####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 35 ( 241), selected 35 , name T0548TS481_1-D1 # Molecule2: number of CA atoms 35 ( 296), selected 35 , name T0548-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0548TS481_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 15 - 45 4.84 7.29 LONGEST_CONTINUOUS_SEGMENT: 31 16 - 46 4.78 7.61 LCS_AVERAGE: 85.63 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 28 - 45 1.85 8.71 LONGEST_CONTINUOUS_SEGMENT: 18 29 - 46 1.82 9.45 LCS_AVERAGE: 46.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 29 - 44 0.93 8.59 LCS_AVERAGE: 38.37 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 35 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 12 H 12 4 4 19 3 4 5 5 6 8 10 11 16 16 16 16 16 17 17 17 17 18 18 21 LCS_GDT F 13 F 13 4 15 19 3 4 5 5 13 14 15 15 16 16 16 16 16 17 18 18 23 23 26 30 LCS_GDT H 14 H 14 14 15 19 5 13 14 14 14 14 15 15 16 16 17 20 23 25 25 27 29 32 32 32 LCS_GDT Y 15 Y 15 14 15 31 7 13 14 14 14 14 15 15 16 16 18 22 24 25 27 30 31 32 32 32 LCS_GDT T 16 T 16 14 15 31 7 13 14 14 14 14 15 15 16 17 20 22 24 27 29 30 31 32 32 32 LCS_GDT V 17 V 17 14 15 31 7 13 14 14 14 14 15 15 16 18 21 27 28 28 29 30 31 32 32 32 LCS_GDT T 18 T 18 14 15 31 5 13 14 14 14 14 15 15 17 20 26 27 28 28 29 30 31 32 32 32 LCS_GDT D 19 D 19 14 15 31 4 13 14 14 14 14 15 15 17 21 26 27 28 28 29 30 31 32 32 32 LCS_GDT I 20 I 20 14 15 31 4 13 14 14 14 14 15 15 17 21 26 27 28 28 29 30 31 32 32 32 LCS_GDT K 21 K 21 14 15 31 7 13 14 16 18 19 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT D 22 D 22 14 15 31 7 13 14 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT L 23 L 23 14 15 31 7 13 14 14 14 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT T 24 T 24 14 15 31 7 13 14 14 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT K 25 K 25 14 15 31 7 13 14 14 14 19 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT L 26 L 26 14 15 31 7 13 14 14 14 16 21 22 24 24 25 27 28 28 29 30 31 32 32 32 LCS_GDT G 27 G 27 14 15 31 7 13 14 14 14 14 15 15 16 19 24 25 26 26 27 29 31 32 32 32 LCS_GDT A 28 A 28 3 18 31 3 3 3 3 5 7 14 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT I 29 I 29 16 18 31 4 11 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT Y 30 Y 30 16 18 31 6 10 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT D 31 D 31 16 18 31 4 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT K 32 K 32 16 18 31 5 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT T 33 T 33 16 18 31 5 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT K 34 K 34 16 18 31 4 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT K 35 K 35 16 18 31 5 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT Y 36 Y 36 16 18 31 5 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT W 37 W 37 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT V 38 V 38 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT Y 39 Y 39 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT Q 40 Q 40 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT G 41 G 41 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT K 42 K 42 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT P 43 P 43 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT V 44 V 44 16 18 31 8 12 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT M 45 M 45 4 18 31 0 4 4 11 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 LCS_GDT P 46 P 46 3 18 31 2 4 4 4 5 5 13 17 23 23 24 25 26 26 26 28 28 29 30 31 LCS_AVERAGE LCS_A: 56.87 ( 38.37 46.61 85.63 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 13 15 17 18 20 21 22 24 24 26 27 28 28 29 30 31 32 32 32 GDT PERCENT_AT 22.86 37.14 42.86 48.57 51.43 57.14 60.00 62.86 68.57 68.57 74.29 77.14 80.00 80.00 82.86 85.71 88.57 91.43 91.43 91.43 GDT RMS_LOCAL 0.23 0.58 0.86 1.06 1.20 1.78 1.88 2.04 2.47 2.47 3.42 3.73 3.87 3.87 4.26 4.61 4.84 5.24 5.24 5.24 GDT RMS_ALL_AT 8.43 12.16 8.53 8.34 8.26 8.81 8.59 8.66 8.81 8.81 7.84 7.63 7.66 7.66 7.44 7.29 7.29 7.14 7.14 7.14 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 12 H 12 28.259 5 0.109 0.153 29.310 0.000 0.000 LGA F 13 F 13 21.622 6 0.061 0.084 24.410 0.000 0.000 LGA H 14 H 14 17.772 5 0.616 0.574 18.405 0.000 0.000 LGA Y 15 Y 15 14.441 7 0.045 0.056 15.657 0.000 0.000 LGA T 16 T 16 13.988 2 0.030 0.055 14.490 0.000 0.000 LGA V 17 V 17 11.224 2 0.015 0.015 12.640 1.310 0.748 LGA T 18 T 18 10.030 2 0.041 0.048 11.601 2.500 1.429 LGA D 19 D 19 8.988 3 0.070 0.073 10.607 6.905 3.452 LGA I 20 I 20 7.296 3 0.021 0.021 8.421 19.524 10.357 LGA K 21 K 21 3.262 4 0.119 0.127 4.850 56.905 29.418 LGA D 22 D 22 2.316 3 0.034 0.040 3.354 69.405 40.952 LGA L 23 L 23 3.452 3 0.044 0.045 5.049 47.381 26.964 LGA T 24 T 24 4.057 2 0.010 0.012 5.378 37.500 27.619 LGA K 25 K 25 3.995 4 0.086 0.088 6.866 35.000 20.370 LGA L 26 L 26 5.384 3 0.042 0.045 8.072 20.357 14.821 LGA G 27 G 27 8.599 0 0.293 0.293 8.599 5.714 5.714 LGA A 28 A 28 5.685 0 0.682 0.621 6.558 34.048 29.905 LGA I 29 I 29 1.117 3 0.674 0.613 3.592 79.524 45.179 LGA Y 30 Y 30 1.818 7 0.029 0.034 3.080 79.405 30.635 LGA D 31 D 31 0.617 3 0.157 0.191 1.563 90.476 54.345 LGA K 32 K 32 0.882 4 0.146 0.151 1.332 85.952 47.249 LGA T 33 T 33 1.064 2 0.083 0.088 1.455 83.690 59.456 LGA K 34 K 34 0.936 4 0.022 0.021 1.111 88.214 49.259 LGA K 35 K 35 1.251 4 0.273 0.259 2.025 88.214 46.402 LGA Y 36 Y 36 0.936 7 0.040 0.037 1.791 90.476 36.230 LGA W 37 W 37 1.223 9 0.055 0.070 1.236 81.429 29.082 LGA V 38 V 38 1.399 2 0.016 0.021 1.687 79.286 55.714 LGA Y 39 Y 39 1.358 7 0.044 0.052 1.360 81.429 33.929 LGA Q 40 Q 40 1.437 4 0.035 0.034 1.489 81.429 45.238 LGA G 41 G 41 1.348 0 0.048 0.048 1.348 81.429 81.429 LGA K 42 K 42 1.232 4 0.065 0.083 1.546 79.286 44.286 LGA P 43 P 43 1.212 2 0.065 0.059 1.228 81.429 58.163 LGA V 44 V 44 1.050 2 0.635 0.578 2.416 79.524 57.075 LGA M 45 M 45 2.801 3 0.089 0.114 6.762 41.667 24.107 LGA P 46 P 46 7.220 2 0.067 0.075 9.008 11.429 8.435 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 35 140 140 100.00 296 173 58.45 35 SUMMARY(RMSD_GDC): 6.962 6.913 6.946 49.167 29.085 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 35 35 4.0 22 2.04 58.571 57.016 1.028 LGA_LOCAL RMSD: 2.041 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.661 Number of assigned atoms: 35 Std_ASGN_ATOMS RMSD: 6.962 Standard rmsd on all 35 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.760146 * X + 0.037034 * Y + -0.648696 * Z + -43.393131 Y_new = -0.542802 * X + -0.584946 * Y + 0.602664 * Z + 7.689598 Z_new = -0.357132 * X + 0.810226 * Y + 0.464747 * Z + 37.385071 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.521482 0.365196 1.050014 [DEG: -144.4703 20.9242 60.1614 ] ZXZ: -2.319426 1.087448 -0.415161 [DEG: -132.8933 62.3062 -23.7870 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0548TS481_1-D1 REMARK 2: T0548-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0548TS481_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 35 35 4.0 22 2.04 57.016 6.96 REMARK ---------------------------------------------------------- MOLECULE T0548TS481_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0548 REMARK MODEL 1 REMARK PARENT N/A ATOM 77 N HIS 12 -27.327 -5.306 40.822 1.00 0.00 N ATOM 78 CA HIS 12 -26.631 -5.871 39.671 1.00 0.00 C ATOM 79 C HIS 12 -27.368 -7.087 39.125 1.00 0.00 C ATOM 80 O HIS 12 -27.575 -8.071 39.837 1.00 0.00 O ATOM 81 CB HIS 12 -25.194 -6.252 40.041 1.00 0.00 C ATOM 82 CEN HIS 12 -23.890 -5.684 39.966 1.00 0.00 C ATOM 83 H HIS 12 -26.809 -5.130 41.671 1.00 0.00 H ATOM 84 N PHE 13 -27.763 -7.014 37.858 1.00 0.00 N ATOM 85 CA PHE 13 -28.458 -8.118 37.208 1.00 0.00 C ATOM 86 C PHE 13 -27.904 -8.371 35.812 1.00 0.00 C ATOM 87 O PHE 13 -27.310 -7.484 35.198 1.00 0.00 O ATOM 88 CB PHE 13 -29.960 -7.834 37.134 1.00 0.00 C ATOM 89 CEN PHE 13 -31.282 -8.213 37.932 1.00 0.00 C ATOM 90 H PHE 13 -27.577 -6.172 37.333 1.00 0.00 H ATOM 91 N HIS 14 -28.102 -9.587 35.314 1.00 0.00 N ATOM 92 CA HIS 14 -27.605 -9.967 33.998 1.00 0.00 C ATOM 93 C HIS 14 -28.353 -9.231 32.893 1.00 0.00 C ATOM 94 O HIS 14 -27.769 -8.862 31.874 1.00 0.00 O ATOM 95 CB HIS 14 -27.720 -11.481 33.790 1.00 0.00 C ATOM 96 CEN HIS 14 -26.899 -12.637 33.923 1.00 0.00 C ATOM 97 H HIS 14 -28.611 -10.267 35.862 1.00 0.00 H ATOM 98 N TYR 15 -29.648 -9.022 33.101 1.00 0.00 N ATOM 99 CA TYR 15 -30.501 -8.427 32.080 1.00 0.00 C ATOM 100 C TYR 15 -30.851 -6.984 32.426 1.00 0.00 C ATOM 101 O TYR 15 -30.769 -6.577 33.585 1.00 0.00 O ATOM 102 CB TYR 15 -31.780 -9.249 31.904 1.00 0.00 C ATOM 103 CEN TYR 15 -32.470 -10.458 30.840 1.00 0.00 C ATOM 104 H TYR 15 -30.052 -9.282 33.989 1.00 0.00 H ATOM 105 N THR 16 -31.241 -6.217 31.414 1.00 0.00 N ATOM 106 CA THR 16 -31.647 -4.831 31.618 1.00 0.00 C ATOM 107 C THR 16 -33.154 -4.720 31.800 1.00 0.00 C ATOM 108 O THR 16 -33.873 -5.716 31.730 1.00 0.00 O ATOM 109 CB THR 16 -31.215 -3.938 30.440 1.00 0.00 C ATOM 110 CEN THR 16 -30.806 -3.706 30.093 1.00 0.00 C ATOM 111 H THR 16 -31.256 -6.602 30.482 1.00 0.00 H ATOM 112 N VAL 17 -33.629 -3.501 32.037 1.00 0.00 N ATOM 113 CA VAL 17 -35.045 -3.266 32.294 1.00 0.00 C ATOM 114 C VAL 17 -35.896 -3.660 31.095 1.00 0.00 C ATOM 115 O VAL 17 -36.889 -4.374 31.233 1.00 0.00 O ATOM 116 CB VAL 17 -35.318 -1.791 32.645 1.00 0.00 C ATOM 117 CEN VAL 17 -35.492 -1.366 33.158 1.00 0.00 C ATOM 118 H VAL 17 -32.992 -2.716 32.037 1.00 0.00 H ATOM 119 N THR 18 -35.501 -3.191 29.916 1.00 0.00 N ATOM 120 CA THR 18 -36.279 -3.414 28.703 1.00 0.00 C ATOM 121 C THR 18 -36.333 -4.893 28.347 1.00 0.00 C ATOM 122 O THR 18 -37.377 -5.407 27.944 1.00 0.00 O ATOM 123 CB THR 18 -35.702 -2.630 27.510 1.00 0.00 C ATOM 124 CEN THR 18 -35.547 -2.130 27.249 1.00 0.00 C ATOM 125 H THR 18 -34.640 -2.666 29.858 1.00 0.00 H ATOM 126 N ASP 19 -35.203 -5.575 28.499 1.00 0.00 N ATOM 127 CA ASP 19 -35.116 -6.995 28.180 1.00 0.00 C ATOM 128 C ASP 19 -35.886 -7.835 29.191 1.00 0.00 C ATOM 129 O ASP 19 -36.525 -8.825 28.832 1.00 0.00 O ATOM 130 CB ASP 19 -33.654 -7.444 28.129 1.00 0.00 C ATOM 131 CEN ASP 19 -32.908 -7.613 27.456 1.00 0.00 C ATOM 132 H ASP 19 -34.383 -5.098 28.845 1.00 0.00 H ATOM 133 N ILE 20 -35.823 -7.435 30.456 1.00 0.00 N ATOM 134 CA ILE 20 -36.559 -8.118 31.514 1.00 0.00 C ATOM 135 C ILE 20 -38.054 -8.137 31.222 1.00 0.00 C ATOM 136 O ILE 20 -38.713 -9.165 31.374 1.00 0.00 O ATOM 137 CB ILE 20 -36.321 -7.459 32.884 1.00 0.00 C ATOM 138 CEN ILE 20 -35.666 -7.422 33.755 1.00 0.00 C ATOM 139 H ILE 20 -35.252 -6.636 30.691 1.00 0.00 H ATOM 140 N LYS 21 -38.583 -6.993 30.802 1.00 0.00 N ATOM 141 CA LYS 21 -40.007 -6.868 30.513 1.00 0.00 C ATOM 142 C LYS 21 -40.408 -7.742 29.333 1.00 0.00 C ATOM 143 O LYS 21 -41.573 -8.115 29.191 1.00 0.00 O ATOM 144 CB LYS 21 -40.371 -5.409 30.236 1.00 0.00 C ATOM 145 CEN LYS 21 -41.251 -3.605 30.903 1.00 0.00 C ATOM 146 H LYS 21 -37.985 -6.189 30.679 1.00 0.00 H ATOM 147 N ASP 22 -39.437 -8.066 28.485 1.00 0.00 N ATOM 148 CA ASP 22 -39.649 -9.020 27.404 1.00 0.00 C ATOM 149 C ASP 22 -39.923 -10.417 27.947 1.00 0.00 C ATOM 150 O ASP 22 -40.767 -11.144 27.423 1.00 0.00 O ATOM 151 CB ASP 22 -38.439 -9.048 26.467 1.00 0.00 C ATOM 152 CEN ASP 22 -38.125 -8.658 25.580 1.00 0.00 C ATOM 153 H ASP 22 -38.527 -7.640 28.593 1.00 0.00 H ATOM 154 N LEU 23 -39.204 -10.786 29.003 1.00 0.00 N ATOM 155 CA LEU 23 -39.389 -12.086 29.638 1.00 0.00 C ATOM 156 C LEU 23 -40.773 -12.202 30.263 1.00 0.00 C ATOM 157 O LEU 23 -41.415 -13.248 30.182 1.00 0.00 O ATOM 158 CB LEU 23 -38.303 -12.317 30.697 1.00 0.00 C ATOM 159 CEN LEU 23 -37.030 -13.183 30.718 1.00 0.00 C ATOM 160 H LEU 23 -38.512 -10.151 29.373 1.00 0.00 H ATOM 161 N THR 24 -41.227 -11.119 30.886 1.00 0.00 N ATOM 162 CA THR 24 -42.551 -11.086 31.497 1.00 0.00 C ATOM 163 C THR 24 -43.646 -11.218 30.446 1.00 0.00 C ATOM 164 O THR 24 -44.666 -11.867 30.675 1.00 0.00 O ATOM 165 CB THR 24 -42.773 -9.788 32.296 1.00 0.00 C ATOM 166 CEN THR 24 -42.629 -9.418 32.723 1.00 0.00 C ATOM 167 H THR 24 -40.640 -10.299 30.938 1.00 0.00 H ATOM 168 N LYS 25 -43.428 -10.596 29.291 1.00 0.00 N ATOM 169 CA LYS 25 -44.365 -10.695 28.179 1.00 0.00 C ATOM 170 C LYS 25 -44.496 -12.134 27.695 1.00 0.00 C ATOM 171 O LYS 25 -45.587 -12.586 27.348 1.00 0.00 O ATOM 172 CB LYS 25 -43.928 -9.791 27.027 1.00 0.00 C ATOM 173 CEN LYS 25 -44.189 -7.999 25.932 1.00 0.00 C ATOM 174 H LYS 25 -42.592 -10.040 29.182 1.00 0.00 H ATOM 175 N LEU 26 -43.376 -12.849 27.675 1.00 0.00 N ATOM 176 CA LEU 26 -43.366 -14.245 27.253 1.00 0.00 C ATOM 177 C LEU 26 -44.147 -15.120 28.224 1.00 0.00 C ATOM 178 O LEU 26 -44.709 -16.145 27.837 1.00 0.00 O ATOM 179 CB LEU 26 -41.924 -14.749 27.122 1.00 0.00 C ATOM 180 CEN LEU 26 -41.018 -15.022 25.907 1.00 0.00 C ATOM 181 H LEU 26 -42.510 -12.415 27.959 1.00 0.00 H ATOM 182 N GLY 27 -44.180 -14.709 29.487 1.00 0.00 N ATOM 183 CA GLY 27 -44.914 -15.442 30.512 1.00 0.00 C ATOM 184 C GLY 27 -46.396 -15.535 30.168 1.00 0.00 C ATOM 185 O GLY 27 -47.028 -16.570 30.380 1.00 0.00 O ATOM 186 CEN GLY 27 -44.914 -15.442 30.512 1.00 0.00 C ATOM 187 H GLY 27 -43.683 -13.869 29.744 1.00 0.00 H ATOM 188 N ALA 28 -46.943 -14.448 29.636 1.00 0.00 N ATOM 189 CA ALA 28 -48.353 -14.403 29.267 1.00 0.00 C ATOM 190 C ALA 28 -48.639 -15.303 28.072 1.00 0.00 C ATOM 191 O ALA 28 -49.795 -15.537 27.721 1.00 0.00 O ATOM 192 CB ALA 28 -48.777 -12.972 28.971 1.00 0.00 C ATOM 193 CEN ALA 28 -48.778 -12.973 28.970 1.00 0.00 C ATOM 194 H ALA 28 -46.368 -13.632 29.483 1.00 0.00 H ATOM 195 N ILE 29 -47.577 -15.805 27.448 1.00 0.00 N ATOM 196 CA ILE 29 -47.713 -16.710 26.313 1.00 0.00 C ATOM 197 C ILE 29 -47.976 -18.137 26.775 1.00 0.00 C ATOM 198 O ILE 29 -48.384 -18.989 25.986 1.00 0.00 O ATOM 199 CB ILE 29 -46.457 -16.691 25.423 1.00 0.00 C ATOM 200 CEN ILE 29 -45.956 -16.186 24.597 1.00 0.00 C ATOM 201 H ILE 29 -46.654 -15.554 27.770 1.00 0.00 H ATOM 202 N TYR 30 -47.741 -18.392 28.058 1.00 0.00 N ATOM 203 CA TYR 30 -47.956 -19.716 28.628 1.00 0.00 C ATOM 204 C TYR 30 -49.317 -19.809 29.307 1.00 0.00 C ATOM 205 O TYR 30 -49.689 -18.938 30.094 1.00 0.00 O ATOM 206 CB TYR 30 -46.847 -20.057 29.625 1.00 0.00 C ATOM 207 CEN TYR 30 -45.360 -20.977 29.726 1.00 0.00 C ATOM 208 H TYR 30 -47.403 -17.649 28.652 1.00 0.00 H ATOM 209 N ASP 31 -50.055 -20.869 28.999 1.00 0.00 N ATOM 210 CA ASP 31 -51.364 -21.093 29.603 1.00 0.00 C ATOM 211 C ASP 31 -51.246 -21.308 31.106 1.00 0.00 C ATOM 212 O ASP 31 -50.361 -22.025 31.573 1.00 0.00 O ATOM 213 CB ASP 31 -52.056 -22.292 28.952 1.00 0.00 C ATOM 214 CEN ASP 31 -52.749 -22.504 28.235 1.00 0.00 C ATOM 215 H ASP 31 -49.702 -21.537 28.329 1.00 0.00 H ATOM 216 N LYS 32 -52.146 -20.685 31.860 1.00 0.00 N ATOM 217 CA LYS 32 -52.146 -20.810 33.313 1.00 0.00 C ATOM 218 C LYS 32 -52.496 -22.228 33.744 1.00 0.00 C ATOM 219 O LYS 32 -52.096 -22.677 34.819 1.00 0.00 O ATOM 220 CB LYS 32 -53.126 -19.815 33.935 1.00 0.00 C ATOM 221 CEN LYS 32 -53.448 -18.000 34.975 1.00 0.00 C ATOM 222 H LYS 32 -52.846 -20.110 31.415 1.00 0.00 H ATOM 223 N THR 33 -53.243 -22.931 32.899 1.00 0.00 N ATOM 224 CA THR 33 -53.687 -24.284 33.213 1.00 0.00 C ATOM 225 C THR 33 -52.560 -25.291 33.025 1.00 0.00 C ATOM 226 O THR 33 -52.372 -26.187 33.847 1.00 0.00 O ATOM 227 CB THR 33 -54.885 -24.701 32.339 1.00 0.00 C ATOM 228 CEN THR 33 -55.433 -24.627 32.150 1.00 0.00 C ATOM 229 H THR 33 -53.510 -22.517 32.018 1.00 0.00 H ATOM 230 N LYS 34 -51.811 -25.138 31.938 1.00 0.00 N ATOM 231 CA LYS 34 -50.714 -26.048 31.630 1.00 0.00 C ATOM 232 C LYS 34 -49.394 -25.525 32.182 1.00 0.00 C ATOM 233 O LYS 34 -48.398 -26.246 32.218 1.00 0.00 O ATOM 234 CB LYS 34 -50.604 -26.261 30.119 1.00 0.00 C ATOM 235 CEN LYS 34 -50.936 -27.502 28.437 1.00 0.00 C ATOM 236 H LYS 34 -52.007 -24.372 31.310 1.00 0.00 H ATOM 237 N LYS 35 -49.394 -24.268 32.611 1.00 0.00 N ATOM 238 CA LYS 35 -48.191 -23.641 33.145 1.00 0.00 C ATOM 239 C LYS 35 -47.037 -23.729 32.155 1.00 0.00 C ATOM 240 O LYS 35 -45.913 -24.063 32.526 1.00 0.00 O ATOM 241 CB LYS 35 -47.794 -24.288 34.473 1.00 0.00 C ATOM 242 CEN LYS 35 -47.719 -24.186 36.585 1.00 0.00 C ATOM 243 H LYS 35 -50.250 -23.733 32.566 1.00 0.00 H ATOM 244 N TYR 36 -47.324 -23.428 30.893 1.00 0.00 N ATOM 245 CA TYR 36 -46.312 -23.483 29.844 1.00 0.00 C ATOM 246 C TYR 36 -46.418 -22.281 28.913 1.00 0.00 C ATOM 247 O TYR 36 -47.467 -21.643 28.824 1.00 0.00 O ATOM 248 CB TYR 36 -46.442 -24.780 29.042 1.00 0.00 C ATOM 249 CEN TYR 36 -45.711 -26.368 28.919 1.00 0.00 C ATOM 250 H TYR 36 -48.266 -23.154 30.654 1.00 0.00 H ATOM 251 N TRP 37 -45.325 -21.976 28.222 1.00 0.00 N ATOM 252 CA TRP 37 -45.332 -20.942 27.195 1.00 0.00 C ATOM 253 C TRP 37 -45.112 -21.538 25.811 1.00 0.00 C ATOM 254 O TRP 37 -44.275 -22.423 25.631 1.00 0.00 O ATOM 255 CB TRP 37 -44.259 -19.891 27.490 1.00 0.00 C ATOM 256 CEN TRP 37 -44.051 -18.190 27.861 1.00 0.00 C ATOM 257 H TRP 37 -44.467 -22.475 28.413 1.00 0.00 H ATOM 258 N VAL 38 -45.868 -21.047 24.834 1.00 0.00 N ATOM 259 CA VAL 38 -45.754 -21.527 23.462 1.00 0.00 C ATOM 260 C VAL 38 -45.759 -20.369 22.473 1.00 0.00 C ATOM 261 O VAL 38 -46.534 -19.423 22.612 1.00 0.00 O ATOM 262 CB VAL 38 -46.894 -22.499 23.107 1.00 0.00 C ATOM 263 CEN VAL 38 -47.040 -23.160 22.976 1.00 0.00 C ATOM 264 H VAL 38 -46.540 -20.325 25.049 1.00 0.00 H ATOM 265 N TYR 39 -44.889 -20.450 21.471 1.00 0.00 N ATOM 266 CA TYR 39 -44.793 -19.409 20.454 1.00 0.00 C ATOM 267 C TYR 39 -44.641 -20.011 19.063 1.00 0.00 C ATOM 268 O TYR 39 -43.741 -20.816 18.819 1.00 0.00 O ATOM 269 CB TYR 39 -43.619 -18.476 20.754 1.00 0.00 C ATOM 270 CEN TYR 39 -43.291 -16.904 21.454 1.00 0.00 C ATOM 271 H TYR 39 -44.280 -21.254 21.412 1.00 0.00 H ATOM 272 N GLN 40 -45.525 -19.617 18.152 1.00 0.00 N ATOM 273 CA GLN 40 -45.529 -20.165 16.802 1.00 0.00 C ATOM 274 C GLN 40 -45.795 -21.664 16.816 1.00 0.00 C ATOM 275 O GLN 40 -45.272 -22.404 15.984 1.00 0.00 O ATOM 276 CB GLN 40 -44.196 -19.882 16.104 1.00 0.00 C ATOM 277 CEN GLN 40 -43.384 -18.844 14.959 1.00 0.00 C ATOM 278 H GLN 40 -46.211 -18.920 18.404 1.00 0.00 H ATOM 279 N GLY 41 -46.611 -22.107 17.767 1.00 0.00 N ATOM 280 CA GLY 41 -46.987 -23.512 17.861 1.00 0.00 C ATOM 281 C GLY 41 -45.895 -24.330 18.537 1.00 0.00 C ATOM 282 O GLY 41 -46.016 -25.547 18.679 1.00 0.00 O ATOM 283 CEN GLY 41 -46.987 -23.512 17.861 1.00 0.00 C ATOM 284 H GLY 41 -46.980 -21.452 18.442 1.00 0.00 H ATOM 285 N LYS 42 -44.829 -23.656 18.954 1.00 0.00 N ATOM 286 CA LYS 42 -43.702 -24.323 19.594 1.00 0.00 C ATOM 287 C LYS 42 -43.472 -23.790 21.002 1.00 0.00 C ATOM 288 O LYS 42 -43.522 -22.581 21.234 1.00 0.00 O ATOM 289 CB LYS 42 -42.434 -24.154 18.755 1.00 0.00 C ATOM 290 CEN LYS 42 -41.029 -24.990 17.412 1.00 0.00 C ATOM 291 H LYS 42 -44.799 -22.655 18.825 1.00 0.00 H ATOM 292 N PRO 43 -43.221 -24.697 21.939 1.00 0.00 N ATOM 293 CA PRO 43 -42.987 -24.319 23.328 1.00 0.00 C ATOM 294 C PRO 43 -41.714 -23.495 23.468 1.00 0.00 C ATOM 295 O PRO 43 -40.663 -23.864 22.943 1.00 0.00 O ATOM 296 CB PRO 43 -42.891 -25.662 24.073 1.00 0.00 C ATOM 297 CEN PRO 43 -43.100 -26.361 22.443 1.00 0.00 C ATOM 298 N VAL 44 -41.814 -22.376 24.178 1.00 0.00 N ATOM 299 CA VAL 44 -40.652 -21.544 24.464 1.00 0.00 C ATOM 300 C VAL 44 -39.941 -22.005 25.729 1.00 0.00 C ATOM 301 O VAL 44 -38.737 -21.801 25.886 1.00 0.00 O ATOM 302 CB VAL 44 -41.043 -20.061 24.616 1.00 0.00 C ATOM 303 CEN VAL 44 -41.000 -19.443 24.316 1.00 0.00 C ATOM 304 H VAL 44 -42.718 -22.096 24.529 1.00 0.00 H ATOM 305 N MET 45 -40.694 -22.626 26.631 1.00 0.00 N ATOM 306 CA MET 45 -40.123 -23.178 27.855 1.00 0.00 C ATOM 307 C MET 45 -40.738 -24.532 28.186 1.00 0.00 C ATOM 308 O MET 45 -41.929 -24.754 27.967 1.00 0.00 O ATOM 309 CB MET 45 -40.327 -22.207 29.016 1.00 0.00 C ATOM 310 CEN MET 45 -39.469 -21.109 30.081 1.00 0.00 C ATOM 311 H MET 45 -41.685 -22.718 26.465 1.00 0.00 H ATOM 312 N PRO 46 -39.918 -25.433 28.716 1.00 0.00 N ATOM 313 CA PRO 46 -40.399 -26.735 29.166 1.00 0.00 C ATOM 314 C PRO 46 -41.358 -26.590 30.341 1.00 0.00 C ATOM 315 O PRO 46 -41.234 -25.667 31.146 1.00 0.00 O ATOM 316 CB PRO 46 -39.119 -27.494 29.553 1.00 0.00 C ATOM 317 CEN PRO 46 -38.308 -25.965 29.119 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 173 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 47.66 82.4 68 100.0 68 ARMSMC SECONDARY STRUCTURE . . 31.61 91.2 34 100.0 34 ARMSMC SURFACE . . . . . . . . 42.25 83.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 67.42 75.0 12 100.0 12 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 29 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 21 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.96 (Number of atoms: 35) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.96 35 100.0 35 CRMSCA CRN = ALL/NP . . . . . 0.1989 CRMSCA SECONDARY STRUCTURE . . 4.56 17 100.0 17 CRMSCA SURFACE . . . . . . . . 7.28 29 100.0 29 CRMSCA BURIED . . . . . . . . 5.13 6 100.0 6 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.95 173 100.0 173 CRMSMC SECONDARY STRUCTURE . . 4.69 85 100.0 85 CRMSMC SURFACE . . . . . . . . 7.27 143 100.0 143 CRMSMC BURIED . . . . . . . . 5.17 30 100.0 30 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.08 33 21.2 156 CRMSSC RELIABLE SIDE CHAINS . 7.08 33 24.3 136 CRMSSC SECONDARY STRUCTURE . . 4.83 17 20.2 84 CRMSSC SURFACE . . . . . . . . 7.43 27 21.3 127 CRMSSC BURIED . . . . . . . . 5.23 6 20.7 29 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.95 173 58.4 296 CRMSALL SECONDARY STRUCTURE . . 4.69 85 55.9 152 CRMSALL SURFACE . . . . . . . . 7.27 143 58.8 243 CRMSALL BURIED . . . . . . . . 5.17 30 56.6 53 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.961 1.000 0.500 35 100.0 35 ERRCA SECONDARY STRUCTURE . . 4.294 1.000 0.500 17 100.0 17 ERRCA SURFACE . . . . . . . . 6.184 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 4.880 1.000 0.500 6 100.0 6 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.971 1.000 0.500 173 100.0 173 ERRMC SECONDARY STRUCTURE . . 4.399 1.000 0.500 85 100.0 85 ERRMC SURFACE . . . . . . . . 6.201 1.000 0.500 143 100.0 143 ERRMC BURIED . . . . . . . . 4.875 1.000 0.500 30 100.0 30 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.074 1.000 0.500 33 21.2 156 ERRSC RELIABLE SIDE CHAINS . 6.074 1.000 0.500 33 24.3 136 ERRSC SECONDARY STRUCTURE . . 4.564 1.000 0.500 17 20.2 84 ERRSC SURFACE . . . . . . . . 6.314 1.000 0.500 27 21.3 127 ERRSC BURIED . . . . . . . . 4.992 1.000 0.500 6 20.7 29 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.971 1.000 0.500 173 58.4 296 ERRALL SECONDARY STRUCTURE . . 4.399 1.000 0.500 85 55.9 152 ERRALL SURFACE . . . . . . . . 6.201 1.000 0.500 143 58.8 243 ERRALL BURIED . . . . . . . . 4.875 1.000 0.500 30 56.6 53 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 5 17 32 35 35 DISTCA CA (P) 0.00 2.86 14.29 48.57 91.43 35 DISTCA CA (RMS) 0.00 1.37 2.41 3.65 5.45 DISTCA ALL (N) 0 6 24 82 156 173 296 DISTALL ALL (P) 0.00 2.03 8.11 27.70 52.70 296 DISTALL ALL (RMS) 0.00 1.75 2.48 3.55 5.37 DISTALL END of the results output