####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 296), selected 35 , name T0548TS490_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS490_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 12 - 32 4.86 7.76 LONGEST_CONTINUOUS_SEGMENT: 21 13 - 33 4.91 7.99 LONGEST_CONTINUOUS_SEGMENT: 21 14 - 34 4.99 8.24 LCS_AVERAGE: 56.08 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 12 - 27 1.51 8.59 LCS_AVERAGE: 35.67 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 14 - 27 0.88 8.72 LCS_AVERAGE: 26.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 5 16 21 3 4 5 10 14 16 17 17 18 20 21 22 23 24 26 27 29 30 32 33 LCS_GDT F 13 F 13 5 16 21 3 6 12 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT H 14 H 14 14 16 21 3 10 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT Y 15 Y 15 14 16 21 3 9 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT T 16 T 16 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT V 17 V 17 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT T 18 T 18 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT D 19 D 19 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT I 20 I 20 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT K 21 K 21 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT D 22 D 22 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT L 23 L 23 14 16 21 9 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT T 24 T 24 14 16 21 7 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT K 25 K 25 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT L 26 L 26 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT G 27 G 27 14 16 21 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT A 28 A 28 3 15 21 3 3 4 4 6 11 13 16 17 18 20 22 23 24 27 28 29 30 32 33 LCS_GDT I 29 I 29 4 4 21 3 3 4 5 7 11 13 16 17 17 20 22 23 24 27 28 29 30 32 33 LCS_GDT Y 30 Y 30 4 4 21 3 3 4 5 7 11 13 16 17 17 19 22 23 24 27 28 29 30 32 33 LCS_GDT D 31 D 31 4 5 21 3 4 4 4 5 6 7 8 10 15 18 19 21 24 27 28 29 30 32 33 LCS_GDT K 32 K 32 4 5 21 3 4 4 5 7 10 11 12 13 13 14 17 20 24 27 28 29 30 32 33 LCS_GDT T 33 T 33 4 5 21 3 4 4 5 7 10 11 12 13 13 14 15 18 23 27 28 29 30 32 33 LCS_GDT K 34 K 34 4 11 21 3 4 6 8 8 10 11 12 13 13 14 15 17 20 25 28 29 30 32 33 LCS_GDT K 35 K 35 5 11 17 3 4 6 9 10 10 11 12 13 13 14 17 22 24 27 28 29 30 32 33 LCS_GDT Y 36 Y 36 8 11 17 3 5 8 9 10 10 11 12 13 19 21 22 23 24 27 28 29 30 32 33 LCS_GDT W 37 W 37 8 11 17 3 7 8 9 10 10 16 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT V 38 V 38 8 11 17 3 7 8 9 10 10 11 12 13 13 13 14 19 23 26 28 29 30 32 33 LCS_GDT Y 39 Y 39 8 11 17 3 7 8 9 10 10 11 12 13 13 13 14 14 16 20 25 27 30 32 33 LCS_GDT Q 40 Q 40 8 11 17 3 7 8 9 10 10 11 12 13 13 13 14 14 16 20 25 27 29 32 33 LCS_GDT G 41 G 41 8 11 17 3 7 8 9 10 10 11 12 13 13 13 14 14 16 20 25 27 30 32 33 LCS_GDT K 42 K 42 8 11 17 3 7 8 9 10 10 11 16 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT P 43 P 43 8 11 17 3 7 8 9 10 10 11 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT V 44 V 44 8 11 17 3 5 7 8 13 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 LCS_GDT M 45 M 45 5 11 17 3 5 7 8 9 10 11 13 17 17 18 19 21 24 27 28 29 30 31 31 LCS_GDT P 46 P 46 5 11 17 3 5 7 8 9 10 11 12 12 14 16 17 19 21 21 21 22 26 28 29 LCS_AVERAGE LCS_A: 39.29 ( 26.12 35.67 56.08 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 14 15 15 16 17 17 18 20 21 22 23 24 27 28 29 30 32 33 GDT PERCENT_AT 28.57 34.29 40.00 42.86 42.86 45.71 48.57 48.57 51.43 57.14 60.00 62.86 65.71 68.57 77.14 80.00 82.86 85.71 91.43 94.29 GDT RMS_LOCAL 0.26 0.37 0.88 1.15 1.15 1.51 1.75 1.75 1.98 2.69 3.08 3.38 3.70 4.00 5.23 5.39 5.57 5.71 6.33 6.61 GDT RMS_ALL_AT 9.19 9.13 8.72 8.60 8.60 8.59 8.57 8.57 8.52 8.34 8.17 8.04 7.88 7.74 7.75 7.74 7.37 7.45 7.19 7.21 # Checking swapping # possible swapping detected: D 31 D 31 # possible swapping detected: Y 36 Y 36 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 3.458 0 0.634 1.314 4.445 53.810 47.714 LGA F 13 F 13 1.509 0 0.087 0.634 4.314 75.119 62.900 LGA H 14 H 14 1.101 0 0.071 1.064 4.738 85.952 68.048 LGA Y 15 Y 15 1.643 0 0.317 0.619 4.194 73.333 61.349 LGA T 16 T 16 1.853 0 0.147 0.227 2.498 72.857 70.544 LGA V 17 V 17 2.200 0 0.078 0.897 3.162 70.952 64.014 LGA T 18 T 18 1.169 0 0.031 0.124 1.468 85.952 84.014 LGA D 19 D 19 0.769 0 0.082 0.112 2.433 90.476 80.655 LGA I 20 I 20 1.311 0 0.093 0.219 1.850 81.429 80.357 LGA K 21 K 21 1.116 0 0.028 0.897 7.412 85.952 58.783 LGA D 22 D 22 1.205 0 0.033 0.307 2.906 81.548 73.214 LGA L 23 L 23 1.604 0 0.176 0.373 4.327 81.548 65.179 LGA T 24 T 24 0.567 0 0.036 1.332 2.517 95.238 84.762 LGA K 25 K 25 0.867 0 0.139 0.835 3.287 90.595 78.519 LGA L 26 L 26 1.400 0 0.083 0.251 2.822 81.429 73.155 LGA G 27 G 27 1.354 0 0.265 0.265 4.348 60.833 60.833 LGA A 28 A 28 8.240 0 0.670 0.626 9.918 8.571 6.952 LGA I 29 I 29 9.534 0 0.192 1.051 11.695 1.071 1.607 LGA Y 30 Y 30 10.371 0 0.341 1.017 17.145 0.000 0.119 LGA D 31 D 31 15.374 0 0.149 1.071 20.941 0.000 0.000 LGA K 32 K 32 15.474 0 0.299 0.718 16.440 0.000 0.000 LGA T 33 T 33 15.552 0 0.240 1.407 16.902 0.000 0.000 LGA K 34 K 34 14.825 0 0.176 0.717 17.821 0.000 0.000 LGA K 35 K 35 11.763 0 0.300 1.152 14.436 1.310 0.582 LGA Y 36 Y 36 8.260 0 0.216 0.979 15.077 5.238 1.865 LGA W 37 W 37 4.445 0 0.089 0.924 6.857 31.786 42.245 LGA V 38 V 38 8.992 0 0.039 0.750 13.771 2.619 1.497 LGA Y 39 Y 39 11.485 0 0.138 0.260 21.359 0.119 0.040 LGA Q 40 Q 40 15.450 0 0.031 0.966 19.434 0.000 0.000 LGA G 41 G 41 14.604 0 0.161 0.161 14.604 0.000 0.000 LGA K 42 K 42 7.899 0 0.182 0.613 10.161 9.405 8.148 LGA P 43 P 43 6.639 0 0.135 0.204 10.762 24.405 14.354 LGA V 44 V 44 3.450 0 0.099 1.033 6.816 32.619 37.483 LGA M 45 M 45 10.547 0 0.194 1.011 13.828 1.786 0.893 LGA P 46 P 46 14.411 0 0.103 0.129 16.637 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 296 100.00 35 SUMMARY(RMSD_GDC): 7.151 7.066 7.983 39.599 35.138 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 17 1.75 51.429 47.289 0.918 LGA_LOCAL RMSD: 1.751 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.573 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 7.151 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.356089 * X + 0.690291 * Y + 0.629840 * Z + -141.962479 Y_new = 0.034127 * X + 0.663965 * Y + -0.746985 * Z + -17.801466 Z_new = -0.933829 * X + 0.287488 * Y + 0.212873 * Z + 38.701328 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.095547 1.204970 0.933430 [DEG: 5.4744 69.0397 53.4816 ] ZXZ: 0.700520 1.356282 -1.272145 [DEG: 40.1368 77.7092 -72.8885 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS490_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS490_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 17 1.75 47.289 7.15 REMARK ---------------------------------------------------------- MOLECULE T0548TS490_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 87 N HIS 12 -41.347 -28.749 37.051 1.00316.67 N ATOM 88 CA HIS 12 -39.916 -28.771 37.121 1.00316.67 C ATOM 89 ND1 HIS 12 -39.336 -31.476 38.793 1.00316.67 N ATOM 90 CG HIS 12 -39.811 -31.216 37.529 1.00316.67 C ATOM 91 CB HIS 12 -39.319 -30.107 36.665 1.00316.67 C ATOM 92 NE2 HIS 12 -40.949 -32.954 38.399 1.00316.67 N ATOM 93 CD2 HIS 12 -40.794 -32.128 37.303 1.00316.67 C ATOM 94 CE1 HIS 12 -40.053 -32.525 39.269 1.00316.67 C ATOM 95 C HIS 12 -39.315 -27.710 36.271 1.00316.67 C ATOM 96 O HIS 12 -38.237 -27.215 36.599 1.00316.67 O ATOM 97 N PHE 13 -39.956 -27.365 35.138 1.00512.37 N ATOM 98 CA PHE 13 -39.359 -26.376 34.290 1.00512.37 C ATOM 99 CB PHE 13 -40.068 -26.172 32.933 1.00512.37 C ATOM 100 CG PHE 13 -40.102 -27.449 32.156 1.00512.37 C ATOM 101 CD1 PHE 13 -38.949 -28.128 31.838 1.00512.37 C ATOM 102 CD2 PHE 13 -41.298 -27.945 31.694 1.00512.37 C ATOM 103 CE1 PHE 13 -38.996 -29.297 31.111 1.00512.37 C ATOM 104 CE2 PHE 13 -41.352 -29.112 30.966 1.00512.37 C ATOM 105 CZ PHE 13 -40.198 -29.795 30.675 1.00512.37 C ATOM 106 C PHE 13 -39.412 -25.057 34.998 1.00512.37 C ATOM 107 O PHE 13 -40.482 -24.553 35.335 1.00512.37 O ATOM 108 N HIS 14 -38.238 -24.443 35.221 1.00389.99 N ATOM 109 CA HIS 14 -38.221 -23.140 35.818 1.00389.99 C ATOM 110 ND1 HIS 14 -36.755 -22.415 38.839 1.00389.99 N ATOM 111 CG HIS 14 -36.431 -23.104 37.693 1.00389.99 C ATOM 112 CB HIS 14 -36.846 -22.670 36.325 1.00389.99 C ATOM 113 NE2 HIS 14 -35.460 -24.110 39.462 1.00389.99 N ATOM 114 CD2 HIS 14 -35.642 -24.139 38.091 1.00389.99 C ATOM 115 CE1 HIS 14 -36.147 -23.057 39.868 1.00389.99 C ATOM 116 C HIS 14 -38.503 -22.195 34.709 1.00389.99 C ATOM 117 O HIS 14 -37.654 -21.989 33.843 1.00389.99 O ATOM 118 N TYR 15 -39.697 -21.580 34.705 1.00507.97 N ATOM 119 CA TYR 15 -39.951 -20.670 33.634 1.00507.97 C ATOM 120 CB TYR 15 -41.415 -20.616 33.197 1.00507.97 C ATOM 121 CG TYR 15 -41.891 -21.955 32.758 1.00507.97 C ATOM 122 CD1 TYR 15 -41.313 -22.625 31.704 1.00507.97 C ATOM 123 CD2 TYR 15 -42.973 -22.511 33.394 1.00507.97 C ATOM 124 CE1 TYR 15 -41.796 -23.853 31.315 1.00507.97 C ATOM 125 CE2 TYR 15 -43.457 -23.734 33.009 1.00507.97 C ATOM 126 CZ TYR 15 -42.869 -24.410 31.969 1.00507.97 C ATOM 127 OH TYR 15 -43.370 -25.667 31.573 1.00507.97 O ATOM 128 C TYR 15 -39.673 -19.322 34.197 1.00507.97 C ATOM 129 O TYR 15 -40.604 -18.562 34.448 1.00507.97 O ATOM 130 N THR 16 -38.373 -18.972 34.276 1.00331.08 N ATOM 131 CA THR 16 -37.850 -17.813 34.948 1.00331.08 C ATOM 132 CB THR 16 -36.468 -17.447 34.506 1.00331.08 C ATOM 133 OG1 THR 16 -36.458 -17.226 33.107 1.00331.08 O ATOM 134 CG2 THR 16 -35.511 -18.589 34.869 1.00331.08 C ATOM 135 C THR 16 -38.724 -16.625 34.783 1.00331.08 C ATOM 136 O THR 16 -39.191 -16.311 33.694 1.00331.08 O ATOM 137 N VAL 17 -38.960 -15.934 35.913 1.00228.97 N ATOM 138 CA VAL 17 -39.836 -14.808 35.957 1.00228.97 C ATOM 139 CB VAL 17 -39.982 -14.228 37.338 1.00228.97 C ATOM 140 CG1 VAL 17 -38.644 -13.613 37.776 1.00228.97 C ATOM 141 CG2 VAL 17 -41.154 -13.235 37.325 1.00228.97 C ATOM 142 C VAL 17 -39.293 -13.752 35.046 1.00228.97 C ATOM 143 O VAL 17 -40.056 -12.995 34.453 1.00228.97 O ATOM 144 N THR 18 -37.955 -13.636 34.948 1.00189.25 N ATOM 145 CA THR 18 -37.352 -12.656 34.088 1.00189.25 C ATOM 146 CB THR 18 -35.869 -12.560 34.288 1.00189.25 C ATOM 147 OG1 THR 18 -35.583 -12.226 35.638 1.00189.25 O ATOM 148 CG2 THR 18 -35.311 -11.477 33.348 1.00189.25 C ATOM 149 C THR 18 -37.596 -12.990 32.649 1.00189.25 C ATOM 150 O THR 18 -37.899 -12.110 31.849 1.00189.25 O ATOM 151 N ASP 19 -37.452 -14.276 32.275 1.00315.17 N ATOM 152 CA ASP 19 -37.644 -14.687 30.913 1.00315.17 C ATOM 153 CB ASP 19 -37.211 -16.135 30.658 1.00315.17 C ATOM 154 CG ASP 19 -35.685 -16.098 30.667 1.00315.17 C ATOM 155 OD1 ASP 19 -35.123 -15.006 30.386 1.00315.17 O ATOM 156 OD2 ASP 19 -35.056 -17.150 30.949 1.00315.17 O ATOM 157 C ASP 19 -39.079 -14.491 30.573 1.00315.17 C ATOM 158 O ASP 19 -39.427 -14.127 29.450 1.00315.17 O ATOM 159 N ILE 20 -39.957 -14.718 31.561 1.00369.90 N ATOM 160 CA ILE 20 -41.345 -14.500 31.341 1.00369.90 C ATOM 161 CB ILE 20 -42.121 -14.590 32.620 1.00369.90 C ATOM 162 CG2 ILE 20 -43.590 -14.281 32.304 1.00369.90 C ATOM 163 CG1 ILE 20 -41.883 -15.923 33.338 1.00369.90 C ATOM 164 CD1 ILE 20 -42.379 -15.914 34.781 1.00369.90 C ATOM 165 C ILE 20 -41.482 -13.051 30.972 1.00369.90 C ATOM 166 O ILE 20 -42.072 -12.716 29.948 1.00369.90 O ATOM 167 N LYS 21 -40.879 -12.158 31.787 1.00287.03 N ATOM 168 CA LYS 21 -41.055 -10.736 31.645 1.00287.03 C ATOM 169 CB LYS 21 -40.355 -9.924 32.750 1.00287.03 C ATOM 170 CG LYS 21 -40.966 -10.093 34.141 1.00287.03 C ATOM 171 CD LYS 21 -40.106 -9.490 35.255 1.00287.03 C ATOM 172 CE LYS 21 -40.709 -9.650 36.651 1.00287.03 C ATOM 173 NZ LYS 21 -41.963 -8.872 36.754 1.00287.03 N ATOM 174 C LYS 21 -40.535 -10.206 30.345 1.00287.03 C ATOM 175 O LYS 21 -41.232 -9.466 29.651 1.00287.03 O ATOM 176 N ASP 22 -39.300 -10.568 29.968 1.00411.02 N ATOM 177 CA ASP 22 -38.730 -9.991 28.787 1.00411.02 C ATOM 178 CB ASP 22 -37.243 -10.327 28.573 1.00411.02 C ATOM 179 CG ASP 22 -36.432 -9.433 29.504 1.00411.02 C ATOM 180 OD1 ASP 22 -37.010 -8.931 30.505 1.00411.02 O ATOM 181 OD2 ASP 22 -35.225 -9.220 29.211 1.00411.02 O ATOM 182 C ASP 22 -39.496 -10.419 27.588 1.00411.02 C ATOM 183 O ASP 22 -39.657 -9.670 26.630 1.00411.02 O ATOM 184 N LEU 23 -39.942 -11.675 27.623 1.00611.86 N ATOM 185 CA LEU 23 -40.685 -12.359 26.618 1.00611.86 C ATOM 186 CB LEU 23 -40.510 -13.858 26.821 1.00611.86 C ATOM 187 CG LEU 23 -39.020 -14.229 26.627 1.00611.86 C ATOM 188 CD1 LEU 23 -38.762 -15.741 26.593 1.00611.86 C ATOM 189 CD2 LEU 23 -38.443 -13.521 25.394 1.00611.86 C ATOM 190 C LEU 23 -42.104 -11.871 26.580 1.00611.86 C ATOM 191 O LEU 23 -42.839 -12.142 25.629 1.00611.86 O ATOM 192 N THR 24 -42.559 -11.251 27.686 1.00422.32 N ATOM 193 CA THR 24 -43.873 -10.686 27.782 1.00422.32 C ATOM 194 CB THR 24 -44.206 -10.427 29.220 1.00422.32 C ATOM 195 OG1 THR 24 -45.548 -10.799 29.461 1.00422.32 O ATOM 196 CG2 THR 24 -44.017 -8.934 29.535 1.00422.32 C ATOM 197 C THR 24 -43.872 -9.431 26.956 1.00422.32 C ATOM 198 O THR 24 -44.845 -9.088 26.284 1.00422.32 O ATOM 199 N LYS 25 -42.753 -8.689 27.017 1.00335.20 N ATOM 200 CA LYS 25 -42.579 -7.522 26.210 1.00335.20 C ATOM 201 CB LYS 25 -41.297 -6.753 26.576 1.00335.20 C ATOM 202 CG LYS 25 -41.315 -6.162 27.989 1.00335.20 C ATOM 203 CD LYS 25 -39.939 -5.718 28.492 1.00335.20 C ATOM 204 CE LYS 25 -39.119 -6.850 29.112 1.00335.20 C ATOM 205 NZ LYS 25 -37.809 -6.337 29.566 1.00335.20 N ATOM 206 C LYS 25 -42.460 -7.984 24.787 1.00335.20 C ATOM 207 O LYS 25 -43.089 -7.440 23.882 1.00335.20 O ATOM 208 N LEU 26 -41.701 -9.080 24.605 1.00646.95 N ATOM 209 CA LEU 26 -41.245 -9.655 23.368 1.00646.95 C ATOM 210 CB LEU 26 -40.151 -10.714 23.562 1.00646.95 C ATOM 211 CG LEU 26 -39.415 -11.064 22.258 1.00646.95 C ATOM 212 CD1 LEU 26 -38.653 -9.845 21.712 1.00646.95 C ATOM 213 CD2 LEU 26 -38.504 -12.282 22.446 1.00646.95 C ATOM 214 C LEU 26 -42.355 -10.211 22.527 1.00646.95 C ATOM 215 O LEU 26 -42.118 -10.647 21.401 1.00646.95 O ATOM 216 N GLY 27 -43.549 -10.418 23.098 1.00382.46 N ATOM 217 CA GLY 27 -44.650 -10.784 22.254 1.00382.46 C ATOM 218 C GLY 27 -45.066 -9.602 21.435 1.00382.46 C ATOM 219 O GLY 27 -45.497 -9.745 20.293 1.00382.46 O ATOM 220 N ALA 28 -45.005 -8.409 22.057 1.00753.25 N ATOM 221 CA ALA 28 -45.316 -7.141 21.465 1.00753.25 C ATOM 222 CB ALA 28 -44.587 -6.889 20.133 1.00753.25 C ATOM 223 C ALA 28 -46.777 -6.995 21.207 1.00753.25 C ATOM 224 O ALA 28 -47.215 -5.970 20.696 1.00753.25 O ATOM 225 N ILE 29 -47.572 -8.014 21.540 1.00486.19 N ATOM 226 CA ILE 29 -49.001 -7.929 21.549 1.00486.19 C ATOM 227 CB ILE 29 -49.689 -8.661 20.449 1.00486.19 C ATOM 228 CG2 ILE 29 -51.206 -8.611 20.700 1.00486.19 C ATOM 229 CG1 ILE 29 -49.277 -8.031 19.113 1.00486.19 C ATOM 230 CD1 ILE 29 -49.695 -8.857 17.906 1.00486.19 C ATOM 231 C ILE 29 -49.222 -8.643 22.819 1.00486.19 C ATOM 232 O ILE 29 -48.250 -9.232 23.285 1.00486.19 O ATOM 233 N TYR 30 -50.432 -8.602 23.417 1.00999.99 N ATOM 234 CA TYR 30 -50.603 -9.197 24.712 1.00999.99 C ATOM 235 CB TYR 30 -50.570 -10.723 24.694 1.00999.99 C ATOM 236 CG TYR 30 -51.943 -11.040 24.237 1.00999.99 C ATOM 237 CD1 TYR 30 -52.318 -10.880 22.923 1.00999.99 C ATOM 238 CD2 TYR 30 -52.862 -11.479 25.153 1.00999.99 C ATOM 239 CE1 TYR 30 -53.605 -11.171 22.539 1.00999.99 C ATOM 240 CE2 TYR 30 -54.147 -11.770 24.774 1.00999.99 C ATOM 241 CZ TYR 30 -54.520 -11.617 23.462 1.00999.99 C ATOM 242 OH TYR 30 -55.843 -11.917 23.074 1.00999.99 O ATOM 243 C TYR 30 -49.543 -8.616 25.561 1.00999.99 C ATOM 244 O TYR 30 -48.798 -9.314 26.246 1.00999.99 O ATOM 245 N ASP 31 -49.453 -7.280 25.471 1.00604.08 N ATOM 246 CA ASP 31 -48.399 -6.559 26.087 1.00604.08 C ATOM 247 CB ASP 31 -48.589 -5.041 26.011 1.00604.08 C ATOM 248 CG ASP 31 -47.311 -4.395 26.512 1.00604.08 C ATOM 249 OD1 ASP 31 -46.304 -5.127 26.704 1.00604.08 O ATOM 250 OD2 ASP 31 -47.328 -3.153 26.709 1.00604.08 O ATOM 251 C ASP 31 -48.329 -6.941 27.523 1.00604.08 C ATOM 252 O ASP 31 -49.329 -6.968 28.239 1.00604.08 O ATOM 253 N LYS 32 -47.101 -7.289 27.946 1.00640.58 N ATOM 254 CA LYS 32 -46.781 -7.587 29.305 1.00640.58 C ATOM 255 CB LYS 32 -47.259 -6.454 30.216 1.00640.58 C ATOM 256 CG LYS 32 -46.710 -5.108 29.751 1.00640.58 C ATOM 257 CD LYS 32 -47.558 -3.924 30.200 1.00640.58 C ATOM 258 CE LYS 32 -47.253 -2.643 29.426 1.00640.58 C ATOM 259 NZ LYS 32 -48.473 -1.809 29.347 1.00640.58 N ATOM 260 C LYS 32 -47.466 -8.844 29.716 1.00640.58 C ATOM 261 O LYS 32 -47.397 -9.237 30.881 1.00640.58 O ATOM 262 N THR 33 -48.095 -9.554 28.760 1.00584.16 N ATOM 263 CA THR 33 -48.683 -10.803 29.146 1.00584.16 C ATOM 264 CB THR 33 -50.186 -10.765 29.121 1.00584.16 C ATOM 265 OG1 THR 33 -50.716 -11.898 29.789 1.00584.16 O ATOM 266 CG2 THR 33 -50.672 -10.737 27.663 1.00584.16 C ATOM 267 C THR 33 -48.223 -11.857 28.190 1.00584.16 C ATOM 268 O THR 33 -48.853 -12.907 28.064 1.00584.16 O ATOM 269 N LYS 34 -47.121 -11.589 27.464 1.00757.95 N ATOM 270 CA LYS 34 -46.561 -12.568 26.589 1.00757.95 C ATOM 271 CB LYS 34 -45.580 -11.939 25.607 1.00757.95 C ATOM 272 CG LYS 34 -46.420 -11.294 24.512 1.00757.95 C ATOM 273 CD LYS 34 -47.203 -12.370 23.753 1.00757.95 C ATOM 274 CE LYS 34 -48.162 -11.888 22.668 1.00757.95 C ATOM 275 NZ LYS 34 -47.413 -11.316 21.530 1.00757.95 N ATOM 276 C LYS 34 -45.964 -13.655 27.420 1.00757.95 C ATOM 277 O LYS 34 -46.134 -14.835 27.119 1.00757.95 O ATOM 278 N LYS 35 -45.251 -13.263 28.496 1.00903.90 N ATOM 279 CA LYS 35 -44.733 -14.163 29.496 1.00903.90 C ATOM 280 CB LYS 35 -45.841 -14.722 30.419 1.00903.90 C ATOM 281 CG LYS 35 -46.962 -15.457 29.667 1.00903.90 C ATOM 282 CD LYS 35 -47.893 -16.306 30.541 1.00903.90 C ATOM 283 CE LYS 35 -49.003 -16.999 29.742 1.00903.90 C ATOM 284 NZ LYS 35 -48.427 -18.061 28.886 1.00903.90 N ATOM 285 C LYS 35 -44.085 -15.310 28.827 1.00903.90 C ATOM 286 O LYS 35 -44.367 -16.441 29.217 1.00903.90 O ATOM 287 N TYR 36 -43.208 -15.079 27.821 1.00861.21 N ATOM 288 CA TYR 36 -42.787 -16.291 27.203 1.00861.21 C ATOM 289 CB TYR 36 -41.973 -16.209 25.916 1.00861.21 C ATOM 290 CG TYR 36 -42.589 -15.438 24.806 1.00861.21 C ATOM 291 CD1 TYR 36 -43.936 -15.434 24.554 1.00861.21 C ATOM 292 CD2 TYR 36 -41.746 -14.765 23.957 1.00861.21 C ATOM 293 CE1 TYR 36 -44.431 -14.743 23.474 1.00861.21 C ATOM 294 CE2 TYR 36 -42.226 -14.075 22.876 1.00861.21 C ATOM 295 CZ TYR 36 -43.573 -14.066 22.639 1.00861.21 C ATOM 296 OH TYR 36 -44.065 -13.370 21.520 1.00861.21 O ATOM 297 C TYR 36 -41.874 -16.965 28.160 1.00861.21 C ATOM 298 O TYR 36 -40.709 -16.609 28.298 1.00861.21 O ATOM 299 N TRP 37 -42.363 -18.032 28.793 1.00565.53 N ATOM 300 CA TRP 37 -41.584 -18.670 29.788 1.00565.53 C ATOM 301 CB TRP 37 -42.380 -19.719 30.572 1.00565.53 C ATOM 302 CG TRP 37 -43.500 -19.173 31.420 1.00565.53 C ATOM 303 CD2 TRP 37 -44.808 -19.757 31.479 1.00565.53 C ATOM 304 CD1 TRP 37 -43.536 -18.077 32.225 1.00565.53 C ATOM 305 NE1 TRP 37 -44.779 -17.944 32.790 1.00565.53 N ATOM 306 CE2 TRP 37 -45.574 -18.969 32.335 1.00565.53 C ATOM 307 CE3 TRP 37 -45.327 -20.860 30.868 1.00565.53 C ATOM 308 CZ2 TRP 37 -46.877 -19.274 32.592 1.00565.53 C ATOM 309 CZ3 TRP 37 -46.642 -21.165 31.127 1.00565.53 C ATOM 310 CH2 TRP 37 -47.401 -20.386 31.972 1.00565.53 C ATOM 311 C TRP 37 -40.515 -19.403 29.077 1.00565.53 C ATOM 312 O TRP 37 -40.772 -20.145 28.132 1.00565.53 O ATOM 313 N VAL 38 -39.272 -19.223 29.535 1.00414.38 N ATOM 314 CA VAL 38 -38.207 -19.855 28.838 1.00414.38 C ATOM 315 CB VAL 38 -36.916 -19.118 28.988 1.00414.38 C ATOM 316 CG1 VAL 38 -36.282 -19.516 30.328 1.00414.38 C ATOM 317 CG2 VAL 38 -36.044 -19.396 27.762 1.00414.38 C ATOM 318 C VAL 38 -37.994 -21.228 29.381 1.00414.38 C ATOM 319 O VAL 38 -38.172 -21.481 30.570 1.00414.38 O ATOM 320 N TYR 39 -37.724 -22.186 28.479 1.00309.26 N ATOM 321 CA TYR 39 -37.183 -23.439 28.909 1.00309.26 C ATOM 322 CB TYR 39 -38.133 -24.648 28.863 1.00309.26 C ATOM 323 CG TYR 39 -37.352 -25.786 29.437 1.00309.26 C ATOM 324 CD1 TYR 39 -37.052 -25.808 30.783 1.00309.26 C ATOM 325 CD2 TYR 39 -36.930 -26.830 28.649 1.00309.26 C ATOM 326 CE1 TYR 39 -36.334 -26.844 31.331 1.00309.26 C ATOM 327 CE2 TYR 39 -36.213 -27.871 29.192 1.00309.26 C ATOM 328 CZ TYR 39 -35.912 -27.878 30.533 1.00309.26 C ATOM 329 OH TYR 39 -35.174 -28.945 31.089 1.00309.26 O ATOM 330 C TYR 39 -36.076 -23.662 27.933 1.00309.26 C ATOM 331 O TYR 39 -36.296 -24.102 26.804 1.00309.26 O ATOM 332 N GLN 40 -34.837 -23.400 28.373 1.00387.65 N ATOM 333 CA GLN 40 -33.700 -23.491 27.511 1.00387.65 C ATOM 334 CB GLN 40 -33.462 -24.911 26.973 1.00387.65 C ATOM 335 CG GLN 40 -33.230 -25.929 28.089 1.00387.65 C ATOM 336 CD GLN 40 -32.046 -25.457 28.925 1.00387.65 C ATOM 337 OE1 GLN 40 -31.325 -24.535 28.550 1.00387.65 O ATOM 338 NE2 GLN 40 -31.841 -26.109 30.100 1.00387.65 N ATOM 339 C GLN 40 -33.847 -22.555 26.350 1.00387.65 C ATOM 340 O GLN 40 -33.574 -22.920 25.208 1.00387.65 O ATOM 341 N GLY 41 -34.276 -21.302 26.613 1.00374.00 N ATOM 342 CA GLY 41 -34.339 -20.326 25.560 1.00374.00 C ATOM 343 C GLY 41 -35.504 -20.605 24.669 1.00374.00 C ATOM 344 O GLY 41 -35.399 -20.470 23.451 1.00374.00 O ATOM 345 N LYS 42 -36.646 -21.021 25.245 1.00277.22 N ATOM 346 CA LYS 42 -37.772 -21.290 24.399 1.00277.22 C ATOM 347 CB LYS 42 -38.133 -22.783 24.364 1.00277.22 C ATOM 348 CG LYS 42 -36.992 -23.650 23.826 1.00277.22 C ATOM 349 CD LYS 42 -37.202 -25.153 24.028 1.00277.22 C ATOM 350 CE LYS 42 -36.035 -25.994 23.510 1.00277.22 C ATOM 351 NZ LYS 42 -35.790 -25.695 22.084 1.00277.22 N ATOM 352 C LYS 42 -38.939 -20.529 24.956 1.00277.22 C ATOM 353 O LYS 42 -39.499 -20.881 25.994 1.00277.22 O ATOM 354 N PRO 43 -39.305 -19.484 24.262 1.00317.22 N ATOM 355 CA PRO 43 -40.367 -18.607 24.680 1.00317.22 C ATOM 356 CD PRO 43 -38.354 -18.829 23.377 1.00317.22 C ATOM 357 CB PRO 43 -40.287 -17.414 23.725 1.00317.22 C ATOM 358 CG PRO 43 -38.811 -17.368 23.292 1.00317.22 C ATOM 359 C PRO 43 -41.729 -19.244 24.702 1.00317.22 C ATOM 360 O PRO 43 -42.215 -19.635 23.642 1.00317.22 O ATOM 361 N VAL 44 -42.408 -19.307 25.867 1.00349.75 N ATOM 362 CA VAL 44 -43.743 -19.835 25.801 1.00349.75 C ATOM 363 CB VAL 44 -44.092 -20.819 26.907 1.00349.75 C ATOM 364 CG1 VAL 44 -44.150 -20.134 28.266 1.00349.75 C ATOM 365 CG2 VAL 44 -45.413 -21.520 26.586 1.00349.75 C ATOM 366 C VAL 44 -44.681 -18.660 25.779 1.00349.75 C ATOM 367 O VAL 44 -44.899 -17.976 26.777 1.00349.75 O ATOM 368 N MET 45 -45.270 -18.432 24.590 1.00329.16 N ATOM 369 CA MET 45 -46.128 -17.353 24.181 1.00329.16 C ATOM 370 CB MET 45 -46.526 -17.467 22.693 1.00329.16 C ATOM 371 CG MET 45 -45.453 -17.930 21.694 1.00329.16 C ATOM 372 SD MET 45 -44.199 -16.730 21.159 1.00329.16 S ATOM 373 CE MET 45 -43.705 -17.618 19.656 1.00329.16 C ATOM 374 C MET 45 -47.455 -17.525 24.856 1.00329.16 C ATOM 375 O MET 45 -47.743 -18.564 25.447 1.00329.16 O ATOM 376 N PRO 46 -48.258 -16.493 24.784 1.00449.81 N ATOM 377 CA PRO 46 -49.618 -16.573 25.246 1.00449.81 C ATOM 378 CD PRO 46 -47.755 -15.140 24.847 1.00449.81 C ATOM 379 CB PRO 46 -50.103 -15.144 25.446 1.00449.81 C ATOM 380 CG PRO 46 -48.812 -14.347 25.634 1.00449.81 C ATOM 381 C PRO 46 -50.354 -17.213 24.118 1.00449.81 C ATOM 382 O PRO 46 -49.787 -17.338 23.035 1.00449.81 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 55.15 61.8 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 36.49 79.4 34 100.0 34 ARMSMC SURFACE . . . . . . . . 51.78 60.7 56 100.0 56 ARMSMC BURIED . . . . . . . . 68.69 66.7 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.00 50.0 32 100.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 78.34 55.2 29 100.0 29 ARMSSC1 SECONDARY STRUCTURE . . 75.74 52.9 17 100.0 17 ARMSSC1 SURFACE . . . . . . . . 83.11 48.1 27 100.0 27 ARMSSC1 BURIED . . . . . . . . 60.50 60.0 5 100.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.55 52.0 25 100.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 66.43 47.6 21 100.0 21 ARMSSC2 SECONDARY STRUCTURE . . 41.57 69.2 13 100.0 13 ARMSSC2 SURFACE . . . . . . . . 63.92 54.5 22 100.0 22 ARMSSC2 BURIED . . . . . . . . 76.42 33.3 3 100.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.01 75.0 8 100.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 68.41 71.4 7 100.0 7 ARMSSC3 SECONDARY STRUCTURE . . 106.02 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 64.01 75.0 8 100.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.22 16.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 95.22 16.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 83.63 50.0 2 100.0 2 ARMSSC4 SURFACE . . . . . . . . 95.22 16.7 6 100.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.15 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.15 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.2043 CRMSCA SECONDARY STRUCTURE . . 5.87 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.47 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.35 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.18 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 5.99 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.42 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.89 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.79 156 100.0 156 CRMSSC RELIABLE SIDE CHAINS . 8.73 136 100.0 136 CRMSSC SECONDARY STRUCTURE . . 8.60 84 100.0 84 CRMSSC SURFACE . . . . . . . . 9.12 127 100.0 127 CRMSSC BURIED . . . . . . . . 7.14 29 100.0 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.02 296 100.0 296 CRMSALL SECONDARY STRUCTURE . . 7.51 152 100.0 152 CRMSALL SURFACE . . . . . . . . 8.31 243 100.0 243 CRMSALL BURIED . . . . . . . . 6.54 53 100.0 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 468.387 0.969 0.970 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 468.528 0.973 0.974 17 100.0 17 ERRCA SURFACE . . . . . . . . 455.909 0.967 0.968 29 100.0 29 ERRCA BURIED . . . . . . . . 528.699 0.980 0.980 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 469.529 0.970 0.970 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 468.448 0.973 0.973 85 100.0 85 ERRMC SURFACE . . . . . . . . 457.195 0.968 0.968 143 100.0 143 ERRMC BURIED . . . . . . . . 528.323 0.978 0.979 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 495.632 0.964 0.965 156 100.0 156 ERRSC RELIABLE SIDE CHAINS . 510.156 0.965 0.966 136 100.0 136 ERRSC SECONDARY STRUCTURE . . 512.292 0.966 0.966 84 100.0 84 ERRSC SURFACE . . . . . . . . 490.537 0.961 0.962 127 100.0 127 ERRSC BURIED . . . . . . . . 517.947 0.974 0.974 29 100.0 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 482.803 0.967 0.967 296 100.0 296 ERRALL SECONDARY STRUCTURE . . 492.708 0.969 0.970 152 100.0 152 ERRALL SURFACE . . . . . . . . 474.099 0.965 0.965 243 100.0 243 ERRALL BURIED . . . . . . . . 522.710 0.976 0.977 53 100.0 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 13 30 35 35 DISTCA CA (P) 0.00 0.00 2.86 37.14 85.71 35 DISTCA CA (RMS) 0.00 0.00 2.98 4.12 5.93 DISTCA ALL (N) 0 2 9 88 237 296 296 DISTALL ALL (P) 0.00 0.68 3.04 29.73 80.07 296 DISTALL ALL (RMS) 0.00 1.75 2.53 4.06 6.20 DISTALL END of the results output