####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 319), selected 21 , name T0550TS055_1_1-D2 # Molecule2: number of CA atoms 162 ( 1319), selected 21 , name T0550-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0550TS055_1_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 178 - 195 4.98 5.80 LCS_AVERAGE: 10.93 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 179 - 188 1.74 16.21 LONGEST_CONTINUOUS_SEGMENT: 10 187 - 196 1.70 13.02 LONGEST_CONTINUOUS_SEGMENT: 10 188 - 197 1.94 14.31 LCS_AVERAGE: 5.91 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 180 - 187 0.89 15.56 LCS_AVERAGE: 4.20 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 178 N 178 4 5 18 3 3 4 6 7 9 9 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT N 179 N 179 4 10 18 3 3 4 6 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT Y 180 Y 180 8 10 18 5 6 8 8 9 10 10 10 11 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT S 181 S 181 8 10 18 5 6 8 8 9 10 10 10 11 12 13 14 16 17 19 19 20 21 21 21 LCS_GDT G 182 G 182 8 10 18 5 6 8 8 9 10 10 10 11 12 13 13 15 16 19 19 20 21 21 21 LCS_GDT S 183 S 183 8 10 18 5 6 8 8 9 10 10 10 11 12 13 13 16 17 19 19 20 21 21 21 LCS_GDT Y 184 Y 184 8 10 18 5 6 8 8 9 10 10 10 11 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT T 185 T 185 8 10 18 4 6 8 8 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT A 186 A 186 8 10 18 0 6 8 8 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT S 187 S 187 8 10 18 0 4 8 8 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT S 188 S 188 7 10 18 4 6 8 9 9 10 10 11 12 13 14 14 16 16 19 19 20 21 21 21 LCS_GDT M 189 M 189 7 10 18 4 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT K 190 K 190 7 10 18 4 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT V 191 V 191 7 10 18 4 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT Y 192 Y 192 7 10 18 4 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT T 193 T 193 7 10 18 4 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT Y 194 Y 194 7 10 18 3 6 8 9 9 10 10 11 13 13 15 15 16 17 19 19 20 21 21 21 LCS_GDT I 195 I 195 7 10 18 4 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT N 196 N 196 7 10 16 4 6 7 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 LCS_GDT G 197 G 197 4 10 16 4 4 4 4 9 10 10 11 11 13 13 14 15 16 17 19 20 21 21 21 LCS_GDT K 198 K 198 4 6 16 4 4 4 4 5 6 6 8 9 12 12 12 14 14 15 16 18 21 21 21 LCS_AVERAGE LCS_A: 7.02 ( 4.20 5.91 10.93 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 8 9 9 10 10 11 13 14 15 15 16 17 19 19 20 21 21 21 GDT PERCENT_AT 3.09 3.70 4.94 5.56 5.56 6.17 6.17 6.79 8.02 8.64 9.26 9.26 9.88 10.49 11.73 11.73 12.35 12.96 12.96 12.96 GDT RMS_LOCAL 0.32 0.53 0.89 1.21 1.21 1.74 1.70 2.21 3.16 3.67 3.74 3.74 3.96 4.52 5.02 5.02 5.27 5.55 5.55 5.55 GDT RMS_ALL_AT 17.99 17.74 15.56 12.80 12.80 16.21 13.02 14.57 6.31 5.95 6.02 6.02 6.14 5.77 5.73 5.73 5.59 5.55 5.55 5.55 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 178 N 178 32.616 0 0.243 1.082 33.726 0.000 0.000 LGA N 179 N 179 30.701 0 0.036 0.293 35.221 0.000 0.000 LGA Y 180 Y 180 26.896 0 0.580 1.321 28.350 0.000 0.000 LGA S 181 S 181 25.565 0 0.093 0.154 27.793 0.000 0.000 LGA G 182 G 182 20.820 0 0.019 0.019 22.899 0.000 0.000 LGA S 183 S 183 15.862 0 0.202 0.584 17.156 0.000 0.000 LGA Y 184 Y 184 13.205 0 0.086 0.299 22.488 0.000 0.000 LGA T 185 T 185 7.371 0 0.107 1.155 9.345 5.357 11.633 LGA A 186 A 186 7.687 0 0.578 0.570 10.074 11.071 8.857 LGA S 187 S 187 3.561 0 0.659 0.819 4.251 48.690 49.127 LGA S 188 S 188 0.709 0 0.667 0.846 4.014 70.476 67.778 LGA M 189 M 189 3.190 0 0.076 0.999 9.607 63.095 36.310 LGA K 190 K 190 1.648 0 0.087 0.768 12.982 69.286 37.831 LGA V 191 V 191 1.343 0 0.101 0.128 4.796 79.881 60.816 LGA Y 192 Y 192 1.643 0 0.059 1.332 11.746 77.381 35.794 LGA T 193 T 193 1.303 0 0.154 1.108 5.313 84.167 62.721 LGA Y 194 Y 194 1.395 0 0.116 0.335 9.418 77.381 38.532 LGA I 195 I 195 1.858 0 0.122 1.023 7.103 64.048 44.048 LGA N 196 N 196 1.995 0 0.073 1.068 6.721 65.595 50.774 LGA G 197 G 197 3.468 0 0.053 0.053 6.362 39.524 39.524 LGA K 198 K 198 6.848 2 0.513 0.638 8.606 15.714 8.889 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 162 162 100.00 162 SUMMARY(RMSD_GDC): 5.548 5.553 6.616 4.763 3.411 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 162 4.0 11 2.21 6.944 6.813 0.476 LGA_LOCAL RMSD: 2.209 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.568 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 5.548 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.332973 * X + 0.824517 * Y + -0.457494 * Z + 71.470406 Y_new = -0.304645 * X + 0.365094 * Y + 0.879715 * Z + 26.399769 Z_new = 0.892368 * X + 0.432294 * Y + 0.129619 * Z + -0.746610 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.400593 -1.102565 1.279487 [DEG: -137.5438 -63.1723 73.3092 ] ZXZ: -2.662035 1.440812 1.119678 [DEG: -152.5234 82.5524 64.1528 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0550TS055_1_1-D2 REMARK 2: T0550-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0550TS055_1_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 162 4.0 11 2.21 6.813 5.55 REMARK ---------------------------------------------------------- MOLECULE T0550TS055_1_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0550 REMARK PARENT N/A ATOM 2854 N ASN 178 66.816 8.599 6.198 1.00 0.00 N ATOM 2855 CA ASN 178 66.507 8.723 7.618 1.00 0.00 C ATOM 2856 C ASN 178 67.236 7.665 8.434 1.00 0.00 C ATOM 2857 O ASN 178 67.164 6.474 8.131 1.00 0.00 O ATOM 2858 CB ASN 178 65.013 8.642 7.870 1.00 0.00 C ATOM 2859 CG ASN 178 64.641 8.682 9.326 1.00 0.00 C ATOM 2860 OD1 ASN 178 65.316 9.319 10.142 1.00 0.00 O ATOM 2861 ND2 ASN 178 63.619 7.939 9.668 1.00 0.00 N ATOM 2862 H ASN 178 66.061 8.485 5.538 1.00 0.00 H ATOM 2863 HA ASN 178 66.851 9.690 7.989 1.00 0.00 H ATOM 2864 HB2 ASN 178 64.317 9.263 7.305 1.00 0.00 H ATOM 2865 HB3 ASN 178 64.946 7.612 7.519 1.00 0.00 H ATOM 2866 HD21 ASN 178 63.315 7.918 10.621 1.00 0.00 H ATOM 2867 HD22 ASN 178 63.143 7.396 8.979 1.00 0.00 H ATOM 2868 N ASN 179 67.938 8.105 9.474 1.00 0.00 N ATOM 2869 CA ASN 179 68.669 7.194 10.346 1.00 0.00 C ATOM 2870 C ASN 179 68.017 7.104 11.719 1.00 0.00 C ATOM 2871 O ASN 179 68.396 6.273 12.543 1.00 0.00 O ATOM 2872 CB ASN 179 70.124 7.604 10.483 1.00 0.00 C ATOM 2873 CG ASN 179 70.893 7.547 9.191 1.00 0.00 C ATOM 2874 OD1 ASN 179 71.146 6.468 8.644 1.00 0.00 O ATOM 2875 ND2 ASN 179 71.335 8.695 8.745 1.00 0.00 N ATOM 2876 H ASN 179 67.965 9.097 9.664 1.00 0.00 H ATOM 2877 HA ASN 179 68.650 6.187 9.929 1.00 0.00 H ATOM 2878 HB2 ASN 179 70.401 8.510 11.023 1.00 0.00 H ATOM 2879 HB3 ASN 179 70.380 6.731 11.083 1.00 0.00 H ATOM 2880 HD21 ASN 179 71.854 8.732 7.891 1.00 0.00 H ATOM 2881 HD22 ASN 179 71.154 9.533 9.258 1.00 0.00 H ATOM 2882 N TYR 180 67.036 7.968 11.961 1.00 0.00 N ATOM 2883 CA TYR 180 66.327 7.986 13.234 1.00 0.00 C ATOM 2884 C TYR 180 65.033 7.187 13.156 1.00 0.00 C ATOM 2885 O TYR 180 64.249 7.348 12.222 1.00 0.00 O ATOM 2886 CB TYR 180 66.030 9.425 13.660 1.00 0.00 C ATOM 2887 CG TYR 180 65.052 9.534 14.809 1.00 0.00 C ATOM 2888 CD1 TYR 180 65.397 9.107 16.083 1.00 0.00 C ATOM 2889 CD2 TYR 180 63.785 10.067 14.616 1.00 0.00 C ATOM 2890 CE1 TYR 180 64.508 9.203 17.135 1.00 0.00 C ATOM 2891 CE2 TYR 180 62.888 10.169 15.661 1.00 0.00 C ATOM 2892 CZ TYR 180 63.253 9.736 16.920 1.00 0.00 C ATOM 2893 OH TYR 180 62.363 9.836 17.965 1.00 0.00 H ATOM 2894 H TYR 180 66.774 8.628 11.242 1.00 0.00 H ATOM 2895 HA TYR 180 66.937 7.513 14.004 1.00 0.00 H ATOM 2896 HB2 TYR 180 66.980 9.879 13.948 1.00 0.00 H ATOM 2897 HB3 TYR 180 65.628 9.943 12.790 1.00 0.00 H ATOM 2898 HD1 TYR 180 66.390 8.687 16.246 1.00 0.00 H ATOM 2899 HD2 TYR 180 63.503 10.406 13.619 1.00 0.00 H ATOM 2900 HE1 TYR 180 64.793 8.864 18.130 1.00 0.00 H ATOM 2901 HE2 TYR 180 61.897 10.590 15.490 1.00 0.00 H ATOM 2902 HH TYR 180 61.445 9.791 17.682 1.00 0.00 H ATOM 2903 N SER 181 64.816 6.323 14.143 1.00 0.00 N ATOM 2904 CA SER 181 63.626 5.482 14.176 1.00 0.00 C ATOM 2905 C SER 181 62.726 5.843 15.351 1.00 0.00 C ATOM 2906 O SER 181 63.018 6.773 16.105 1.00 0.00 O ATOM 2907 CB SER 181 64.024 4.020 14.247 1.00 0.00 C ATOM 2908 OG SER 181 64.625 3.696 15.470 1.00 0.00 O ATOM 2909 H SER 181 65.493 6.250 14.889 1.00 0.00 H ATOM 2910 HA SER 181 63.052 5.506 13.249 1.00 0.00 H ATOM 2911 HB2 SER 181 63.131 3.409 14.118 1.00 0.00 H ATOM 2912 HB3 SER 181 64.725 3.810 13.440 1.00 0.00 H ATOM 2913 HG SER 181 64.862 2.765 15.473 1.00 0.00 H ATOM 2914 N GLY 182 61.633 5.106 15.503 1.00 0.00 N ATOM 2915 CA GLY 182 60.686 5.352 16.581 1.00 0.00 C ATOM 2916 C GLY 182 59.597 6.326 16.148 1.00 0.00 C ATOM 2917 O GLY 182 59.232 6.380 14.973 1.00 0.00 O ATOM 2918 H GLY 182 61.453 4.353 14.853 1.00 0.00 H ATOM 2919 HA2 GLY 182 60.222 4.409 16.872 1.00 0.00 H ATOM 2920 HA3 GLY 182 61.218 5.772 17.434 1.00 0.00 H ATOM 2921 N SER 183 59.081 7.093 17.102 1.00 0.00 N ATOM 2922 CA SER 183 58.077 8.109 16.810 1.00 0.00 C ATOM 2923 C SER 183 58.719 9.372 16.254 1.00 0.00 C ATOM 2924 O SER 183 59.908 9.615 16.452 1.00 0.00 O ATOM 2925 CB SER 183 57.277 8.426 18.059 1.00 0.00 C ATOM 2926 OG SER 183 58.059 9.054 19.038 1.00 0.00 O ATOM 2927 H SER 183 59.392 6.968 18.056 1.00 0.00 H ATOM 2928 HA SER 183 57.294 7.761 16.134 1.00 0.00 H ATOM 2929 HB2 SER 183 56.454 9.086 17.786 1.00 0.00 H ATOM 2930 HB3 SER 183 56.879 7.497 18.465 1.00 0.00 H ATOM 2931 HG SER 183 57.517 9.238 19.810 1.00 0.00 H ATOM 2932 N TYR 184 57.922 10.177 15.558 1.00 0.00 N ATOM 2933 CA TYR 184 58.423 11.395 14.930 1.00 0.00 C ATOM 2934 C TYR 184 57.554 12.595 15.287 1.00 0.00 C ATOM 2935 O TYR 184 56.370 12.449 15.585 1.00 0.00 O ATOM 2936 CB TYR 184 58.487 11.227 13.411 1.00 0.00 C ATOM 2937 CG TYR 184 59.399 10.109 12.955 1.00 0.00 C ATOM 2938 CD1 TYR 184 58.938 8.802 12.873 1.00 0.00 C ATOM 2939 CD2 TYR 184 60.717 10.363 12.606 1.00 0.00 C ATOM 2940 CE1 TYR 184 59.767 7.778 12.459 1.00 0.00 C ATOM 2941 CE2 TYR 184 61.554 9.347 12.190 1.00 0.00 C ATOM 2942 CZ TYR 184 61.075 8.054 12.117 1.00 0.00 C ATOM 2943 OH TYR 184 61.904 7.038 11.701 1.00 0.00 H ATOM 2944 H TYR 184 56.946 9.939 15.460 1.00 0.00 H ATOM 2945 HA TYR 184 59.426 11.615 15.298 1.00 0.00 H ATOM 2946 HB2 TYR 184 57.471 11.032 13.064 1.00 0.00 H ATOM 2947 HB3 TYR 184 58.837 12.172 12.997 1.00 0.00 H ATOM 2948 HD1 TYR 184 57.904 8.592 13.145 1.00 0.00 H ATOM 2949 HD2 TYR 184 61.089 11.386 12.666 1.00 0.00 H ATOM 2950 HE1 TYR 184 59.391 6.756 12.400 1.00 0.00 H ATOM 2951 HE2 TYR 184 62.587 9.567 11.921 1.00 0.00 H ATOM 2952 HH TYR 184 61.510 6.168 11.801 1.00 0.00 H ATOM 2953 N THR 185 58.152 13.781 15.254 1.00 0.00 N ATOM 2954 CA THR 185 57.418 15.015 15.503 1.00 0.00 C ATOM 2955 C THR 185 57.310 15.857 14.238 1.00 0.00 C ATOM 2956 O THR 185 58.082 15.680 13.296 1.00 0.00 O ATOM 2957 CB THR 185 58.083 15.855 16.609 1.00 0.00 C ATOM 2958 OG1 THR 185 59.342 16.358 16.141 1.00 0.00 O ATOM 2959 CG2 THR 185 58.311 15.011 17.854 1.00 0.00 C ATOM 2960 H THR 185 59.141 13.829 15.052 1.00 0.00 H ATOM 2961 HA THR 185 56.398 14.783 15.808 1.00 0.00 H ATOM 2962 HB THR 185 57.435 16.696 16.855 1.00 0.00 H ATOM 2963 HG1 THR 185 59.894 16.585 16.892 1.00 0.00 H ATOM 2964 HG21 THR 185 58.781 15.622 18.626 1.00 0.00 H ATOM 2965 HG22 THR 185 57.355 14.637 18.220 1.00 0.00 H ATOM 2966 HG23 THR 185 58.961 14.171 17.611 1.00 0.00 H ATOM 2967 N ALA 186 56.346 16.771 14.222 1.00 0.00 N ATOM 2968 CA ALA 186 56.178 17.689 13.102 1.00 0.00 C ATOM 2969 C ALA 186 55.302 18.875 13.487 1.00 0.00 C ATOM 2970 O ALA 186 54.363 18.736 14.272 1.00 0.00 O ATOM 2971 CB ALA 186 55.592 16.959 11.903 1.00 0.00 C ATOM 2972 H ALA 186 55.712 16.832 15.007 1.00 0.00 H ATOM 2973 HA ALA 186 57.155 18.085 12.827 1.00 0.00 H ATOM 2974 HB1 ALA 186 55.474 17.659 11.076 1.00 0.00 H ATOM 2975 HB2 ALA 186 56.261 16.153 11.604 1.00 0.00 H ATOM 2976 HB3 ALA 186 54.621 16.546 12.169 1.00 0.00 H ATOM 2977 N SER 187 55.613 20.040 12.932 1.00 0.00 N ATOM 2978 CA SER 187 54.856 21.253 13.217 1.00 0.00 C ATOM 2979 C SER 187 55.247 22.382 12.273 1.00 0.00 C ATOM 2980 O SER 187 56.430 22.599 12.008 1.00 0.00 O ATOM 2981 CB SER 187 55.064 21.672 14.660 1.00 0.00 C ATOM 2982 OG SER 187 54.421 22.881 14.954 1.00 0.00 O ATOM 2983 H SER 187 56.397 20.088 12.296 1.00 0.00 H ATOM 2984 HA SER 187 53.775 21.104 13.190 1.00 0.00 H ATOM 2985 HB2 SER 187 54.669 20.893 15.309 1.00 0.00 H ATOM 2986 HB3 SER 187 56.132 21.786 14.838 1.00 0.00 H ATOM 2987 HG SER 187 54.656 23.538 14.293 1.00 0.00 H ATOM 2988 N SER 188 54.248 23.098 11.770 1.00 0.00 N ATOM 2989 CA SER 188 54.490 24.269 10.936 1.00 0.00 C ATOM 2990 C SER 188 54.584 25.536 11.776 1.00 0.00 C ATOM 2991 O SER 188 54.198 25.545 12.946 1.00 0.00 O ATOM 2992 CB SER 188 53.394 24.406 9.897 1.00 0.00 C ATOM 2993 OG SER 188 52.150 24.685 10.478 1.00 0.00 O ATOM 2994 H SER 188 53.297 22.824 11.970 1.00 0.00 H ATOM 2995 HA SER 188 55.376 24.177 10.306 1.00 0.00 H ATOM 2996 HB2 SER 188 53.658 25.216 9.217 1.00 0.00 H ATOM 2997 HB3 SER 188 53.324 23.472 9.339 1.00 0.00 H ATOM 2998 HG SER 188 51.486 24.763 9.788 1.00 0.00 H ATOM 2999 N MET 189 55.098 26.603 11.176 1.00 0.00 N ATOM 3000 CA MET 189 55.237 27.879 11.866 1.00 0.00 C ATOM 3001 C MET 189 54.372 28.954 11.219 1.00 0.00 C ATOM 3002 O MET 189 54.706 29.474 10.155 1.00 0.00 O ATOM 3003 CB MET 189 56.701 28.317 11.879 1.00 0.00 C ATOM 3004 CG MET 189 56.957 29.640 12.586 1.00 0.00 C ATOM 3005 SD MET 189 58.701 30.100 12.591 1.00 0.00 S ATOM 3006 CE MET 189 59.360 28.910 13.754 1.00 0.00 C ATOM 3007 H MET 189 55.401 26.528 10.215 1.00 0.00 H ATOM 3008 HA MET 189 54.892 27.784 12.896 1.00 0.00 H ATOM 3009 HB2 MET 189 57.263 27.526 12.374 1.00 0.00 H ATOM 3010 HB3 MET 189 57.018 28.393 10.838 1.00 0.00 H ATOM 3011 HG2 MET 189 56.385 30.414 12.075 1.00 0.00 H ATOM 3012 HG3 MET 189 56.607 29.549 13.614 1.00 0.00 H ATOM 3013 HE1 MET 189 60.434 29.065 13.866 1.00 0.00 H ATOM 3014 HE2 MET 189 58.872 29.036 14.722 1.00 0.00 H ATOM 3015 HE3 MET 189 59.176 27.900 13.386 1.00 0.00 H ATOM 3016 N LYS 190 53.259 29.280 11.868 1.00 0.00 N ATOM 3017 CA LYS 190 52.342 30.290 11.354 1.00 0.00 C ATOM 3018 C LYS 190 52.790 31.692 11.751 1.00 0.00 C ATOM 3019 O LYS 190 52.880 32.012 12.937 1.00 0.00 O ATOM 3020 CB LYS 190 50.921 30.031 11.857 1.00 0.00 C ATOM 3021 CG LYS 190 49.871 30.979 11.294 1.00 0.00 C ATOM 3022 CD LYS 190 48.482 30.636 11.810 1.00 0.00 C ATOM 3023 CE LYS 190 47.431 31.580 11.244 1.00 0.00 C ATOM 3024 NZ LYS 190 46.070 31.269 11.756 1.00 0.00 N ATOM 3025 H LYS 190 53.042 28.816 12.738 1.00 0.00 H ATOM 3026 HA LYS 190 52.336 30.264 10.263 1.00 0.00 H ATOM 3027 HB2 LYS 190 50.669 29.006 11.582 1.00 0.00 H ATOM 3028 HB3 LYS 190 50.945 30.119 12.942 1.00 0.00 H ATOM 3029 HG2 LYS 190 50.129 31.996 11.590 1.00 0.00 H ATOM 3030 HG3 LYS 190 49.885 30.905 10.206 1.00 0.00 H ATOM 3031 HD2 LYS 190 48.247 29.612 11.517 1.00 0.00 H ATOM 3032 HD3 LYS 190 48.487 30.710 12.897 1.00 0.00 H ATOM 3033 HE2 LYS 190 47.701 32.597 11.522 1.00 0.00 H ATOM 3034 HE3 LYS 190 47.440 31.488 10.158 1.00 0.00 H ATOM 3035 HZ1 LYS 190 45.404 31.916 11.357 1.00 0.00 H ATOM 3036 HZ2 LYS 190 45.819 30.325 11.497 1.00 0.00 H ATOM 3037 HZ3 LYS 190 46.061 31.354 12.762 1.00 0.00 H ATOM 3038 N VAL 191 53.068 32.524 10.753 1.00 0.00 N ATOM 3039 CA VAL 191 53.451 33.909 10.995 1.00 0.00 C ATOM 3040 C VAL 191 52.605 34.868 10.167 1.00 0.00 C ATOM 3041 O VAL 191 52.375 34.640 8.980 1.00 0.00 O ATOM 3042 CB VAL 191 54.939 34.148 10.676 1.00 0.00 C ATOM 3043 CG1 VAL 191 55.311 35.601 10.933 1.00 0.00 C ATOM 3044 CG2 VAL 191 55.816 33.220 11.502 1.00 0.00 C ATOM 3045 H VAL 191 53.012 32.187 9.802 1.00 0.00 H ATOM 3046 HA VAL 191 53.267 34.196 12.031 1.00 0.00 H ATOM 3047 HB VAL 191 55.119 33.906 9.628 1.00 0.00 H ATOM 3048 HG11 VAL 191 56.366 35.752 10.702 1.00 0.00 H ATOM 3049 HG12 VAL 191 54.706 36.249 10.300 1.00 0.00 H ATOM 3050 HG13 VAL 191 55.132 35.842 11.980 1.00 0.00 H ATOM 3051 HG21 VAL 191 56.864 33.402 11.264 1.00 0.00 H ATOM 3052 HG22 VAL 191 55.647 33.408 12.562 1.00 0.00 H ATOM 3053 HG23 VAL 191 55.567 32.184 11.273 1.00 0.00 H ATOM 3054 N TYR 192 52.143 35.939 10.802 1.00 0.00 N ATOM 3055 CA TYR 192 51.331 36.941 10.122 1.00 0.00 C ATOM 3056 C TYR 192 51.970 38.322 10.214 1.00 0.00 C ATOM 3057 O TYR 192 52.217 38.831 11.306 1.00 0.00 O ATOM 3058 CB TYR 192 49.920 36.977 10.710 1.00 0.00 C ATOM 3059 CG TYR 192 49.013 38.003 10.069 1.00 0.00 C ATOM 3060 CD1 TYR 192 48.505 37.808 8.793 1.00 0.00 C ATOM 3061 CD2 TYR 192 48.667 39.166 10.742 1.00 0.00 C ATOM 3062 CE1 TYR 192 47.676 38.743 8.201 1.00 0.00 C ATOM 3063 CE2 TYR 192 47.840 40.108 10.161 1.00 0.00 C ATOM 3064 CZ TYR 192 47.346 39.892 8.890 1.00 0.00 C ATOM 3065 OH TYR 192 46.521 40.826 8.307 1.00 0.00 H ATOM 3066 H TYR 192 52.358 36.063 11.781 1.00 0.00 H ATOM 3067 HA TYR 192 51.260 36.702 9.061 1.00 0.00 H ATOM 3068 HB2 TYR 192 49.491 35.982 10.580 1.00 0.00 H ATOM 3069 HB3 TYR 192 50.018 37.193 11.773 1.00 0.00 H ATOM 3070 HD1 TYR 192 48.770 36.897 8.255 1.00 0.00 H ATOM 3071 HD2 TYR 192 49.060 39.330 11.745 1.00 0.00 H ATOM 3072 HE1 TYR 192 47.285 38.576 7.199 1.00 0.00 H ATOM 3073 HE2 TYR 192 47.580 41.015 10.707 1.00 0.00 H ATOM 3074 HH TYR 192 46.356 41.586 8.872 1.00 0.00 H ATOM 3075 N THR 193 52.234 38.923 9.059 1.00 0.00 N ATOM 3076 CA THR 193 52.787 40.272 9.006 1.00 0.00 C ATOM 3077 C THR 193 51.694 41.309 8.786 1.00 0.00 C ATOM 3078 O THR 193 50.544 40.964 8.511 1.00 0.00 O ATOM 3079 CB THR 193 53.839 40.407 7.889 1.00 0.00 C ATOM 3080 OG1 THR 193 53.209 40.241 6.613 1.00 0.00 O ATOM 3081 CG2 THR 193 54.929 39.360 8.053 1.00 0.00 C ATOM 3082 H THR 193 52.047 38.434 8.195 1.00 0.00 H ATOM 3083 HA THR 193 53.255 40.515 9.960 1.00 0.00 H ATOM 3084 HB THR 193 54.282 41.402 7.939 1.00 0.00 H ATOM 3085 HG1 THR 193 53.867 40.327 5.918 1.00 0.00 H ATOM 3086 HG21 THR 193 55.663 39.471 7.255 1.00 0.00 H ATOM 3087 HG22 THR 193 55.418 39.491 9.018 1.00 0.00 H ATOM 3088 HG23 THR 193 54.487 38.365 8.002 1.00 0.00 H ATOM 3089 N TYR 194 52.056 42.580 8.911 1.00 0.00 N ATOM 3090 CA TYR 194 51.091 43.667 8.804 1.00 0.00 C ATOM 3091 C TYR 194 51.481 44.645 7.703 1.00 0.00 C ATOM 3092 O TYR 194 52.660 44.804 7.391 1.00 0.00 O ATOM 3093 CB TYR 194 50.964 44.405 10.139 1.00 0.00 C ATOM 3094 CG TYR 194 50.437 43.545 11.266 1.00 0.00 C ATOM 3095 CD1 TYR 194 51.292 42.759 12.024 1.00 0.00 C ATOM 3096 CD2 TYR 194 49.084 43.526 11.572 1.00 0.00 C ATOM 3097 CE1 TYR 194 50.815 41.971 13.054 1.00 0.00 C ATOM 3098 CE2 TYR 194 48.595 42.744 12.600 1.00 0.00 C ATOM 3099 CZ TYR 194 49.465 41.967 13.339 1.00 0.00 C ATOM 3100 OH TYR 194 48.984 41.187 14.365 1.00 0.00 H ATOM 3101 H TYR 194 53.027 42.801 9.084 1.00 0.00 H ATOM 3102 HA TYR 194 50.113 43.268 8.532 1.00 0.00 H ATOM 3103 HB2 TYR 194 51.957 44.775 10.399 1.00 0.00 H ATOM 3104 HB3 TYR 194 50.293 45.248 9.979 1.00 0.00 H ATOM 3105 HD1 TYR 194 52.357 42.767 11.792 1.00 0.00 H ATOM 3106 HD2 TYR 194 48.402 44.141 10.984 1.00 0.00 H ATOM 3107 HE1 TYR 194 51.499 41.357 13.640 1.00 0.00 H ATOM 3108 HE2 TYR 194 47.529 42.741 12.823 1.00 0.00 H ATOM 3109 HH TYR 194 48.033 41.259 14.478 1.00 0.00 H ATOM 3110 N ILE 195 50.482 45.298 7.117 1.00 0.00 N ATOM 3111 CA ILE 195 50.709 46.189 5.987 1.00 0.00 C ATOM 3112 C ILE 195 49.686 47.317 5.960 1.00 0.00 C ATOM 3113 O ILE 195 48.546 47.144 6.393 1.00 0.00 O ATOM 3114 CB ILE 195 50.657 45.429 4.649 1.00 0.00 C ATOM 3115 CG1 ILE 195 51.177 46.313 3.512 1.00 0.00 C ATOM 3116 CG2 ILE 195 49.238 44.963 4.357 1.00 0.00 C ATOM 3117 CD1 ILE 195 51.496 45.553 2.245 1.00 0.00 C ATOM 3118 H ILE 195 49.543 45.173 7.465 1.00 0.00 H ATOM 3119 HA ILE 195 51.671 46.692 6.080 1.00 0.00 H ATOM 3120 HB ILE 195 51.319 44.566 4.705 1.00 0.00 H ATOM 3121 HG12 ILE 195 50.412 47.060 3.304 1.00 0.00 H ATOM 3122 HG13 ILE 195 52.079 46.809 3.874 1.00 0.00 H ATOM 3123 HG21 ILE 195 49.220 44.428 3.408 1.00 0.00 H ATOM 3124 HG22 ILE 195 48.904 44.300 5.153 1.00 0.00 H ATOM 3125 HG23 ILE 195 48.576 45.826 4.300 1.00 0.00 H ATOM 3126 HD11 ILE 195 51.861 46.245 1.486 1.00 0.00 H ATOM 3127 HD12 ILE 195 52.264 44.805 2.451 1.00 0.00 H ATOM 3128 HD13 ILE 195 50.598 45.057 1.881 1.00 0.00 H ATOM 3129 N ASN 196 50.098 48.472 5.448 1.00 0.00 N ATOM 3130 CA ASN 196 49.228 49.641 5.398 1.00 0.00 C ATOM 3131 C ASN 196 48.722 49.891 3.983 1.00 0.00 C ATOM 3132 O ASN 196 48.512 51.036 3.582 1.00 0.00 O ATOM 3133 CB ASN 196 49.927 50.878 5.931 1.00 0.00 C ATOM 3134 CG ASN 196 50.274 50.794 7.392 1.00 0.00 C ATOM 3135 OD1 ASN 196 49.393 50.732 8.257 1.00 0.00 O ATOM 3136 ND2 ASN 196 51.549 50.873 7.675 1.00 0.00 N ATOM 3137 H ASN 196 51.036 48.541 5.084 1.00 0.00 H ATOM 3138 HA ASN 196 48.345 49.473 6.016 1.00 0.00 H ATOM 3139 HB2 ASN 196 50.764 51.323 5.390 1.00 0.00 H ATOM 3140 HB3 ASN 196 49.044 51.505 5.816 1.00 0.00 H ATOM 3141 HD21 ASN 196 51.854 50.824 8.627 1.00 0.00 H ATOM 3142 HD22 ASN 196 52.219 50.982 6.941 1.00 0.00 H ATOM 3143 N GLY 197 48.530 48.814 3.228 1.00 0.00 N ATOM 3144 CA GLY 197 48.030 48.914 1.863 1.00 0.00 C ATOM 3145 C GLY 197 49.174 49.076 0.869 1.00 0.00 C ATOM 3146 O GLY 197 48.948 49.250 -0.329 1.00 0.00 O ATOM 3147 H GLY 197 48.735 47.902 3.613 1.00 0.00 H ATOM 3148 HA2 GLY 197 47.474 48.008 1.620 1.00 0.00 H ATOM 3149 HA3 GLY 197 47.369 49.776 1.787 1.00 0.00 H ATOM 3150 N LYS 198 50.402 49.018 1.374 1.00 0.00 N ATOM 3151 CA LYS 198 51.583 49.165 0.531 1.00 0.00 C ATOM 3152 C LYS 198 52.860 48.923 1.327 1.00 0.00 C ATOM 3153 O LYS 198 53.482 48.188 1.059 1.00 0.00 O ATOM 3154 OXT LYS 198 53.116 49.615 2.273 1.00 0.00 O ATOM 3155 CB LYS 198 51.616 50.555 -0.107 1.00 0.00 C ATOM 3156 CG LYS 198 52.828 50.812 -0.992 1.00 0.00 C ATOM 3157 CD LYS 198 52.749 52.178 -1.656 1.00 0.00 C ATOM 3158 CE LYS 198 53.953 52.431 -2.552 1.00 0.00 C ATOM 3159 NZ LYS 198 53.924 53.791 -3.153 1.00 0.00 N ATOM 3160 H LYS 198 50.520 48.868 2.365 1.00 0.00 H ATOM 3161 HA LYS 198 51.565 48.419 -0.263 1.00 0.00 H ATOM 3162 HB2 LYS 198 50.707 50.656 -0.700 1.00 0.00 H ATOM 3163 HB3 LYS 198 51.602 51.282 0.706 1.00 0.00 H ATOM 3164 HG2 LYS 198 53.726 50.759 -0.375 1.00 0.00 H ATOM 3165 HG3 LYS 198 52.869 50.038 -1.757 1.00 0.00 H ATOM 3166 HD2 LYS 198 51.836 52.223 -2.253 1.00 0.00 H ATOM 3167 HD3 LYS 198 52.711 52.941 -0.879 1.00 0.00 H ATOM 3168 HE2 LYS 198 54.855 52.319 -1.952 1.00 0.00 H ATOM 3169 HE3 LYS 198 53.952 51.683 -3.345 1.00 0.00 H ATOM 3170 HZ1 LYS 198 54.738 53.918 -3.739 1.00 0.00 H ATOM 3171 HZ2 LYS 198 53.088 53.895 -3.711 1.00 0.00 H ATOM 3172 HZ3 LYS 198 53.927 54.485 -2.419 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 162 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.41 52.5 40 12.4 322 ARMSMC SECONDARY STRUCTURE . . 30.54 60.9 23 12.8 180 ARMSMC SURFACE . . . . . . . . 64.04 53.8 26 12.5 208 ARMSMC BURIED . . . . . . . . 53.03 50.0 14 12.3 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.17 38.9 18 12.2 147 ARMSSC1 RELIABLE SIDE CHAINS . 99.98 35.3 17 12.2 139 ARMSSC1 SECONDARY STRUCTURE . . 94.61 36.4 11 12.9 85 ARMSSC1 SURFACE . . . . . . . . 111.35 16.7 12 12.6 95 ARMSSC1 BURIED . . . . . . . . 59.39 83.3 6 11.5 52 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.81 72.7 11 9.7 113 ARMSSC2 RELIABLE SIDE CHAINS . 17.73 87.5 8 8.4 95 ARMSSC2 SECONDARY STRUCTURE . . 12.61 100.0 7 10.9 64 ARMSSC2 SURFACE . . . . . . . . 61.68 71.4 7 10.1 69 ARMSSC2 BURIED . . . . . . . . 21.00 75.0 4 9.1 44 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.38 50.0 2 4.9 41 ARMSSC3 RELIABLE SIDE CHAINS . 101.38 50.0 2 5.7 35 ARMSSC3 SECONDARY STRUCTURE . . 101.38 50.0 2 7.7 26 ARMSSC3 SURFACE . . . . . . . . 11.99 100.0 1 3.6 28 ARMSSC3 BURIED . . . . . . . . 142.87 0.0 1 7.7 13 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 16.48 100.0 1 6.2 16 ARMSSC4 RELIABLE SIDE CHAINS . 16.48 100.0 1 6.2 16 ARMSSC4 SECONDARY STRUCTURE . . 16.48 100.0 1 7.1 14 ARMSSC4 SURFACE . . . . . . . . 16.48 100.0 1 7.7 13 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.55 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.55 21 13.0 162 CRMSCA CRN = ALL/NP . . . . . 0.2642 CRMSCA SECONDARY STRUCTURE . . 5.49 12 13.3 90 CRMSCA SURFACE . . . . . . . . 5.72 14 13.3 105 CRMSCA BURIED . . . . . . . . 5.18 7 12.3 57 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.67 103 12.9 800 CRMSMC SECONDARY STRUCTURE . . 5.58 59 13.2 447 CRMSMC SURFACE . . . . . . . . 5.77 68 13.2 517 CRMSMC BURIED . . . . . . . . 5.48 35 12.4 283 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.86 78 11.6 671 CRMSSC RELIABLE SIDE CHAINS . 8.10 70 11.6 605 CRMSSC SECONDARY STRUCTURE . . 8.24 51 12.7 403 CRMSSC SURFACE . . . . . . . . 7.33 44 10.8 406 CRMSSC BURIED . . . . . . . . 8.49 34 12.8 265 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.76 162 12.3 1319 CRMSALL SECONDARY STRUCTURE . . 7.02 99 13.0 763 CRMSALL SURFACE . . . . . . . . 6.48 100 12.1 826 CRMSALL BURIED . . . . . . . . 7.20 62 12.6 493 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.122 1.000 0.500 21 13.0 162 ERRCA SECONDARY STRUCTURE . . 5.081 1.000 0.500 12 13.3 90 ERRCA SURFACE . . . . . . . . 5.210 1.000 0.500 14 13.3 105 ERRCA BURIED . . . . . . . . 4.944 1.000 0.500 7 12.3 57 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.269 1.000 0.500 103 12.9 800 ERRMC SECONDARY STRUCTURE . . 5.201 1.000 0.500 59 13.2 447 ERRMC SURFACE . . . . . . . . 5.292 1.000 0.500 68 13.2 517 ERRMC BURIED . . . . . . . . 5.225 1.000 0.500 35 12.4 283 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.343 1.000 0.500 78 11.6 671 ERRSC RELIABLE SIDE CHAINS . 7.601 1.000 0.500 70 11.6 605 ERRSC SECONDARY STRUCTURE . . 7.808 1.000 0.500 51 12.7 403 ERRSC SURFACE . . . . . . . . 6.728 1.000 0.500 44 10.8 406 ERRSC BURIED . . . . . . . . 8.140 1.000 0.500 34 12.8 265 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.221 1.000 0.500 162 12.3 1319 ERRALL SECONDARY STRUCTURE . . 6.483 1.000 0.500 99 13.0 763 ERRALL SURFACE . . . . . . . . 5.906 1.000 0.500 100 12.1 826 ERRALL BURIED . . . . . . . . 6.729 1.000 0.500 62 12.6 493 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 10 21 21 162 DISTCA CA (P) 0.00 0.62 1.85 6.17 12.96 162 DISTCA CA (RMS) 0.00 1.08 2.14 3.49 5.55 DISTCA ALL (N) 1 3 16 58 145 162 1319 DISTALL ALL (P) 0.08 0.23 1.21 4.40 10.99 1319 DISTALL ALL (RMS) 0.82 1.13 2.41 3.68 6.01 DISTALL END of the results output