####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 29 ( 224), selected 29 , name T0550TS165_1-D2 # Molecule2: number of CA atoms 162 ( 1319), selected 29 , name T0550-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0550TS165_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 185 - 196 4.80 16.54 LONGEST_CONTINUOUS_SEGMENT: 12 186 - 197 4.80 14.92 LCS_AVERAGE: 6.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 190 - 196 1.82 23.09 LONGEST_CONTINUOUS_SEGMENT: 7 200 - 206 1.95 19.76 LCS_AVERAGE: 3.51 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 202 - 206 0.97 29.14 LCS_AVERAGE: 1.81 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 29 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 178 N 178 0 3 8 0 0 3 3 3 3 3 4 4 4 6 6 7 8 8 10 10 10 11 11 LCS_GDT N 179 N 179 0 4 9 0 0 3 3 4 5 5 5 5 5 6 7 8 9 9 10 10 10 11 11 LCS_GDT Y 180 Y 180 3 4 9 0 3 3 4 4 5 5 5 5 5 6 7 8 9 9 10 10 10 11 11 LCS_GDT S 181 S 181 3 4 9 1 3 3 4 4 5 5 5 7 7 7 7 8 9 9 10 10 10 11 12 LCS_GDT G 182 G 182 3 4 9 1 3 3 4 4 5 6 6 7 7 7 7 8 9 9 10 13 15 15 16 LCS_GDT S 183 S 183 3 4 9 0 3 3 4 4 5 6 6 7 7 7 7 8 9 9 11 14 15 15 16 LCS_GDT Y 184 Y 184 0 4 10 0 2 3 4 4 5 6 6 7 7 7 7 8 10 13 13 14 15 15 16 LCS_GDT T 185 T 185 0 4 12 0 1 3 4 4 5 6 6 7 7 9 10 12 12 13 13 14 15 15 16 LCS_GDT A 186 A 186 0 4 12 1 1 3 4 4 5 6 6 7 7 9 10 12 12 13 13 14 15 15 16 LCS_GDT S 187 S 187 0 4 12 0 0 3 4 4 5 6 6 9 9 10 10 12 12 13 13 14 15 15 16 LCS_GDT S 188 S 188 0 6 12 0 0 4 5 6 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT M 189 M 189 3 6 12 0 3 5 5 6 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT K 190 K 190 3 7 12 1 3 5 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT V 191 V 191 3 7 12 1 3 5 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT Y 192 Y 192 3 7 12 1 3 5 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT T 193 T 193 4 7 12 1 3 5 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT Y 194 Y 194 4 7 12 0 3 4 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT I 195 I 195 4 7 12 0 3 4 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT N 196 N 196 4 7 12 0 3 4 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 LCS_GDT G 197 G 197 4 5 12 3 4 4 4 4 5 5 6 7 9 10 10 11 12 13 13 14 14 15 17 LCS_GDT K 198 K 198 4 5 11 3 4 4 4 6 7 7 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_GDT P 199 P 199 4 6 11 3 4 4 5 6 7 8 9 9 9 9 9 10 10 12 13 13 14 14 14 LCS_GDT D 200 D 200 4 7 11 3 4 4 5 5 7 8 9 9 9 9 9 10 10 12 13 13 14 14 14 LCS_GDT T 201 T 201 4 7 11 3 5 5 5 6 7 8 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_GDT N 202 N 202 5 7 11 3 5 5 5 6 7 8 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_GDT A 203 A 203 5 7 11 3 5 5 5 6 7 8 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_GDT R 204 R 204 5 7 11 3 5 5 5 6 7 8 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_GDT T 205 T 205 5 7 11 3 4 5 5 6 7 8 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_GDT T 206 T 206 5 7 11 3 5 5 5 6 7 8 9 9 9 9 9 10 11 12 13 13 14 15 17 LCS_AVERAGE LCS_A: 4.03 ( 1.81 3.51 6.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 5 7 8 9 9 9 9 10 10 12 12 13 13 14 15 15 17 GDT PERCENT_AT 1.85 3.09 3.09 3.09 4.32 4.94 5.56 5.56 5.56 5.56 6.17 6.17 7.41 7.41 8.02 8.02 8.64 9.26 9.26 10.49 GDT RMS_LOCAL 0.07 0.73 0.73 0.73 1.82 2.10 2.34 2.34 2.34 2.34 3.20 3.15 4.80 4.80 5.20 5.20 5.66 6.30 6.30 7.70 GDT RMS_ALL_AT 39.04 20.86 20.86 20.86 23.09 20.28 21.62 21.62 21.62 21.62 19.05 22.24 16.54 16.54 14.42 14.42 14.53 15.39 15.39 19.85 # Checking swapping # possible swapping detected: Y 194 Y 194 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 178 N 178 51.460 0 0.529 0.953 55.331 0.000 0.000 LGA N 179 N 179 44.215 0 0.665 0.595 46.711 0.000 0.000 LGA Y 180 Y 180 40.439 0 0.639 1.269 43.537 0.000 0.000 LGA S 181 S 181 39.195 0 0.180 0.839 41.588 0.000 0.000 LGA G 182 G 182 35.256 0 0.228 0.228 36.777 0.000 0.000 LGA S 183 S 183 29.941 0 0.288 0.776 31.607 0.000 0.000 LGA Y 184 Y 184 22.960 0 0.250 1.131 26.287 0.000 0.000 LGA T 185 T 185 16.618 0 0.281 0.359 18.562 0.000 0.000 LGA A 186 A 186 14.066 0 0.607 0.608 15.431 0.000 0.000 LGA S 187 S 187 8.663 0 0.635 0.805 10.303 5.833 10.317 LGA S 188 S 188 3.091 0 0.652 0.697 4.706 43.929 48.413 LGA M 189 M 189 2.895 0 0.391 1.381 8.551 61.071 36.964 LGA K 190 K 190 2.479 0 0.228 0.750 13.112 66.786 34.233 LGA V 191 V 191 0.554 0 0.223 1.247 3.628 73.690 62.653 LGA Y 192 Y 192 3.073 0 0.250 1.445 15.435 61.429 23.135 LGA T 193 T 193 0.832 0 0.215 0.993 4.375 73.690 62.857 LGA Y 194 Y 194 1.730 0 0.165 1.402 11.395 68.929 35.079 LGA I 195 I 195 2.204 0 0.222 0.892 5.444 61.071 47.917 LGA N 196 N 196 2.650 0 0.538 0.814 6.064 44.286 39.107 LGA G 197 G 197 9.064 0 0.698 0.698 10.963 3.690 3.690 LGA K 198 K 198 13.795 2 0.111 0.586 15.806 0.000 0.000 LGA P 199 P 199 19.605 0 0.039 0.231 21.885 0.000 0.000 LGA D 200 D 200 19.112 0 0.238 0.794 22.230 0.000 0.000 LGA T 201 T 201 17.295 0 0.644 1.391 19.862 0.000 0.000 LGA N 202 N 202 16.267 0 0.068 0.337 16.558 0.000 0.000 LGA A 203 A 203 15.869 0 0.139 0.149 16.391 0.000 0.000 LGA R 204 R 204 14.643 0 0.079 1.263 20.256 0.000 0.000 LGA T 205 T 205 15.279 0 0.166 1.063 18.323 0.000 0.000 LGA T 206 T 206 15.084 0 0.048 0.095 15.882 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 29 116 116 100.00 222 222 100.00 162 SUMMARY(RMSD_GDC): 12.818 12.887 14.113 3.484 2.496 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 29 162 4.0 9 2.34 4.938 4.712 0.368 LGA_LOCAL RMSD: 2.343 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 21.618 Number of assigned atoms: 29 Std_ASGN_ATOMS RMSD: 12.818 Standard rmsd on all 29 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.654048 * X + 0.539916 * Y + 0.529823 * Z + 32.236271 Y_new = 0.516313 * X + -0.193259 * Y + 0.834309 * Z + 25.226355 Z_new = 0.552850 * X + 0.819233 * Y + -0.152365 * Z + 23.782875 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.473341 -0.585780 1.754680 [DEG: 141.7120 -33.5627 100.5358 ] ZXZ: 2.575803 1.723757 0.593639 [DEG: 147.5826 98.7640 34.0130 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0550TS165_1-D2 REMARK 2: T0550-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0550TS165_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 29 162 4.0 9 2.34 4.712 12.82 REMARK ---------------------------------------------------------- MOLECULE T0550TS165_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0550 REMARK MODEL 1 REMARK PARENT 2qvm_A ATOM 1439 N ASN 178 59.239 -9.626 -16.992 1.00258.11 N ATOM 1440 CA ASN 178 58.703 -10.357 -15.850 1.00258.11 C ATOM 1441 CB ASN 178 59.232 -11.841 -15.928 1.00258.11 C ATOM 1442 CG ASN 178 59.092 -12.485 -17.339 1.00258.11 C ATOM 1443 OD1 ASN 178 59.788 -12.125 -18.299 1.00258.11 O ATOM 1444 ND2 ASN 178 58.190 -13.494 -17.480 1.00258.11 N ATOM 1445 C ASN 178 59.152 -9.868 -14.436 1.00258.11 C ATOM 1446 O ASN 178 59.832 -10.711 -13.853 1.00258.11 O ATOM 1447 N ASN 179 58.785 -8.649 -13.803 1.00291.97 N ATOM 1448 CA ASN 179 59.263 -8.190 -12.444 1.00291.97 C ATOM 1449 CB ASN 179 60.768 -7.857 -12.398 1.00291.97 C ATOM 1450 CG ASN 179 61.567 -9.173 -12.489 1.00291.97 C ATOM 1451 OD1 ASN 179 61.301 -10.154 -11.793 1.00291.97 O ATOM 1452 ND2 ASN 179 62.532 -9.242 -13.445 1.00291.97 N ATOM 1453 C ASN 179 58.420 -7.088 -11.636 1.00291.97 C ATOM 1454 O ASN 179 57.370 -6.667 -12.122 1.00291.97 O ATOM 1455 N TYR 180 58.834 -6.643 -10.344 1.00398.99 N ATOM 1456 CA TYR 180 58.028 -5.907 -9.272 1.00398.99 C ATOM 1457 CB TYR 180 57.341 -7.072 -8.514 1.00398.99 C ATOM 1458 CG TYR 180 58.059 -8.363 -8.893 1.00398.99 C ATOM 1459 CD1 TYR 180 59.271 -8.743 -8.351 1.00398.99 C ATOM 1460 CD2 TYR 180 57.511 -9.215 -9.837 1.00398.99 C ATOM 1461 CE1 TYR 180 59.903 -9.910 -8.732 1.00398.99 C ATOM 1462 CE2 TYR 180 58.134 -10.383 -10.225 1.00398.99 C ATOM 1463 CZ TYR 180 59.336 -10.741 -9.668 1.00398.99 C ATOM 1464 OH TYR 180 59.978 -11.932 -10.064 1.00398.99 H ATOM 1465 C TYR 180 58.698 -4.872 -8.182 1.00398.99 C ATOM 1466 O TYR 180 59.922 -4.980 -8.069 1.00398.99 O ATOM 1467 N SER 181 57.942 -3.854 -7.421 1.00337.49 N ATOM 1468 CA SER 181 58.324 -2.866 -6.250 1.00337.49 C ATOM 1469 CB SER 181 59.799 -2.483 -6.363 1.00337.49 C ATOM 1470 OG SER 181 60.588 -3.583 -5.926 1.00337.49 O ATOM 1471 C SER 181 57.453 -1.505 -5.799 1.00337.49 C ATOM 1472 O SER 181 56.559 -1.169 -6.578 1.00337.49 O ATOM 1473 N GLY 182 57.671 -0.697 -4.571 1.00204.40 N ATOM 1474 CA GLY 182 56.989 0.619 -3.991 1.00204.40 C ATOM 1475 C GLY 182 57.330 1.369 -2.524 1.00204.40 C ATOM 1476 O GLY 182 58.103 0.752 -1.791 1.00204.40 O ATOM 1477 N SER 183 56.795 2.676 -2.047 1.00311.63 N ATOM 1478 CA SER 183 57.032 3.502 -0.707 1.00311.63 C ATOM 1479 CB SER 183 58.501 3.929 -0.571 1.00311.63 C ATOM 1480 OG SER 183 59.306 2.768 -0.508 1.00311.63 O ATOM 1481 C SER 183 56.111 4.831 -0.198 1.00311.63 C ATOM 1482 O SER 183 55.195 5.128 -0.960 1.00311.63 O ATOM 1483 N TYR 184 56.282 5.644 1.060 1.00402.93 N ATOM 1484 CA TYR 184 55.451 6.829 1.785 1.00402.93 C ATOM 1485 CB TYR 184 54.150 6.169 2.266 1.00402.93 C ATOM 1486 CG TYR 184 54.508 4.733 2.511 1.00402.93 C ATOM 1487 CD1 TYR 184 55.376 4.362 3.512 1.00402.93 C ATOM 1488 CD2 TYR 184 53.962 3.734 1.727 1.00402.93 C ATOM 1489 CE1 TYR 184 55.696 3.039 3.697 1.00402.93 C ATOM 1490 CE2 TYR 184 54.266 2.406 1.904 1.00402.93 C ATOM 1491 CZ TYR 184 55.152 2.063 2.896 1.00402.93 C ATOM 1492 OH TYR 184 55.495 0.706 3.113 1.00402.93 H ATOM 1493 C TYR 184 55.991 7.930 3.029 1.00402.93 C ATOM 1494 O TYR 184 57.129 7.670 3.420 1.00402.93 O ATOM 1495 N THR 185 55.291 9.158 3.637 1.00456.58 N ATOM 1496 CA THR 185 55.517 10.234 4.854 1.00456.58 C ATOM 1497 CB THR 185 56.999 10.348 5.185 1.00456.58 C ATOM 1498 OG1 THR 185 57.513 9.071 5.513 1.00456.58 O ATOM 1499 CG2 THR 185 57.278 11.217 6.419 1.00456.58 C ATOM 1500 C THR 185 54.847 11.770 4.839 1.00456.58 C ATOM 1501 O THR 185 54.030 12.035 3.963 1.00456.58 O ATOM 1502 N ALA 186 55.104 12.839 5.795 1.00334.98 N ATOM 1503 CA ALA 186 54.559 14.304 5.864 1.00334.98 C ATOM 1504 CB ALA 186 53.031 14.309 5.846 1.00334.98 C ATOM 1505 C ALA 186 54.964 15.368 7.061 1.00334.98 C ATOM 1506 O ALA 186 55.633 14.926 7.989 1.00334.98 O ATOM 1507 N SER 187 54.614 16.780 7.090 1.00305.27 N ATOM 1508 CA SER 187 54.900 17.830 8.207 1.00305.27 C ATOM 1509 CB SER 187 56.403 18.043 8.434 1.00305.27 C ATOM 1510 OG SER 187 56.593 18.907 9.546 1.00305.27 O ATOM 1511 C SER 187 54.275 19.352 8.153 1.00305.27 C ATOM 1512 O SER 187 53.594 19.620 7.169 1.00305.27 O ATOM 1513 N SER 188 54.432 20.377 9.166 1.00286.58 N ATOM 1514 CA SER 188 53.851 21.813 9.111 1.00286.58 C ATOM 1515 CB SER 188 52.310 21.812 9.250 1.00286.58 C ATOM 1516 OG SER 188 51.788 23.119 9.057 1.00286.58 O ATOM 1517 C SER 188 54.368 23.022 10.096 1.00286.58 C ATOM 1518 O SER 188 55.264 22.744 10.893 1.00286.58 O ATOM 1519 N MET 189 53.851 24.388 10.101 1.00391.90 N ATOM 1520 CA MET 189 54.250 25.589 11.042 1.00391.90 C ATOM 1521 CB MET 189 55.714 26.099 10.972 1.00391.90 C ATOM 1522 CG MET 189 56.626 25.273 11.901 1.00391.90 C ATOM 1523 SD MET 189 56.213 25.230 13.691 1.00391.90 S ATOM 1524 CE MET 189 57.684 24.347 14.343 1.00391.90 C ATOM 1525 C MET 189 53.309 26.889 11.507 1.00391.90 C ATOM 1526 O MET 189 52.137 26.664 11.807 1.00391.90 O ATOM 1527 N LYS 190 53.775 28.264 11.639 1.00324.58 N ATOM 1528 CA LYS 190 53.107 29.558 12.204 1.00324.58 C ATOM 1529 CB LYS 190 53.661 29.902 13.611 1.00324.58 C ATOM 1530 CG LYS 190 52.832 30.815 14.526 1.00324.58 C ATOM 1531 CD LYS 190 53.234 30.652 16.005 1.00324.58 C ATOM 1532 CE LYS 190 52.069 30.625 17.000 1.00324.58 C ATOM 1533 NZ LYS 190 51.352 31.927 16.886 1.00324.58 N ATOM 1534 C LYS 190 52.983 30.953 11.348 1.00324.58 C ATOM 1535 O LYS 190 53.227 30.887 10.138 1.00324.58 O ATOM 1536 N VAL 191 52.599 32.234 11.953 1.00247.56 N ATOM 1537 CA VAL 191 52.139 33.584 11.328 1.00247.56 C ATOM 1538 CB VAL 191 50.716 33.318 10.886 1.00247.56 C ATOM 1539 CG1 VAL 191 49.980 32.588 12.032 1.00247.56 C ATOM 1540 CG2 VAL 191 49.957 34.612 10.550 1.00247.56 C ATOM 1541 C VAL 191 51.983 35.044 12.106 1.00247.56 C ATOM 1542 O VAL 191 51.929 35.059 13.343 1.00247.56 O ATOM 1543 N TYR 192 51.949 36.310 11.383 1.00380.28 N ATOM 1544 CA TYR 192 51.319 37.665 11.788 1.00380.28 C ATOM 1545 CB TYR 192 51.205 37.804 13.333 1.00380.28 C ATOM 1546 CG TYR 192 50.525 39.068 13.794 1.00380.28 C ATOM 1547 CD1 TYR 192 49.158 39.210 13.703 1.00380.28 C ATOM 1548 CD2 TYR 192 51.239 40.117 14.333 1.00380.28 C ATOM 1549 CE1 TYR 192 48.511 40.348 14.135 1.00380.28 C ATOM 1550 CE2 TYR 192 50.595 41.257 14.768 1.00380.28 C ATOM 1551 CZ TYR 192 49.229 41.383 14.679 1.00380.28 C ATOM 1552 OH TYR 192 48.567 42.548 15.138 1.00380.28 H ATOM 1553 C TYR 192 51.843 39.097 11.276 1.00380.28 C ATOM 1554 O TYR 192 52.824 39.558 11.852 1.00380.28 O ATOM 1555 N THR 193 51.157 39.934 10.345 1.00353.77 N ATOM 1556 CA THR 193 51.681 41.260 9.814 1.00353.77 C ATOM 1557 CB THR 193 52.720 41.095 8.748 1.00353.77 C ATOM 1558 OG1 THR 193 53.492 42.281 8.590 1.00353.77 O ATOM 1559 CG2 THR 193 51.993 40.787 7.426 1.00353.77 C ATOM 1560 C THR 193 50.678 42.341 9.190 1.00353.77 C ATOM 1561 O THR 193 49.464 42.147 9.226 1.00353.77 O ATOM 1562 N TYR 194 51.171 43.568 8.674 1.00354.47 N ATOM 1563 CA TYR 194 50.486 44.744 8.014 1.00354.47 C ATOM 1564 CB TYR 194 49.878 45.734 9.055 1.00354.47 C ATOM 1565 CG TYR 194 49.413 47.023 8.425 1.00354.47 C ATOM 1566 CD1 TYR 194 48.167 47.140 7.840 1.00354.47 C ATOM 1567 CD2 TYR 194 50.240 48.134 8.402 1.00354.47 C ATOM 1568 CE1 TYR 194 47.759 48.326 7.264 1.00354.47 C ATOM 1569 CE2 TYR 194 49.838 49.321 7.829 1.00354.47 C ATOM 1570 CZ TYR 194 48.591 49.421 7.257 1.00354.47 C ATOM 1571 OH TYR 194 48.168 50.633 6.663 1.00354.47 H ATOM 1572 C TYR 194 51.429 45.595 7.076 1.00354.47 C ATOM 1573 O TYR 194 52.644 45.443 7.173 1.00354.47 O ATOM 1574 N ILE 195 50.929 46.497 6.125 1.00172.27 N ATOM 1575 CA ILE 195 51.790 47.377 5.274 1.00172.27 C ATOM 1576 CB ILE 195 52.425 46.678 4.104 1.00172.27 C ATOM 1577 CG2 ILE 195 51.427 46.820 2.946 1.00172.27 C ATOM 1578 CG1 ILE 195 53.771 47.333 3.712 1.00172.27 C ATOM 1579 CD1 ILE 195 54.602 46.496 2.736 1.00172.27 C ATOM 1580 C ILE 195 51.027 48.571 4.616 1.00172.27 C ATOM 1581 O ILE 195 49.818 48.690 4.798 1.00172.27 O ATOM 1582 N ASN 196 51.726 49.489 3.839 1.00270.21 N ATOM 1583 CA ASN 196 51.173 50.635 3.080 1.00270.21 C ATOM 1584 CB ASN 196 50.874 51.869 3.963 1.00270.21 C ATOM 1585 CG ASN 196 50.100 52.927 3.172 1.00270.21 C ATOM 1586 OD1 ASN 196 50.284 54.126 3.376 1.00270.21 O ATOM 1587 ND2 ASN 196 49.228 52.486 2.225 1.00270.21 N ATOM 1588 C ASN 196 52.139 51.116 1.977 1.00270.21 C ATOM 1589 O ASN 196 53.268 50.636 1.915 1.00270.21 O ATOM 1590 N GLY 197 51.721 52.057 1.059 1.00160.35 N ATOM 1591 CA GLY 197 52.603 52.611 0.038 1.00160.35 C ATOM 1592 C GLY 197 51.935 53.702 -0.808 1.00160.35 C ATOM 1593 O GLY 197 50.717 53.878 -0.764 1.00160.35 O ATOM 1594 N LYS 198 52.746 54.453 -1.624 1.00283.51 N ATOM 1595 CA LYS 198 52.314 55.516 -2.530 1.00283.51 C ATOM 1596 CB LYS 198 52.246 56.940 -1.904 1.00283.51 C ATOM 1597 CG LYS 198 51.768 58.028 -2.888 1.00283.51 C ATOM 1598 CD LYS 198 51.612 59.456 -2.353 1.00283.51 C ATOM 1599 CE LYS 198 51.359 60.475 -3.474 1.00283.51 C ATOM 1600 NZ LYS 198 51.184 61.835 -2.918 1.00283.51 N ATOM 1601 C LYS 198 53.379 55.645 -3.594 1.00283.51 C ATOM 1602 O LYS 198 54.436 55.027 -3.472 1.00283.51 O ATOM 1603 N PRO 199 53.174 56.405 -4.653 1.00148.90 N ATOM 1604 CA PRO 199 54.282 56.614 -5.536 1.00148.90 C ATOM 1605 CD PRO 199 51.931 56.402 -5.413 1.00148.90 C ATOM 1606 CB PRO 199 53.719 57.297 -6.790 1.00148.90 C ATOM 1607 CG PRO 199 52.206 57.447 -6.507 1.00148.90 C ATOM 1608 C PRO 199 55.389 57.325 -4.813 1.00148.90 C ATOM 1609 O PRO 199 55.164 58.374 -4.209 1.00148.90 O ATOM 1610 N ASP 200 56.594 56.738 -4.917 1.00281.58 N ATOM 1611 CA ASP 200 57.812 57.099 -4.254 1.00281.58 C ATOM 1612 CB ASP 200 57.743 58.295 -3.285 1.00281.58 C ATOM 1613 CG ASP 200 57.782 59.572 -4.132 1.00281.58 C ATOM 1614 OD1 ASP 200 57.869 59.458 -5.386 1.00281.58 O ATOM 1615 OD2 ASP 200 57.744 60.682 -3.541 1.00281.58 O ATOM 1616 C ASP 200 58.153 55.838 -3.534 1.00281.58 C ATOM 1617 O ASP 200 58.144 54.780 -4.158 1.00281.58 O ATOM 1618 N THR 201 58.472 55.862 -2.221 1.00353.88 N ATOM 1619 CA THR 201 58.758 54.564 -1.656 1.00353.88 C ATOM 1620 CB THR 201 60.195 54.202 -1.774 1.00353.88 C ATOM 1621 OG1 THR 201 60.393 52.882 -1.294 1.00353.88 O ATOM 1622 CG2 THR 201 61.003 55.213 -0.936 1.00353.88 C ATOM 1623 C THR 201 58.467 54.498 -0.185 1.00353.88 C ATOM 1624 O THR 201 58.332 55.540 0.450 1.00353.88 O ATOM 1625 N ASN 202 58.322 53.247 0.356 1.00345.11 N ATOM 1626 CA ASN 202 58.226 52.901 1.765 1.00345.11 C ATOM 1627 CB ASN 202 58.019 54.068 2.735 1.00345.11 C ATOM 1628 CG ASN 202 59.384 54.727 2.825 1.00345.11 C ATOM 1629 OD1 ASN 202 60.397 54.060 2.617 1.00345.11 O ATOM 1630 ND2 ASN 202 59.419 56.062 3.078 1.00345.11 N ATOM 1631 C ASN 202 57.174 51.853 2.051 1.00345.11 C ATOM 1632 O ASN 202 56.214 51.689 1.299 1.00345.11 O ATOM 1633 N ALA 203 57.364 51.102 3.175 1.00353.21 N ATOM 1634 CA ALA 203 56.498 50.042 3.670 1.00353.21 C ATOM 1635 CB ALA 203 56.224 48.951 2.629 1.00353.21 C ATOM 1636 C ALA 203 57.258 49.377 4.785 1.00353.21 C ATOM 1637 O ALA 203 58.401 49.781 4.962 1.00353.21 O ATOM 1638 N ARG 204 56.637 48.454 5.603 1.00434.26 N ATOM 1639 CA ARG 204 57.270 47.591 6.612 1.00434.26 C ATOM 1640 CB ARG 204 58.542 48.196 7.263 1.00434.26 C ATOM 1641 CG ARG 204 59.848 48.086 6.457 1.00434.26 C ATOM 1642 CD ARG 204 60.819 49.228 6.782 1.00434.26 C ATOM 1643 NE ARG 204 61.624 49.549 5.564 1.00434.26 N ATOM 1644 CZ ARG 204 61.694 50.848 5.136 1.00434.26 C ATOM 1645 NH1 ARG 204 61.010 51.830 5.797 1.00434.26 H ATOM 1646 NH2 ARG 204 62.448 51.168 4.042 1.00434.26 H ATOM 1647 C ARG 204 56.314 47.218 7.768 1.00434.26 C ATOM 1648 O ARG 204 55.531 48.060 8.199 1.00434.26 O ATOM 1649 N THR 205 56.349 45.933 8.272 1.00482.13 N ATOM 1650 CA THR 205 55.683 45.267 9.410 1.00482.13 C ATOM 1651 CB THR 205 54.182 45.350 9.421 1.00482.13 C ATOM 1652 OG1 THR 205 53.739 46.705 9.478 1.00482.13 O ATOM 1653 CG2 THR 205 53.662 44.562 10.629 1.00482.13 C ATOM 1654 C THR 205 56.060 43.867 9.076 1.00482.13 C ATOM 1655 O THR 205 56.683 43.673 8.042 1.00482.13 O ATOM 1656 N THR 206 55.774 42.829 9.862 1.00361.77 N ATOM 1657 CA THR 206 56.261 41.620 9.241 1.00361.77 C ATOM 1658 CB THR 206 57.716 41.343 9.535 1.00361.77 C ATOM 1659 OG1 THR 206 58.177 40.289 8.696 1.00361.77 O ATOM 1660 CG2 THR 206 57.833 40.908 11.014 1.00361.77 C ATOM 1661 C THR 206 55.468 40.439 9.685 1.00361.77 C ATOM 1662 O THR 206 54.863 40.530 10.748 1.00361.77 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 222 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 90.97 23.2 56 17.4 322 ARMSMC SECONDARY STRUCTURE . . 75.14 25.0 36 20.0 180 ARMSMC SURFACE . . . . . . . . 94.25 26.2 42 20.2 208 ARMSMC BURIED . . . . . . . . 80.30 14.3 14 12.3 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.34 24.0 25 17.0 147 ARMSSC1 RELIABLE SIDE CHAINS . 93.54 25.0 24 17.3 139 ARMSSC1 SECONDARY STRUCTURE . . 92.47 25.0 16 18.8 85 ARMSSC1 SURFACE . . . . . . . . 90.26 31.6 19 20.0 95 ARMSSC1 BURIED . . . . . . . . 109.88 0.0 6 11.5 52 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 45.15 53.3 15 13.3 113 ARMSSC2 RELIABLE SIDE CHAINS . 43.94 63.6 11 11.6 95 ARMSSC2 SECONDARY STRUCTURE . . 44.57 54.5 11 17.2 64 ARMSSC2 SURFACE . . . . . . . . 38.68 45.5 11 15.9 69 ARMSSC2 BURIED . . . . . . . . 59.41 75.0 4 9.1 44 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 124.17 0.0 3 7.3 41 ARMSSC3 RELIABLE SIDE CHAINS . 124.17 0.0 3 8.6 35 ARMSSC3 SECONDARY STRUCTURE . . 124.17 0.0 3 11.5 26 ARMSSC3 SURFACE . . . . . . . . 128.03 0.0 2 7.1 28 ARMSSC3 BURIED . . . . . . . . 116.06 0.0 1 7.7 13 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.98 0.0 2 12.5 16 ARMSSC4 RELIABLE SIDE CHAINS . 83.98 0.0 2 12.5 16 ARMSSC4 SECONDARY STRUCTURE . . 83.98 0.0 2 14.3 14 ARMSSC4 SURFACE . . . . . . . . 83.98 0.0 2 15.4 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.82 (Number of atoms: 29) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.82 29 17.9 162 CRMSCA CRN = ALL/NP . . . . . 0.4420 CRMSCA SECONDARY STRUCTURE . . 11.85 18 20.0 90 CRMSCA SURFACE . . . . . . . . 12.96 22 21.0 105 CRMSCA BURIED . . . . . . . . 12.37 7 12.3 57 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.03 143 17.9 800 CRMSMC SECONDARY STRUCTURE . . 12.03 89 19.9 447 CRMSMC SURFACE . . . . . . . . 13.22 108 20.9 517 CRMSMC BURIED . . . . . . . . 12.43 35 12.4 283 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 15.42 106 15.8 671 CRMSSC RELIABLE SIDE CHAINS . 15.29 96 15.9 605 CRMSSC SECONDARY STRUCTURE . . 14.20 73 18.1 403 CRMSSC SURFACE . . . . . . . . 15.19 72 17.7 406 CRMSSC BURIED . . . . . . . . 15.89 34 12.8 265 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.15 222 16.8 1319 CRMSALL SECONDARY STRUCTURE . . 13.12 145 19.0 763 CRMSALL SURFACE . . . . . . . . 14.07 160 19.4 826 CRMSALL BURIED . . . . . . . . 14.37 62 12.6 493 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 308.204 0.923 0.927 29 17.9 162 ERRCA SECONDARY STRUCTURE . . 310.864 0.926 0.929 18 20.0 90 ERRCA SURFACE . . . . . . . . 297.809 0.919 0.923 22 21.0 105 ERRCA BURIED . . . . . . . . 340.874 0.935 0.938 7 12.3 57 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 309.952 0.923 0.926 143 17.9 800 ERRMC SECONDARY STRUCTURE . . 312.073 0.926 0.929 89 19.9 447 ERRMC SURFACE . . . . . . . . 299.945 0.919 0.922 108 20.9 517 ERRMC BURIED . . . . . . . . 340.832 0.935 0.937 35 12.4 283 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 327.403 0.917 0.921 106 15.8 671 ERRSC RELIABLE SIDE CHAINS . 333.589 0.918 0.922 96 15.9 605 ERRSC SECONDARY STRUCTURE . . 329.439 0.922 0.925 73 18.1 403 ERRSC SURFACE . . . . . . . . 314.615 0.915 0.919 72 17.7 406 ERRSC BURIED . . . . . . . . 354.482 0.921 0.924 34 12.8 265 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 317.331 0.920 0.924 222 16.8 1319 ERRALL SECONDARY STRUCTURE . . 320.187 0.924 0.927 145 19.0 763 ERRALL SURFACE . . . . . . . . 305.297 0.917 0.921 160 19.4 826 ERRALL BURIED . . . . . . . . 348.387 0.928 0.931 62 12.6 493 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 13 29 162 DISTCA CA (P) 0.00 0.00 0.00 1.23 8.02 162 DISTCA CA (RMS) 0.00 0.00 0.00 4.20 8.40 DISTCA ALL (N) 0 1 3 14 69 222 1319 DISTALL ALL (P) 0.00 0.08 0.23 1.06 5.23 1319 DISTALL ALL (RMS) 0.00 1.34 1.99 3.92 7.85 DISTALL END of the results output