####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 171), selected 22 , name T0550TS192_1-D2 # Molecule2: number of CA atoms 162 ( 1319), selected 22 , name T0550-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0550TS192_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 178 - 198 4.50 5.52 LCS_AVERAGE: 12.79 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 185 - 196 1.95 12.72 LONGEST_CONTINUOUS_SEGMENT: 12 186 - 197 1.96 11.85 LCS_AVERAGE: 5.84 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 187 - 195 0.93 13.53 LCS_AVERAGE: 3.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 178 N 178 3 4 21 0 3 3 3 4 4 4 5 5 6 6 6 17 20 20 21 21 21 21 21 LCS_GDT N 179 N 179 3 4 21 0 3 3 3 8 12 14 14 14 15 16 18 19 20 20 21 21 21 21 21 LCS_GDT Y 180 Y 180 4 6 21 1 3 5 5 6 8 9 10 11 12 12 18 19 20 20 21 21 21 21 21 LCS_GDT S 181 S 181 4 6 21 3 3 5 5 6 8 9 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT G 182 G 182 5 8 21 3 5 5 9 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT S 183 S 183 5 8 21 3 5 5 9 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT Y 184 Y 184 5 8 21 3 5 6 9 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT T 185 T 185 5 12 21 3 5 6 9 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT A 186 A 186 5 12 21 3 5 5 9 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT S 187 S 187 9 12 21 4 7 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT S 188 S 188 9 12 21 3 7 9 10 10 11 12 12 13 13 16 17 19 20 20 21 21 21 21 21 LCS_GDT M 189 M 189 9 12 21 3 7 9 10 10 11 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT K 190 K 190 9 12 21 3 6 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT V 191 V 191 9 12 21 3 7 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT Y 192 Y 192 9 12 21 4 7 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT T 193 T 193 9 12 21 4 7 9 10 10 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT Y 194 Y 194 9 12 21 4 7 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT I 195 I 195 9 12 21 3 5 9 10 10 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT N 196 N 196 6 12 21 3 4 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT G 197 G 197 4 12 21 3 3 4 5 8 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 LCS_GDT K 198 K 198 4 4 21 3 3 4 4 4 4 4 5 6 8 8 13 14 14 14 21 21 21 21 21 LCS_GDT P 199 P 199 4 4 15 3 3 4 4 4 4 4 5 5 5 5 5 5 5 6 6 6 7 7 7 LCS_AVERAGE LCS_A: 7.50 ( 3.87 5.84 12.79 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 9 10 11 12 14 14 15 16 16 18 19 20 20 21 21 21 21 21 GDT PERCENT_AT 2.47 4.32 5.56 6.17 6.79 7.41 8.64 8.64 9.26 9.88 9.88 11.11 11.73 12.35 12.35 12.96 12.96 12.96 12.96 12.96 GDT RMS_LOCAL 0.19 0.62 0.93 1.15 1.65 1.88 2.25 2.24 2.45 2.72 2.72 3.53 3.77 4.05 4.05 4.50 4.50 4.50 4.50 4.50 GDT RMS_ALL_AT 13.37 14.10 13.53 13.67 6.45 6.50 6.61 6.30 6.33 6.20 6.20 5.72 5.75 5.67 5.67 5.52 5.52 5.52 5.52 5.52 # Checking swapping # possible swapping detected: Y 180 Y 180 # possible swapping detected: Y 184 Y 184 # possible swapping detected: Y 192 Y 192 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 178 N 178 10.218 0 0.033 1.081 11.209 4.405 3.036 LGA N 179 N 179 9.892 0 0.709 1.300 12.964 0.238 0.298 LGA Y 180 Y 180 10.590 0 0.291 0.466 21.658 0.952 0.317 LGA S 181 S 181 5.789 0 0.663 0.875 6.558 33.810 30.476 LGA G 182 G 182 1.563 0 0.210 0.210 3.609 57.738 57.738 LGA S 183 S 183 2.071 0 0.155 0.643 5.423 71.310 59.127 LGA Y 184 Y 184 1.852 0 0.090 0.938 10.284 75.119 36.468 LGA T 185 T 185 0.619 0 0.262 0.303 2.578 88.214 78.231 LGA A 186 A 186 2.761 0 0.454 0.431 4.958 54.643 51.143 LGA S 187 S 187 1.980 0 0.233 0.764 5.469 58.214 51.270 LGA S 188 S 188 6.987 0 0.120 0.110 10.489 15.714 10.714 LGA M 189 M 189 4.680 0 0.150 1.125 8.890 51.786 31.071 LGA K 190 K 190 2.080 0 0.067 0.795 9.340 57.381 38.836 LGA V 191 V 191 1.821 0 0.240 0.243 5.394 79.762 60.816 LGA Y 192 Y 192 1.509 0 0.043 1.025 8.312 81.548 40.952 LGA T 193 T 193 3.330 0 0.129 0.201 7.098 63.095 42.449 LGA Y 194 Y 194 1.468 0 0.034 1.143 11.789 61.667 30.000 LGA I 195 I 195 3.145 0 0.140 1.197 10.414 59.405 34.940 LGA N 196 N 196 0.983 0 0.472 1.202 4.538 67.024 65.536 LGA G 197 G 197 3.792 0 0.242 0.242 8.168 29.643 29.643 LGA K 198 K 198 10.540 2 0.206 0.520 12.706 1.786 0.794 LGA P 199 P 199 16.482 0 0.166 0.335 18.091 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 169 169 100.00 162 SUMMARY(RMSD_GDC): 5.460 5.415 6.047 6.256 4.653 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 162 4.0 14 2.24 8.025 7.681 0.597 LGA_LOCAL RMSD: 2.244 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.295 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 5.460 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.006631 * X + -0.582559 * Y + 0.812761 * Z + 39.496994 Y_new = -0.735964 * X + -0.547411 * Y + -0.398370 * Z + 38.272411 Z_new = 0.676989 * X + -0.600804 * Y + -0.425113 * Z + 16.194700 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.579806 -0.743663 -2.186587 [DEG: -90.5162 -42.6088 -125.2822 ] ZXZ: 1.115065 2.009883 2.296643 [DEG: 63.8885 115.1578 131.5880 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0550TS192_1-D2 REMARK 2: T0550-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0550TS192_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 162 4.0 14 2.24 7.681 5.46 REMARK ---------------------------------------------------------- MOLECULE T0550TS192_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0550 REMARK MODEL 1 REMARK PARENT 2dpk_A 3ead_A 3e9t_A ATOM 1113 N ASN 178 46.552 21.851 24.248 1.00319.08 N ATOM 1114 CA ASN 178 47.137 21.317 25.469 1.00319.08 C ATOM 1115 C ASN 178 46.444 20.052 25.853 1.00319.08 C ATOM 1116 O ASN 178 45.561 19.572 25.145 1.00319.08 O ATOM 1117 CB ASN 178 46.953 22.150 26.768 1.00319.08 C ATOM 1118 CG ASN 178 45.687 21.930 27.602 1.00319.08 C ATOM 1119 OD1 ASN 178 45.830 21.899 28.820 1.00319.08 O ATOM 1120 ND2 ASN 178 44.480 21.771 27.007 1.00319.08 N ATOM 1121 N ASN 179 46.917 19.479 26.988 1.00255.65 N ATOM 1122 CA ASN 179 46.305 18.426 27.751 1.00255.65 C ATOM 1123 C ASN 179 47.276 17.308 27.896 1.00255.65 C ATOM 1124 O ASN 179 48.318 17.271 27.243 1.00255.65 O ATOM 1125 CB ASN 179 44.978 17.870 27.189 1.00255.65 C ATOM 1126 CG ASN 179 44.164 17.280 28.336 1.00255.65 C ATOM 1127 OD1 ASN 179 43.145 16.627 28.123 1.00255.65 O ATOM 1128 ND2 ASN 179 44.608 17.538 29.594 1.00255.65 N ATOM 1129 N TYR 180 46.960 16.372 28.804 1.00 93.96 N ATOM 1130 CA TYR 180 47.814 15.240 28.893 1.00 93.96 C ATOM 1131 C TYR 180 47.699 14.612 27.552 1.00 93.96 C ATOM 1132 O TYR 180 48.684 14.226 26.941 1.00 93.96 O ATOM 1133 CB TYR 180 47.374 14.232 29.978 1.00 93.96 C ATOM 1134 CG TYR 180 47.637 14.822 31.333 1.00 93.96 C ATOM 1135 CD1 TYR 180 46.785 15.751 31.885 1.00 93.96 C ATOM 1136 CD2 TYR 180 48.737 14.427 32.064 1.00 93.96 C ATOM 1137 CE1 TYR 180 47.030 16.285 33.131 1.00 93.96 C ATOM 1138 CE2 TYR 180 48.989 14.955 33.309 1.00 93.96 C ATOM 1139 CZ TYR 180 48.136 15.890 33.846 1.00 93.96 C ATOM 1140 OH TYR 180 48.392 16.435 35.124 1.00 93.96 H ATOM 1141 N SER 181 46.477 14.493 27.033 1.00162.08 N ATOM 1142 CA SER 181 46.333 13.944 25.723 1.00162.08 C ATOM 1143 C SER 181 46.568 15.010 24.692 1.00162.08 C ATOM 1144 O SER 181 46.624 14.709 23.502 1.00162.08 O ATOM 1145 CB SER 181 44.939 13.353 25.470 1.00162.08 C ATOM 1146 OG SER 181 44.721 12.246 26.334 1.00162.08 O ATOM 1147 N GLY 182 46.725 16.287 25.101 1.00219.68 N ATOM 1148 CA GLY 182 46.718 17.312 24.095 1.00219.68 C ATOM 1149 C GLY 182 48.075 17.795 23.770 1.00219.68 C ATOM 1150 O GLY 182 48.960 17.871 24.622 1.00219.68 O ATOM 1151 N SER 183 48.240 18.211 22.500 1.00160.34 N ATOM 1152 CA SER 183 49.560 18.540 22.131 1.00160.34 C ATOM 1153 C SER 183 49.717 19.753 21.348 1.00160.34 C ATOM 1154 O SER 183 48.853 20.115 20.566 1.00160.34 O ATOM 1155 CB SER 183 50.209 17.491 21.281 1.00160.34 C ATOM 1156 OG SER 183 50.422 16.314 22.041 1.00160.34 O ATOM 1157 N TYR 184 50.871 20.410 21.547 1.00193.70 N ATOM 1158 CA TYR 184 51.128 21.455 20.634 1.00193.70 C ATOM 1159 C TYR 184 52.351 21.046 19.926 1.00193.70 C ATOM 1160 O TYR 184 53.419 20.949 20.526 1.00193.70 O ATOM 1161 CB TYR 184 51.386 22.838 21.226 1.00193.70 C ATOM 1162 CG TYR 184 51.252 23.771 20.070 1.00193.70 C ATOM 1163 CD1 TYR 184 52.258 23.886 19.143 1.00193.70 C ATOM 1164 CD2 TYR 184 50.121 24.546 19.921 1.00193.70 C ATOM 1165 CE1 TYR 184 52.120 24.741 18.078 1.00193.70 C ATOM 1166 CE2 TYR 184 49.986 25.400 18.857 1.00193.70 C ATOM 1167 CZ TYR 184 50.991 25.509 17.934 1.00193.70 C ATOM 1168 OH TYR 184 50.854 26.393 16.842 1.00193.70 H ATOM 1169 N THR 185 52.142 20.754 18.632 1.00146.45 N ATOM 1170 CA THR 185 53.037 20.412 17.575 1.00146.45 C ATOM 1171 C THR 185 53.577 21.672 16.988 1.00146.45 C ATOM 1172 O THR 185 53.178 22.158 15.938 1.00146.45 O ATOM 1173 CB THR 185 52.345 19.586 16.546 1.00146.45 C ATOM 1174 OG1 THR 185 52.091 18.321 17.119 1.00146.45 O ATOM 1175 CG2 THR 185 53.140 19.431 15.262 1.00146.45 C ATOM 1176 N ALA 186 54.631 22.161 17.636 1.00199.02 N ATOM 1177 CA ALA 186 55.272 23.344 17.230 1.00199.02 C ATOM 1178 C ALA 186 56.073 23.083 16.020 1.00199.02 C ATOM 1179 O ALA 186 57.105 22.430 16.127 1.00199.02 O ATOM 1180 CB ALA 186 56.293 23.849 18.260 1.00199.02 C ATOM 1181 N SER 187 55.691 23.578 14.823 1.00317.58 N ATOM 1182 CA SER 187 54.525 24.228 14.316 1.00317.58 C ATOM 1183 C SER 187 53.925 25.179 15.258 1.00317.58 C ATOM 1184 O SER 187 52.729 25.440 15.246 1.00317.58 O ATOM 1185 CB SER 187 53.563 23.382 13.515 1.00317.58 C ATOM 1186 OG SER 187 53.017 24.152 12.457 1.00317.58 O ATOM 1187 N SER 188 54.761 25.791 16.084 1.00184.33 N ATOM 1188 CA SER 188 54.114 26.608 17.025 1.00184.33 C ATOM 1189 C SER 188 53.921 27.892 16.402 1.00184.33 C ATOM 1190 O SER 188 53.254 28.771 16.925 1.00184.33 O ATOM 1191 CB SER 188 54.852 26.803 18.342 1.00184.33 C ATOM 1192 OG SER 188 54.511 25.736 19.213 1.00184.33 O ATOM 1193 N MET 189 54.501 28.109 15.238 1.00196.26 N ATOM 1194 CA MET 189 54.342 29.488 15.069 1.00196.26 C ATOM 1195 C MET 189 54.170 29.783 13.618 1.00196.26 C ATOM 1196 O MET 189 54.656 29.060 12.755 1.00196.26 O ATOM 1197 CB MET 189 55.571 30.113 15.667 1.00196.26 C ATOM 1198 CG MET 189 55.935 29.891 17.110 1.00196.26 C ATOM 1199 SD MET 189 57.742 30.020 17.367 1.00196.26 S ATOM 1200 CE MET 189 57.851 28.750 18.660 1.00196.26 C ATOM 1201 N LYS 190 53.408 30.854 13.333 1.00198.46 N ATOM 1202 CA LYS 190 53.152 31.367 12.020 1.00198.46 C ATOM 1203 C LYS 190 53.028 32.854 12.119 1.00198.46 C ATOM 1204 O LYS 190 52.191 33.366 12.854 1.00198.46 O ATOM 1205 CB LYS 190 51.784 30.911 11.481 1.00198.46 C ATOM 1206 CG LYS 190 51.435 31.422 10.077 1.00198.46 C ATOM 1207 CD LYS 190 50.060 30.943 9.599 1.00198.46 C ATOM 1208 CE LYS 190 49.694 31.367 8.180 1.00198.46 C ATOM 1209 NZ LYS 190 48.334 30.882 7.853 1.00198.46 N ATOM 1210 N VAL 191 53.891 33.618 11.446 1.00114.26 N ATOM 1211 CA VAL 191 53.746 35.043 11.533 1.00114.26 C ATOM 1212 C VAL 191 52.708 35.394 10.552 1.00114.26 C ATOM 1213 O VAL 191 52.429 34.617 9.643 1.00114.26 O ATOM 1214 CB VAL 191 54.978 35.806 11.159 1.00114.26 C ATOM 1215 CG1 VAL 191 54.752 37.274 10.846 1.00114.26 C ATOM 1216 CG2 VAL 191 56.021 35.608 12.208 1.00114.26 C ATOM 1217 N TYR 192 52.082 36.568 10.721 1.00197.85 N ATOM 1218 CA TYR 192 51.194 36.995 9.697 1.00197.85 C ATOM 1219 C TYR 192 51.619 38.314 9.166 1.00197.85 C ATOM 1220 O TYR 192 51.796 39.228 9.957 1.00197.85 O ATOM 1221 CB TYR 192 49.746 37.113 10.182 1.00197.85 C ATOM 1222 CG TYR 192 49.131 35.763 10.195 1.00197.85 C ATOM 1223 CD1 TYR 192 49.761 34.711 10.810 1.00197.85 C ATOM 1224 CD2 TYR 192 47.890 35.575 9.631 1.00197.85 C ATOM 1225 CE1 TYR 192 49.177 33.468 10.815 1.00197.85 C ATOM 1226 CE2 TYR 192 47.300 34.333 9.637 1.00197.85 C ATOM 1227 CZ TYR 192 47.949 33.276 10.228 1.00197.85 C ATOM 1228 OH TYR 192 47.354 31.998 10.241 1.00197.85 H ATOM 1229 N THR 193 51.729 38.423 7.817 1.00128.82 N ATOM 1230 CA THR 193 52.182 39.534 7.000 1.00128.82 C ATOM 1231 C THR 193 51.332 40.717 7.204 1.00128.82 C ATOM 1232 O THR 193 50.221 40.584 7.690 1.00128.82 O ATOM 1233 CB THR 193 52.242 39.179 5.535 1.00128.82 C ATOM 1234 OG1 THR 193 53.154 38.112 5.344 1.00128.82 O ATOM 1235 CG2 THR 193 52.631 40.378 4.655 1.00128.82 C ATOM 1236 N TYR 194 51.887 41.910 6.886 1.00247.21 N ATOM 1237 CA TYR 194 51.334 43.194 7.137 1.00247.21 C ATOM 1238 C TYR 194 51.456 44.011 5.925 1.00247.21 C ATOM 1239 O TYR 194 52.558 44.285 5.455 1.00247.21 O ATOM 1240 CB TYR 194 52.143 43.973 8.181 1.00247.21 C ATOM 1241 CG TYR 194 51.809 45.418 8.275 1.00247.21 C ATOM 1242 CD1 TYR 194 50.757 45.865 9.034 1.00247.21 C ATOM 1243 CD2 TYR 194 52.595 46.337 7.622 1.00247.21 C ATOM 1244 CE1 TYR 194 50.494 47.211 9.124 1.00247.21 C ATOM 1245 CE2 TYR 194 52.330 47.680 7.710 1.00247.21 C ATOM 1246 CZ TYR 194 51.279 48.124 8.468 1.00247.21 C ATOM 1247 OH TYR 194 51.007 49.505 8.565 1.00247.21 H ATOM 1248 N ILE 195 50.303 44.460 5.427 1.00146.44 N ATOM 1249 CA ILE 195 50.348 45.407 4.374 1.00146.44 C ATOM 1250 C ILE 195 50.149 46.691 5.095 1.00146.44 C ATOM 1251 O ILE 195 49.340 46.784 6.016 1.00146.44 O ATOM 1252 CB ILE 195 49.290 45.231 3.322 1.00146.44 C ATOM 1253 CG1 ILE 195 47.879 45.368 3.914 1.00146.44 C ATOM 1254 CG2 ILE 195 49.549 43.891 2.619 1.00146.44 C ATOM 1255 CD1 ILE 195 46.795 45.488 2.844 1.00146.44 C ATOM 1256 N ASN 196 50.928 47.704 4.694 1.00169.39 N ATOM 1257 CA ASN 196 51.025 48.958 5.380 1.00169.39 C ATOM 1258 C ASN 196 49.673 49.574 5.539 1.00169.39 C ATOM 1259 O ASN 196 49.298 49.946 6.647 1.00169.39 O ATOM 1260 CB ASN 196 51.886 49.950 4.573 1.00169.39 C ATOM 1261 CG ASN 196 52.425 51.053 5.468 1.00169.39 C ATOM 1262 OD1 ASN 196 51.846 51.404 6.494 1.00169.39 O ATOM 1263 ND2 ASN 196 53.589 51.625 5.055 1.00169.39 N ATOM 1264 N GLY 197 48.891 49.689 4.449 1.00215.38 N ATOM 1265 CA GLY 197 47.603 50.312 4.579 1.00215.38 C ATOM 1266 C GLY 197 47.841 51.737 4.979 1.00215.38 C ATOM 1267 O GLY 197 47.139 52.284 5.826 1.00215.38 O ATOM 1268 N LYS 198 48.858 52.374 4.367 1.00168.74 N ATOM 1269 CA LYS 198 49.247 53.705 4.736 1.00168.74 C ATOM 1270 C LYS 198 48.842 54.675 3.676 1.00168.74 C ATOM 1271 O LYS 198 49.520 54.794 2.655 1.00168.74 O ATOM 1272 CB LYS 198 50.776 53.810 4.830 1.00168.74 C ATOM 1273 CG LYS 198 51.346 55.187 5.162 1.00168.74 C ATOM 1274 CD LYS 198 52.855 55.120 5.403 1.00168.74 C ATOM 1275 CE LYS 198 53.567 56.473 5.426 1.00168.74 C ATOM 1276 NZ LYS 198 55.032 56.254 5.450 1.00168.74 N ATOM 1277 N PRO 199 47.748 55.357 3.873 1.00231.06 N ATOM 1278 CA PRO 199 47.393 56.428 2.980 1.00231.06 C ATOM 1279 C PRO 199 47.993 57.644 3.602 1.00231.06 C ATOM 1280 O PRO 199 48.377 57.559 4.767 1.00231.06 O ATOM 1281 CB PRO 199 45.865 56.469 2.938 1.00231.06 C ATOM 1282 CG PRO 199 45.435 55.733 4.218 1.00231.06 C ATOM 1283 CD PRO 199 46.574 54.729 4.460 1.00231.06 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 169 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 67.05 38.1 42 13.0 322 ARMSMC SECONDARY STRUCTURE . . 43.74 44.0 25 13.9 180 ARMSMC SURFACE . . . . . . . . 68.15 46.4 28 13.5 208 ARMSMC BURIED . . . . . . . . 64.80 21.4 14 12.3 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.36 31.6 19 12.9 147 ARMSSC1 RELIABLE SIDE CHAINS . 90.71 27.8 18 12.9 139 ARMSSC1 SECONDARY STRUCTURE . . 84.36 33.3 12 14.1 85 ARMSSC1 SURFACE . . . . . . . . 86.71 30.8 13 13.7 95 ARMSSC1 BURIED . . . . . . . . 91.82 33.3 6 11.5 52 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.04 50.0 12 10.6 113 ARMSSC2 RELIABLE SIDE CHAINS . 31.09 66.7 9 9.5 95 ARMSSC2 SECONDARY STRUCTURE . . 31.52 62.5 8 12.5 64 ARMSSC2 SURFACE . . . . . . . . 91.15 37.5 8 11.6 69 ARMSSC2 BURIED . . . . . . . . 27.01 75.0 4 9.1 44 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.91 50.0 2 4.9 41 ARMSSC3 RELIABLE SIDE CHAINS . 101.91 50.0 2 5.7 35 ARMSSC3 SECONDARY STRUCTURE . . 101.91 50.0 2 7.7 26 ARMSSC3 SURFACE . . . . . . . . 14.69 100.0 1 3.6 28 ARMSSC3 BURIED . . . . . . . . 143.38 0.0 1 7.7 13 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 15.56 100.0 1 6.2 16 ARMSSC4 RELIABLE SIDE CHAINS . 15.56 100.0 1 6.2 16 ARMSSC4 SECONDARY STRUCTURE . . 15.56 100.0 1 7.1 14 ARMSSC4 SURFACE . . . . . . . . 15.56 100.0 1 7.7 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.46 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.46 22 13.6 162 CRMSCA CRN = ALL/NP . . . . . 0.2482 CRMSCA SECONDARY STRUCTURE . . 5.71 13 14.4 90 CRMSCA SURFACE . . . . . . . . 5.92 15 14.3 105 CRMSCA BURIED . . . . . . . . 4.31 7 12.3 57 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.64 108 13.5 800 CRMSMC SECONDARY STRUCTURE . . 5.87 64 14.3 447 CRMSMC SURFACE . . . . . . . . 6.10 73 14.1 517 CRMSMC BURIED . . . . . . . . 4.54 35 12.4 283 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.18 81 12.1 671 CRMSSC RELIABLE SIDE CHAINS . 7.47 73 12.1 605 CRMSSC SECONDARY STRUCTURE . . 6.75 54 13.4 403 CRMSSC SURFACE . . . . . . . . 6.78 47 11.6 406 CRMSSC BURIED . . . . . . . . 7.71 34 12.8 265 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.33 169 12.8 1319 CRMSALL SECONDARY STRUCTURE . . 6.25 106 13.9 763 CRMSALL SURFACE . . . . . . . . 6.29 107 13.0 826 CRMSALL BURIED . . . . . . . . 6.39 62 12.6 493 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 189.373 0.952 0.953 22 13.6 162 ERRCA SECONDARY STRUCTURE . . 176.253 0.953 0.954 13 14.4 90 ERRCA SURFACE . . . . . . . . 199.051 0.952 0.953 15 14.3 105 ERRCA BURIED . . . . . . . . 168.633 0.951 0.953 7 12.3 57 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 188.784 0.950 0.952 108 13.5 800 ERRMC SECONDARY STRUCTURE . . 175.557 0.952 0.954 64 14.3 447 ERRMC SURFACE . . . . . . . . 198.596 0.951 0.953 73 14.1 517 ERRMC BURIED . . . . . . . . 168.320 0.947 0.949 35 12.4 283 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 184.060 0.926 0.930 81 12.1 671 ERRSC RELIABLE SIDE CHAINS . 181.082 0.922 0.926 73 12.1 605 ERRSC SECONDARY STRUCTURE . . 182.154 0.937 0.939 54 13.4 403 ERRSC SURFACE . . . . . . . . 196.004 0.940 0.942 47 11.6 406 ERRSC BURIED . . . . . . . . 167.551 0.907 0.913 34 12.8 265 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 186.846 0.940 0.943 169 12.8 1319 ERRALL SECONDARY STRUCTURE . . 179.311 0.945 0.947 106 13.9 763 ERRALL SURFACE . . . . . . . . 197.775 0.948 0.949 107 13.0 826 ERRALL BURIED . . . . . . . . 167.985 0.926 0.931 62 12.6 493 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 5 9 14 21 22 162 DISTCA CA (P) 0.00 3.09 5.56 8.64 12.96 162 DISTCA CA (RMS) 0.00 1.59 2.12 2.93 4.57 DISTCA ALL (N) 4 22 45 92 150 169 1319 DISTALL ALL (P) 0.30 1.67 3.41 6.97 11.37 1319 DISTALL ALL (RMS) 0.73 1.46 2.12 3.18 4.91 DISTALL END of the results output