.656 1.00 0.00 C ATOM 1348 CEN ILE 195 55.002 46.971 7.011 1.00 0.00 C ATOM 1349 H ILE 195 52.204 45.596 5.458 1.00 0.00 H ATOM 1350 N ASN 196 51.553 49.331 7.212 1.00 0.00 N ATOM 1351 CA ASN 196 50.841 50.535 6.802 1.00 0.00 C ATOM 1352 C ASN 196 51.701 51.400 5.890 1.00 0.00 C ATOM 1353 O ASN 196 52.897 51.567 6.123 1.00 0.00 O ATOM 1354 CB ASN 196 50.375 51.339 8.003 1.00 0.00 C ATOM 1355 CEN ASN 196 49.519 51.420 8.605 1.00 0.00 C ATOM 1356 H ASN 196 51.880 49.252 8.165 1.00 0.00 H ATOM 1357 N GLY 197 51.083 51.949 4.849 1.00 0.00 N ATOM 1358 CA GLY 197 51.758 52.894 3.968 1.00 0.00 C ATOM 1359 C GLY 197 52.205 52.221 2.677 1.00 0.00 C ATOM 1360 O GLY 197 52.164 52.825 1.605 1.00 0.00 O ATOM 1361 CEN GLY 197 51.759 52.894 3.968 1.00 0.00 C ATOM 1362 H GLY 197 50.120 51.705 4.664 1.00 0.00 H ATOM 1363 N LYS 198 52.631 50.967 2.786 1.00 0.00 N ATOM 1364 CA LYS 198 53.089 50.210 1.627 1.00 0.00 C ATOM 1365 C LYS 198 52.007 50.134 0.556 1.00 0.00 C ATOM 1366 O LYS 198 52.179 50.508 -0.355 1.00 0.00 O ATOM 1367 CB LYS 198 53.519 48.803 2.042 1.00 0.00 C ATOM 1368 CEN LYS 198 55.079 47.432 2.445 1.00 0.00 C ATOM 1369 H LYS 198 52.637 50.526 3.694 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 103 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.19 42.5 40 12.4 322 ARMSMC SECONDARY STRUCTURE . . 56.21 60.9 23 12.8 180 ARMSMC SURFACE . . . . . . . . 79.62 38.5 26 12.5 208 ARMSMC BURIED . . . . . . . . 69.39 50.0 14 12.3 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 147 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 139 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 85 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 95 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 113 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 95 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 64 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 41 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 16 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.58 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.58 21 13.0 162 CRMSCA CRN = ALL/NP . . . . . 0.2655 CRMSCA SECONDARY STRUCTURE . . 5.08 12 13.3 90 CRMSCA SURFACE . . . . . . . . 6.16 14 13.3 105 CRMSCA BURIED . . . . . . . . 4.17 7 12.3 57 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.72 103 12.9 800 CRMSMC SECONDARY STRUCTURE . . 5.31 59 13.2 447 CRMSMC SURFACE . . . . . . . . 6.13 68 13.2 517 CRMSMC BURIED . . . . . . . . 4.84 35 12.4 283 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 6.71 19 2.8 671 CRMSSC RELIABLE SIDE CHAINS . 6.71 19 3.1 605 CRMSSC SECONDARY STRUCTURE . . 6.45 11 2.7 403 CRMSSC SURFACE . . . . . . . . 7.43 12 3.0 406 CRMSSC BURIED . . . . . . . . 5.24 7 2.6 265 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 5.72 103 7.8 1319 CRMSALL SECONDARY STRUCTURE . . 5.31 59 7.7 763 CRMSALL SURFACE . . . . . . . . 6.13 68 8.2 826 CRMSALL BURIED . . . . . . . . 4.84 35 7.1 493 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.197 1.000 0.500 21 13.0 162 ERRCA SECONDARY STRUCTURE . . 4.722 1.000 0.500 12 13.3 90 ERRCA SURFACE . . . . . . . . 5.803 1.000 0.500 14 13.3 105 ERRCA BURIED . . . . . . . . 3.987 1.000 0.500 7 12.3 57 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.301 1.000 0.500 103 12.9 800 ERRMC SECONDARY STRUCTURE . . 4.891 1.000 0.500 59 13.2 447 ERRMC SURFACE . . . . . . . . 5.631 1.000 0.500 68 13.2 517 ERRMC BURIED . . . . . . . . 4.661 1.000 0.500 35 12.4 283 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.351 1.000 0.500 19 2.8 671 ERRSC RELIABLE SIDE CHAINS . 6.351 1.000 0.500 19 3.1 605 ERRSC SECONDARY STRUCTURE . . 6.191 1.000 0.500 11 2.7 403 ERRSC SURFACE . . . . . . . . 7.090 1.000 0.500 12 3.0 406 ERRSC BURIED . . . . . . . . 5.083 1.000 0.500 7 2.6 265 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.301 1.000 0.500 103 7.8 1319 ERRALL SECONDARY STRUCTURE . . 4.891 1.000 0.500 59 7.7 763 ERRALL SURFACE . . . . . . . . 5.631 1.000 0.500 68 8.2 826 ERRALL BURIED . . . . . . . . 4.661 1.000 0.500 35 7.1 493 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 2 11 20 21 162 DISTCA CA (P) 0.00 1.23 1.23 6.79 12.35 162 DISTCA CA (RMS) 0.00 1.80 1.80 3.80 5.25 DISTCA ALL (N) 1 6 13 47 99 103 1319 DISTALL ALL (P) 0.08 0.45 0.99 3.56 7.51 1319 DISTALL ALL (RMS) 0.74 1.62 2.11 3.60 5.45 DISTALL END of the results output